Structure

Physi-Chem Properties

Molecular Weight:  1988.92
Volume:  1871.165
LogP:  1.528
LogD:  0.958
LogS:  -2.305
# Rotatable Bonds:  31
TPSA:  715.26
# H-Bond Aceptor:  46
# H-Bond Donor:  25
# Rings:  14
# Heavy Atoms:  46

MedChem Properties

QED Drug-Likeness Score:  0.019
Synthetic Accessibility Score:  8.526
Fsp3:  0.913
Lipinski Rule-of-5:  Rejected
Pfizer Rule:  Accepted
GSK Rule:  Rejected
BMS Rule:  1
Golden Triangle Rule:  Rejected
Chelating Alert:  0
PAINS Alert:  0

ADMET Properties (ADMETlab2.0)

ADMET: Absorption

Caco-2 Permeability:  -6.547
MDCK Permeability:  0.004617250058799982
Pgp-inhibitor:  0.007
Pgp-substrate:  1.0
Human Intestinal Absorption (HIA):  1.0
20% Bioavailability (F20%):  0.0
30% Bioavailability (F30%):  1.0

ADMET: Distribution

Blood-Brain-Barrier Penetration (BBB):  0.322
Plasma Protein Binding (PPB):  45.88908386230469%
Volume Distribution (VD):  -0.879
Pgp-substrate:  18.97307777404785%

ADMET: Metabolism

CYP1A2-inhibitor:  0.0
CYP1A2-substrate:  0.034
CYP2C19-inhibitor:  0.0
CYP2C19-substrate:  0.047
CYP2C9-inhibitor:  0.0
CYP2C9-substrate:  0.0
CYP2D6-inhibitor:  0.0
CYP2D6-substrate:  0.009
CYP3A4-inhibitor:  0.042
CYP3A4-substrate:  0.0

ADMET: Excretion

Clearance (CL):  -2.38
Half-life (T1/2):  0.841

ADMET: Toxicity

hERG Blockers:  0.21
Human Hepatotoxicity (H-HT):  0.061
Drug-inuced Liver Injury (DILI):  0.011
AMES Toxicity:  0.022
Rat Oral Acute Toxicity:  0.016
Maximum Recommended Daily Dose:  0.0
Skin Sensitization:  0.021
Carcinogencity:  0.008
Eye Corrosion:  0.003
Eye Irritation:  0.003
Respiratory Toxicity:  0.017

Download Data

Data Type Select
General Info & Identifiers & Properties  
Structure MOL file  
Source Organisms  
Biological Activities  
Similar NPs/Drugs  

