Structure

Physi-Chem Properties

Molecular Weight:  1997.9
Volume:  1906.52
LogP:  1.923
LogD:  0.903
LogS:  -2.631
# Rotatable Bonds:  36
TPSA:  657.12
# H-Bond Aceptor:  44
# H-Bond Donor:  20
# Rings:  14
# Heavy Atoms:  44

MedChem Properties

QED Drug-Likeness Score:  0.011
Synthetic Accessibility Score:  8.554
Fsp3:  0.802
Lipinski Rule-of-5:  Rejected
Pfizer Rule:  Accepted
GSK Rule:  Rejected
BMS Rule:  1
Golden Triangle Rule:  Rejected
Chelating Alert:  0
PAINS Alert:  0

ADMET Properties (ADMETlab2.0)

ADMET: Absorption

Caco-2 Permeability:  -5.987
MDCK Permeability:  0.0006935641285963356
Pgp-inhibitor:  0.192
Pgp-substrate:  1.0
Human Intestinal Absorption (HIA):  0.999
20% Bioavailability (F20%):  0.001
30% Bioavailability (F30%):  1.0

ADMET: Distribution

Blood-Brain-Barrier Penetration (BBB):  0.246
Plasma Protein Binding (PPB):  52.185150146484375%
Volume Distribution (VD):  -0.492
Pgp-substrate:  19.16727638244629%

ADMET: Metabolism

CYP1A2-inhibitor:  0.0
CYP1A2-substrate:  0.012
CYP2C19-inhibitor:  0.0
CYP2C19-substrate:  0.044
CYP2C9-inhibitor:  0.0
CYP2C9-substrate:  0.0
CYP2D6-inhibitor:  0.006
CYP2D6-substrate:  0.007
CYP3A4-inhibitor:  0.136
CYP3A4-substrate:  0.005

ADMET: Excretion

Clearance (CL):  -1.811
Half-life (T1/2):  0.555

ADMET: Toxicity

hERG Blockers:  0.082
Human Hepatotoxicity (H-HT):  0.229
Drug-inuced Liver Injury (DILI):  0.565
AMES Toxicity:  0.052
Rat Oral Acute Toxicity:  0.011
Maximum Recommended Daily Dose:  0.969
Skin Sensitization:  0.069
Carcinogencity:  0.005
Eye Corrosion:  0.003
Eye Irritation:  0.002
Respiratory Toxicity:  0.076

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General Info & Identifiers & Properties  
Structure MOL file  
Source Organisms  
Biological Activities  
Similar NPs/Drugs  

