Structure

Physi-Chem Properties

Molecular Weight:  782.45
Volume:  775.587
LogP:  2.279
LogD:  2.209
LogS:  -3.965
# Rotatable Bonds:  7
TPSA:  236.06
# H-Bond Aceptor:  14
# H-Bond Donor:  9
# Rings:  7
# Heavy Atoms:  14

MedChem Properties

QED Drug-Likeness Score:  0.104
Synthetic Accessibility Score:  5.923
Fsp3:  0.927
Lipinski Rule-of-5:  Rejected
Pfizer Rule:  Accepted
GSK Rule:  Rejected
BMS Rule:  1
Golden Triangle Rule:  Rejected
Chelating Alert:  0
PAINS Alert:  0

ADMET Properties (ADMETlab2.0)

ADMET: Absorption

Caco-2 Permeability:  -5.503
MDCK Permeability:  2.1091069356771186e-05
Pgp-inhibitor:  0.982
Pgp-substrate:  0.014
Human Intestinal Absorption (HIA):  0.865
20% Bioavailability (F20%):  0.039
30% Bioavailability (F30%):  0.966

ADMET: Distribution

Blood-Brain-Barrier Penetration (BBB):  0.042
Plasma Protein Binding (PPB):  82.32559204101562%
Volume Distribution (VD):  0.438
Pgp-substrate:  9.809945106506348%

ADMET: Metabolism

CYP1A2-inhibitor:  0.001
CYP1A2-substrate:  0.381
CYP2C19-inhibitor:  0.001
CYP2C19-substrate:  0.478
CYP2C9-inhibitor:  0.001
CYP2C9-substrate:  0.013
CYP2D6-inhibitor:  0.003
CYP2D6-substrate:  0.082
CYP3A4-inhibitor:  0.112
CYP3A4-substrate:  0.044

ADMET: Excretion

Clearance (CL):  1.021
Half-life (T1/2):  0.663

ADMET: Toxicity

hERG Blockers:  0.093
Human Hepatotoxicity (H-HT):  0.216
Drug-inuced Liver Injury (DILI):  0.018
AMES Toxicity:  0.094
Rat Oral Acute Toxicity:  0.098
Maximum Recommended Daily Dose:  0.524
Skin Sensitization:  0.084
Carcinogencity:  0.021
Eye Corrosion:  0.003
Eye Irritation:  0.008
Respiratory Toxicity:  0.439

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General Info & Identifiers & Properties  
Structure MOL file  
Source Organisms  
Biological Activities  
Similar NPs/Drugs  

  Natural Product: NPC256798

Natural Product ID:  NPC256798
Common Name*:   Oblonganoside M
IUPAC Name:   [(2S,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl] (1S,4aR,6aR,6aS,6bR,8aR,9R,10S,12aR,14bS)-1-hydroxy-9-(hydroxymethyl)-2,2,6a,6b,9,12a-hexamethyl-10-[(2S,3R,4S,5R)-3,4,5-trihydroxyoxan-2-yl]oxy-1,3,4,5,6,6a,7,8,8a,10,11,12,13,14b-tetradecahydropicene-4a-carboxylate
Synonyms:  
Standard InCHIKey:  SLDDOPKHRWHRBZ-PRKVZQOTSA-N
Standard InCHI:  InChI=1S/C41H66O14/c1-36(2)13-15-41(35(51)55-34-31(49)29(47)28(46)22(17-42)53-34)16-14-39(5)20(26(41)32(36)50)7-8-24-37(3)11-10-25(54-33-30(48)27(45)21(44)18-52-33)38(4,19-43)23(37)9-12-40(24,39)6/h7,21-34,42-50H,8-19H2,1-6H3/t21-,22-,23-,24-,25+,26-,27+,28-,29+,30-,31-,32+,33+,34+,37+,38+,39-,40-,41+/m1/s1
SMILES:  OC[C@H]1O[C@@H](OC(=O)[C@]23CC[C@@]4(C(=CC[C@H]5[C@@]4(C)CC[C@@H]4[C@]5(C)CC[C@@H]([C@@]4(C)CO)O[C@@H]4OC[C@H]([C@@H]([C@H]4O)O)O)[C@@H]3[C@@H](C(CC2)(C)C)O)C)[C@@H]([C@H]([C@@H]1O)O)O
Synthetic Gene Cluster:   n.a.
ChEMBL Identifier:   CHEMBL2253401
PubChem CID:   76315518
Chemical Classification**:  
  • CHEMONTID:0000000 [Organic compounds]
    • [CHEMONTID:0000012] Lipids and lipid-like molecules
      • [CHEMONTID:0000259] Prenol lipids
        • [CHEMONTID:0001553] Triterpenoids