  Natural Product: NPC220838

Natural Product ID:  NPC220838
Common Name*:   Prosapogenin 12
IUPAC Name:   [(2S,3R,4S,5S,6R)-3-[(2S,3R,4S,5S,6S)-5-[(2S,3R,4R,5S)-3,4-dihydroxy-5-(hydroxymethyl)oxolan-2-yl]oxy-3-hydroxy-6-methyl-4-[(2S,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxyoxan-2-yl]oxy-4,5-dihydroxy-6-(hydroxymethyl)oxan-2-yl] (3S,4aR,6aR,6aS,6bR,8aR,10S,12aR,14bS)-10-[(2R,3R,4S,5S,6R)-6-[[(2R,3R,4S,5R,6R)-4,5-dihydroxy-6-methyl-3-[(2S,3R,4S,5R)-3,4,5-trihydroxyoxan-2-yl]oxyoxan-2-yl]oxymethyl]-4,5-dihydroxy-3-[(3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxyoxan-2-yl]oxy-3-[(2E,6S)-2,6-dimethyl-6-[(2S,3R,4S,5S,6R)-3,4,5-trihydroxy-6-methyloxan-2-yl]oxyocta-2,7-dienoyl]oxy-2,2,6a,6b,9,9,12a-heptamethyl-1,3,4,5,6,6a,7,8,8a,10,11,12,13,14b-tetradecahydropicene-4a-carboxylate
Synonyms:   prosapogenin 12
Standard InCHIKey:  ICCPDEZOBBDJJC-MEVDHXLSSA-N
Standard InCHI:  InChI=1S/C92H148O46/c1-14-88(10,138-81-68(116)58(106)50(98)35(3)122-81)21-15-16-34(2)75(118)130-49-27-92(85(119)137-84-74(62(110)55(103)43(30-95)128-84)136-80-69(117)71(133-78-66(114)59(107)53(101)41(28-93)125-78)70(37(5)124-80)132-77-65(113)56(104)44(31-96)127-77)25-24-90(12)38(39(92)26-86(49,6)7)17-18-47-89(11)22-20-48(87(8,9)46(89)19-23-91(47,90)13)131-83-73(135-79-67(115)60(108)54(102)42(29-94)126-79)63(111)57(105)45(129-83)33-121-82-72(61(109)51(99)36(4)123-82)134-76-64(112)52(100)40(97)32-120-76/h14,16-17,35-37,39-74,76-84,93-117H,1,15,18-33H2,2-13H3/b34-16+/t35-,36-,37+,39+,40-,41-,42-,43-,44+,45-,46+,47-,48+,49+,50-,51+,52+,53-,54-,55-,56+,57-,58+,59+,60+,61+,62+,63+,64-,65-,66-,67-,68-,69-,70+,71+,72-,73-,74-,76+,77+,78+,79?,80+,81+,82-,83+,84+,88-,89+,90-,91-,92-/m1/s1
SMILES:  OC[C@H]1O[C@@H](OC(=O)[C@]23CC[C@@]4(C(=CC[C@H]5[C@@]4(C)CC[C@@H]4[C@]5(C)CC[C@@H](C4(C)C)O[C@@H]4O[C@H](CO[C@@H]5O[C@H](C)[C@@H]([C@@H]([C@H]5O[C@@H]5OC[C@H]([C@@H]([C@H]5O)O)O)O)O)[C@H]([C@@H]([C@H]4OC4O[C@H](CO)[C@H]([C@@H]([C@H]4O)O)O)O)O)[C@@H]3CC([C@H](C2)OC(=O)/C(=C/CC[C@](O[C@@H]2O[C@H](C)[C@H]([C@@H]([C@H]2O)O)O)(C=C)C)/C)(C)C)C)[C@@H]([C@H]([C@@H]1O)O)O[C@@H]1O[C@@H](C)[C@@H]([C@H]([C@H]1O)O[C@@H]1O[C@H](CO)[C@H]([C@@H]([C@H]1O)O)O)O[C@@H]1O[C@H]([C@@H]([C@H]1O)O)CO
Synthetic Gene Cluster:   n.a.
ChEMBL Identifier:   CHEMBL505884
PubChem CID:   44566625
Chemical Classification**:  
  • CHEMONTID:0000000 [Organic compounds]
    • [CHEMONTID:0000012] Lipids and lipid-like molecules
      • [CHEMONTID:0000259] Prenol lipids
        • [CHEMONTID:0002049] Terpene glycosides
          • [CHEMONTID:0001580] Triterpene glycosides
            • [CHEMONTID:0002358] Triterpene saponins

*Note: the InCHIKey will be temporarily assigned as the "Common Name" if no IUPAC name or alternative short name is available.
**Note: the Chemical Classification was calculated by NPClassifier Version 1.5. Reference: PMID:34662515.

