Structure

Physi-Chem Properties

Molecular Weight:  1831.8
Volume:  1723.889
LogP:  0.99
LogD:  0.688
LogS:  -2.526
# Rotatable Bonds:  29
TPSA:  630.82
# H-Bond Aceptor:  42
# H-Bond Donor:  20
# Rings:  14
# Heavy Atoms:  42

MedChem Properties

QED Drug-Likeness Score:  0.014
Synthetic Accessibility Score:  8.118
Fsp3:  0.837
Lipinski Rule-of-5:  Rejected
Pfizer Rule:  Accepted
GSK Rule:  Rejected
BMS Rule:  1
Golden Triangle Rule:  Rejected
Chelating Alert:  0
PAINS Alert:  0

ADMET Properties (ADMETlab2.0)

ADMET: Absorption

Caco-2 Permeability:  -6.108
MDCK Permeability:  0.0004000350018031895
Pgp-inhibitor:  0.002
Pgp-substrate:  1.0
Human Intestinal Absorption (HIA):  1.0
20% Bioavailability (F20%):  0.01
30% Bioavailability (F30%):  1.0

ADMET: Distribution

Blood-Brain-Barrier Penetration (BBB):  0.213
Plasma Protein Binding (PPB):  50.226837158203125%
Volume Distribution (VD):  -0.515
Pgp-substrate:  22.367639541625977%

ADMET: Metabolism

CYP1A2-inhibitor:  0.0
CYP1A2-substrate:  0.004
CYP2C19-inhibitor:  0.0
CYP2C19-substrate:  0.042
CYP2C9-inhibitor:  0.0
CYP2C9-substrate:  0.0
CYP2D6-inhibitor:  0.006
CYP2D6-substrate:  0.016
CYP3A4-inhibitor:  0.068
CYP3A4-substrate:  0.001

ADMET: Excretion

Clearance (CL):  -1.847
Half-life (T1/2):  0.698

ADMET: Toxicity

hERG Blockers:  0.105
Human Hepatotoxicity (H-HT):  0.139
Drug-inuced Liver Injury (DILI):  0.778
AMES Toxicity:  0.06
Rat Oral Acute Toxicity:  0.019
Maximum Recommended Daily Dose:  0.912
Skin Sensitization:  0.206
Carcinogencity:  0.008
Eye Corrosion:  0.003
Eye Irritation:  0.004
Respiratory Toxicity:  0.021

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General Info & Identifiers & Properties  
Structure MOL file  
Source Organisms  
Biological Activities  
Similar NPs/Drugs  

