Natural Product: NPC119592

Natural Product IDNPC119592
Common Name
?
The InCHIKey will be temporarily assigned as the "Common Name" if no IUPAC name or alternative short name is available.
Huzhangoside D
IUPAC Name [(2S,3R,4S,5S,6R)-6-[[(2R,3R,4R,5S,6R)-3,4-dihydroxy-6-(hydroxymethyl)-5-[(2S,3R,4R,5R,6S)-3,4,5-trihydroxy-6-methyloxan-2-yl]oxyoxan-2-yl]oxymethyl]-3,4,5-trihydroxyoxan-2-yl] (4aS,6aR,6aS,6bR,8aR,9R,10S,12aR,14bS)-10-[(2S,3R,4S,5S)-3-[(2S,3R,4R,5S,6S)-3,5-dihydroxy-6-methyl-4-[(2S,3R,4R,5R)-3,4,5-trihydroxyoxan-2-yl]oxyoxan-2-yl]oxy-4,5-dihydroxyoxan-2-yl]oxy-9-(hydroxymethyl)-2,2,6a,6b,9,12a-hexamethyl-1,3,4,5,6,6a,7,8,8a,10,11,12,13,14b-tetradecahydropicene-4a-carboxylate
Synonyms Huzhangoside D
Synthetic Gene Cluster n.a.
ChEMBL Identifier CHEMBL1171451
PubChem CID 49799270
Chemical Classification
  • CHEMONTID:0000000 [Organic compounds]
    • [CHEMONTID:0000012] Lipids and lipid-like molecules
      • [CHEMONTID:0000259] Prenol lipids
        • [CHEMONTID:0002049] Terpene glycosides
          • [CHEMONTID:0001580] Triterpene glycosides
            • [CHEMONTID:0002358] Triterpene saponins

The Chemical Classification was calculated by Classyfire, a software for chemical taxonomy calculation. Reference: DOI:10.1186/s13321-016-0174-y.

  Chemical Representations

Standard InCHIKey PLQZZVHULIUSEV-FXDKWXKUSA-N
Standard InCHI InChI=1S/C64H104O30/c1-25-36(69)41(74)45(78)54(86-25)91-49-31(20-65)88-52(47(80)43(49)76)85-23-32-40(73)42(75)46(79)55(89-32)94-58(82)64-17-15-59(3,4)19-28(64)27-9-10-34-60(5)13-12-35(61(6,24-66)33(60)11-14-63(34,8)62(27,7)16-18-64)90-57-51(39(72)30(68)22-84-57)93-56-48(81)50(37(70)26(2)87-56)92-53-44(77)38(71)29(67)21-83-53/h9,25-26,28-57,65-81H,10-24H2,1-8H3/t25-,26-,28-,29+,30-,31+,32+,33+,34+,35-,36-,37-,38+,39-,40+,41+,42-,43+,44+,45+,46+,47+,48+,49+,50+,51+,52+,53-,54-,55-,56-,57-,60-,61-,62+,63+,64-/m0/s1
SMILES C[C@H]1[C@@H]([C@H]([C@H]([C@@H](O1)O[C@@H]1[C@@H](CO)O[C@H]([C@@H]([C@H]1O)O)OC[C@@H]1[C@H]([C@@H]([C@H]([C@@H](O1)OC(=O)[C@@]12CCC(C)(C)C[C@H]2C2=CC[C@@H]3[C@@]4(C)CC[C@@H]([C@@](C)(CO)[C@@H]4CC[C@@]3(C)[C@]2(C)CC1)O[C@H]1[C@@H]([C@H]([C@H](CO1)O)O)O[C@H]1[C@@H]([C@@H]([C@H]([C@H](C)O1)O)O[C@H]1[C@@H]([C@@H]([C@@H](CO1)O)O)O)O)O)O)O)O)O)O

  Calculated Properties

Physi-Chem Properties

Molecular Weight:   1352.66 Volume:   1279.812
?
Van der Waals volume.
Dense:   1.057 LogP:   0.443
?
The logarithm of the n-octanol/water distribution coefficients.
logD7.4:   1.142
?
The logarithm of the n-octanol/water distribution coefficient at pH=7.4.
LogS:   -3.183
?
The logarithm of aqueous solubility value.
Rotatable Bonds:   16.0 Rigid Bonds:   63.0
TPSA:   471.74
?
Topological Polar Surface Area.
H-Bond Acceptor:   30.0
H-Bond Donor:   17.0 Rings:   11.0
Heavy Atoms:   30.0