  Natural Product: NPC475345

Natural Product ID:  NPC475345
Common Name*:   3Beta-O-{Beta-D-Xylopyranosyl-(1->3)-Alpha-L-Arabinopyranosyl-(1->6)-[Beta-D-Glucopyranosyl-(1->4)]-2-(Acetamido)-2-Deoxy-Beta-D-Glucopyranosyl}Echinocystic Acid 28-O-{Beta-D-Apiofuranosyl-(1->3)-Beta-D-Xylopyranosyl-(1->2)-[(2-O-Cynnamoyl), (3-O-(2E,6Alpha)-2,6-Dimethyl-6-Hydroxy-2,7-Octadienoyl)-Beta-D-Xylopyranosyl-(1->4)]-(6-O-Acetyl)-Beta-D-Glucopyranosyl Ester
IUPAC Name:   [(2S,3R,4S,5R,6R)-6-(acetyloxymethyl)-3-[(2S,3R,4S,5R)-4-[(2S,3R,4R)-3,4-dihydroxy-4-(hydroxymethyl)oxolan-2-yl]oxy-3,5-dihydroxyoxan-2-yl]oxy-5-hydroxy-4-[(2S,3R,4S,5R)-5-hydroxy-4-[(2E,6S)-6-hydroxy-2,6-dimethylocta-2,7-dienoyl]oxy-3-[(E)-3-phenylprop-2-enoyl]oxyoxan-2-yl]oxyoxan-2-yl] (4aR,5R,6aR,6aS,6bR,8aR,10S,12aR,14bS)-10-[(2R,3R,4R,5S,6R)-3-acetamido-6-[[(2S,3R,4S,5S)-3,5-dihydroxy-4-[(2S,3R,4S,5R)-3,4,5-trihydroxyoxan-2-yl]oxyoxan-2-yl]oxymethyl]-4-hydroxy-5-[(2S,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxyoxan-2-yl]oxy-5-hydroxy-2,2,6a,6b,9,9,12a-heptamethyl-1,3,4,5,6,6a,7,8,8a,10,11,12,13,14b-tetradecahydropicene-4a-carboxylate
Synonyms:  
Standard InCHIKey:  CRGQIUWGNKROHI-JLEVOCTESA-N
Standard InCHI:  InChI=1S/C96H143NO43/c1-13-91(9,120)27-17-18-43(2)79(118)134-73-52(105)38-126-85(76(73)133-60(107)24-21-46-19-15-14-16-20-46)138-75-64(110)54(39-122-45(4)101)130-86(77(75)139-83-70(116)72(51(104)37-125-83)136-87-78(117)95(121,41-99)42-128-87)140-88(119)96-31-30-89(5,6)32-48(96)47-22-23-57-92(10)28-26-59(90(7,8)56(92)25-29-93(57,11)94(47,12)33-58(96)106)132-80-61(97-44(3)100)65(111)74(137-84-68(114)66(112)63(109)53(34-98)129-84)55(131-80)40-127-81-69(115)71(50(103)36-123-81)135-82-67(113)62(108)49(102)35-124-82/h13-16,18-22,24,48-59,61-78,80-87,98-99,102-106,108-117,120-121H,1,17,23,25-42H2,2-12H3,(H,97,100)/b24-21+,43-18+/t48-,49+,50-,51+,52+,53+,54+,55+,56-,57+,58+,59-,61+,62-,63+,64+,65+,66-,67+,68+,69+,70+,71-,72-,73-,74+,75-,76+,77+,78-,80-,81-,82-,83-,84-,85-,86-,87-,91+,92-,93+,94+,95+,96+/m0/s1
SMILES:  CC(=CCCC(C)(C=C)O)C(=O)OC1C(COC(C1OC(=O)C=CC2=CC=CC=C2)OC3C(C(OC(C3OC4C(C(C(CO4)O)OC5C(C(CO5)(CO)O)O)O)OC(=O)C67CCC(CC6C8=CCC9C1(CCC(C(C1CCC9(C8(CC7O)C)C)(C)C)OC1C(C(C(C(O1)COC1C(C(C(CO1)O)OC1C(C(C(CO1)O)O)O)O)OC1C(C(C(C(O1)CO)O)O)O)O)NC(=O)C)C)(C)C)COC(=O)C)O)O
Synthetic Gene Cluster:   n.a.
ChEMBL Identifier:   CHEMBL503852
PubChem CID:   44566569
Chemical Classification**:  
  • CHEMONTID:0000000 [Organic compounds]
    • [CHEMONTID:0000012] Lipids and lipid-like molecules
      • [CHEMONTID:0000259] Prenol lipids
        • [CHEMONTID:0002049] Terpene glycosides
          • [CHEMONTID:0001580] Triterpene glycosides
            • [CHEMONTID:0002358] Triterpene saponins

*Note: the InCHIKey will be temporarily assigned as the "Common Name" if no IUPAC name or alternative short name is available.
**Note: the Chemical Classification was calculated by NPClassifier Version 1.5. Reference: PMID:34662515.

  Species Source

Organism ID Organism Name Taxonomy Level Family SuperKingdom Isolation Part Collection Location Collection Time Reference
NPO11507 Entada africana Species Fabaceae Eukaryota n.a. n.a. n.a. PMID[16989528]
NPO11507 Entada africana Species Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]

☑ Note for Reference:
In addition to directly collecting NP source organism data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated them from below databases:
UNPD: Universal Natural Products Database [PMID: 23638153].
StreptomeDB: a database of streptomycetes natural products [PMID: 33051671].
TM-MC: a database of medicinal materials and chemical compounds in Northeast Asian traditional medicine [PMID: 26156871].
TCM@Taiwan: a Traditional Chinese Medicine database [PMID: 21253603].
TCMID: a Traditional Chinese Medicine database [PMID: 29106634].
TCMSP: The traditional Chinese medicine systems pharmacology database and analysis platform [PMID: 24735618].
HerDing: a herb recommendation system to treat diseases using genes and chemicals [PMID: 26980517].
MetaboLights: a metabolomics database [PMID: 27010336].
FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].