  Natural Product: NPC476113

Natural Product ID:  NPC476113
Common Name*:   3Beta-O-{Beta-D-Xylopyranosyl-(1->3)-Alpha-L-Arabinopyranosyl-(1->6)-[Beta-Dglucopyranosyl-(1->4)]-2-(Acetamido)-2-Deoxy-Beta-D-Glucopyranosyl}-Echinocystic Acid 28-O-Beta-D-Apiofuranosyl-(1->3)-Beta-D-Xylopyranosyl-(1->2)-[(2-O-Cinnamoyl)-Beta-D-Xylopyranosyl-(1->4)]-(6-O-Acetyl)-Beta-D-Glucopyranosyl Ester
IUPAC Name:   [(2S,3R,4S,5R,6R)-6-(acetyloxymethyl)-3-[(2S,3R,4S,5R)-4-[(2S,3R,4R)-3,4-dihydroxy-4-(hydroxymethyl)oxolan-2-yl]oxy-3,5-dihydroxyoxan-2-yl]oxy-4-[(2S,3R,4S,5R)-4,5-dihydroxy-3-[(E)-3-phenylprop-2-enoyl]oxyoxan-2-yl]oxy-5-hydroxyoxan-2-yl] (4aR,5R,6aR,6aS,6bR,8aR,10S,12aR,14bS)-10-[(2R,3R,4R,5S,6R)-3-acetamido-6-[[(2S,3R,4S,5S)-3,5-dihydroxy-4-[(2S,3R,4S,5R)-3,4,5-trihydroxyoxan-2-yl]oxyoxan-2-yl]oxymethyl]-4-hydroxy-5-[(2S,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxyoxan-2-yl]oxy-5-hydroxy-2,2,6a,6b,9,9,12a-heptamethyl-1,3,4,5,6,6a,7,8,8a,10,11,12,13,14b-tetradecahydropicene-4a-carboxylate
Synonyms:  
Standard InCHIKey:  NXOJPRIMQZRNEZ-VHBDHRCWSA-N
Standard InCHI:  InChI=1S/C86H129NO41/c1-36(90)87-53-58(102)66(125-75-61(105)59(103)56(100)45(27-88)118-75)47(33-116-72-62(106)64(43(94)30-112-72)123-73-60(104)54(98)41(92)28-113-73)120-71(53)121-51-20-21-82(7)48(81(51,5)6)19-22-83(8)49(82)17-16-39-40-25-80(3,4)23-24-86(40,50(96)26-84(39,83)9)79(109)128-77-69(127-74-63(107)65(44(95)31-114-74)124-78-70(108)85(110,34-89)35-117-78)67(57(101)46(119-77)32-111-37(2)91)126-76-68(55(99)42(93)29-115-76)122-52(97)18-15-38-13-11-10-12-14-38/h10-16,18,40-51,53-78,88-89,92-96,98-108,110H,17,19-35H2,1-9H3,(H,87,90)/b18-15+/t40-,41+,42+,43-,44+,45+,46+,47+,48-,49+,50+,51-,53+,54-,55-,56+,57+,58+,59-,60+,61+,62+,63+,64-,65-,66+,67-,68+,69+,70-,71-,72-,73-,74-,75-,76-,77-,78-,82-,83+,84+,85+,86+/m0/s1
SMILES:  OC[C@H]1O[C@@H](O[C@@H]2[C@@H](CO[C@@H]3OC[C@@H]([C@@H]([C@H]3O)O[C@@H]3OC[C@H]([C@@H]([C@H]3O)O)O)O)O[C@H]([C@@H]([C@H]2O)N=C(O)C)O[C@H]2CC[C@]3([C@H](C2(C)C)CC[C@@]2([C@@H]3CC=C3[C@@]2(C)C[C@H]([C@@]2([C@H]3CC(C)(C)CC2)C(=O)O[C@@H]2O[C@H](COC(=O)C)[C@H]([C@@H]([C@H]2O[C@@H]2OC[C@H]([C@@H]([C@H]2O)O[C@@H]2OC[C@]([C@H]2O)(O)CO)O)O[C@@H]2OC[C@H]([C@@H]([C@H]2OC(=O)/C=C/c2ccccc2)O)O)O)O)C)C)[C@@H]([C@H]([C@@H]1O)O)O
Synthetic Gene Cluster:   n.a.
ChEMBL Identifier:   CHEMBL527074
PubChem CID:   44566572
Chemical Classification**:  
  • CHEMONTID:0000000 [Organic compounds]
    • [CHEMONTID:0000012] Lipids and lipid-like molecules
      • [CHEMONTID:0000259] Prenol lipids
        • [CHEMONTID:0002049] Terpene glycosides
          • [CHEMONTID:0001580] Triterpene glycosides
            • [CHEMONTID:0002358] Triterpene saponins

*Note: the InCHIKey will be temporarily assigned as the "Common Name" if no IUPAC name or alternative short name is available.
**Note: the Chemical Classification was calculated by NPClassifier Version 1.5. Reference: PMID:34662515.

  Species Source

Organism ID Organism Name Taxonomy Level Family SuperKingdom Isolation Part Collection Location Collection Time Reference
NPO11507 Entada africana Species Fabaceae Eukaryota n.a. n.a. n.a. PMID[16989528]
NPO11507 Entada africana Species Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]

☑ Note for Reference:
In addition to directly collecting NP source organism data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated them from below databases:
UNPD: Universal Natural Products Database [PMID: 23638153].
StreptomeDB: a database of streptomycetes natural products [PMID: 33051671].
TM-MC: a database of medicinal materials and chemical compounds in Northeast Asian traditional medicine [PMID: 26156871].
TCM@Taiwan: a Traditional Chinese Medicine database [PMID: 21253603].
TCMID: a Traditional Chinese Medicine database [PMID: 29106634].
TCMSP: The traditional Chinese medicine systems pharmacology database and analysis platform [PMID: 24735618].
HerDing: a herb recommendation system to treat diseases using genes and chemicals [PMID: 26980517].
MetaboLights: a metabolomics database [PMID: 27010336].
FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].