  Species Source

Organism ID Organism Name Taxonomy Level Family SuperKingdom Isolation Part Collection Location Collection Time Reference
NPO12181 Albizia julibrissin Species Fabaceae Eukaryota n.a. bark n.a. PMID[15283458]
NPO12181 Albizia julibrissin Species Fabaceae Eukaryota n.a. stem n.a. PMID[15577257]
NPO12181 Albizia julibrissin Species Fabaceae Eukaryota n.a. n.a. n.a. PMID[9051910]
NPO12181 Albizia julibrissin Species Fabaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO12181 Albizia julibrissin Species Fabaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO12181 Albizia julibrissin Species Fabaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO12181 Albizia julibrissin Species Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]

☑ Note for Reference:
In addition to directly collecting NP source organism data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated them from below databases:
UNPD: Universal Natural Products Database [PMID: 23638153].
StreptomeDB: a database of streptomycetes natural products [PMID: 33051671].
TM-MC: a database of medicinal materials and chemical compounds in Northeast Asian traditional medicine [PMID: 26156871].
TCM@Taiwan: a Traditional Chinese Medicine database [PMID: 21253603].
TCMID: a Traditional Chinese Medicine database [PMID: 29106634].
TCMSP: The traditional Chinese medicine systems pharmacology database and analysis platform [PMID: 24735618].
HerDing: a herb recommendation system to treat diseases using genes and chemicals [PMID: 26980517].
MetaboLights: a metabolomics database [PMID: 27010336].
FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].

  NP Quantity Composition/Concentration

Organism ID NP ID Organism Material Preparation Organism Part NP Quantity (Standard) NP Quantity (Minimum) NP Quantity (Maximum) Quantity Unit Reference

☑ Note for Reference:
In addition to directly collecting NP quantitative data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated NP quantitative records for specific NP domains (e.g., NPS from foods or herbs) from domain-specific databases. These databases include:
DUKE: Dr. Duke's Phytochemical and Ethnobotanical Databases.
PHENOL EXPLORER: is the first comprehensive database on polyphenol content in foods [PMID: 24103452], its homepage can be accessed at here.
FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].

  Biological Activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference
NPT91 Cell Line KB Homo sapiens IC50 > 10.0 ug.mL-1 PMID[575345]

☑ Note for Activity Records:
☉ The quantitative biological activities were primarily integrated from ChEMBL (Version-30) database and were also directly collected from PubMed literature. PubMed PMID was provided as the reference link for each activity record.

  Chemically structural similarity: I. Similar Active Natural Products in NPASS

Top-200 similar NPs were calculated against the active-NP-set (includes 4,3285 NPs with experimentally-derived bioactivity available in NPASS)

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules. Tc lies between [0, 1] where '1' indicates the highest similarity. What is Tanimoto coefficient

●  The left chart: Distribution of similarity level between NPC220838 and all remaining natural products in the NPASS database.
●  The right table: Most similar natural products (Tc>=0.56 or Top200).

