Structure

Physi-Chem Properties

Molecular Weight:  2769.48
Volume:  2751.249
LogP:  13.459
LogD:  5.726
LogS:  -3.663
# Rotatable Bonds:  76
TPSA:  759.14
# H-Bond Aceptor:  54
# H-Bond Donor:  18
# Rings:  13
# Heavy Atoms:  54

MedChem Properties

QED Drug-Likeness Score:  0.013
Synthetic Accessibility Score:  9.332
Fsp3:  0.829
Lipinski Rule-of-5:  Rejected
Pfizer Rule:  Accepted
GSK Rule:  Rejected
BMS Rule:  2
Golden Triangle Rule:  Rejected
Chelating Alert:  0
PAINS Alert:  0

ADMET Properties (ADMETlab2.0)

ADMET: Absorption

Caco-2 Permeability:  -5.271
MDCK Permeability:  0.00028264077263884246
Pgp-inhibitor:  0.99
Pgp-substrate:  1.0
Human Intestinal Absorption (HIA):  1.0
20% Bioavailability (F20%):  0.0
30% Bioavailability (F30%):  0.778

ADMET: Distribution

Blood-Brain-Barrier Penetration (BBB):  0.0
Plasma Protein Binding (PPB):  105.1747055053711%
Volume Distribution (VD):  -0.249
Pgp-substrate:  4.837639331817627%

ADMET: Metabolism

CYP1A2-inhibitor:  0.0
CYP1A2-substrate:  0.004
CYP2C19-inhibitor:  0.002
CYP2C19-substrate:  0.02
CYP2C9-inhibitor:  0.025
CYP2C9-substrate:  0.001
CYP2D6-inhibitor:  0.429
CYP2D6-substrate:  0.0
CYP3A4-inhibitor:  0.458
CYP3A4-substrate:  0.002

ADMET: Excretion

Clearance (CL):  -1.467
Half-life (T1/2):  0.01

ADMET: Toxicity

hERG Blockers:  0.818
Human Hepatotoxicity (H-HT):  0.922
Drug-inuced Liver Injury (DILI):  0.868
AMES Toxicity:  0.045
Rat Oral Acute Toxicity:  0.488
Maximum Recommended Daily Dose:  0.0
Skin Sensitization:  0.977
Carcinogencity:  0.016
Eye Corrosion:  0.003
Eye Irritation:  0.001
Respiratory Toxicity:  0.019

Download Data

Data Type Select
General Info & Identifiers & Properties  
Structure MOL file  
Source Organisms  
Biological Activities  
Similar NPs/Drugs  

  Natural Product: NPC471024

Natural Product ID:  NPC471024
Common Name*:   Purgin Ii
IUPAC Name:   n.a.
Synonyms:   Purgin II
Standard InCHIKey:  KBURMVDNPRIDQL-RBNNPITQSA-N
Standard InCHI:  InChI=1S/C140H224O54/c1-15-21-25-27-31-39-55-67-95(147)183-127-125(193-132-107(159)102(154)99(151)89(73-141)175-132)117(189-134-111(163)120(115(81(11)168-134)185-129(165)77(7)19-5)180-97(149)71-69-85-57-47-43-48-58-85)83(13)171-139(127)187-113-79(9)167-131(108(160)105(113)157)191-122-103(155)100(152)90(74-142)176-137(122)173-87(61-45-23-17-3)63-51-37-33-29-35-41-53-65-93(145)179-119-92(76-144)178-133(109(161)106(119)158)194-126-118(190-135-112(164)121(116(82(12)169-135)186-130(166)78(8)20-6)181-98(150)72-70-86-59-49-44-50-60-86)84(14)172-140(128(126)184-96(148)68-56-40-32-28-26-22-16-2)188-114-80(10)170-136-124(110(114)162)182-94(146)66-54-42-36-30-34-38-52-64-88(62-46-24-18-4)174-138-123(192-136)104(156)101(153)91(75-143)177-138/h43-44,47-50,57-60,69-72,77-84,87-92,99-128,131-144,151-164H,15-42,45-46,51-56,61-68,73-76H2,1-14H3/b71-69+,72-70+/t77-,78-,79-,80-,81-,82-,83-,84-,87-,88-,89+,90+,91+,92+,99+,100+,101+,102-,103-,104-,105-,106+,107+,108+,109+,110+,111+,112+,113-,114-,115-,116-,117-,118-,119+,120-,121-,122+,123+,124+,125+,126+,127+,128+,131-,132-,133-,134-,135-,136-,137+,138+,139-,140-/m0/s1
SMILES:  CCCCCCCCCC(=O)O[C@H]1[C@@H](O[C@H]([C@@H]([C@H]1O[C@@H]1O[C@H](CO)[C@H]([C@@H]([C@H]1O)O)OC(=O)CCCCCCCCC[C@@H](O[C@@H]1O[C@H](CO)[C@H]([C@@H]([C@H]1O[C@@H]1O[C@@H](C)[C@@H]([C@H]([C@H]1O)O)O[C@@H]1O[C@@H](C)[C@@H]([C@H]([C@H]1OC(=O)CCCCCCCCC)O[C@@H]1O[C@H](CO)[C@H]([C@@H]([C@H]1O)O)O)O[C@@H]1O[C@@H](C)[C@@H]([C@H]([C@H]1O)OC(=O)/C=C/c1ccccc1)OC(=O)[C@H](CC)C)O)O)CCCCC)O[C@@H]1O[C@@H](C)[C@@H]([C@H]([C@H]1O)OC(=O)/C=C/c1ccccc1)OC(=O)[C@H](CC)C)C)O[C@H]1[C@H](C)O[C@@H]2[C@@H]([C@@H]1O)OC(=O)CCCCCCCCC[C@@H](O[C@H]1[C@H](O2)[C@@H](O)[C@@H]([C@H](O1)CO)O)CCCCC
Synthetic Gene Cluster:   n.a.
ChEMBL Identifier:   CHEMBL2336636
PubChem CID:   71720744
Chemical Classification**:  
  • CHEMONTID:0000000 [Organic compounds]
    • [CHEMONTID:0000012] Lipids and lipid-like molecules
      • [CHEMONTID:0003918] Saccharolipids