  NP Quantity Composition/Concentration

Organism ID NP ID Organism Material Preparation Organism Part NP Quantity (Standard) NP Quantity (Minimum) NP Quantity (Maximum) Quantity Unit Reference

☑ Note for Reference:
In addition to directly collecting NP quantitative data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated NP quantitative records for specific NP domains (e.g., NPS from foods or herbs) from domain-specific databases. These databases include:
DUKE: Dr. Duke's Phytochemical and Ethnobotanical Databases.
PHENOL EXPLORER: is the first comprehensive database on polyphenol content in foods [PMID: 24103452], its homepage can be accessed at here.
FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].

  Biological Activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference
NPT71 Cell Line HEK293 Homo sapiens IC50 = 560.0 nM PMID[531573]
NPT1182 Cell Line J774.A1 Mus musculus IC50 = 980.0 nM PMID[531573]
NPT3470 Cell Line WEHI-164 Mus musculus IC50 = 940.0 nM PMID[531573]

☑ Note for Activity Records:
☉ The quantitative biological activities were primarily integrated from ChEMBL (Version-30) database and were also directly collected from PubMed literature. PubMed PMID was provided as the reference link for each activity record.

  Chemically structural similarity: I. Similar Active Natural Products in NPASS

Top-200 similar NPs were calculated against the active-NP-set (includes 4,3285 NPs with experimentally-derived bioactivity available in NPASS)

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules. Tc lies between [0, 1] where '1' indicates the highest similarity. What is Tanimoto coefficient

●  The left chart: Distribution of similarity level between NPC476113 and all remaining natural products in the NPASS database.
●  The right table: Most similar natural products (Tc>=0.56 or Top200).