Similarity Score Similarity Level Natural Product ID
1.0 High Similarity NPC45606
0.9832 High Similarity NPC222951
0.9832 High Similarity NPC311178
0.9832 High Similarity NPC43589
0.9832 High Similarity NPC300655
0.975 High Similarity NPC475177
0.975 High Similarity NPC324933
0.975 High Similarity NPC233223
0.975 High Similarity NPC183816
0.975 High Similarity NPC319719
0.975 High Similarity NPC475444
0.975 High Similarity NPC473679
0.975 High Similarity NPC322904
0.975 High Similarity NPC196874
0.9661 High Similarity NPC297950
0.95 High Similarity NPC472268
0.95 High Similarity NPC112492
0.95 High Similarity NPC472269
0.95 High Similarity NPC472270
0.95 High Similarity NPC23020
0.9256 High Similarity NPC470516
0.9153 High Similarity NPC477464
0.9153 High Similarity NPC470915
0.9153 High Similarity NPC470911
0.9153 High Similarity NPC470517
0.9076 High Similarity NPC268184
0.9068 High Similarity NPC36831
0.9068 High Similarity NPC470515
0.9068 High Similarity NPC475899
0.9068 High Similarity NPC471548
0.9 High Similarity NPC275225
0.9 High Similarity NPC51099
0.9 High Similarity NPC293031
0.9 High Similarity NPC68767
0.9 High Similarity NPC477463
0.8992 High Similarity NPC207738
0.8992 High Similarity NPC470914
0.8983 High Similarity NPC148417
0.8983 High Similarity NPC136768
0.8983 High Similarity NPC473405
0.8983 High Similarity NPC68175
0.8983 High Similarity NPC110633
0.8974 High Similarity NPC298034
0.8974 High Similarity NPC43550
0.8974 High Similarity NPC476068
0.8974 High Similarity NPC236638
0.8974 High Similarity NPC309907
0.8974 High Similarity NPC294453
0.8974 High Similarity NPC161717
0.8974 High Similarity NPC204414
0.8974 High Similarity NPC473714
0.8974 High Similarity NPC60557
0.8974 High Similarity NPC65105
0.8974 High Similarity NPC224381
0.8974 High Similarity NPC67857
0.8974 High Similarity NPC4328
0.8974 High Similarity NPC79643
0.8974 High Similarity NPC227551
0.8974 High Similarity NPC471550
0.8974 High Similarity NPC76972
0.8974 High Similarity NPC123199
0.8974 High Similarity NPC475140
0.8974 High Similarity NPC71065
0.8974 High Similarity NPC293330
0.8974 High Similarity NPC54636
0.8974 High Similarity NPC471385
0.8974 High Similarity NPC119592
0.8974 High Similarity NPC250247
0.8974 High Similarity NPC57484
0.8974 High Similarity NPC475160
0.8974 High Similarity NPC202828
0.8974 High Similarity NPC70809
0.8974 High Similarity NPC41061
0.8974 High Similarity NPC305981
0.8974 High Similarity NPC469782
0.8974 High Similarity NPC261506
0.8974 High Similarity NPC100639
0.896 High Similarity NPC476776
0.896 High Similarity NPC478154
0.896 High Similarity NPC312650
0.8952 High Similarity NPC47995
0.8952 High Similarity NPC265841
0.8917 High Similarity NPC135369
0.8917 High Similarity NPC142151
0.8917 High Similarity NPC110385
0.8917 High Similarity NPC144644
0.8917 High Similarity NPC37860
0.8917 High Similarity NPC473130
0.8917 High Similarity NPC476150
0.8917 High Similarity NPC473645
0.8917 High Similarity NPC476127
0.8917 High Similarity NPC153673
0.8917 High Similarity NPC267694
0.8908 High Similarity NPC232237
0.8908 High Similarity NPC105800
0.8898 High Similarity NPC160415
0.8898 High Similarity NPC279915
0.8898 High Similarity NPC58448
0.8898 High Similarity NPC110700