*Note: the InCHIKey will be temporarily assigned as the "Common Name" if no IUPAC name or alternative short name is available.
**Note: the Chemical Classification was calculated by NPClassifier Version 1.5. Reference: PMID:34662515.

  Species Source

Organism ID Organism Name Taxonomy Level Family SuperKingdom Isolation Part Collection Location Collection Time Reference
NPO26650 Terminalia chebula Species Combretaceae Eukaryota n.a. n.a. n.a. PMID[11520216]
NPO26261 Streptomyces tendae Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[27642865]
NPO26622 Taraxacum officinale Species Asteraceae Eukaryota Root n.a. n.a. Database[FooDB]
NPO26622 Taraxacum officinale Species Asteraceae Eukaryota n.a. n.a. Database[FooDB]
NPO26622 Taraxacum officinale Species Asteraceae Eukaryota n.a. n.a. Database[FooDB]
NPO26622 Taraxacum officinale Species Asteraceae Eukaryota Leaf n.a. n.a. Database[FooDB]
NPO26622 Taraxacum officinale Species Asteraceae Eukaryota Plant n.a. n.a. Database[FooDB]
NPO26622 Taraxacum officinale Species Asteraceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO26650 Terminalia chebula Species Combretaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO26622 Taraxacum officinale Species Asteraceae Eukaryota n.a. n.a. Database[Phenol-Explorer]
NPO26650 Terminalia chebula Species Combretaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO26622 Taraxacum officinale Species Asteraceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO26622 Taraxacum officinale Species Asteraceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO26650 Terminalia chebula Species Combretaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO26650 Terminalia chebula Species Combretaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO26622 Taraxacum officinale Species Asteraceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO26650 Terminalia chebula Species Combretaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO25649 Calliandra haematocephala Species Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO25339 Trillium smallii Species Melanthiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO26261 Streptomyces tendae Species Streptomycetaceae Bacteria n.a. n.a. n.a. Database[UNPD]
NPO26345 Sideroxylon tomentosum Species Sapotaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO26283 Streptomyces djakartensis Species Streptomycetaceae Bacteria n.a. n.a. n.a. Database[UNPD]
NPO25992 Lasallia papulosa Species Umbilicariaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO9182 Lychnophora passerina Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO28950 Angelonia integerrima Species Plantaginaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO26622 Taraxacum officinale Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO26048 Grateloupia elliptica Species Halymeniaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO4318 Aspergillus cristatus Species Aspergillaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO26399 Crepidiastrum lanceolatum Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO25765 Dryopteris aemula Species Dryopteridaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO24698 Protium unifoliolatum Species Burseraceae Eukaryota n.a. n.a. n.a. Database[UNPD]

☑ Note for Reference:
In addition to directly collecting NP source organism data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated them from below databases:
☉ UNPD: Universal Natural Products Database [PMID: 23638153].
☉ StreptomeDB: a database of streptomycetes natural products [PMID: 33051671].
☉ TM-MC: a database of medicinal materials and chemical compounds in Northeast Asian traditional medicine [PMID: 26156871].
☉ TCM@Taiwan: a Traditional Chinese Medicine database [PMID: 21253603].
☉ TCMID: a Traditional Chinese Medicine database [PMID: 29106634].
☉ TCMSP: The traditional Chinese medicine systems pharmacology database and analysis platform [PMID: 24735618].
☉ HerDing: a herb recommendation system to treat diseases using genes and chemicals [PMID: 26980517].
☉ MetaboLights: a metabolomics database [PMID: 27010336].
☉ FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].