Similarity Score Similarity Level Natural Product ID
0.9753 High Similarity NPC475345
0.9693 High Similarity NPC475649
0.9444 High Similarity NPC120667
0.9444 High Similarity NPC278272
0.8625 High Similarity NPC265699
0.8625 High Similarity NPC475527
0.8571 High Similarity NPC100612
0.8571 High Similarity NPC174336
0.8571 High Similarity NPC187497
0.8571 High Similarity NPC475599
0.8571 High Similarity NPC113620
0.821 Intermediate Similarity NPC264270
0.821 Intermediate Similarity NPC40085
0.8176 Intermediate Similarity NPC475584
0.8176 Intermediate Similarity NPC475394
0.8176 Intermediate Similarity NPC475152
0.8148 Intermediate Similarity NPC111466
0.8125 Intermediate Similarity NPC475892
0.8107 Intermediate Similarity NPC477467
0.8047 Intermediate Similarity NPC477474
0.8047 Intermediate Similarity NPC477472
0.8047 Intermediate Similarity NPC477470
0.7937 Intermediate Similarity NPC210729
0.7937 Intermediate Similarity NPC82931
0.7937 Intermediate Similarity NPC172365
0.7914 Intermediate Similarity NPC475513
0.7914 Intermediate Similarity NPC473755
0.787 Intermediate Similarity NPC69425
0.7812 Intermediate Similarity NPC243680
0.7812 Intermediate Similarity NPC200788
0.7778 Intermediate Similarity NPC472375
0.7758 Intermediate Similarity NPC61717
0.7758 Intermediate Similarity NPC244380
0.7751 Intermediate Similarity NPC329657
0.7736 Intermediate Similarity NPC75318
0.7736 Intermediate Similarity NPC235772
0.7736 Intermediate Similarity NPC280941
0.7697 Intermediate Similarity NPC477466
0.7697 Intermediate Similarity NPC477469
0.7697 Intermediate Similarity NPC477471
0.7697 Intermediate Similarity NPC477473
0.7688 Intermediate Similarity NPC145899
0.7684 Intermediate Similarity NPC472392
0.7683 Intermediate Similarity NPC193579
0.7683 Intermediate Similarity NPC298469
0.7673 Intermediate Similarity NPC76999
0.7656 Intermediate Similarity NPC289383
0.7644 Intermediate Similarity NPC472391
0.7636 Intermediate Similarity NPC214821
0.7636 Intermediate Similarity NPC298067
0.7617 Intermediate Similarity NPC116862
0.7614 Intermediate Similarity NPC150893
0.7614 Intermediate Similarity NPC475505
0.7614 Intermediate Similarity NPC475437
0.7614 Intermediate Similarity NPC475464
0.7614 Intermediate Similarity NPC295408
0.7614 Intermediate Similarity NPC329960
0.7614 Intermediate Similarity NPC473641
0.7614 Intermediate Similarity NPC473797
0.7614 Intermediate Similarity NPC475300
0.761 Intermediate Similarity NPC73829
0.761 Intermediate Similarity NPC119794
0.7588 Intermediate Similarity NPC70236
0.7588 Intermediate Similarity NPC475218
0.7588 Intermediate Similarity NPC476092
0.7588 Intermediate Similarity NPC475447
0.7586 Intermediate Similarity NPC476784
0.7584 Intermediate Similarity NPC475198
0.7584 Intermediate Similarity NPC475531
0.7584 Intermediate Similarity NPC475175
0.7576 Intermediate Similarity NPC141669
0.7561 Intermediate Similarity NPC162910
0.756 Intermediate Similarity NPC298005
0.756 Intermediate Similarity NPC36463
0.7557 Intermediate Similarity NPC475536
0.7557 Intermediate Similarity NPC165234
0.7547 Intermediate Similarity NPC475472
0.7546 Intermediate Similarity NPC302276
0.7529 Intermediate Similarity NPC474564
0.7528 Intermediate Similarity NPC473468
0.7528 Intermediate Similarity NPC473557
0.7528 Intermediate Similarity NPC475567
0.7527 Intermediate Similarity NPC13989
0.75 Intermediate Similarity NPC31171
0.75 Intermediate Similarity NPC237240
0.7484 Intermediate Similarity NPC147032
0.7444 Intermediate Similarity NPC469420
0.7444 Intermediate Similarity NPC102465
0.7443 Intermediate Similarity NPC477623
0.7439 Intermediate Similarity NPC180770
0.7439 Intermediate Similarity NPC265908
0.7394 Intermediate Similarity NPC471623
0.7391 Intermediate Similarity NPC471024
0.7384 Intermediate Similarity NPC472761
0.7384 Intermediate Similarity NPC469448
0.7375 Intermediate Similarity NPC290276
0.7375 Intermediate Similarity NPC10883
0.7375 Intermediate Similarity NPC222951
0.7375 Intermediate Similarity NPC198918
0.7375 Intermediate Similarity NPC43589