*Note: the InCHIKey will be temporarily assigned as the "Common Name" if no IUPAC name or alternative short name is available.
**Note: the Chemical Classification was calculated by NPClassifier Version 1.5. Reference: PMID:34662515.

  Species Source

Organism ID Organism Name Taxonomy Level Family SuperKingdom Isolation Part Collection Location Collection Time Reference
NPO19106 Ipomoea purga Species Convolvulaceae Eukaryota n.a. aerial part n.a. PMID[21446661]
NPO19106 Ipomoea purga Species Convolvulaceae Eukaryota n.a. n.a. n.a. PMID[23273047]
NPO19106 Ipomoea purga Species Convolvulaceae Eukaryota n.a. n.a. n.a. Database[UNPD]

☑ Note for Reference:
In addition to directly collecting NP source organism data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated them from below databases:
UNPD: Universal Natural Products Database [PMID: 23638153].
StreptomeDB: a database of streptomycetes natural products [PMID: 33051671].
TM-MC: a database of medicinal materials and chemical compounds in Northeast Asian traditional medicine [PMID: 26156871].
TCM@Taiwan: a Traditional Chinese Medicine database [PMID: 21253603].
TCMID: a Traditional Chinese Medicine database [PMID: 29106634].
TCMSP: The traditional Chinese medicine systems pharmacology database and analysis platform [PMID: 24735618].
HerDing: a herb recommendation system to treat diseases using genes and chemicals [PMID: 26980517].
MetaboLights: a metabolomics database [PMID: 27010336].
FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].

  NP Quantity Composition/Concentration

Organism ID NP ID Organism Material Preparation Organism Part NP Quantity (Standard) NP Quantity (Minimum) NP Quantity (Maximum) Quantity Unit Reference

☑ Note for Reference:
In addition to directly collecting NP quantitative data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated NP quantitative records for specific NP domains (e.g., NPS from foods or herbs) from domain-specific databases. These databases include:
DUKE: Dr. Duke's Phytochemical and Ethnobotanical Databases.
PHENOL EXPLORER: is the first comprehensive database on polyphenol content in foods [PMID: 24103452], its homepage can be accessed at here.
FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].

  Biological Activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference
NPT83 Cell Line MCF7 Homo sapiens FC > 73.4 n.a. PMID[538011]
NPT83 Cell Line MCF7 Homo sapiens IC50 > 25.0 ug.mL-1 PMID[538011]
NPT668 Individual Protein P-glycoprotein 1 Homo sapiens FC > 2140.6 n.a. PMID[538011]
NPT668 Individual Protein P-glycoprotein 1 Homo sapiens FC > 1687.5 n.a. PMID[538011]

☑ Note for Activity Records:
☉ The quantitative biological activities were primarily integrated from ChEMBL (Version-30) database and were also directly collected from PubMed literature. PubMed PMID was provided as the reference link for each activity record.