  NP Quantity Composition/Concentration

Organism ID NP ID Organism Material Preparation Organism Part NP Quantity (Standard) NP Quantity (Minimum) NP Quantity (Maximum) Quantity Unit Reference

☑ Note for Reference:
In addition to directly collecting NP quantitative data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated NP quantitative records for specific NP domains (e.g., NPS from foods or herbs) from domain-specific databases. These databases include:
☉ DUKE: Dr. Duke's Phytochemical and Ethnobotanical Databases.
☉ PHENOL EXPLORER: is the first comprehensive database on polyphenol content in foods [PMID: 24103452], its homepage can be accessed at here.
☉ FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].

  Biological Activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference
NPT786 Organism Tobacco mosaic virus Tobacco mosaic virus EC50 = 85.0 ug.mL-1 PMID[550274]
NPT786 Organism Tobacco mosaic virus Tobacco mosaic virus Inhibition = 5.2 % PMID[550274]
NPT786 Organism Tobacco mosaic virus Tobacco mosaic virus Inhibition = 32.7 % PMID[550274]
NPT786 Organism Tobacco mosaic virus Tobacco mosaic virus Inhibition = 61.5 % PMID[550274]
NPT786 Organism Tobacco mosaic virus Tobacco mosaic virus Inhibition = 78.5 % PMID[550274]
NPT786 Organism Tobacco mosaic virus Tobacco mosaic virus Inhibition = 85.3 % PMID[550274]

☑ Note for Activity Records:
☉ The quantitative biological activities were primarily integrated from ChEMBL (Version-30) database and were also directly collected from PubMed literature. PubMed PMID was provided as the reference link for each activity record.

  Chemically structural similarity: I. Similar Active Natural Products in NPASS

Top-200 similar NPs were calculated against the active-NP-set (includes 4,3285 NPs with experimentally-derived bioactivity available in NPASS)

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules. Tc lies between [0, 1] where '1' indicates the highest similarity. What is Tanimoto coefficient

●  The left chart: Distribution of similarity level between NPC256798 and all remaining natural products in the NPASS database.
●  The right table: Most similar natural products (Tc>=0.56 or Top200).