  NP Quantity Composition/Concentration

Organism ID NP ID Organism Material Preparation Organism Part NP Quantity (Standard) NP Quantity (Minimum) NP Quantity (Maximum) Quantity Unit Reference

☑ Note for Reference:
In addition to directly collecting NP quantitative data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated NP quantitative records for specific NP domains (e.g., NPS from foods or herbs) from domain-specific databases. These databases include:
DUKE: Dr. Duke's Phytochemical and Ethnobotanical Databases.
PHENOL EXPLORER: is the first comprehensive database on polyphenol content in foods [PMID: 24103452], its homepage can be accessed at here.
FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].

  Biological Activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference
NPT71 Cell Line HEK293 Homo sapiens IC50 = 360.0 nM PMID[548226]
NPT1182 Cell Line J774.A1 Mus musculus IC50 = 840.0 nM PMID[548226]
NPT3470 Cell Line WEHI-164 Mus musculus IC50 = 380.0 nM PMID[548226]

☑ Note for Activity Records:
☉ The quantitative biological activities were primarily integrated from ChEMBL (Version-30) database and were also directly collected from PubMed literature. PubMed PMID was provided as the reference link for each activity record.

  Chemically structural similarity: I. Similar Active Natural Products in NPASS

Top-200 similar NPs were calculated against the active-NP-set (includes 4,3285 NPs with experimentally-derived bioactivity available in NPASS)

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules. Tc lies between [0, 1] where '1' indicates the highest similarity. What is Tanimoto coefficient

●  The left chart: Distribution of similarity level between NPC475345 and all remaining natural products in the NPASS database.
●  The right table: Most similar natural products (Tc>=0.56 or Top200).