MedChem Properties

QED Drug-Likeness Score:   0.042 GASA:   1.0
?
GASA represents the probability of being difficult to synthesize, ranging from 0 to 1.
Synthetic Accessibility Score:   7.694 Fsp3:   0.953
MCE-18:   238.0
?
MCE-18 stands for medicinal chemistry evolution.MCE-18≥45 is considered a suitable value.
Lipinski Rule-of-5:   Accepted
Pfizer Rule:   Rejected GSK Rule:   Accepted
Golden Triangle Rule:   Accepted BMS Rule:   1
Chelating Alert:   0 PAINS Alert:   0
Colloidal aggregators:   0.724 Fluc inhibitor:   0.0
?
The fluc inhibitor value is the probability of being fLuc inhibitors, within the range of 0 to 1.
Blue fluorescence:   0.007
?
The blue fluorescence value is the probability of being blue fluorescence, within the range of 0 to 1
Green fluorescence:   0.0
?
The green fluorescence value is the probability of being green fluorescence, within the range of 0 to 1
Reactive compounds:   0.35 Promiscuous compounds:   0.063

ADMET Properties (ADMETlab3.0)

ADMET: Absorption

Caco-2 Permeability:   -7.073 MDCK Permeability:   -4.912
Pgp-inhibitor:   0.0 Pgp-substrate:   0.981
PAMPA:   1.0
?
The experimental data for Peff was logarithmically transformed (logPeff). Molecules with log Peff values below 2.0 were classified as low-permeability (Category 0), while those with log Peff values exceeding 2.5 were classified as high-permeability (Category 1).
Human Intestinal Absorption (HIA):   0.998
20% Bioavailability (F20%):   0.972 30% Bioavailability (F30%):   1.0
50% Bioavailability (F50%):   1.0

ADMET: Distribution

Blood-Brain-Barrier Penetration (BBB):   0.0 MRP1:   0.001
Plasma Protein Binding (PPB):   53.927% Volume Distribution (VD):   -0.243
Fu: 20.317%
?
The fraction unbound in plasms.
OATP1B1 inhibitor:   1.0
OATP1B3 inhibitor:   0.999 BCRP inhibitor:   0.001
BSEP inhibitor:   0.0

ADMET: Metabolism

CYP1A2-inhibitor:   0.0 CYP1A2-substrate:   0.0
CYP2C19-inhibitor:   0.0 CYP2C19-substrate:   0.0
CYP2C9-inhibitor:   0.0 CYP2C9-substrate:   0.0
CYP2D6-inhibitor:   0.0 CYP2D6-substrate:   0.0
CYP3A4-inhibitor:   0.0 CYP3A4-substrate:   0.0
CYP2B6-substrate:   0.0 CYP2C8-inhibitor:   0.513
HLM stability:   0.0
?
Human liver microsomal (HLM) stability. Category 0: stable+ (HLM > 30 min); Category 1: unstable- (HLM ≤ 30 min). The output value is the probability of human liver microsomal instability, where a value closer to 1 indicates a higher likelihood of instability.

ADMET: Excretion

Clearance (CL):  -1.254 Half-life (T1/2):  4.777

ADMET: Toxicity

hERG Blockers:  0.001 hERG Blockers (10um):  0.003
Human Hepatotoxicity (H-HT):  0.522 Drug-induced Liver Injury (DILI):  0.926
AMES Toxicity:  0.956 Rat Oral Acute Toxicity:  0.0
Maximum Recommended Daily Dose:  0.0 Skin Sensitization:  1.0
Carcinogencity:  0.002 Eye Corrosion:  0.0
Eye Irritation:  0.0 Respiratory Toxicity:  0.0
Drug-induced Neurotoxicity:  0.0 Ototoxicity:  1.0
Hematotoxicity:  0.679 Drug-induced Nephrotoxicity:  0.999
Genotoxicity:  0.038 RPMI-8226 Immunitoxicity:  0.515
A549 Cytotoxicity:  0.863 Hek293 Cytotoxicity:  0.203
BCF:   1.311
?
Bioconcentration factors are used for considering secondary poisoning potential and assessing risks to human health via the food chain. The unit is -log10[(mg/L)/(1000*MW)].
IGC50:   3.62
?
48 hour Tetrahymena pyriformis IGC50. The unit of IGC50 is -log10[(mg/L)/(1000*MW)].
LC50DM:   5.269
?
48 hour Daphnia magna LC50. The unit of LC50DM is -log10[(mg/L)/(1000*MW)].
LC50FM:   4.264
?
96 hour fathead minnow LC50. The unit of LC50FM is -log10[(mg/L)/(1000*MW)].