  Chemically structural similarity: I. Similar Active Natural Products in NPASS

Top-200 similar NPs were calculated against the active-NP-set (includes 4,3285 NPs with experimentally-derived bioactivity available in NPASS)

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules. Tc lies between [0, 1] where '1' indicates the highest similarity. What is Tanimoto coefficient

●  The left chart: Distribution of similarity level between NPC471024 and all remaining natural products in the NPASS database.
●  The right table: Most similar natural products (Tc>=0.56 or Top200).

Similarity Score Similarity Level Natural Product ID
0.9917 High Similarity NPC471025
0.9835 High Similarity NPC35338
0.9835 High Similarity NPC290276
0.9835 High Similarity NPC198918
0.9835 High Similarity NPC124878
0.9835 High Similarity NPC10121
0.9835 High Similarity NPC10883
0.9835 High Similarity NPC63404
0.9835 High Similarity NPC231888
0.9835 High Similarity NPC204214
0.9835 High Similarity NPC92283
0.9752 High Similarity NPC77651
0.9752 High Similarity NPC28069
0.9669 High Similarity NPC162925
0.9669 High Similarity NPC87153
0.9512 High Similarity NPC147032
0.92 High Similarity NPC471026
0.9032 High Similarity NPC141970
0.9032 High Similarity NPC140561
0.8828 High Similarity NPC231627
0.876 High Similarity NPC237182
0.876 High Similarity NPC226101
0.8759 High Similarity NPC40085
0.8759 High Similarity NPC264270
0.871 High Similarity NPC476096
0.8686 High Similarity NPC111466
0.8682 High Similarity NPC148026
0.8613 High Similarity NPC284957
0.8605 High Similarity NPC114096
0.855 High Similarity NPC11025
0.8512 High Similarity NPC470825
0.8372 Intermediate Similarity NPC473881
0.8346 Intermediate Similarity NPC289415
0.8346 Intermediate Similarity NPC319995
0.8333 Intermediate Similarity NPC301857
0.8309 Intermediate Similarity NPC263829
0.8308 Intermediate Similarity NPC57607
0.8264 Intermediate Similarity NPC184633
0.8168 Intermediate Similarity NPC244454
0.8143 Intermediate Similarity NPC475513
0.8143 Intermediate Similarity NPC473755
0.814 Intermediate Similarity NPC229600
0.8108 Intermediate Similarity NPC477467
0.808 Intermediate Similarity NPC474641
0.8074 Intermediate Similarity NPC17567
0.8041 Intermediate Similarity NPC477472
0.8041 Intermediate Similarity NPC477470
0.8041 Intermediate Similarity NPC477474
0.8029 Intermediate Similarity NPC322503
0.8029 Intermediate Similarity NPC470143
0.8016 Intermediate Similarity NPC29607
0.8015 Intermediate Similarity NPC235294
0.8015 Intermediate Similarity NPC46137
0.7987 Intermediate Similarity NPC477736
0.7984 Intermediate Similarity NPC43584
0.7972 Intermediate Similarity NPC64195
0.7945 Intermediate Similarity NPC329657
0.7941 Intermediate Similarity NPC305162
0.7933 Intermediate Similarity NPC477623
0.7929 Intermediate Similarity NPC469364
0.7929 Intermediate Similarity NPC65262
0.7929 Intermediate Similarity NPC101686
0.7919 Intermediate Similarity NPC477735
0.7905 Intermediate Similarity NPC106818
0.7902 Intermediate Similarity NPC205864
0.7902 Intermediate Similarity NPC476380
0.7902 Intermediate Similarity NPC476381
0.7902 Intermediate Similarity NPC476397
0.7902 Intermediate Similarity NPC298257
0.7902 Intermediate Similarity NPC96795
0.7902 Intermediate Similarity NPC476378
0.7902 Intermediate Similarity NPC269141
0.7902 Intermediate Similarity NPC76406
0.7902 Intermediate Similarity NPC175214
0.7902 Intermediate Similarity NPC476384
0.7902 Intermediate Similarity NPC119537
0.7902 Intermediate Similarity NPC247032
0.7902 Intermediate Similarity NPC112
0.7902 Intermediate Similarity NPC476375
0.7902 Intermediate Similarity NPC264632
0.7899 Intermediate Similarity NPC38420
0.7899 Intermediate Similarity NPC136608
0.7895 Intermediate Similarity NPC475464
0.7895 Intermediate Similarity NPC473797