Similarity Score Similarity Level Natural Product ID
0.9938 High Similarity NPC475649
0.9753 High Similarity NPC476113
0.9568 High Similarity NPC120667
0.9568 High Similarity NPC278272
0.8634 High Similarity NPC475527
0.858 High Similarity NPC475599
0.858 High Similarity NPC174336
0.858 High Similarity NPC100612
0.858 High Similarity NPC187497
0.858 High Similarity NPC113620
0.8519 High Similarity NPC265699
0.8333 Intermediate Similarity NPC40085
0.8333 Intermediate Similarity NPC264270
0.8272 Intermediate Similarity NPC111466
0.8225 Intermediate Similarity NPC477467
0.8166 Intermediate Similarity NPC477470
0.8166 Intermediate Similarity NPC477472
0.8166 Intermediate Similarity NPC477474
0.8075 Intermediate Similarity NPC475152
0.8075 Intermediate Similarity NPC475584
0.8075 Intermediate Similarity NPC475394
0.8037 Intermediate Similarity NPC473755
0.8037 Intermediate Similarity NPC475513
0.8025 Intermediate Similarity NPC475892
0.7988 Intermediate Similarity NPC69425
0.7884 Intermediate Similarity NPC472375
0.787 Intermediate Similarity NPC329657
0.784 Intermediate Similarity NPC82931
0.784 Intermediate Similarity NPC172365
0.784 Intermediate Similarity NPC210729
0.7809 Intermediate Similarity NPC477466
0.7809 Intermediate Similarity NPC477469
0.7809 Intermediate Similarity NPC477473
0.7809 Intermediate Similarity NPC477471
0.7789 Intermediate Similarity NPC472392
0.7771 Intermediate Similarity NPC61717
0.7771 Intermediate Similarity NPC244380
0.776 Intermediate Similarity NPC289383
0.7749 Intermediate Similarity NPC472391
0.7735 Intermediate Similarity NPC13989
0.7727 Intermediate Similarity NPC295408
0.7727 Intermediate Similarity NPC150893
0.7727 Intermediate Similarity NPC329960
0.772 Intermediate Similarity NPC116862
0.7716 Intermediate Similarity NPC243680
0.7716 Intermediate Similarity NPC200788
0.7651 Intermediate Similarity NPC214821
0.7651 Intermediate Similarity NPC298067
0.764 Intermediate Similarity NPC280941
0.764 Intermediate Similarity NPC235772
0.764 Intermediate Similarity NPC75318
0.7627 Intermediate Similarity NPC473641
0.7627 Intermediate Similarity NPC473797
0.7627 Intermediate Similarity NPC475300
0.7627 Intermediate Similarity NPC475437
0.7627 Intermediate Similarity NPC475505
0.7627 Intermediate Similarity NPC475464
0.7619 Intermediate Similarity NPC31171
0.7619 Intermediate Similarity NPC237240
0.7602 Intermediate Similarity NPC475447
0.7602 Intermediate Similarity NPC476092
0.7602 Intermediate Similarity NPC475218
0.7602 Intermediate Similarity NPC70236
0.76 Intermediate Similarity NPC476784
0.7598 Intermediate Similarity NPC475175
0.7598 Intermediate Similarity NPC475198
0.7598 Intermediate Similarity NPC475531
0.7593 Intermediate Similarity NPC145899
0.7578 Intermediate Similarity NPC76999
0.7574 Intermediate Similarity NPC298005
0.7574 Intermediate Similarity NPC36463
0.7571 Intermediate Similarity NPC475536
0.7571 Intermediate Similarity NPC165234
0.7544 Intermediate Similarity NPC474564
0.7542 Intermediate Similarity NPC473468
0.7542 Intermediate Similarity NPC473557
0.7542 Intermediate Similarity NPC475567
0.7516 Intermediate Similarity NPC73829
0.7516 Intermediate Similarity NPC119794
0.7485 Intermediate Similarity NPC111586
0.7485 Intermediate Similarity NPC108852
0.7485 Intermediate Similarity NPC193579
0.7485 Intermediate Similarity NPC298469
0.7485 Intermediate Similarity NPC261709
0.7485 Intermediate Similarity NPC141669
0.7485 Intermediate Similarity NPC201692
0.746 Intermediate Similarity NPC471754
0.746 Intermediate Similarity NPC317882
0.7459 Intermediate Similarity NPC469420
0.7459 Intermediate Similarity NPC102465
0.7458 Intermediate Similarity NPC477623
0.7453 Intermediate Similarity NPC475472
0.7447 Intermediate Similarity NPC327699
0.7409 Intermediate Similarity NPC473558
0.7409 Intermediate Similarity NPC473490
0.7407 Intermediate Similarity NPC471623
0.7407 Intermediate Similarity NPC471024
0.7399 Intermediate Similarity NPC469448
0.7399 Intermediate Similarity NPC472761
0.7396 Intermediate Similarity NPC242662
0.7396 Intermediate Similarity NPC321072