  Species Source

Organism ID Organism Name Taxonomy Level Family SuperKingdom Isolation Part Collection Location Collection Time Reference
NPO6583 Clematis chinensis Species Ranunculaceae Eukaryota roots n.a. n.a. PMID[15387651]
NPO6583 Clematis chinensis Species Ranunculaceae Eukaryota roots and rhizomes Shaoguan, Guangdong Province, China 2007-Dec PMID[20540535]
NPO14101 Artemisia herba-alba Species Asteraceae Eukaryota n.a. n.a. n.a. PMID[33588649]
NPO23649 Protoreaster nodosus Species Oreasteridae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO23939 Onychium siliculosum Species Pteridaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO8552 Clematis tibetana Species Ranunculaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO16842 Gentianodes tianschanica Species Gentianaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO6583 Clematis chinensis Species Ranunculaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO14101 Artemisia herba-alba Species Asteraceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO6583 Clematis chinensis Species Ranunculaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO8552 Clematis tibetana Species Ranunculaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO23939 Onychium siliculosum Species Pteridaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO8552 Clematis tibetana Species Ranunculaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO16842 Gentianodes tianschanica Species Gentianaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO2463 Anemone rivularis Species Ranunculaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO6583 Clematis chinensis Species Ranunculaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO6583 Clematis chinensis Species Ranunculaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO6583 Clematis chinensis Species Ranunculaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO23939 Onychium siliculosum Species Pteridaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO6583 Clematis chinensis Species Ranunculaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO27008 Trixis pallida Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO8552 Clematis tibetana Species Ranunculaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO2463 Anemone rivularis Species Ranunculaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO14101 Artemisia herba-alba Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO23649 Protoreaster nodosus Species Oreasteridae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO16842 Gentianodes tianschanica Species Gentianaceae Eukaryota n.a. n.a. n.a. Database[UNPD]

Note for Reference:
In addition to directly collecting NP source organism data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated them from below databases:
UNPD: Universal Natural Products Database [PMID: 23638153].
StreptomeDB: a database of streptomycetes natural products [PMID: 33051671].
TM-MC: a database of medicinal materials and chemical compounds in Northeast Asian traditional medicine [PMID: 26156871].
TCM@Taiwan: a Traditional Chinese Medicine database [PMID: 21253603].
TCMID: a Traditional Chinese Medicine database [PMID: 29106634].
TCMSP: The traditional Chinese medicine systems pharmacology database and analysis platform [PMID: 24735618].
HerDing: a herb recommendation system to treat diseases using genes and chemicals [PMID: 26980517].
MetaboLights: a metabolomics database [PMID: 27010336].
FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].



  NP Quantity Composition/Concentration

Organism ID Organism Name Organism Material Preparation Organism Part NP Quantity (Standard) NP Quantity (Minimum) NP Quantity (Maximum) Quantity Unit Reference

Note for Reference:
In addition to directly collecting NP quantitative data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated NP quantitative records for specific NP domains (e.g., NPS from foods or herbs) from domain-specific databases. These databases include:
DUKE: Dr. Duke's Phytochemical and Ethnobotanical Databases.
PHENOL EXPLORER: is the first comprehensive database on polyphenol content in foods [PMID: 24103452], its homepage can be accessed at here.
FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].



