Structure

Physi-Chem Properties

Molecular Weight:  1964.94
Volume:  1880.033
LogP:  2.326
LogD:  1.266
LogS:  -2.301
# Rotatable Bonds:  34
TPSA:  662.41
# H-Bond Aceptor:  43
# H-Bond Donor:  22
# Rings:  13
# Heavy Atoms:  43

MedChem Properties

QED Drug-Likeness Score:  0.01
Synthetic Accessibility Score:  8.569
Fsp3:  0.862
Lipinski Rule-of-5:  Rejected
Pfizer Rule:  Accepted
GSK Rule:  Rejected
BMS Rule:  1
Golden Triangle Rule:  Rejected
Chelating Alert:  0
PAINS Alert:  0

ADMET Properties (ADMETlab2.0)

ADMET: Absorption

Caco-2 Permeability:  -5.912
MDCK Permeability:  0.0006559329922311008
Pgp-inhibitor:  0.999
Pgp-substrate:  0.999
Human Intestinal Absorption (HIA):  1.0
20% Bioavailability (F20%):  0.001
30% Bioavailability (F30%):  1.0

ADMET: Distribution

Blood-Brain-Barrier Penetration (BBB):  0.437
Plasma Protein Binding (PPB):  49.59503936767578%
Volume Distribution (VD):  -0.698
Pgp-substrate:  10.464550971984863%

ADMET: Metabolism

CYP1A2-inhibitor:  0.0
CYP1A2-substrate:  0.067
CYP2C19-inhibitor:  0.0
CYP2C19-substrate:  0.048
CYP2C9-inhibitor:  0.0
CYP2C9-substrate:  0.0
CYP2D6-inhibitor:  0.0
CYP2D6-substrate:  0.011
CYP3A4-inhibitor:  0.102
CYP3A4-substrate:  0.001

ADMET: Excretion

Clearance (CL):  -1.954
Half-life (T1/2):  0.608

ADMET: Toxicity

hERG Blockers:  0.236
Human Hepatotoxicity (H-HT):  0.268
Drug-inuced Liver Injury (DILI):  0.013
AMES Toxicity:  0.033
Rat Oral Acute Toxicity:  0.017
Maximum Recommended Daily Dose:  0.973
Skin Sensitization:  0.406
Carcinogencity:  0.008
Eye Corrosion:  0.003
Eye Irritation:  0.005
Respiratory Toxicity:  0.058

Download Data

Data Type Select
General Info & Identifiers & Properties  
Structure MOL file  
Source Organisms  
Biological Activities  
Similar NPs/Drugs  

  Natural Product: NPC472270

Natural Product ID:  NPC472270
Common Name*:   XTKIFEUKAOFVDD-FJZFINPGSA-N
IUPAC Name:   n.a.
Synonyms:  
Standard InCHIKey:  XTKIFEUKAOFVDD-FJZFINPGSA-N
Standard InCHI:  InChI=1S/C94H148O43/c1-15-89(10,118)25-17-19-40(3)76(115)131-72-56(101)41(4)126-84(75(72)132-77(116)43(33-95)20-18-26-90(11,119)16-2)125-39-51-61(106)63(108)74(136-81-68(113)64(109)70(42(5)127-81)133-80-69(114)71(49(99)37-122-80)134-78-65(110)57(102)46(96)34-120-78)85(129-51)137-86(117)94-30-29-87(6,7)31-45(94)44-21-22-53-91(12)27-24-55(88(8,9)52(91)23-28-92(53,13)93(44,14)32-54(94)100)130-82-67(112)62(107)60(105)50(128-82)38-124-83-73(59(104)48(98)36-123-83)135-79-66(111)58(103)47(97)35-121-79/h15-16,19-21,41-42,45-75,78-85,95-114,118-119H,1-2,17-18,22-39H2,3-14H3/b40-19+,43-20+/t41-,42-,45-,46+,47+,48-,49+,50+,51+,52-,53+,54+,55-,56-,57-,58-,59-,60+,61+,62-,63-,64-,65+,66+,67+,68+,69+,70-,71-,72+,73+,74+,75+,78-,79-,80-,81-,82-,83-,84+,85-,89-,90?,91-,92+,93+,94+/m0/s1
SMILES:  CC1C(C(C(C(O1)OCC2C(C(C(C(O2)OC(=O)C34CCC(CC3C5=CCC6C7(CCC(C(C7CCC6(C5(CC4O)C)C)(C)C)OC8C(C(C(C(O8)COC9C(C(C(CO9)O)O)OC1C(C(C(CO1)O)O)O)O)O)O)C)(C)C)OC1C(C(C(C(O1)C)OC1C(C(C(CO1)O)OC1C(C(C(CO1)O)O)O)O)O)O)O)O)OC(=O)C(=CCCC(C)(C=C)O)CO)OC(=O)C(=CCCC(C)(C=C)O)C)O
Synthetic Gene Cluster:   n.a.
ChEMBL Identifier:   CHEMBL3357152
PubChem CID:   n.a.
Chemical Classification**:  
  • CHEMONTID:0000000 [Organic compounds]
    • [CHEMONTID:0000012] Lipids and lipid-like molecules
      • [CHEMONTID:0000259] Prenol lipids
        • [CHEMONTID:0002049] Terpene glycosides
          • [CHEMONTID:0001580] Triterpene glycosides
            • [CHEMONTID:0002358] Triterpene saponins