0.7375 Intermediate Similarity NPC35338
0.7375 Intermediate Similarity NPC204214
0.7375 Intermediate Similarity NPC10121
0.7375 Intermediate Similarity NPC124878
0.7375 Intermediate Similarity NPC311178
0.7375 Intermediate Similarity NPC300655
0.7375 Intermediate Similarity NPC231888
0.7375 Intermediate Similarity NPC63404
0.7375 Intermediate Similarity NPC92283
0.7368 Intermediate Similarity NPC201692
0.7365 Intermediate Similarity NPC111586
0.7365 Intermediate Similarity NPC108852
0.7365 Intermediate Similarity NPC261709
0.7356 Intermediate Similarity NPC472658
0.7356 Intermediate Similarity NPC472657
0.7354 Intermediate Similarity NPC206211
0.7354 Intermediate Similarity NPC324251
0.7354 Intermediate Similarity NPC473400
0.7354 Intermediate Similarity NPC317882
0.7354 Intermediate Similarity NPC306001
0.7354 Intermediate Similarity NPC275170
0.7354 Intermediate Similarity NPC471629
0.7354 Intermediate Similarity NPC471754
0.7353 Intermediate Similarity NPC173934
0.734 Intermediate Similarity NPC327699
0.733 Intermediate Similarity NPC469417
0.7329 Intermediate Similarity NPC233223
0.7329 Intermediate Similarity NPC324933
0.7329 Intermediate Similarity NPC319719
0.7329 Intermediate Similarity NPC475177
0.7329 Intermediate Similarity NPC322904
0.7329 Intermediate Similarity NPC196874
0.7329 Intermediate Similarity NPC471025
0.7329 Intermediate Similarity NPC183816
0.7329 Intermediate Similarity NPC473679
0.7329 Intermediate Similarity NPC475444
0.7314 Intermediate Similarity NPC5115
0.7314 Intermediate Similarity NPC469398
0.7312 Intermediate Similarity NPC77651
0.7312 Intermediate Similarity NPC28069
0.7308 Intermediate Similarity NPC477488
0.7306 Intermediate Similarity NPC473490
0.7306 Intermediate Similarity NPC473558
0.7299 Intermediate Similarity NPC477905
0.7299 Intermediate Similarity NPC472548
0.7292 Intermediate Similarity NPC215892
0.7292 Intermediate Similarity NPC242662
0.7292 Intermediate Similarity NPC321072
0.7292 Intermediate Similarity NPC191193
0.7288 Intermediate Similarity NPC477736
0.7288 Intermediate Similarity NPC469399
0.7283 Intermediate Similarity NPC475561
0.7283 Intermediate Similarity NPC469421
0.7283 Intermediate Similarity NPC475417
0.7263 Intermediate Similarity NPC473300
0.7263 Intermediate Similarity NPC453583
0.7263 Intermediate Similarity NPC475336
0.7254 Intermediate Similarity NPC471606
0.7254 Intermediate Similarity NPC181964
0.7254 Intermediate Similarity NPC208553
0.725 Intermediate Similarity NPC220838
0.725 Intermediate Similarity NPC472270
0.725 Intermediate Similarity NPC162925
0.725 Intermediate Similarity NPC472269
0.725 Intermediate Similarity NPC87153
0.725 Intermediate Similarity NPC45606
0.725 Intermediate Similarity NPC23020
0.725 Intermediate Similarity NPC472268
0.725 Intermediate Similarity NPC112492
0.7239 Intermediate Similarity NPC477072
0.7232 Intermediate Similarity NPC477735
0.7225 Intermediate Similarity NPC108276
0.7225 Intermediate Similarity NPC33372
0.7225 Intermediate Similarity NPC163578
0.7225 Intermediate Similarity NPC470274
0.7225 Intermediate Similarity NPC67246
0.7222 Intermediate Similarity NPC230331
0.7216 Intermediate Similarity NPC472549
0.7216 Intermediate Similarity NPC469422
0.7216 Intermediate Similarity NPC34066
0.7209 Intermediate Similarity NPC94602
0.7204 Intermediate Similarity NPC124828
0.7188 Intermediate Similarity NPC172769
0.7188 Intermediate Similarity NPC124690
0.7188 Intermediate Similarity NPC184195
0.7188 Intermediate Similarity NPC205
0.7188 Intermediate Similarity NPC166521
0.7188 Intermediate Similarity NPC281470
0.7173 Intermediate Similarity NPC40539
0.7172 Intermediate Similarity NPC314941
0.716 Intermediate Similarity NPC190849
0.716 Intermediate Similarity NPC171007
0.716 Intermediate Similarity NPC284625
0.716 Intermediate Similarity NPC69176
0.7159 Intermediate Similarity NPC469477
0.7159 Intermediate Similarity NPC133430
0.7152 Intermediate Similarity NPC209851
0.7151 Intermediate Similarity NPC200471
0.7151 Intermediate Similarity NPC470157
0.7151 Intermediate Similarity NPC469349