 Biological Activity

Molecular-level activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference
NPT31 Individual protein Cyclooxygenase-2 Homo sapiens IC50 > 50000.0 nM PMID[20540535]
NPT30 Individual protein Cyclooxygenase-1 Homo sapiens IC50 > 50000.0 nM PMID[20540535]

In vitro activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference

In vivo activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference





 Experimental ADME

Experiment Model Experiment Tissue ADME Type ADME Relation ADME Value ADME Unit Reference





 Experimental Toxicity

Quantitative toxicity

Experiment Model Experiment Organism Toxicity Type Toxicity Relation Toxicity Value Toxicity Unit Reference

Common Abbreviations:
LC: Lethal Concentration; LD: Lethal Dose; LT:Lethal Time; NOAEL: No-observed-adverse-effect Level; BMDL: Benchmark Dose Lower Confidence Limit; BMD: Benchmark Dose; BMC:Benchmark Concentration; LOAEL: Lowest Observed Adverse Effect Level; RfD:Reference Dose; RfC:Reference Concentration; MRL: Minimal Risk Level; MEG: Maximum Exposure Guideline; PAC: Protective Action Criteria

Categorical toxicity labels

Hepatotoxicity Carcinogenicity Mutagenicity Cardiotoxicity Respiratory Toxicity Eye Irritation Endocrine Disruption
Hepatotoxicity Carcinogenicity Mutagenicity Cardiotoxicity Respiratory Toxicity Eye Irritation Endocrine Disruption

Note for Reference:
In addition to directly collecting NP quantitative data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated NP toxicity records from domain-specific databases. These databases include:
ToxValDB: a curated database that compiles quantitative toxicity values for chemicals from diverse public sources to support toxicological research and risk assessment.
TOXRIC: a comprehensive, free-to-access, online database providing toxicological/feature data. The toxicity labels are retrieved from this database. [PMID: 36400569]


  Chemically structural similarity

Similar Active Natural Products in NPASS

Top-200 similar NPs were calculated against the active-NP-set (includes approximately 50,000 NPs with experimentally-derived bioactivity available in NPASS)

Similarity is measured using the Tanimoto coefficient (Tc) , which compares the binary fingerprints of two molecules. Tc is calculated as the intersection divided by the union of '1' bits in the fingerprints, ranging from 0 to 1, with 1 indicating highest similarity.

●  The left chart: Distribution of similarity level between NPC119592 and all remaining natural products in the NPASS database.
●  The right table: Most similar natural products (Tc>=0.5 or Top200).