*Note: the InCHIKey will be temporarily assigned as the "Common Name" if no IUPAC name or alternative short name is available.
**Note: the Chemical Classification was calculated by NPClassifier Version 1.5. Reference: PMID:34662515.

  Species Source

Organism ID Organism Name Taxonomy Level Family SuperKingdom Isolation Part Collection Location Collection Time Reference
NPO20608 Gleditsia sinensis Species Fabaceae Eukaryota anomalous fruits n.a. n.a. PMID[25442304]
NPO20608 Gleditsia sinensis Species Fabaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO20608 Gleditsia sinensis Species Fabaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO20608 Gleditsia sinensis Species Fabaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO20608 Gleditsia sinensis Species Fabaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO20608 Gleditsia sinensis Species Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]

☑ Note for Reference:
In addition to directly collecting NP source organism data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated them from below databases:
UNPD: Universal Natural Products Database [PMID: 23638153].
StreptomeDB: a database of streptomycetes natural products [PMID: 33051671].
TM-MC: a database of medicinal materials and chemical compounds in Northeast Asian traditional medicine [PMID: 26156871].
TCM@Taiwan: a Traditional Chinese Medicine database [PMID: 21253603].
TCMID: a Traditional Chinese Medicine database [PMID: 29106634].
TCMSP: The traditional Chinese medicine systems pharmacology database and analysis platform [PMID: 24735618].
HerDing: a herb recommendation system to treat diseases using genes and chemicals [PMID: 26980517].
MetaboLights: a metabolomics database [PMID: 27010336].
FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].

  NP Quantity Composition/Concentration

Organism ID NP ID Organism Material Preparation Organism Part NP Quantity (Standard) NP Quantity (Minimum) NP Quantity (Maximum) Quantity Unit Reference

☑ Note for Reference:
In addition to directly collecting NP quantitative data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated NP quantitative records for specific NP domains (e.g., NPS from foods or herbs) from domain-specific databases. These databases include:
DUKE: Dr. Duke's Phytochemical and Ethnobotanical Databases.
PHENOL EXPLORER: is the first comprehensive database on polyphenol content in foods [PMID: 24103452], its homepage can be accessed at here.
FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].

  Biological Activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference
NPT380 Cell Line U-251 Homo sapiens Activity = 29.22 % PMID[568554]
NPT76 Cell Line C6 Rattus norvegicus Activity = 26.53 % PMID[568554]
NPT380 Cell Line U-251 Homo sapiens IC50 = 43100.0 nM PMID[568554]
NPT76 Cell Line C6 Rattus norvegicus IC50 = 30260.0 nM PMID[568554]

☑ Note for Activity Records:
☉ The quantitative biological activities were primarily integrated from ChEMBL (Version-30) database and were also directly collected from PubMed literature. PubMed PMID was provided as the reference link for each activity record.

  Chemically structural similarity: I. Similar Active Natural Products in NPASS

Top-200 similar NPs were calculated against the active-NP-set (includes 4,3285 NPs with experimentally-derived bioactivity available in NPASS)

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules. Tc lies between [0, 1] where '1' indicates the highest similarity. What is Tanimoto coefficient

●  The left chart: Distribution of similarity level between NPC472270 and all remaining natural products in the NPASS database.
●  The right table: Most similar natural products (Tc>=0.56 or Top200).