0.8898 High Similarity NPC161674
0.8898 High Similarity NPC471384
0.8889 High Similarity NPC174720
0.8889 High Similarity NPC155410
0.8889 High Similarity NPC192600
0.8889 High Similarity NPC295823
0.8889 High Similarity NPC114304
0.8889 High Similarity NPC323341
0.8889 High Similarity NPC251263
0.8889 High Similarity NPC476779
0.8889 High Similarity NPC241909
0.8889 High Similarity NPC166422
0.8889 High Similarity NPC478151
0.8889 High Similarity NPC114287
0.8889 High Similarity NPC46665
0.8889 High Similarity NPC475287
0.8889 High Similarity NPC475467
0.8889 High Similarity NPC219180
0.8889 High Similarity NPC151543
0.8889 High Similarity NPC225791
0.8889 High Similarity NPC309714
0.8889 High Similarity NPC133818
0.8889 High Similarity NPC473826
0.888 High Similarity NPC476780
0.888 High Similarity NPC478155
0.888 High Similarity NPC271610
0.888 High Similarity NPC476774
0.888 High Similarity NPC476775
0.888 High Similarity NPC25998
0.8871 High Similarity NPC470476
0.8871 High Similarity NPC470475
0.8833 High Similarity NPC471577
0.8824 High Similarity NPC220160
0.8824 High Similarity NPC309223
0.8824 High Similarity NPC473452
0.8824 High Similarity NPC8524
0.8824 High Similarity NPC85154
0.8824 High Similarity NPC33012
0.8824 High Similarity NPC69811
0.8824 High Similarity NPC185466
0.8824 High Similarity NPC104137
0.8824 High Similarity NPC475514
0.8824 High Similarity NPC191827
0.8824 High Similarity NPC286457
0.8824 High Similarity NPC475209
0.8824 High Similarity NPC470876
0.8824 High Similarity NPC102505
0.8824 High Similarity NPC473824
0.8824 High Similarity NPC123522
0.8824 High Similarity NPC475119
0.8824 High Similarity NPC471547
0.8819 High Similarity NPC476778
0.8819 High Similarity NPC476777
0.881 High Similarity NPC178264
0.881 High Similarity NPC30279
0.881 High Similarity NPC478150
0.881 High Similarity NPC192765
0.881 High Similarity NPC473918
0.881 High Similarity NPC478153
0.881 High Similarity NPC46823
0.881 High Similarity NPC277212
0.881 High Similarity NPC71391
0.881 High Similarity NPC478152
0.8803 High Similarity NPC109079
0.8803 High Similarity NPC10320
0.8803 High Similarity NPC324875
0.8803 High Similarity NPC276093
0.8803 High Similarity NPC102439
0.8803 High Similarity NPC475516
0.8803 High Similarity NPC101744
0.8803 High Similarity NPC139044
0.8803 High Similarity NPC104400
0.8803 High Similarity NPC292677
0.8803 High Similarity NPC471383
0.8803 High Similarity NPC475504
0.8803 High Similarity NPC257468
0.8803 High Similarity NPC79718
0.8803 High Similarity NPC104071
0.8803 High Similarity NPC469946
0.8803 High Similarity NPC473373
0.88 High Similarity NPC9470
0.88 High Similarity NPC88311
0.88 High Similarity NPC97918
0.88 High Similarity NPC470518
0.88 High Similarity NPC115656
0.88 High Similarity NPC269484
0.88 High Similarity NPC477196
0.88 High Similarity NPC280029
0.88 High Similarity NPC82380
0.88 High Similarity NPC244296
0.88 High Similarity NPC252289
0.88 High Similarity NPC141600
0.88 High Similarity NPC11577
0.88 High Similarity NPC252657
0.88 High Similarity NPC1314
0.88 High Similarity NPC305793
0.88 High Similarity NPC107536
0.88 High Similarity NPC273878
0.88 High Similarity NPC472267
0.876 High Similarity NPC476991
0.875 High Similarity NPC237191