Similarity Score Similarity Level Natural Product ID
1.0 High Similarity NPC128925
0.9904 High Similarity NPC47063
0.9904 High Similarity NPC138334
0.9904 High Similarity NPC189884
0.9904 High Similarity NPC204458
0.9903 High Similarity NPC235841
0.9903 High Similarity NPC191763
0.9903 High Similarity NPC473481
0.9903 High Similarity NPC211798
0.9903 High Similarity NPC297208
0.9903 High Similarity NPC30397
0.9903 High Similarity NPC108748
0.9808 High Similarity NPC116794
0.9808 High Similarity NPC46388
0.9808 High Similarity NPC37739
0.9806 High Similarity NPC279554
0.9806 High Similarity NPC90856
0.9806 High Similarity NPC474589
0.9806 High Similarity NPC59804
0.9806 High Similarity NPC174679
0.9806 High Similarity NPC127056
0.9806 High Similarity NPC475296
0.9806 High Similarity NPC136877
0.9806 High Similarity NPC274507
0.9806 High Similarity NPC270667
0.9806 High Similarity NPC29069
0.9806 High Similarity NPC56713
0.9806 High Similarity NPC164194
0.9717 High Similarity NPC161674
0.9717 High Similarity NPC160415
0.9717 High Similarity NPC58448
0.9717 High Similarity NPC471384
0.9714 High Similarity NPC271138
0.9714 High Similarity NPC258885
0.9714 High Similarity NPC124296
0.9714 High Similarity NPC269315
0.9712 High Similarity NPC179434
0.9712 High Similarity NPC164419
0.9709 High Similarity NPC306746
0.9709 High Similarity NPC204407
0.9709 High Similarity NPC237503
0.9709 High Similarity NPC57362
0.9709 High Similarity NPC167383
0.9626 High Similarity NPC110633
0.9626 High Similarity NPC136768
0.9626 High Similarity NPC148417
0.9626 High Similarity NPC68175
0.9623 High Similarity NPC475633
0.9619 High Similarity NPC80843
0.9619 High Similarity NPC1046
0.9619 High Similarity NPC471383
0.9619 High Similarity NPC10320
0.9619 High Similarity NPC139044
0.9619 High Similarity NPC257468
0.9619 High Similarity NPC102439
0.9619 High Similarity NPC469946
0.9619 High Similarity NPC139894
0.9619 High Similarity NPC475516
0.9619 High Similarity NPC104400
0.9619 High Similarity NPC104071
0.9619 High Similarity NPC324875
0.9619 High Similarity NPC276093
0.9619 High Similarity NPC292677
0.9619 High Similarity NPC79718
0.9619 High Similarity NPC475504
0.9619 High Similarity NPC473383
0.9619 High Similarity NPC109079
0.9619 High Similarity NPC101744
0.9619 High Similarity NPC473373
0.9615 High Similarity NPC476884
0.9615 High Similarity NPC199457
0.9615 High Similarity NPC476882
0.9615 High Similarity NPC68419
0.9615 High Similarity NPC102914
0.9615 High Similarity NPC476887
0.9615 High Similarity NPC108709
0.9615 High Similarity NPC78046
0.9615 High Similarity NPC476886
0.9615 High Similarity NPC476880
0.9615 High Similarity NPC7870
0.9615 High Similarity NPC476881
0.9615 High Similarity NPC269095
0.9615 High Similarity NPC476885
0.9615 High Similarity NPC110139
0.9615 High Similarity NPC476883
0.9615 High Similarity NPC75747
0.9612 High Similarity NPC28198
0.9612 High Similarity NPC284807
0.9612 High Similarity NPC177246
0.9612 High Similarity NPC476123
0.9537 High Similarity NPC36831
0.9533 High Similarity NPC291903
0.9533 High Similarity NPC37134
0.9528 High Similarity NPC475208
0.9528 High Similarity NPC323341
0.9528 High Similarity NPC150400
0.9528 High Similarity NPC166422
0.9528 High Similarity NPC174720
0.9528 High Similarity NPC96641