Similarity Score Similarity Level Natural Product ID
1.0 High Similarity NPC472269
1.0 High Similarity NPC23020
1.0 High Similarity NPC112492
1.0 High Similarity NPC472268
0.9829 High Similarity NPC297950
0.975 High Similarity NPC475177
0.975 High Similarity NPC324933
0.975 High Similarity NPC233223
0.975 High Similarity NPC183816
0.975 High Similarity NPC319719
0.975 High Similarity NPC475444
0.975 High Similarity NPC473679
0.975 High Similarity NPC322904
0.975 High Similarity NPC196874
0.9667 High Similarity NPC43589
0.9667 High Similarity NPC222951
0.9667 High Similarity NPC300655
0.9667 High Similarity NPC311178
0.95 High Similarity NPC220838
0.95 High Similarity NPC45606
0.9417 High Similarity NPC470516
0.9153 High Similarity NPC470915
0.9153 High Similarity NPC471577
0.9153 High Similarity NPC470911
0.9153 High Similarity NPC470517
0.9145 High Similarity NPC475514
0.9145 High Similarity NPC85154
0.9145 High Similarity NPC69811
0.9145 High Similarity NPC473452
0.9145 High Similarity NPC8524
0.9145 High Similarity NPC470876
0.9145 High Similarity NPC286457
0.9145 High Similarity NPC475209
0.9145 High Similarity NPC123522
0.9145 High Similarity NPC220160
0.9145 High Similarity NPC309223
0.9145 High Similarity NPC102505
0.9145 High Similarity NPC191827
0.9145 High Similarity NPC33012
0.9145 High Similarity NPC104137
0.9113 High Similarity NPC312650
0.9113 High Similarity NPC476776
0.9106 High Similarity NPC47995
0.9106 High Similarity NPC265841
0.9076 High Similarity NPC476127
0.9076 High Similarity NPC268184
0.9076 High Similarity NPC476150
0.9076 High Similarity NPC476991
0.9068 High Similarity NPC470515
0.9068 High Similarity NPC471548
0.9068 High Similarity NPC237191
0.906 High Similarity NPC75287
0.906 High Similarity NPC305267
0.906 High Similarity NPC288205
0.906 High Similarity NPC51465
0.906 High Similarity NPC476992
0.906 High Similarity NPC26626
0.9048 High Similarity NPC279915
0.9048 High Similarity NPC110700
0.904 High Similarity NPC225791
0.904 High Similarity NPC476779
0.9032 High Similarity NPC476780
0.9032 High Similarity NPC476775
0.9032 High Similarity NPC271610
0.9032 High Similarity NPC476774
0.9024 High Similarity NPC470476
0.9024 High Similarity NPC470475
0.9 High Similarity NPC275225
0.9 High Similarity NPC51099
0.9 High Similarity NPC293031
0.9 High Similarity NPC68767
0.8992 High Similarity NPC473386
0.8992 High Similarity NPC25663
0.8992 High Similarity NPC51564
0.8992 High Similarity NPC135849
0.8983 High Similarity NPC471580
0.8983 High Similarity NPC471547
0.8983 High Similarity NPC473824
0.8983 High Similarity NPC473405
0.8983 High Similarity NPC475119
0.8974 High Similarity NPC298034
0.8974 High Similarity NPC100639
0.8974 High Similarity NPC4328
0.8974 High Similarity NPC43550
0.8974 High Similarity NPC164389
0.8974 High Similarity NPC236638
0.8974 High Similarity NPC309907
0.8974 High Similarity NPC294453
0.8974 High Similarity NPC161717
0.8974 High Similarity NPC475486
0.8974 High Similarity NPC476068
0.8974 High Similarity NPC473714
0.8974 High Similarity NPC60557
0.8974 High Similarity NPC65105
0.8974 High Similarity NPC123199
0.8974 High Similarity NPC475160
0.8974 High Similarity NPC224381
0.8974 High Similarity NPC79643
0.8974 High Similarity NPC204414
0.8974 High Similarity NPC227551