  Chemically structural similarity: II. Similar Clinical/Approved Drugs

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules.

●  The left chart: Distribution of similarity level between NPC220838 and all drugs/candidates.
●  The right table: Most similar clinical/approved drugs (Tc>=0.56 or Top200).

Similarity Score Similarity Level Drug ID Developmental Stage
0.8417 Intermediate Similarity NPD8133 Approved
0.84 Intermediate Similarity NPD8328 Phase 3
0.8306 Intermediate Similarity NPD8377 Approved
0.8306 Intermediate Similarity NPD8294 Approved
0.8305 Intermediate Similarity NPD6686 Approved
0.824 Intermediate Similarity NPD8516 Approved
0.824 Intermediate Similarity NPD8378 Approved
0.824 Intermediate Similarity NPD8515 Approved
0.824 Intermediate Similarity NPD8380 Approved
0.824 Intermediate Similarity NPD8296 Approved
0.824 Intermediate Similarity NPD8517 Approved
0.824 Intermediate Similarity NPD8379 Approved
0.824 Intermediate Similarity NPD8335 Approved
0.8125 Intermediate Similarity NPD7507 Approved
0.8095 Intermediate Similarity NPD8513 Phase 3
0.8095 Intermediate Similarity NPD8033 Approved
0.7953 Intermediate Similarity NPD7503 Approved
0.7951 Intermediate Similarity NPD8413 Clinical (unspecified phase)
0.7939 Intermediate Similarity NPD7319 Approved
0.7934 Intermediate Similarity NPD8132 Clinical (unspecified phase)
0.792 Intermediate Similarity NPD8295 Clinical (unspecified phase)
0.7857 Intermediate Similarity NPD7328 Approved
0.7857 Intermediate Similarity NPD7327 Approved
0.7795 Intermediate Similarity NPD7516 Approved
0.7727 Intermediate Similarity NPD7736 Approved
0.7623 Intermediate Similarity NPD6412 Phase 2
0.75 Intermediate Similarity NPD7115 Discovery
0.7395 Intermediate Similarity NPD7902 Approved
0.736 Intermediate Similarity NPD4061 Clinical (unspecified phase)
0.7348 Intermediate Similarity NPD6370 Approved
0.7333 Intermediate Similarity NPD7638 Approved
0.7302 Intermediate Similarity NPD5955 Clinical (unspecified phase)
0.7288 Intermediate Similarity NPD7748 Approved
0.7273 Intermediate Similarity NPD7639 Approved
0.7273 Intermediate Similarity NPD7640 Approved
0.7259 Intermediate Similarity NPD8293 Discontinued
0.7239 Intermediate Similarity NPD7492 Approved
0.7197 Intermediate Similarity NPD6054 Approved
0.719 Intermediate Similarity NPD4225 Approved
0.7188 Intermediate Similarity NPD6882 Approved
0.7188 Intermediate Similarity NPD8297 Approved
0.7185 Intermediate Similarity NPD6616 Approved
0.7143 Intermediate Similarity NPD7901 Clinical (unspecified phase)
0.7143 Intermediate Similarity NPD7900 Approved
0.7132 Intermediate Similarity NPD8074 Phase 3
0.7132 Intermediate Similarity NPD7078 Approved
0.7119 Intermediate Similarity NPD7515 Phase 2
0.7099 Intermediate Similarity NPD6009 Approved
0.7068 Intermediate Similarity NPD6319 Approved
0.7063 Intermediate Similarity NPD5954 Clinical (unspecified phase)
0.7049 Intermediate Similarity NPD8029 Clinical (unspecified phase)
0.7015 Intermediate Similarity NPD6016 Approved
0.7015 Intermediate Similarity NPD6015 Approved
0.7008 Intermediate Similarity NPD5345 Clinical (unspecified phase)
0.7 Intermediate Similarity NPD4632 Approved
0.6977 Remote Similarity NPD6649 Approved
0.6977 Remote Similarity NPD6650 Approved
0.6963 Remote Similarity NPD5988 Approved
0.694 Remote Similarity NPD6059 Approved
0.6905 Remote Similarity NPD8170 Clinical (unspecified phase)
0.6875 Remote Similarity NPD6881 Approved
0.6875 Remote Similarity NPD6899 Approved