0.9528 High Similarity NPC241909
0.9528 High Similarity NPC163183
0.9528 High Similarity NPC295823
0.9528 High Similarity NPC238935
0.9528 High Similarity NPC473826
0.9528 High Similarity NPC73318
0.9528 High Similarity NPC309714
0.9528 High Similarity NPC134835
0.9528 High Similarity NPC473343
0.9528 High Similarity NPC46665
0.9528 High Similarity NPC114304
0.9528 High Similarity NPC251263
0.9528 High Similarity NPC475287
0.9528 High Similarity NPC475467
0.9528 High Similarity NPC155410
0.9528 High Similarity NPC114287
0.9528 High Similarity NPC151543
0.9528 High Similarity NPC133818
0.9528 High Similarity NPC219180
0.9528 High Similarity NPC192600
0.9524 High Similarity NPC31839
0.9519 High Similarity NPC127853
0.9519 High Similarity NPC137917
0.9515 High Similarity NPC283849
0.9515 High Similarity NPC473538
0.9444 High Similarity NPC300419
0.9444 High Similarity NPC473824
0.9444 High Similarity NPC475119
0.9439 High Similarity NPC227551
0.9439 High Similarity NPC119592
0.9439 High Similarity NPC4328
0.9439 High Similarity NPC41061
0.9439 High Similarity NPC469782
0.9439 High Similarity NPC164389
0.9439 High Similarity NPC65105
0.9439 High Similarity NPC161717
0.9439 High Similarity NPC43550
0.9439 High Similarity NPC250247
0.9439 High Similarity NPC471550
0.9439 High Similarity NPC76972
0.9439 High Similarity NPC67857
0.9439 High Similarity NPC476068
0.9439 High Similarity NPC60557
0.9439 High Similarity NPC123199
0.9439 High Similarity NPC79643
0.9439 High Similarity NPC473714
0.9439 High Similarity NPC475486
0.9439 High Similarity NPC54636
0.9439 High Similarity NPC71065
0.9439 High Similarity NPC309907
0.9439 High Similarity NPC57484
0.9439 High Similarity NPC475140
0.9439 High Similarity NPC475160
0.9439 High Similarity NPC294453
0.9439 High Similarity NPC70809
0.9439 High Similarity NPC204414
0.9439 High Similarity NPC293330
0.9439 High Similarity NPC471385
0.9439 High Similarity NPC261506
0.9439 High Similarity NPC100639
0.9439 High Similarity NPC298034
0.9439 High Similarity NPC236638
0.9439 High Similarity NPC202828
0.9439 High Similarity NPC224381
0.9439 High Similarity NPC305981
0.9434 High Similarity NPC471967
0.9434 High Similarity NPC161434
0.9434 High Similarity NPC48249
0.9434 High Similarity NPC195132
0.9429 High Similarity NPC242611
0.9429 High Similarity NPC220984
0.9423 High Similarity NPC285576
0.9417 High Similarity NPC475611
0.9364 High Similarity NPC268184
0.9358 High Similarity NPC105800
0.9358 High Similarity NPC232237
0.9358 High Similarity NPC109588
0.9352 High Similarity NPC26626
0.9352 High Similarity NPC305267
0.9352 High Similarity NPC288205
0.9352 High Similarity NPC51465
0.9352 High Similarity NPC75287
0.9352 High Similarity NPC476992
0.934 High Similarity NPC190837
0.932 High Similarity NPC173583
0.9279 High Similarity NPC75417
0.9273 High Similarity NPC473884
0.9273 High Similarity NPC469945
0.9273 High Similarity NPC309780
0.9273 High Similarity NPC207738
0.9273 High Similarity NPC11551
0.9273 High Similarity NPC475171
0.9273 High Similarity NPC157868
0.9273 High Similarity NPC35405
0.9273 High Similarity NPC208381
0.9273 High Similarity NPC192791
0.9273 High Similarity NPC114441
0.9273 High Similarity NPC6377
0.9273 High Similarity NPC180550
0.9273 High Similarity NPC214484
0.9273 High Similarity NPC472949