0.8974 High Similarity NPC471550
0.8974 High Similarity NPC76972
0.8974 High Similarity NPC475140
0.8974 High Similarity NPC71065
0.8974 High Similarity NPC293330
0.8974 High Similarity NPC471385
0.8974 High Similarity NPC119592
0.8974 High Similarity NPC250247
0.8974 High Similarity NPC57484
0.8974 High Similarity NPC54636
0.8974 High Similarity NPC202828
0.8974 High Similarity NPC67857
0.8974 High Similarity NPC70809
0.8974 High Similarity NPC41061
0.8974 High Similarity NPC305981
0.8974 High Similarity NPC469782
0.8974 High Similarity NPC261506
0.8968 High Similarity NPC476777
0.8968 High Similarity NPC476778
0.896 High Similarity NPC277212
0.896 High Similarity NPC71391
0.896 High Similarity NPC46823
0.896 High Similarity NPC178264
0.896 High Similarity NPC30279
0.896 High Similarity NPC473918
0.896 High Similarity NPC192765
0.8952 High Similarity NPC244296
0.8952 High Similarity NPC305793
0.8952 High Similarity NPC252657
0.8952 High Similarity NPC280029
0.8952 High Similarity NPC472267
0.8952 High Similarity NPC477196
0.8952 High Similarity NPC1314
0.8952 High Similarity NPC82380
0.8952 High Similarity NPC88311
0.8952 High Similarity NPC273878
0.8952 High Similarity NPC9470
0.8952 High Similarity NPC252289
0.8952 High Similarity NPC269484
0.8952 High Similarity NPC107536
0.8952 High Similarity NPC141600
0.8952 High Similarity NPC97918
0.8952 High Similarity NPC11577
0.8952 High Similarity NPC115656
0.8952 High Similarity NPC470518
0.8917 High Similarity NPC267694
0.8917 High Similarity NPC142151
0.8917 High Similarity NPC110385
0.8917 High Similarity NPC144644
0.8917 High Similarity NPC37860
0.8917 High Similarity NPC153673
0.8908 High Similarity NPC36831
0.8908 High Similarity NPC473459
0.8898 High Similarity NPC37134
0.8898 High Similarity NPC291903
0.8889 High Similarity NPC155410
0.8889 High Similarity NPC174720
0.8889 High Similarity NPC192600
0.8889 High Similarity NPC295823
0.8889 High Similarity NPC251263
0.8889 High Similarity NPC114304
0.8889 High Similarity NPC323341
0.8889 High Similarity NPC114287
0.8889 High Similarity NPC166422
0.8889 High Similarity NPC241909
0.8889 High Similarity NPC46665
0.8889 High Similarity NPC475287
0.8889 High Similarity NPC475467
0.8889 High Similarity NPC309714
0.8889 High Similarity NPC219180
0.8889 High Similarity NPC151543
0.8889 High Similarity NPC133818
0.8889 High Similarity NPC473826
0.888 High Similarity NPC477197
0.8871 High Similarity NPC477194
0.8871 High Similarity NPC477191
0.8871 High Similarity NPC477192
0.8871 High Similarity NPC477193
0.8843 High Similarity NPC476204
0.8843 High Similarity NPC170084
0.8833 High Similarity NPC477464
0.8833 High Similarity NPC207738
0.8824 High Similarity NPC110633
0.8824 High Similarity NPC323359
0.8824 High Similarity NPC185466
0.8824 High Similarity NPC148417
0.8824 High Similarity NPC474483
0.8824 High Similarity NPC136768
0.8824 High Similarity NPC300419
0.8824 High Similarity NPC68175
0.881 High Similarity NPC478154
0.881 High Similarity NPC477195
0.8803 High Similarity NPC109079
0.8803 High Similarity NPC10320
0.8803 High Similarity NPC324875
0.8803 High Similarity NPC1046
0.8803 High Similarity NPC276093
0.8803 High Similarity NPC475516
0.8803 High Similarity NPC80843
0.8803 High Similarity NPC104400