  Chemically structural similarity: II. Similar Clinical/Approved Drugs

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules.

●  The left chart: Distribution of similarity level between NPC476113 and all drugs/candidates.
●  The right table: Most similar clinical/approved drugs (Tc>=0.56 or Top200).

Similarity Score Similarity Level Drug ID Developmental Stage
0.7809 Intermediate Similarity NPD8470 Clinical (unspecified phase)
0.765 Intermediate Similarity NPD8407 Phase 2
0.75 Intermediate Similarity NPD7274 Clinical (unspecified phase)
0.7486 Intermediate Similarity NPD8368 Discontinued
0.7409 Intermediate Similarity NPD8486 Clinical (unspecified phase)
0.7394 Intermediate Similarity NPD8435 Approved
0.7394 Intermediate Similarity NPD8360 Approved
0.7394 Intermediate Similarity NPD8361 Approved
0.7287 Intermediate Similarity NPD8424 Clinical (unspecified phase)
0.7267 Intermediate Similarity NPD8389 Clinical (unspecified phase)
0.7254 Intermediate Similarity NPD8485 Approved
0.7172 Intermediate Similarity NPD8320 Phase 1
0.7172 Intermediate Similarity NPD8319 Approved
0.6989 Remote Similarity NPD7799 Discontinued
0.6919 Remote Similarity NPD7237 Clinical (unspecified phase)
0.6912 Remote Similarity NPD7875 Clinical (unspecified phase)
0.6912 Remote Similarity NPD7874 Approved
0.6905 Remote Similarity NPD7966 Clinical (unspecified phase)
0.6878 Remote Similarity NPD7782 Clinical (unspecified phase)
0.6878 Remote Similarity NPD7801 Approved
0.6878 Remote Similarity NPD7783 Phase 2
0.6875 Remote Similarity NPD8404 Phase 2
0.6869 Remote Similarity NPD7699 Phase 2
0.6869 Remote Similarity NPD7700 Phase 2
0.678 Remote Similarity NPD8151 Discontinued
0.6733 Remote Similarity NPD6823 Phase 2
0.6732 Remote Similarity NPD7701 Phase 2
0.6717 Remote Similarity NPD6535 Approved
0.6717 Remote Similarity NPD6534 Approved
0.67 Remote Similarity NPD7698 Approved
0.67 Remote Similarity NPD7697 Approved
0.67 Remote Similarity NPD7696 Phase 3
0.6685 Remote Similarity NPD8417 Discontinued
0.6683 Remote Similarity NPD8462 Phase 1
0.6585 Remote Similarity NPD7871 Phase 2
0.6585 Remote Similarity NPD7870 Phase 2
0.6554 Remote Similarity NPD2575 Approved
0.6553 Remote Similarity NPD7999 Approved
0.6552 Remote Similarity NPD6780 Approved
0.6552 Remote Similarity NPD6778 Approved
0.6552 Remote Similarity NPD6777 Approved
0.6552 Remote Similarity NPD6779 Approved
0.6552 Remote Similarity NPD6781 Approved
0.6552 Remote Similarity NPD6782 Approved
0.6552 Remote Similarity NPD6776 Approved
0.654 Remote Similarity NPD7930 Approved
0.6537 Remote Similarity NPD7497 Discontinued
0.6528 Remote Similarity NPD5619 Clinical (unspecified phase)
0.6513 Remote Similarity NPD8312 Approved
0.6513 Remote Similarity NPD8313 Approved
0.65 Remote Similarity NPD6214 Clinical (unspecified phase)
0.65 Remote Similarity NPD6212 Phase 3
0.65 Remote Similarity NPD6213 Phase 3
0.6497 Remote Similarity NPD8150 Discontinued
0.6471 Remote Similarity NPD2613 Approved
0.6463 Remote Similarity NPD8517 Approved
0.6463 Remote Similarity NPD8516 Approved
0.6463 Remote Similarity NPD8515 Approved
0.6453 Remote Similarity NPD2572 Clinical (unspecified phase)
0.6453 Remote Similarity NPD3089 Approved
0.6453 Remote Similarity NPD2566 Approved
0.6453 Remote Similarity NPD4746 Phase 3
0.6453 Remote Similarity NPD4745 Approved
0.6453 Remote Similarity NPD2574 Discontinued
0.6453 Remote Similarity NPD3616 Approved
0.6453 Remote Similarity NPD3088 Approved