  Chemically structural similarity: II. Similar Clinical/Approved Drugs

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules.

●  The left chart: Distribution of similarity level between NPC256798 and all drugs/candidates.
●  The right table: Most similar clinical/approved drugs (Tc>=0.56 or Top200).

Similarity Score Similarity Level Drug ID Developmental Stage
0.9091 High Similarity NPD8295 Clinical (unspecified phase)
0.8972 High Similarity NPD8132 Clinical (unspecified phase)
0.8947 High Similarity NPD8328 Phase 3
0.8319 Intermediate Similarity NPD8133 Approved
0.8108 Intermediate Similarity NPD6412 Phase 2
0.8037 Intermediate Similarity NPD7902 Approved
0.8036 Intermediate Similarity NPD6686 Approved
0.7983 Intermediate Similarity NPD8033 Approved
0.7925 Intermediate Similarity NPD7748 Approved
0.7899 Intermediate Similarity NPD8377 Approved
0.7899 Intermediate Similarity NPD8294 Approved
0.7869 Intermediate Similarity NPD7507 Approved
0.7833 Intermediate Similarity NPD8516 Approved
0.7833 Intermediate Similarity NPD8378 Approved
0.7833 Intermediate Similarity NPD8513 Phase 3
0.7833 Intermediate Similarity NPD8515 Approved
0.7833 Intermediate Similarity NPD8335 Approved
0.7833 Intermediate Similarity NPD8380 Approved
0.7833 Intermediate Similarity NPD8517 Approved
0.7833 Intermediate Similarity NPD8379 Approved
0.7833 Intermediate Similarity NPD8296 Approved
0.7757 Intermediate Similarity NPD7901 Clinical (unspecified phase)
0.7757 Intermediate Similarity NPD7900 Approved
0.7736 Intermediate Similarity NPD7515 Phase 2
0.768 Intermediate Similarity NPD7319 Approved
0.76 Intermediate Similarity NPD7736 Approved
0.7583 Intermediate Similarity NPD7328 Approved
0.7583 Intermediate Similarity NPD7327 Approved
0.7521 Intermediate Similarity NPD7516 Approved
0.7407 Intermediate Similarity NPD8034 Phase 2
0.7407 Intermediate Similarity NPD8035 Phase 2
0.7398 Intermediate Similarity NPD7503 Approved
0.7381 Intermediate Similarity NPD8293 Discontinued
0.7373 Intermediate Similarity NPD8413 Clinical (unspecified phase)
0.7339 Intermediate Similarity NPD6399 Phase 3
0.7304 Intermediate Similarity NPD8170 Clinical (unspecified phase)
0.72 Intermediate Similarity NPD6370 Approved
0.7168 Intermediate Similarity NPD7638 Approved
0.7167 Intermediate Similarity NPD6882 Approved
0.7167 Intermediate Similarity NPD8297 Approved
0.7119 Intermediate Similarity NPD5345 Clinical (unspecified phase)
0.7105 Intermediate Similarity NPD7639 Approved
0.7105 Intermediate Similarity NPD7640 Approved
0.7087 Intermediate Similarity NPD7492 Approved
0.7087 Intermediate Similarity NPD7645 Phase 2
0.7073 Intermediate Similarity NPD6009 Approved
0.7073 Intermediate Similarity NPD7115 Discovery
0.7059 Intermediate Similarity NPD6373 Approved
0.7059 Intermediate Similarity NPD4061 Clinical (unspecified phase)
0.7059 Intermediate Similarity NPD6372 Approved
0.704 Intermediate Similarity NPD6059 Approved
0.704 Intermediate Similarity NPD6054 Approved
0.704 Intermediate Similarity NPD6319 Approved
0.7031 Intermediate Similarity NPD6616 Approved
0.7009 Intermediate Similarity NPD7520 Clinical (unspecified phase)
0.7008 Intermediate Similarity NPD6067 Discontinued
0.7 Intermediate Similarity NPD5955 Clinical (unspecified phase)
0.6977 Remote Similarity NPD8074 Phase 3
0.6977 Remote Similarity NPD7078 Approved
0.6967 Remote Similarity NPD4632 Approved
0.6949 Remote Similarity NPD7128 Approved
0.6949 Remote Similarity NPD6675 Approved
0.6949 Remote Similarity NPD6402 Approved