Similarity Score Similarity Level Natural Product ID
1.0 High Similarity NPC202828
0.9381 High Similarity NPC298034
0.9381 High Similarity NPC71065
0.9292 High Similarity NPC236638
0.9292 High Similarity NPC294453
0.8991 High Similarity NPC76972
0.8991 High Similarity NPC469782
0.8991 High Similarity NPC204414
0.8793 High Similarity NPC305981
0.8718 High Similarity NPC261506
0.8718 High Similarity NPC4328
0.8707 High Similarity NPC65105
0.8621 High Similarity NPC41061
0.8621 High Similarity NPC227551
0.85 High Similarity NPC250247
0.8455 Intermediate Similarity NPC241909
0.8319 Intermediate Similarity NPC60557
0.8319 Intermediate Similarity NPC67857
0.8235 Intermediate Similarity NPC293330
0.8103 Intermediate Similarity NPC135904
0.8103 Intermediate Similarity NPC123199
0.8083 Intermediate Similarity NPC43550
0.8067 Intermediate Similarity NPC110633
0.8051 Intermediate Similarity NPC481080
0.7949 Intermediate Similarity NPC155410
0.7931 Intermediate Similarity NPC79643
0.7815 Intermediate Similarity NPC488560
0.7807 Intermediate Similarity NPC295823
0.7807 Intermediate Similarity NPC174720
0.7807 Intermediate Similarity NPC475467
0.7731 Intermediate Similarity NPC100639
0.7681 Intermediate Similarity NPC469775
0.768 Intermediate Similarity NPC220160
0.7627 Intermediate Similarity NPC192600
0.7586 Intermediate Similarity NPC481078
0.7581 Intermediate Similarity NPC481081
0.7542 Intermediate Similarity NPC475287
0.7518 Intermediate Similarity NPC469774
0.7456 Intermediate Similarity NPC475504
0.744 Intermediate Similarity NPC136768
0.7361 Intermediate Similarity NPC100925
0.7295 Intermediate Similarity NPC475160
0.7295 Intermediate Similarity NPC473714
0.7273 Intermediate Similarity NPC165204
0.726 Intermediate Similarity NPC469777
0.7258 Intermediate Similarity NPC476068
0.7183 Intermediate Similarity NPC469776
0.713 Intermediate Similarity NPC102439
0.7114 Intermediate Similarity NPC469772
0.708 Intermediate Similarity NPC295371
0.7069 Intermediate Similarity NPC63159
0.7043 Intermediate Similarity NPC104071
0.7034 Intermediate Similarity NPC32723
0.702 Intermediate Similarity NPC469773
0.7 Intermediate Similarity NPC224381
0.6986 Remote Similarity NPC481323
0.6986 Remote Similarity NPC469778
0.6892 Remote Similarity NPC135334
0.6875 Remote Similarity NPC258617
0.685 Remote Similarity NPC57484
0.6846 Remote Similarity NPC481324
0.6822 Remote Similarity NPC161717
0.681 Remote Similarity NPC112352
0.6667 Remote Similarity NPC70809
0.6667 Remote Similarity NPC295941
0.6565 Remote Similarity NPC471385
0.6557 Remote Similarity NPC481079
0.6544 Remote Similarity NPC480422
0.6457 Remote Similarity NPC133818
0.6357 Remote Similarity NPC471550
0.6288 Remote Similarity NPC473452
0.6241 Remote Similarity NPC475514
0.6167 Remote Similarity NPC469946
0.6154 Remote Similarity NPC48499
0.6107 Remote Similarity NPC191827
0.6098 Remote Similarity NPC148417
0.6066 Remote Similarity NPC309714
0.6045 Remote Similarity NPC480418
0.6043 Remote Similarity NPC102505
0.6043 Remote Similarity NPC488514
0.6031 Remote Similarity NPC475209
0.6031 Remote Similarity NPC251263
0.6031 Remote Similarity NPC480419
0.6027 Remote Similarity NPC472268
0.6016 Remote Similarity NPC101744
0.6016 Remote Similarity NPC473459
0.6016 Remote Similarity NPC46665
0.6 Remote Similarity NPC473373
0.6 Remote Similarity NPC150400
0.5959 Remote Similarity NPC297950
0.5954 Remote Similarity NPC323341
0.5932 Remote Similarity NPC29069
0.5929 Remote Similarity NPC480417
0.5926 Remote Similarity NPC13998
0.592 Remote Similarity NPC297263
0.5909 Remote Similarity NPC219180
0.587 Remote Similarity NPC309223
0.5865 Remote Similarity NPC470218
0.5833 Remote Similarity NPC475899
0.5827 Remote Similarity NPC276093
0.5814 Remote Similarity NPC31838
0.5814 Remote Similarity NPC187290
0.5809 Remote Similarity NPC286457
0.5804 Remote Similarity NPC477464
0.5793 Remote Similarity NPC475368
0.5781 Remote Similarity NPC301449
0.5781 Remote Similarity NPC601290
0.5748 Remote Similarity NPC134835
0.5742 Remote Similarity NPC472269
0.5704 Remote Similarity NPC54636
0.568 Remote Similarity NPC160415
0.5656 Remote Similarity NPC475516
0.5643 Remote Similarity NPC302543
0.5635 Remote Similarity NPC480475
0.56 Remote Similarity NPC223301
0.56 Remote Similarity NPC171544