  Chemically structural similarity: II. Similar Clinical/Approved Drugs

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules.

●  The left chart: Distribution of similarity level between NPC472270 and all drugs/candidates.
●  The right table: Most similar clinical/approved drugs (Tc>=0.56 or Top200).

Similarity Score Similarity Level Drug ID Developmental Stage
0.8548 High Similarity NPD8328 Phase 3
0.8264 Intermediate Similarity NPD8133 Approved
0.824 Intermediate Similarity NPD8516 Approved
0.824 Intermediate Similarity NPD8515 Approved
0.824 Intermediate Similarity NPD8517 Approved
0.816 Intermediate Similarity NPD8377 Approved
0.816 Intermediate Similarity NPD8294 Approved
0.8151 Intermediate Similarity NPD6686 Approved
0.8095 Intermediate Similarity NPD8296 Approved
0.8095 Intermediate Similarity NPD8335 Approved
0.8095 Intermediate Similarity NPD8378 Approved
0.8095 Intermediate Similarity NPD8380 Approved
0.8095 Intermediate Similarity NPD8379 Approved
0.8095 Intermediate Similarity NPD8513 Phase 3
0.8077 Intermediate Similarity NPD7319 Approved
0.8065 Intermediate Similarity NPD8295 Clinical (unspecified phase)
0.7984 Intermediate Similarity NPD7507 Approved
0.7953 Intermediate Similarity NPD8033 Approved
0.7812 Intermediate Similarity NPD7503 Approved
0.7787 Intermediate Similarity NPD8132 Clinical (unspecified phase)
0.7727 Intermediate Similarity NPD7736 Approved
0.7717 Intermediate Similarity NPD7327 Approved
0.7717 Intermediate Similarity NPD7328 Approved
0.7661 Intermediate Similarity NPD8413 Clinical (unspecified phase)
0.7656 Intermediate Similarity NPD7516 Approved
0.7638 Intermediate Similarity NPD7115 Discovery
0.748 Intermediate Similarity NPD6412 Phase 2
0.7348 Intermediate Similarity NPD6370 Approved
0.7288 Intermediate Similarity NPD7748 Approved
0.7273 Intermediate Similarity NPD7639 Approved
0.7273 Intermediate Similarity NPD7640 Approved
0.7259 Intermediate Similarity NPD8293 Discontinued
0.725 Intermediate Similarity NPD7902 Approved
0.7239 Intermediate Similarity NPD7492 Approved
0.7222 Intermediate Similarity NPD4061 Clinical (unspecified phase)
0.7197 Intermediate Similarity NPD6054 Approved
0.7197 Intermediate Similarity NPD6319 Approved
0.719 Intermediate Similarity NPD7638 Approved
0.719 Intermediate Similarity NPD4225 Approved
0.7185 Intermediate Similarity NPD6616 Approved
0.7143 Intermediate Similarity NPD5345 Clinical (unspecified phase)
0.7132 Intermediate Similarity NPD8074 Phase 3
0.7132 Intermediate Similarity NPD7078 Approved
0.7119 Intermediate Similarity NPD7515 Phase 2
0.7054 Intermediate Similarity NPD6882 Approved
0.7054 Intermediate Similarity NPD8297 Approved
0.7049 Intermediate Similarity NPD8029 Clinical (unspecified phase)
0.7031 Intermediate Similarity NPD5955 Clinical (unspecified phase)
0.7015 Intermediate Similarity NPD6016 Approved
0.7015 Intermediate Similarity NPD6015 Approved
0.7 Intermediate Similarity NPD7901 Clinical (unspecified phase)
0.7 Intermediate Similarity NPD7900 Approved
0.697 Remote Similarity NPD6009 Approved
0.6963 Remote Similarity NPD5988 Approved
0.694 Remote Similarity NPD6059 Approved
0.687 Remote Similarity NPD4632 Approved
0.68 Remote Similarity NPD5344 Discontinued
0.6797 Remote Similarity NPD5954 Clinical (unspecified phase)
0.675 Remote Similarity NPD46 Approved
0.675 Remote Similarity NPD6698 Approved
0.6746 Remote Similarity NPD7632 Discontinued
0.6744 Remote Similarity NPD6899 Approved
0.6744 Remote Similarity NPD6881 Approved
0.6718 Remote Similarity NPD6650 Approved