0.7396 Intermediate Similarity NPC191193
0.7396 Intermediate Similarity NPC215892
0.7391 Intermediate Similarity NPC35338
0.7391 Intermediate Similarity NPC63404
0.7391 Intermediate Similarity NPC231888
0.7391 Intermediate Similarity NPC198918
0.7391 Intermediate Similarity NPC10883
0.7391 Intermediate Similarity NPC124878
0.7391 Intermediate Similarity NPC10121
0.7391 Intermediate Similarity NPC204214
0.7391 Intermediate Similarity NPC290276
0.7391 Intermediate Similarity NPC92283
0.7371 Intermediate Similarity NPC472658
0.7371 Intermediate Similarity NPC472657
0.7368 Intermediate Similarity NPC275170
0.7368 Intermediate Similarity NPC475336
0.7368 Intermediate Similarity NPC471629
0.7368 Intermediate Similarity NPC324251
0.7368 Intermediate Similarity NPC206211
0.7368 Intermediate Similarity NPC473400
0.7368 Intermediate Similarity NPC173934
0.7368 Intermediate Similarity NPC453583
0.7368 Intermediate Similarity NPC473300
0.7368 Intermediate Similarity NPC306001
0.7365 Intermediate Similarity NPC162910
0.7358 Intermediate Similarity NPC471606
0.7358 Intermediate Similarity NPC208553
0.7358 Intermediate Similarity NPC181964
0.7351 Intermediate Similarity NPC469772
0.7351 Intermediate Similarity NPC469777
0.7351 Intermediate Similarity NPC469776
0.7351 Intermediate Similarity NPC469778
0.7351 Intermediate Similarity NPC135334
0.7351 Intermediate Similarity NPC100925
0.7351 Intermediate Similarity NPC469773
0.7351 Intermediate Similarity NPC32723
0.7351 Intermediate Similarity NPC469775
0.7351 Intermediate Similarity NPC295941
0.7351 Intermediate Similarity NPC469774
0.7349 Intermediate Similarity NPC302276
0.7346 Intermediate Similarity NPC233223
0.7346 Intermediate Similarity NPC475177
0.7346 Intermediate Similarity NPC322904
0.7346 Intermediate Similarity NPC183816
0.7346 Intermediate Similarity NPC196874
0.7346 Intermediate Similarity NPC319719
0.7346 Intermediate Similarity NPC471025
0.7346 Intermediate Similarity NPC324933
0.7346 Intermediate Similarity NPC230331
0.7346 Intermediate Similarity NPC475444
0.7346 Intermediate Similarity NPC473679
0.7345 Intermediate Similarity NPC469417
0.733 Intermediate Similarity NPC469398
0.733 Intermediate Similarity NPC33372
0.733 Intermediate Similarity NPC67246
0.7329 Intermediate Similarity NPC28069
0.7329 Intermediate Similarity NPC77651
0.7322 Intermediate Similarity NPC477488
0.7314 Intermediate Similarity NPC477905
0.7314 Intermediate Similarity NPC472548
0.7312 Intermediate Similarity NPC124828
0.7303 Intermediate Similarity NPC477736
0.7303 Intermediate Similarity NPC469399
0.7299 Intermediate Similarity NPC475561
0.7299 Intermediate Similarity NPC475417
0.7297 Intermediate Similarity NPC469421
0.7284 Intermediate Similarity NPC311178
0.7284 Intermediate Similarity NPC300655
0.7284 Intermediate Similarity NPC222951
0.7284 Intermediate Similarity NPC43589
0.7284 Intermediate Similarity NPC171007
0.7284 Intermediate Similarity NPC190849
0.7284 Intermediate Similarity NPC147032
0.7273 Intermediate Similarity NPC314941
0.7267 Intermediate Similarity NPC162925
0.7267 Intermediate Similarity NPC472268
0.7267 Intermediate Similarity NPC112492
0.7267 Intermediate Similarity NPC472269
0.7267 Intermediate Similarity NPC87153
0.7267 Intermediate Similarity NPC472270
0.7267 Intermediate Similarity NPC23020
0.7257 Intermediate Similarity NPC470153
0.7251 Intermediate Similarity NPC262216
0.725 Intermediate Similarity NPC315889
0.7247 Intermediate Similarity NPC477735
0.7246 Intermediate Similarity NPC180770
0.7246 Intermediate Similarity NPC265908
0.7241 Intermediate Similarity NPC270590
0.7241 Intermediate Similarity NPC301556
0.7241 Intermediate Similarity NPC471101
0.7241 Intermediate Similarity NPC92293
0.7241 Intermediate Similarity NPC266265
0.7241 Intermediate Similarity NPC470274
0.7232 Intermediate Similarity NPC472549
0.7232 Intermediate Similarity NPC469422
0.7232 Intermediate Similarity NPC5115
0.7232 Intermediate Similarity NPC34066
0.7229 Intermediate Similarity NPC64897
0.7229 Intermediate Similarity NPC90693