0.5593 Remote Similarity NPC256798
0.5581 Remote Similarity NPC73318
0.5581 Remote Similarity NPC104372
0.5556 Remote Similarity NPC166422
0.5547 Remote Similarity NPC481082
0.5547 Remote Similarity NPC85154
0.5547 Remote Similarity NPC164419
0.554 Remote Similarity NPC470876
0.5522 Remote Similarity NPC123522
0.552 Remote Similarity NPC473343
0.552 Remote Similarity NPC473734
0.5517 Remote Similarity NPC8524
0.5512 Remote Similarity NPC488526
0.5504 Remote Similarity NPC486563
0.5496 Remote Similarity NPC187618
0.5479 Remote Similarity NPC33012
0.5462 Remote Similarity NPC114484
0.5455 Remote Similarity NPC90856
0.5455 Remote Similarity NPC104137
0.5455 Remote Similarity NPC26626
0.5455 Remote Similarity NPC473826
0.5442 Remote Similarity NPC480421
0.5436 Remote Similarity NPC489208
0.5426 Remote Similarity NPC222580
0.5426 Remote Similarity NPC609763
0.542 Remote Similarity NPC486564
0.542 Remote Similarity NPC324875
0.542 Remote Similarity NPC218954
0.542 Remote Similarity NPC292677
0.5414 Remote Similarity NPC75287
0.5403 Remote Similarity NPC174679
0.5403 Remote Similarity NPC235405
0.5403 Remote Similarity NPC139894
0.5403 Remote Similarity NPC279554
0.5397 Remote Similarity NPC263756
0.5397 Remote Similarity NPC213674
0.5396 Remote Similarity NPC21691
0.5391 Remote Similarity NPC10607
0.5391 Remote Similarity NPC251768
0.5391 Remote Similarity NPC164389
0.5385 Remote Similarity NPC601659
0.5379 Remote Similarity NPC80986
0.5368 Remote Similarity NPC471384
0.536 Remote Similarity NPC249848
0.536 Remote Similarity NPC107966
0.5349 Remote Similarity NPC475591
0.5349 Remote Similarity NPC236870
0.5349 Remote Similarity NPC235438
0.5333 Remote Similarity NPC313110
0.5328 Remote Similarity NPC189884
0.5328 Remote Similarity NPC138334
0.5324 Remote Similarity NPC4749
0.5312 Remote Similarity NPC30735
0.5299 Remote Similarity NPC815
0.529 Remote Similarity NPC283417
0.529 Remote Similarity NPC200049
0.5286 Remote Similarity NPC473386
0.5274 Remote Similarity NPC68767
0.5263 Remote Similarity NPC480474
0.5253 Remote Similarity NPC485563
0.5238 Remote Similarity NPC173583
0.5238 Remote Similarity NPC489209
0.5234 Remote Similarity NPC192791
0.5231 Remote Similarity NPC257964
0.5226 Remote Similarity NPC45606
0.5208 Remote Similarity NPC144644
0.5208 Remote Similarity NPC170407
0.5197 Remote Similarity NPC473884
0.5194 Remote Similarity NPC230948
0.5194 Remote Similarity NPC109588
0.5191 Remote Similarity NPC488517
0.5185 Remote Similarity NPC472270
0.5185 Remote Similarity NPC112492
0.518 Remote Similarity NPC480423
0.5169 Remote Similarity NPC237503
0.5156 Remote Similarity NPC161674
0.5154 Remote Similarity NPC159309
0.5154 Remote Similarity NPC86222
0.5149 Remote Similarity NPC96641
0.5149 Remote Similarity NPC480473
0.5149 Remote Similarity NPC163183
0.5149 Remote Similarity NPC69811
0.5143 Remote Similarity NPC471577

Similar Clinical/Approved Drugs

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules.

●  The left chart: Distribution of similarity level between NPC119592 and all drugs/candidates.
●  The right table: Most similar clinical/approved drugs (Tc>=0.5 or Top200).

Similarity Score Similarity Level Drug ID Developmental Stage
NPD

Bioactivity similarity

  Bioactivity similarity

Similar Natural Products in NPASS

Similarity level is defined by Bioactivity similarity was calculated based on bioactivity descriptors of compounds. The bioactivity descriptors were calculated by a recently developed AI algorithm Chemical Checker (CC) [Nature Biotechnology, 38:1087–1096, 2020; Nature Communications, 12:3932, 2021], which evaluated bioactivity similarities at five levels:
A: chemistry similarity;
B: biological targets similarity;
C: networks similarity;
D: cell-based bioactivity similarity;
E: similarity based on clinical data.
Those 5 categories of CC bioactivity descriptors were calculated and then subjected to manifold projection using UMAP algorithm, to project all NPs on a 2-Dimensional space. The current NP was highlighted with a small circle in the 2-D map. Below figures: left-to-right, A-to-E.

A: chemistry similarity
B: biological targets similarity
C: networks similarity
D: cell-based bioactivity similarity
E: similarity based on clinical data