0.6453 Remote Similarity NPD2571 Approved
0.6453 Remote Similarity NPD3614 Approved
0.6453 Remote Similarity NPD2573 Approved
0.6453 Remote Similarity NPD3087 Approved
0.6453 Remote Similarity NPD3090 Approved
0.6453 Remote Similarity NPD3615 Approved
0.6453 Remote Similarity NPD2570 Approved
0.6438 Remote Similarity NPD8058 Clinical (unspecified phase)
0.6438 Remote Similarity NPD8059 Phase 3
0.6435 Remote Similarity NPD8155 Clinical (unspecified phase)
0.6425 Remote Similarity NPD8323 Discontinued
0.6398 Remote Similarity NPD8455 Phase 2
0.6386 Remote Similarity NPD8328 Phase 3
0.6379 Remote Similarity NPD4684 Phase 3
0.6379 Remote Similarity NPD4686 Approved
0.6379 Remote Similarity NPD4685 Phase 3
0.6378 Remote Similarity NPD8658 Clinical (unspecified phase)
0.6378 Remote Similarity NPD7749 Clinical (unspecified phase)
0.6377 Remote Similarity NPD7435 Discontinued
0.6376 Remote Similarity NPD8468 Phase 2
0.6369 Remote Similarity NPD8074 Phase 3
0.6364 Remote Similarity NPD8513 Phase 3
0.6353 Remote Similarity NPD8390 Approved
0.6353 Remote Similarity NPD8392 Approved
0.6353 Remote Similarity NPD8391 Approved
0.6335 Remote Similarity NPD7315 Approved
0.6316 Remote Similarity NPD7211 Clinical (unspecified phase)
0.6307 Remote Similarity NPD6852 Discontinued
0.6304 Remote Similarity NPD7239 Suspended
0.6298 Remote Similarity NPD7236 Approved
0.6292 Remote Similarity NPD7702 Clinical (unspecified phase)
0.6289 Remote Similarity NPD7228 Approved
0.6287 Remote Similarity NPD7879 Clinical (unspecified phase)
0.6281 Remote Similarity NPD5036 Approved
0.6278 Remote Similarity NPD7625 Phase 1
0.6272 Remote Similarity NPD8448 Approved
0.6264 Remote Similarity NPD7715 Approved
0.6264 Remote Similarity NPD7714 Approved
0.625 Remote Similarity NPD5038 Approved
0.625 Remote Similarity NPD5037 Approved
0.6244 Remote Similarity NPD7240 Approved
0.6243 Remote Similarity NPD5952 Clinical (unspecified phase)
0.6235 Remote Similarity NPD8133 Approved
0.6215 Remote Similarity NPD7827 Phase 1
0.6213 Remote Similarity NPD8451 Approved
0.6205 Remote Similarity NPD8377 Approved
0.6205 Remote Similarity NPD8294 Approved
0.6199 Remote Similarity NPD7319 Approved
0.6198 Remote Similarity NPD8127 Discontinued
0.619 Remote Similarity NPD7829 Approved
0.619 Remote Similarity NPD7830 Approved
0.6188 Remote Similarity NPD8166 Discontinued
0.6186 Remote Similarity NPD7997 Clinical (unspecified phase)
0.6184 Remote Similarity NPD7565 Approved
0.6184 Remote Similarity NPD8285 Discontinued
0.6183 Remote Similarity NPD6591 Clinical (unspecified phase)
0.6181 Remote Similarity NPD5035 Approved
0.6169 Remote Similarity NPD8434 Phase 2
0.6168 Remote Similarity NPD5981 Approved
0.6168 Remote Similarity NPD8378 Approved
0.6168 Remote Similarity NPD8335 Approved
0.6168 Remote Similarity NPD8380 Approved
0.6168 Remote Similarity NPD7503 Approved
0.6168 Remote Similarity NPD8296 Approved
0.6168 Remote Similarity NPD8379 Approved
0.6162 Remote Similarity NPD5030 Phase 2
0.6154 Remote Similarity NPD3131 Approved
0.6154 Remote Similarity NPD3132 Approved
0.6154 Remote Similarity NPD2611 Approved
0.6154 Remote Similarity NPD4216 Approved
0.6154 Remote Similarity NPD4215 Approved
0.6154 Remote Similarity NPD2608 Approved
0.6154 Remote Similarity NPD4218 Approved
0.6154 Remote Similarity NPD2610 Approved
0.6154 Remote Similarity NPD4217 Approved
0.6154 Remote Similarity NPD2612 Approved
0.6154 Remote Similarity NPD2609 Approved