  Chemically structural similarity: II. Similar Clinical/Approved Drugs

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules.

●  The left chart: Distribution of similarity level between NPC475345 and all drugs/candidates.
●  The right table: Most similar clinical/approved drugs (Tc>=0.56 or Top200).

Similarity Score Similarity Level Drug ID Developmental Stage
0.7821 Intermediate Similarity NPD8470 Clinical (unspecified phase)
0.7663 Intermediate Similarity NPD8407 Phase 2
0.7619 Intermediate Similarity NPD7274 Clinical (unspecified phase)
0.7513 Intermediate Similarity NPD8486 Clinical (unspecified phase)
0.75 Intermediate Similarity NPD8360 Approved
0.75 Intermediate Similarity NPD8368 Discontinued
0.75 Intermediate Similarity NPD8361 Approved
0.7407 Intermediate Similarity NPD8435 Approved
0.7358 Intermediate Similarity NPD8485 Approved
0.7302 Intermediate Similarity NPD8424 Clinical (unspecified phase)
0.7283 Intermediate Similarity NPD8389 Clinical (unspecified phase)
0.7273 Intermediate Similarity NPD8320 Phase 1
0.7273 Intermediate Similarity NPD8319 Approved
0.702 Intermediate Similarity NPD7237 Clinical (unspecified phase)
0.701 Intermediate Similarity NPD7874 Approved
0.701 Intermediate Similarity NPD7875 Clinical (unspecified phase)
0.7005 Intermediate Similarity NPD7799 Discontinued
0.6976 Remote Similarity NPD7801 Approved
0.6976 Remote Similarity NPD7782 Clinical (unspecified phase)
0.6976 Remote Similarity NPD7783 Phase 2
0.6971 Remote Similarity NPD8404 Phase 2
0.697 Remote Similarity NPD7699 Phase 2
0.697 Remote Similarity NPD7700 Phase 2
0.6961 Remote Similarity NPD8151 Discontinued
0.6923 Remote Similarity NPD7966 Clinical (unspecified phase)
0.6832 Remote Similarity NPD6823 Phase 2
0.6829 Remote Similarity NPD7701 Phase 2
0.6818 Remote Similarity NPD6534 Approved
0.6818 Remote Similarity NPD6535 Approved
0.6798 Remote Similarity NPD7698 Approved
0.6798 Remote Similarity NPD7696 Phase 3
0.6798 Remote Similarity NPD7697 Approved
0.6765 Remote Similarity NPD7870 Phase 2
0.6765 Remote Similarity NPD7871 Phase 2
0.6703 Remote Similarity NPD8417 Discontinued
0.6701 Remote Similarity NPD8313 Approved
0.6701 Remote Similarity NPD8312 Approved
0.6699 Remote Similarity NPD8462 Phase 1
0.6667 Remote Similarity NPD2575 Approved
0.665 Remote Similarity NPD6778 Approved
0.665 Remote Similarity NPD6779 Approved
0.665 Remote Similarity NPD6777 Approved
0.665 Remote Similarity NPD6782 Approved
0.665 Remote Similarity NPD6776 Approved
0.665 Remote Similarity NPD6781 Approved
0.665 Remote Similarity NPD6780 Approved
0.6635 Remote Similarity NPD7930 Approved
0.6605 Remote Similarity NPD8155 Clinical (unspecified phase)
0.66 Remote Similarity NPD6214 Clinical (unspecified phase)
0.66 Remote Similarity NPD6212 Phase 3
0.66 Remote Similarity NPD6213 Phase 3
0.657 Remote Similarity NPD7999 Approved
0.6553 Remote Similarity NPD7497 Discontinued
0.653 Remote Similarity NPD8059 Phase 3
0.653 Remote Similarity NPD8058 Clinical (unspecified phase)
0.6515 Remote Similarity NPD8150 Discontinued
0.6491 Remote Similarity NPD2613 Approved
0.6485 Remote Similarity NPD8517 Approved
0.6485 Remote Similarity NPD8515 Approved
0.6485 Remote Similarity NPD8516 Approved
0.6474 Remote Similarity NPD3088 Approved
0.6474 Remote Similarity NPD3090 Approved
0.6474 Remote Similarity NPD3087 Approved
0.6474 Remote Similarity NPD3614 Approved
0.6474 Remote Similarity NPD2573 Approved
0.6474 Remote Similarity NPD2570 Approved