0.6949 Remote Similarity NPD5739 Approved
0.6942 Remote Similarity NPD6649 Approved
0.6942 Remote Similarity NPD6650 Approved
0.6937 Remote Similarity NPD6411 Approved
0.6875 Remote Similarity NPD8171 Discontinued
0.687 Remote Similarity NPD4225 Approved
0.685 Remote Similarity NPD6015 Approved
0.685 Remote Similarity NPD6016 Approved
0.6847 Remote Similarity NPD46 Approved
0.6847 Remote Similarity NPD6698 Approved
0.6833 Remote Similarity NPD6881 Approved
0.6833 Remote Similarity NPD6899 Approved
0.6833 Remote Similarity NPD7320 Approved
0.6807 Remote Similarity NPD6008 Approved
0.6803 Remote Similarity NPD8130 Phase 1
0.6797 Remote Similarity NPD5988 Approved
0.6789 Remote Similarity NPD3618 Phase 1
0.6759 Remote Similarity NPD4786 Approved
0.6757 Remote Similarity NPD6101 Approved
0.6757 Remote Similarity NPD5764 Clinical (unspecified phase)
0.675 Remote Similarity NPD5697 Approved
0.675 Remote Similarity NPD5701 Approved
0.675 Remote Similarity NPD5954 Clinical (unspecified phase)
0.6729 Remote Similarity NPD3667 Approved
0.6724 Remote Similarity NPD8029 Clinical (unspecified phase)
0.6721 Remote Similarity NPD7102 Approved
0.6721 Remote Similarity NPD7290 Approved
0.6721 Remote Similarity NPD6883 Approved
0.6667 Remote Similarity NPD7513 Clinical (unspecified phase)
0.6667 Remote Similarity NPD6869 Approved
0.6667 Remote Similarity NPD3669 Approved
0.6667 Remote Similarity NPD6847 Approved
0.6667 Remote Similarity NPD3670 Clinical (unspecified phase)
0.6667 Remote Similarity NPD6617 Approved
0.6639 Remote Similarity NPD6013 Approved
0.6639 Remote Similarity NPD6014 Approved
0.6639 Remote Similarity NPD6012 Approved
0.6638 Remote Similarity NPD6083 Phase 2
0.6638 Remote Similarity NPD6084 Phase 2
0.6637 Remote Similarity NPD7983 Approved
0.6615 Remote Similarity NPD7604 Phase 2
0.6607 Remote Similarity NPD7285 Clinical (unspecified phase)
0.6607 Remote Similarity NPD5328 Approved
0.6593 Remote Similarity NPD8449 Approved
0.6589 Remote Similarity NPD5983 Phase 2
0.6589 Remote Similarity NPD6921 Approved
0.6579 Remote Similarity NPD5779 Approved
0.6579 Remote Similarity NPD5778 Approved
0.6577 Remote Similarity NPD3573 Approved
0.6557 Remote Similarity NPD6011 Approved
0.6555 Remote Similarity NPD7632 Discontinued
0.6544 Remote Similarity NPD8450 Suspended
0.6541 Remote Similarity NPD6033 Approved
0.6532 Remote Similarity NPD6401 Clinical (unspecified phase)
0.6515 Remote Similarity NPD6336 Discontinued
0.6496 Remote Similarity NPD4755 Approved
0.6491 Remote Similarity NPD6079 Approved
0.6486 Remote Similarity NPD7334 Approved
0.6486 Remote Similarity NPD5330 Approved
0.6486 Remote Similarity NPD7146 Approved
0.6486 Remote Similarity NPD7521 Approved
0.6486 Remote Similarity NPD6409 Approved
0.6486 Remote Similarity NPD6684 Approved
0.6481 Remote Similarity NPD1780 Approved
0.6481 Remote Similarity NPD1779 Approved
0.6457 Remote Similarity NPD6940 Discontinued
0.6452 Remote Similarity NPD4634 Approved
0.6441 Remote Similarity NPD5696 Approved
0.6439 Remote Similarity NPD8340 Approved
0.6439 Remote Similarity NPD8342 Approved
0.6439 Remote Similarity NPD8341 Approved
0.6439 Remote Similarity NPD8299 Approved
0.6435 Remote Similarity NPD4202 Approved
0.641 Remote Similarity NPD4697 Phase 3
0.6406 Remote Similarity NPD8137 Clinical (unspecified phase)
0.6391 Remote Similarity NPD8451 Approved
0.6389 Remote Similarity NPD7525 Registered
0.6387 Remote Similarity NPD5286 Approved
0.6387 Remote Similarity NPD5285 Approved