0.6149 Remote Similarity NPD4738 Phase 2
0.6136 Remote Similarity NPD5120 Approved
0.6136 Remote Similarity NPD5121 Approved
0.6136 Remote Similarity NPD5119 Approved
0.6135 Remote Similarity NPD4420 Approved
0.6131 Remote Similarity NPD5026 Approved
0.6131 Remote Similarity NPD5028 Approved
0.6131 Remote Similarity NPD4954 Approved
0.6131 Remote Similarity NPD5034 Approved
0.6131 Remote Similarity NPD4955 Approved
0.6131 Remote Similarity NPD36 Approved
0.6127 Remote Similarity NPD7296 Approved
0.6126 Remote Similarity NPD7975 Clinical (unspecified phase)
0.6125 Remote Similarity NPD6686 Approved
0.6124 Remote Similarity NPD2569 Approved
0.6124 Remote Similarity NPD2567 Approved
0.6119 Remote Similarity NPD8055 Clinical (unspecified phase)
0.6118 Remote Similarity NPD7507 Approved
0.6111 Remote Similarity NPD7266 Discontinued
0.6108 Remote Similarity NPD6836 Approved
0.61 Remote Similarity NPD7311 Approved
0.61 Remote Similarity NPD7313 Approved
0.61 Remote Similarity NPD7310 Approved
0.61 Remote Similarity NPD7312 Approved
0.6099 Remote Similarity NPD3400 Discontinued
0.6099 Remote Similarity NPD7488 Clinical (unspecified phase)
0.6095 Remote Similarity NPD5006 Approved
0.6095 Remote Similarity NPD5005 Approved
0.608 Remote Similarity NPD7961 Discontinued
0.6071 Remote Similarity NPD8033 Approved
0.607 Remote Similarity NPD7309 Approved
0.6063 Remote Similarity NPD7907 Approved
0.6059 Remote Similarity NPD6841 Approved
0.6059 Remote Similarity NPD6843 Phase 3
0.6059 Remote Similarity NPD6842 Approved
0.6059 Remote Similarity NPD8299 Approved
0.6059 Remote Similarity NPD8340 Approved
0.6059 Remote Similarity NPD8342 Approved
0.6059 Remote Similarity NPD8341 Approved
0.6053 Remote Similarity NPD7972 Discontinued
0.605 Remote Similarity NPD5032 Approved
0.6047 Remote Similarity NPD7736 Approved
0.6045 Remote Similarity NPD8265 Approved
0.6036 Remote Similarity NPD5125 Phase 3
0.6036 Remote Similarity NPD5126 Approved
0.6034 Remote Similarity NPD7084 Phase 3
0.6032 Remote Similarity NPD6677 Suspended
0.6029 Remote Similarity NPD8397 Clinical (unspecified phase)
0.6024 Remote Similarity NPD8295 Clinical (unspecified phase)
0.6023 Remote Similarity NPD4619 Approved
0.6023 Remote Similarity NPD4621 Approved
0.6019 Remote Similarity NPD5676 Approved
0.6012 Remote Similarity NPD3644 Approved
0.6012 Remote Similarity NPD3643 Approved
0.6012 Remote Similarity NPD3642 Approved
0.6011 Remote Similarity NPD6333 Approved
0.6011 Remote Similarity NPD6334 Approved

  Bioactivity similarity: Similar Natural Products in NPASS

Bioactivity similarity was calculated based on bioactivity descriptors of compounds. The bioactivity descriptors were calculated by a recently developed AI algorithm Chemical Checker (CC) [Nature Biotechnology, 38:1087–1096, 2020; Nature Communications, 12:3932, 2021], which evaluated bioactivity similarities at five levels:
A: chemistry similarity;
B: biological targets similarity;
C: networks similarity;
D: cell-based bioactivity similarity;
E: similarity based on clinical data.

Those 5 categories of CC bioactivity descriptors were calculated and then subjected to manifold projection using UMAP algorithm, to project all NPs on a 2-Dimensional space. The current NP was highlighted with a small circle in the 2-D map. Below figures: left-to-right, A-to-E.

A: chemistry similarity
B: biological targets similarity
C: networks similarity
D: cell-based bioactivity similarity
E: similarity based on clinical data