0.6474 Remote Similarity NPD3615 Approved
0.6474 Remote Similarity NPD2566 Approved
0.6474 Remote Similarity NPD4745 Approved
0.6474 Remote Similarity NPD2572 Clinical (unspecified phase)
0.6474 Remote Similarity NPD4746 Phase 3
0.6474 Remote Similarity NPD3089 Approved
0.6474 Remote Similarity NPD2574 Discontinued
0.6474 Remote Similarity NPD3616 Approved
0.6474 Remote Similarity NPD2571 Approved
0.6473 Remote Similarity NPD7435 Discontinued
0.6468 Remote Similarity NPD5619 Clinical (unspecified phase)
0.6444 Remote Similarity NPD8323 Discontinued
0.6417 Remote Similarity NPD8455 Phase 2
0.6411 Remote Similarity NPD7211 Clinical (unspecified phase)
0.64 Remote Similarity NPD4684 Phase 3
0.64 Remote Similarity NPD4685 Phase 3
0.64 Remote Similarity NPD4686 Approved
0.6398 Remote Similarity NPD7749 Clinical (unspecified phase)
0.6396 Remote Similarity NPD8658 Clinical (unspecified phase)
0.6392 Remote Similarity NPD7228 Approved
0.6391 Remote Similarity NPD8468 Phase 2
0.6391 Remote Similarity NPD8074 Phase 3
0.6389 Remote Similarity NPD8166 Discontinued
0.6386 Remote Similarity NPD7879 Clinical (unspecified phase)
0.6386 Remote Similarity NPD8513 Phase 3
0.6379 Remote Similarity NPD7715 Approved
0.6379 Remote Similarity NPD7714 Approved
0.6358 Remote Similarity NPD5952 Clinical (unspecified phase)
0.6354 Remote Similarity NPD7315 Approved
0.6328 Remote Similarity NPD6852 Discontinued
0.6324 Remote Similarity NPD7239 Suspended
0.6319 Remote Similarity NPD7236 Approved
0.6313 Remote Similarity NPD7702 Clinical (unspecified phase)
0.631 Remote Similarity NPD8328 Phase 3
0.6308 Remote Similarity NPD7827 Phase 1
0.63 Remote Similarity NPD5036 Approved
0.629 Remote Similarity NPD6591 Clinical (unspecified phase)
0.628 Remote Similarity NPD7565 Approved
0.6279 Remote Similarity NPD8390 Approved
0.6279 Remote Similarity NPD8392 Approved
0.6279 Remote Similarity NPD8391 Approved
0.6269 Remote Similarity NPD8434 Phase 2
0.6269 Remote Similarity NPD5038 Approved
0.6269 Remote Similarity NPD5037 Approved
0.6263 Remote Similarity NPD7240 Approved
0.625 Remote Similarity NPD5120 Approved
0.625 Remote Similarity NPD5121 Approved
0.625 Remote Similarity NPD5119 Approved
0.6222 Remote Similarity NPD7266 Discontinued
0.6219 Remote Similarity NPD8055 Clinical (unspecified phase)
0.6218 Remote Similarity NPD8127 Discontinued
0.6209 Remote Similarity NPD7625 Phase 1
0.6209 Remote Similarity NPD3400 Discontinued
0.6205 Remote Similarity NPD7997 Clinical (unspecified phase)
0.6202 Remote Similarity NPD8285 Discontinued
0.62 Remote Similarity NPD5035 Approved
0.6199 Remote Similarity NPD8448 Approved
0.619 Remote Similarity NPD5981 Approved
0.6181 Remote Similarity NPD5030 Phase 2
0.6176 Remote Similarity NPD4218 Approved
0.6176 Remote Similarity NPD2608 Approved
0.6176 Remote Similarity NPD2610 Approved
0.6176 Remote Similarity NPD4215 Approved
0.6176 Remote Similarity NPD2612 Approved
0.6176 Remote Similarity NPD2609 Approved
0.6176 Remote Similarity NPD4217 Approved
0.6176 Remote Similarity NPD3131 Approved
0.6176 Remote Similarity NPD3132 Approved
0.6176 Remote Similarity NPD2611 Approved
0.6176 Remote Similarity NPD4216 Approved
0.6171 Remote Similarity NPD4738 Phase 2
0.6159 Remote Similarity NPD8133 Approved
0.6154 Remote Similarity NPD8051 Clinical (unspecified phase)
0.6154 Remote Similarity NPD4420 Approved
0.615 Remote Similarity NPD5034 Approved
0.615 Remote Similarity NPD5028 Approved
0.615 Remote Similarity NPD36 Approved