0.6846 Remote Similarity NPD8130 Phase 1
0.6822 Remote Similarity NPD6373 Approved
0.6822 Remote Similarity NPD6372 Approved
0.6797 Remote Similarity NPD5697 Approved
0.6788 Remote Similarity NPD6067 Discontinued
0.6769 Remote Similarity NPD7290 Approved
0.6769 Remote Similarity NPD7102 Approved
0.6769 Remote Similarity NPD6883 Approved
0.675 Remote Similarity NPD46 Approved
0.675 Remote Similarity NPD6698 Approved
0.6746 Remote Similarity NPD7632 Discontinued
0.6719 Remote Similarity NPD5739 Approved
0.6719 Remote Similarity NPD6675 Approved
0.6719 Remote Similarity NPD7128 Approved
0.6719 Remote Similarity NPD6402 Approved
0.6718 Remote Similarity NPD6869 Approved
0.6718 Remote Similarity NPD6617 Approved
0.6718 Remote Similarity NPD6847 Approved
0.6694 Remote Similarity NPD8035 Phase 2
0.6694 Remote Similarity NPD8034 Phase 2
0.6692 Remote Similarity NPD6013 Approved
0.6692 Remote Similarity NPD6014 Approved
0.6692 Remote Similarity NPD6012 Approved
0.6667 Remote Similarity NPD7899 Clinical (unspecified phase)
0.6667 Remote Similarity NPD7604 Phase 2
0.6667 Remote Similarity NPD5344 Discontinued
0.6642 Remote Similarity NPD5983 Phase 2
0.6623 Remote Similarity NPD7625 Phase 1
0.6615 Remote Similarity NPD7320 Approved
0.6615 Remote Similarity NPD6011 Approved
0.661 Remote Similarity NPD1694 Approved
0.6589 Remote Similarity NPD6008 Approved
0.6571 Remote Similarity NPD6336 Discontinued
0.6538 Remote Similarity NPD5701 Approved
0.6522 Remote Similarity NPD6921 Approved
0.6515 Remote Similarity NPD6371 Approved
0.6515 Remote Similarity NPD4634 Approved
0.6504 Remote Similarity NPD8171 Discontinued
0.6504 Remote Similarity NPD6399 Phase 3
0.65 Remote Similarity NPD3573 Approved
0.6484 Remote Similarity NPD5211 Phase 2
0.6479 Remote Similarity NPD6033 Approved
0.6475 Remote Similarity NPD7838 Discovery
0.6463 Remote Similarity NPD7966 Clinical (unspecified phase)
0.6458 Remote Similarity NPD7260 Phase 2
0.6457 Remote Similarity NPD5285 Approved
0.6457 Remote Similarity NPD5286 Approved
0.6457 Remote Similarity NPD4696 Approved
0.6429 Remote Similarity NPD7829 Approved
0.6429 Remote Similarity NPD6083 Phase 2
0.6429 Remote Similarity NPD7830 Approved
0.6429 Remote Similarity NPD6084 Phase 2
0.6423 Remote Similarity NPD6079 Approved
0.6418 Remote Similarity NPD6053 Discontinued
0.6417 Remote Similarity NPD3618 Phase 1
0.6408 Remote Similarity NPD8448 Approved
0.6407 Remote Similarity NPD7799 Discontinued
0.6389 Remote Similarity NPD8392 Approved
0.6389 Remote Similarity NPD8390 Approved
0.6389 Remote Similarity NPD8391 Approved
0.6385 Remote Similarity NPD5141 Approved
0.6377 Remote Similarity NPD7100 Approved
0.6377 Remote Similarity NPD7101 Approved
0.637 Remote Similarity NPD8450 Suspended
0.6357 Remote Similarity NPD5224 Approved
0.6357 Remote Similarity NPD4633 Approved
0.6357 Remote Similarity NPD5226 Approved
0.6357 Remote Similarity NPD5225 Approved
0.6356 Remote Similarity NPD4752 Clinical (unspecified phase)
0.6343 Remote Similarity NPD6401 Clinical (unspecified phase)
0.6338 Remote Similarity NPD8451 Approved
0.6333 Remote Similarity NPD7520 Clinical (unspecified phase)
0.6328 Remote Similarity NPD6648 Approved
0.6311 Remote Similarity NPD7513 Clinical (unspecified phase)
0.6308 Remote Similarity NPD5175 Approved
0.6308 Remote Similarity NPD5174 Approved
0.6304 Remote Similarity NPD6335 Approved
0.6301 Remote Similarity NPD8449 Approved
0.6299 Remote Similarity NPD4755 Approved
0.6286 Remote Similarity NPD6291 Clinical (unspecified phase)