0.6718 Remote Similarity NPD8130 Phase 1
0.6718 Remote Similarity NPD6649 Approved
0.6667 Remote Similarity NPD5697 Approved
0.6667 Remote Similarity NPD7830 Approved
0.6667 Remote Similarity NPD7829 Approved
0.6642 Remote Similarity NPD6921 Approved
0.6641 Remote Similarity NPD8170 Clinical (unspecified phase)
0.6641 Remote Similarity NPD7102 Approved
0.6641 Remote Similarity NPD6883 Approved
0.6641 Remote Similarity NPD7290 Approved
0.6641 Remote Similarity NPD6371 Approved
0.6641 Remote Similarity NPD4634 Approved
0.6591 Remote Similarity NPD6847 Approved
0.6591 Remote Similarity NPD6869 Approved
0.6591 Remote Similarity NPD6617 Approved
0.6589 Remote Similarity NPD6675 Approved
0.6589 Remote Similarity NPD7128 Approved
0.6589 Remote Similarity NPD6402 Approved
0.6589 Remote Similarity NPD5739 Approved
0.6565 Remote Similarity NPD6012 Approved
0.6565 Remote Similarity NPD6014 Approved
0.6565 Remote Similarity NPD6373 Approved
0.6565 Remote Similarity NPD6013 Approved
0.6565 Remote Similarity NPD6372 Approved
0.6557 Remote Similarity NPD7983 Approved
0.6547 Remote Similarity NPD7604 Phase 2
0.6547 Remote Similarity NPD6067 Discontinued
0.6538 Remote Similarity NPD7899 Clinical (unspecified phase)
0.6525 Remote Similarity NPD8448 Approved
0.6522 Remote Similarity NPD5983 Phase 2
0.6513 Remote Similarity NPD7625 Phase 1
0.6504 Remote Similarity NPD5779 Approved
0.6504 Remote Similarity NPD5778 Approved
0.6503 Remote Similarity NPD8390 Approved
0.6503 Remote Similarity NPD8392 Approved
0.6503 Remote Similarity NPD8391 Approved
0.65 Remote Similarity NPD3573 Approved
0.6489 Remote Similarity NPD6011 Approved
0.6489 Remote Similarity NPD7320 Approved
0.6484 Remote Similarity NPD5211 Phase 2
0.6479 Remote Similarity NPD6033 Approved
0.6475 Remote Similarity NPD7838 Discovery
0.6457 Remote Similarity NPD6648 Approved
0.6454 Remote Similarity NPD8451 Approved
0.6454 Remote Similarity NPD6336 Discontinued
0.6423 Remote Similarity NPD8035 Phase 2
0.6423 Remote Similarity NPD6411 Approved
0.6423 Remote Similarity NPD8034 Phase 2
0.6412 Remote Similarity NPD5701 Approved
0.6407 Remote Similarity NPD7799 Discontinued
0.6385 Remote Similarity NPD5141 Approved
0.6383 Remote Similarity NPD8340 Approved
0.6383 Remote Similarity NPD8342 Approved
0.6383 Remote Similarity NPD8341 Approved
0.6383 Remote Similarity NPD8299 Approved
0.6351 Remote Similarity NPD7966 Clinical (unspecified phase)
0.6328 Remote Similarity NPD4696 Approved
0.6328 Remote Similarity NPD5285 Approved
0.6328 Remote Similarity NPD5286 Approved
0.6312 Remote Similarity NPD7642 Approved
0.6299 Remote Similarity NPD6083 Phase 2
0.6299 Remote Similarity NPD6084 Phase 2
0.6296 Remote Similarity NPD6053 Discontinued
0.629 Remote Similarity NPD6079 Approved
0.6286 Remote Similarity NPD8444 Approved
0.6279 Remote Similarity NPD8312 Approved
0.6279 Remote Similarity NPD8313 Approved
0.6276 Remote Similarity NPD5956 Approved
0.6272 Remote Similarity NPD8470 Clinical (unspecified phase)
0.626 Remote Similarity NPD5764 Clinical (unspecified phase)
0.626 Remote Similarity NPD6101 Approved
0.6259 Remote Similarity NPD7101 Approved
0.6259 Remote Similarity NPD7100 Approved
0.625 Remote Similarity NPD8337 Approved
0.625 Remote Similarity NPD8336 Approved
0.624 Remote Similarity NPD6399 Phase 3
0.624 Remote Similarity NPD8171 Discontinued
0.6239 Remote Similarity NPD7645 Phase 2
0.6233 Remote Similarity NPD7260 Phase 2
0.6231 Remote Similarity NPD5224 Approved
0.6231 Remote Similarity NPD5226 Approved