0.615 Remote Similarity NPD5026 Approved
0.615 Remote Similarity NPD4955 Approved
0.615 Remote Similarity NPD4954 Approved
0.6146 Remote Similarity NPD7296 Approved
0.6146 Remote Similarity NPD7975 Clinical (unspecified phase)
0.6145 Remote Similarity NPD2567 Approved
0.6145 Remote Similarity NPD2569 Approved
0.614 Remote Similarity NPD8451 Approved
0.6136 Remote Similarity NPD4621 Approved
0.6136 Remote Similarity NPD4619 Approved
0.6131 Remote Similarity NPD8377 Approved
0.6131 Remote Similarity NPD8294 Approved
0.6127 Remote Similarity NPD8397 Clinical (unspecified phase)
0.6127 Remote Similarity NPD6836 Approved
0.6127 Remote Similarity NPD7319 Approved
0.612 Remote Similarity NPD7488 Clinical (unspecified phase)
0.6118 Remote Similarity NPD7830 Approved
0.6118 Remote Similarity NPD7829 Approved
0.6117 Remote Similarity NPD7458 Discontinued
0.6114 Remote Similarity NPD4617 Approved
0.6114 Remote Similarity NPD5203 Approved
0.6114 Remote Similarity NPD5005 Approved
0.6114 Remote Similarity NPD4620 Approved
0.6114 Remote Similarity NPD5202 Clinical (unspecified phase)
0.6114 Remote Similarity NPD5201 Approved
0.6114 Remote Similarity NPD5006 Approved
0.6105 Remote Similarity NPD37 Approved
0.6102 Remote Similarity NPD7961 Discontinued
0.6095 Remote Similarity NPD8379 Approved
0.6095 Remote Similarity NPD8335 Approved
0.6095 Remote Similarity NPD7503 Approved
0.6095 Remote Similarity NPD8380 Approved
0.6095 Remote Similarity NPD8296 Approved
0.6095 Remote Similarity NPD8378 Approved
0.6094 Remote Similarity NPD4967 Phase 2
0.6094 Remote Similarity NPD4965 Approved
0.6094 Remote Similarity NPD4966 Approved
0.6089 Remote Similarity NPD7090 Clinical (unspecified phase)
0.6082 Remote Similarity NPD8299 Approved
0.6082 Remote Similarity NPD8341 Approved
0.6082 Remote Similarity NPD8340 Approved
0.6082 Remote Similarity NPD8342 Approved
0.6078 Remote Similarity NPD7906 Approved
0.6078 Remote Similarity NPD6841 Approved
0.6078 Remote Similarity NPD6843 Phase 3
0.6078 Remote Similarity NPD6842 Approved
0.6075 Remote Similarity NPD7583 Approved
0.6073 Remote Similarity NPD7972 Discontinued
0.607 Remote Similarity NPD5032 Approved
0.6067 Remote Similarity NPD8265 Approved
0.6067 Remote Similarity NPD6309 Approved
0.6067 Remote Similarity NPD6310 Approved
0.6067 Remote Similarity NPD6311 Approved
0.6066 Remote Similarity NPD2493 Approved
0.6066 Remote Similarity NPD2494 Approved
0.6059 Remote Similarity NPD5126 Approved
0.6059 Remote Similarity NPD5125 Phase 3

  Bioactivity similarity: Similar Natural Products in NPASS

Bioactivity similarity was calculated based on bioactivity descriptors of compounds. The bioactivity descriptors were calculated by a recently developed AI algorithm Chemical Checker (CC) [Nature Biotechnology, 38:1087–1096, 2020; Nature Communications, 12:3932, 2021], which evaluated bioactivity similarities at five levels:
A: chemistry similarity;
B: biological targets similarity;
C: networks similarity;
D: cell-based bioactivity similarity;
E: similarity based on clinical data.

Those 5 categories of CC bioactivity descriptors were calculated and then subjected to manifold projection using UMAP algorithm, to project all NPs on a 2-Dimensional space. The current NP was highlighted with a small circle in the 2-D map. Below figures: left-to-right, A-to-E.

A: chemistry similarity
B: biological targets similarity
C: networks similarity
D: cell-based bioactivity similarity
E: similarity based on clinical data