0.6387 Remote Similarity NPD4700 Approved
0.6387 Remote Similarity NPD4696 Approved
0.6372 Remote Similarity NPD6672 Approved
0.6372 Remote Similarity NPD5737 Approved
0.6372 Remote Similarity NPD6903 Approved
0.6357 Remote Similarity NPD7641 Discontinued
0.6355 Remote Similarity NPD6697 Approved
0.6355 Remote Similarity NPD6114 Approved
0.6355 Remote Similarity NPD6115 Approved
0.6355 Remote Similarity NPD6118 Approved
0.6345 Remote Similarity NPD7625 Phase 1
0.6343 Remote Similarity NPD8448 Approved
0.6333 Remote Similarity NPD5344 Discontinued
0.6328 Remote Similarity NPD6274 Approved
0.6325 Remote Similarity NPD6356 Clinical (unspecified phase)
0.6325 Remote Similarity NPD5695 Phase 3
0.6324 Remote Similarity NPD8391 Approved
0.6324 Remote Similarity NPD8392 Approved
0.6324 Remote Similarity NPD8390 Approved
0.6308 Remote Similarity NPD7100 Approved
0.6308 Remote Similarity NPD7101 Approved
0.6306 Remote Similarity NPD3666 Approved
0.6306 Remote Similarity NPD3133 Approved
0.6306 Remote Similarity NPD3665 Phase 1
0.6306 Remote Similarity NPD3668 Phase 3
0.6296 Remote Similarity NPD8336 Approved
0.6296 Remote Similarity NPD8337 Approved
0.6281 Remote Similarity NPD5225 Approved
0.6281 Remote Similarity NPD5224 Approved
0.6281 Remote Similarity NPD5211 Phase 2
0.6281 Remote Similarity NPD5226 Approved
0.6281 Remote Similarity NPD4633 Approved
0.6271 Remote Similarity NPD5220 Clinical (unspecified phase)
0.6271 Remote Similarity NPD5222 Approved
0.6271 Remote Similarity NPD7839 Suspended
0.6271 Remote Similarity NPD5221 Approved
0.6262 Remote Similarity NPD6116 Phase 1
0.6261 Remote Similarity NPD7838 Discovery
0.626 Remote Similarity NPD4767 Approved
0.626 Remote Similarity NPD4768 Approved
0.6241 Remote Similarity NPD7829 Approved
0.6241 Remote Similarity NPD7830 Approved
0.6231 Remote Similarity NPD6335 Approved
0.623 Remote Similarity NPD5174 Approved
0.623 Remote Similarity NPD5175 Approved
0.622 Remote Similarity NPD6053 Discontinued
0.6218 Remote Similarity NPD5173 Approved
0.6212 Remote Similarity NPD8274 Clinical (unspecified phase)
0.6212 Remote Similarity NPD6909 Approved
0.6212 Remote Similarity NPD6908 Approved
0.621 Remote Similarity NPD7899 Clinical (unspecified phase)
0.6207 Remote Similarity NPD7637 Suspended
0.6202 Remote Similarity NPD6868 Approved
0.6198 Remote Similarity NPD5223 Approved
0.619 Remote Similarity NPD6371 Approved
0.6179 Remote Similarity NPD5141 Approved
0.6174 Remote Similarity NPD4753 Phase 2
0.6168 Remote Similarity NPD6117 Approved

  Bioactivity similarity: Similar Natural Products in NPASS

Bioactivity similarity was calculated based on bioactivity descriptors of compounds. The bioactivity descriptors were calculated by a recently developed AI algorithm Chemical Checker (CC) [Nature Biotechnology, 38:1087–1096, 2020; Nature Communications, 12:3932, 2021], which evaluated bioactivity similarities at five levels:
☉ A: chemistry similarity;
☉ B: biological targets similarity;
☉ C: networks similarity;
☉ D: cell-based bioactivity similarity;
☉ E: similarity based on clinical data.

Those 5 categories of CC bioactivity descriptors were calculated and then subjected to manifold projection using UMAP algorithm, to project all NPs on a 2-Dimensional space. The current NP was highlighted with a small circle in the 2-D map. Below figures: left-to-right, A-to-E.

A: chemistry similarity
B: biological targets similarity
C: networks similarity
D: cell-based bioactivity similarity
E: similarity based on clinical data