0.6231 Remote Similarity NPD5225 Approved
0.6231 Remote Similarity NPD4633 Approved
0.6222 Remote Similarity NPD6401 Clinical (unspecified phase)
0.622 Remote Similarity NPD7839 Suspended
0.6218 Remote Similarity NPD4752 Clinical (unspecified phase)
0.6212 Remote Similarity NPD6008 Approved
0.6198 Remote Similarity NPD7520 Clinical (unspecified phase)
0.6198 Remote Similarity NPD1694 Approved
0.619 Remote Similarity NPD8338 Approved
0.6187 Remote Similarity NPD6335 Approved
0.6183 Remote Similarity NPD5175 Approved
0.6183 Remote Similarity NPD5174 Approved
0.6179 Remote Similarity NPD7513 Clinical (unspecified phase)
0.6174 Remote Similarity NPD8387 Clinical (unspecified phase)
0.6172 Remote Similarity NPD4755 Approved
0.616 Remote Similarity NPD7637 Suspended
0.6159 Remote Similarity NPD6274 Approved
0.6154 Remote Similarity NPD5223 Approved
0.6149 Remote Similarity NPD8450 Suspended
0.6148 Remote Similarity NPD3618 Phase 1
0.6129 Remote Similarity NPD5328 Approved
0.6119 Remote Similarity NPD4730 Approved
0.6119 Remote Similarity NPD4729 Approved
0.6116 Remote Similarity NPD6400 Clinical (unspecified phase)
0.6115 Remote Similarity NPD6317 Approved
0.6111 Remote Similarity NPD4202 Approved
0.6107 Remote Similarity NPD8415 Approved
0.6094 Remote Similarity NPD5222 Approved
0.6094 Remote Similarity NPD5221 Approved
0.6094 Remote Similarity NPD5220 Clinical (unspecified phase)
0.6081 Remote Similarity NPD8449 Approved
0.608 Remote Similarity NPD5785 Approved
0.6077 Remote Similarity NPD4700 Approved
0.6071 Remote Similarity NPD6313 Approved
0.6071 Remote Similarity NPD6314 Approved
0.6069 Remote Similarity NPD8368 Discontinued
0.6054 Remote Similarity NPD6914 Discontinued
0.6047 Remote Similarity NPD5173 Approved
0.6043 Remote Similarity NPD6868 Approved
0.6037 Remote Similarity NPD8455 Phase 2
0.6034 Remote Similarity NPD7879 Clinical (unspecified phase)
0.6029 Remote Similarity NPD5249 Phase 3
0.6029 Remote Similarity NPD5251 Approved
0.6029 Remote Similarity NPD5247 Approved
0.6029 Remote Similarity NPD5248 Approved
0.6029 Remote Similarity NPD5250 Approved
0.6016 Remote Similarity NPD6409 Approved
0.6016 Remote Similarity NPD5695 Phase 3
0.6016 Remote Similarity NPD7334 Approved
0.6016 Remote Similarity NPD7521 Approved
0.6016 Remote Similarity NPD3574 Clinical (unspecified phase)
0.6016 Remote Similarity NPD6684 Approved
0.6016 Remote Similarity NPD7146 Approved
0.6016 Remote Similarity NPD1698 Clinical (unspecified phase)
0.6016 Remote Similarity NPD5330 Approved

  Bioactivity similarity: Similar Natural Products in NPASS

Bioactivity similarity was calculated based on bioactivity descriptors of compounds. The bioactivity descriptors were calculated by a recently developed AI algorithm Chemical Checker (CC) [Nature Biotechnology, 38:1087–1096, 2020; Nature Communications, 12:3932, 2021], which evaluated bioactivity similarities at five levels:
A: chemistry similarity;
B: biological targets similarity;
C: networks similarity;
D: cell-based bioactivity similarity;
E: similarity based on clinical data.

Those 5 categories of CC bioactivity descriptors were calculated and then subjected to manifold projection using UMAP algorithm, to project all NPs on a 2-Dimensional space. The current NP was highlighted with a small circle in the 2-D map. Below figures: left-to-right, A-to-E.

A: chemistry similarity
B: biological targets similarity
C: networks similarity
D: cell-based bioactivity similarity
E: similarity based on clinical data