0.6279 Remote Similarity NPD5223 Approved
0.6277 Remote Similarity NPD6274 Approved
0.6276 Remote Similarity NPD5956 Approved
0.6272 Remote Similarity NPD8470 Clinical (unspecified phase)
0.627 Remote Similarity NPD6356 Clinical (unspecified phase)
0.626 Remote Similarity NPD5328 Approved
0.625 Remote Similarity NPD5696 Approved
0.6241 Remote Similarity NPD4729 Approved
0.6241 Remote Similarity NPD4730 Approved
0.624 Remote Similarity NPD4202 Approved
0.6239 Remote Similarity NPD7645 Phase 2
0.6232 Remote Similarity NPD6317 Approved
0.622 Remote Similarity NPD5222 Approved
0.622 Remote Similarity NPD5221 Approved
0.622 Remote Similarity NPD5220 Clinical (unspecified phase)
0.6202 Remote Similarity NPD4700 Approved
0.6197 Remote Similarity NPD7642 Approved
0.619 Remote Similarity NPD6845 Suspended
0.6187 Remote Similarity NPD6314 Approved
0.6187 Remote Similarity NPD6313 Approved
0.6172 Remote Similarity NPD5173 Approved
0.616 Remote Similarity NPD6411 Approved
0.616 Remote Similarity NPD7983 Approved
0.6159 Remote Similarity NPD6868 Approved
0.6154 Remote Similarity NPD8342 Approved
0.6154 Remote Similarity NPD8340 Approved
0.6154 Remote Similarity NPD8341 Approved
0.6154 Remote Similarity NPD8299 Approved
0.6148 Remote Similarity NPD5251 Approved
0.6148 Remote Similarity NPD7146 Approved
0.6148 Remote Similarity NPD5330 Approved
0.6148 Remote Similarity NPD5247 Approved
0.6148 Remote Similarity NPD5249 Phase 3
0.6148 Remote Similarity NPD7521 Approved
0.6148 Remote Similarity NPD7334 Approved
0.6148 Remote Similarity NPD5248 Approved
0.6148 Remote Similarity NPD6684 Approved
0.6148 Remote Similarity NPD6409 Approved
0.6148 Remote Similarity NPD5250 Approved
0.6142 Remote Similarity NPD5695 Phase 3
0.6142 Remote Similarity NPD4629 Approved
0.6142 Remote Similarity NPD5210 Approved
0.6142 Remote Similarity NPD1698 Clinical (unspecified phase)
0.6138 Remote Similarity NPD8337 Approved
0.6138 Remote Similarity NPD8336 Approved
0.6116 Remote Similarity NPD6400 Clinical (unspecified phase)
0.6111 Remote Similarity NPD5779 Approved
0.6111 Remote Similarity NPD5778 Approved
0.6094 Remote Similarity NPD4697 Phase 3
0.6092 Remote Similarity NPD8312 Approved
0.6092 Remote Similarity NPD8313 Approved
0.609 Remote Similarity NPD4768 Approved
0.609 Remote Similarity NPD4767 Approved
0.6081 Remote Similarity NPD8338 Approved
0.6071 Remote Similarity NPD7641 Discontinued
0.6063 Remote Similarity NPD5282 Discontinued
0.6057 Remote Similarity NPD8407 Phase 2
0.6056 Remote Similarity NPD8444 Approved

  Bioactivity similarity: Similar Natural Products in NPASS

Bioactivity similarity was calculated based on bioactivity descriptors of compounds. The bioactivity descriptors were calculated by a recently developed AI algorithm Chemical Checker (CC) [Nature Biotechnology, 38:1087–1096, 2020; Nature Communications, 12:3932, 2021], which evaluated bioactivity similarities at five levels:
A: chemistry similarity;
B: biological targets similarity;
C: networks similarity;
D: cell-based bioactivity similarity;
E: similarity based on clinical data.

Those 5 categories of CC bioactivity descriptors were calculated and then subjected to manifold projection using UMAP algorithm, to project all NPs on a 2-Dimensional space. The current NP was highlighted with a small circle in the 2-D map. Below figures: left-to-right, A-to-E.

A: chemistry similarity
B: biological targets similarity
C: networks similarity
D: cell-based bioactivity similarity
E: similarity based on clinical data