0.7895 Intermediate Similarity NPC473641
0.7895 Intermediate Similarity NPC475437
0.7895 Intermediate Similarity NPC475505
0.7895 Intermediate Similarity NPC475300
0.7883 Intermediate Similarity NPC225384
0.7883 Intermediate Similarity NPC138777
0.7883 Intermediate Similarity NPC246869
0.7877 Intermediate Similarity NPC475447
0.7877 Intermediate Similarity NPC476092
0.7877 Intermediate Similarity NPC70236
0.7877 Intermediate Similarity NPC475218
0.7867 Intermediate Similarity NPC476784
0.7857 Intermediate Similarity NPC475175
0.7857 Intermediate Similarity NPC475531
0.7857 Intermediate Similarity NPC471345
0.7857 Intermediate Similarity NPC475198
0.7852 Intermediate Similarity NPC87403
0.7851 Intermediate Similarity NPC469527
0.7847 Intermediate Similarity NPC471028
0.7838 Intermediate Similarity NPC69425
0.7832 Intermediate Similarity NPC148080
0.7832 Intermediate Similarity NPC469623
0.7829 Intermediate Similarity NPC475536
0.7829 Intermediate Similarity NPC165234
0.782 Intermediate Similarity NPC138798
0.781 Intermediate Similarity NPC475478
0.7808 Intermediate Similarity NPC474564
0.7801 Intermediate Similarity NPC475195
0.7792 Intermediate Similarity NPC473468
0.7792 Intermediate Similarity NPC473557
0.7792 Intermediate Similarity NPC475567
0.7778 Intermediate Similarity NPC293154
0.7762 Intermediate Similarity NPC476377
0.7762 Intermediate Similarity NPC47471
0.7761 Intermediate Similarity NPC145287
0.7756 Intermediate Similarity NPC477471
0.7756 Intermediate Similarity NPC477473
0.7756 Intermediate Similarity NPC477466
0.7756 Intermediate Similarity NPC477469
0.7755 Intermediate Similarity NPC469448
0.774 Intermediate Similarity NPC229505
0.7737 Intermediate Similarity NPC27712
0.7737 Intermediate Similarity NPC473443
0.7721 Intermediate Similarity NPC288416
0.7714 Intermediate Similarity NPC169398
0.7708 Intermediate Similarity NPC265648
0.7708 Intermediate Similarity NPC222433
0.7698 Intermediate Similarity NPC30563
0.7692 Intermediate Similarity NPC473799
0.7692 Intermediate Similarity NPC475530
0.7667 Intermediate Similarity NPC469422
0.7667 Intermediate Similarity NPC469398
0.7664 Intermediate Similarity NPC225103
0.7655 Intermediate Similarity NPC478250
0.7655 Intermediate Similarity NPC469367
0.7651 Intermediate Similarity NPC257970
0.7651 Intermediate Similarity NPC470927
0.7647 Intermediate Similarity NPC267733
0.7647 Intermediate Similarity NPC276047
0.7643 Intermediate Similarity NPC28637
0.7639 Intermediate Similarity NPC134405
0.7639 Intermediate Similarity NPC476385
0.7635 Intermediate Similarity NPC23677
0.7632 Intermediate Similarity NPC319404
0.7626 Intermediate Similarity NPC80599
0.7626 Intermediate Similarity NPC478255
0.7622 Intermediate Similarity NPC205195
0.7622 Intermediate Similarity NPC81515
0.7622 Intermediate Similarity NPC64141
0.7622 Intermediate Similarity NPC472350
0.7622 Intermediate Similarity NPC197316
0.7622 Intermediate Similarity NPC68092
0.7622 Intermediate Similarity NPC89105
0.7622 Intermediate Similarity NPC476383
0.7619 Intermediate Similarity NPC276061
0.7619 Intermediate Similarity NPC212808
0.7619 Intermediate Similarity NPC474148
0.7609 Intermediate Similarity NPC472388
0.7603 Intermediate Similarity NPC296954
0.7603 Intermediate Similarity NPC296659
0.7603 Intermediate Similarity NPC202391
0.7603 Intermediate Similarity NPC196063
0.7603 Intermediate Similarity NPC300894
0.7603 Intermediate Similarity NPC141455
0.7591 Intermediate Similarity NPC106677
0.7591 Intermediate Similarity NPC230331
0.7584 Intermediate Similarity NPC94871
0.7584 Intermediate Similarity NPC470933
0.7584 Intermediate Similarity NPC473427
0.7584 Intermediate Similarity NPC259347
0.7584 Intermediate Similarity NPC476386
0.7584 Intermediate Similarity NPC471062
0.7584 Intermediate Similarity NPC306890
0.7584 Intermediate Similarity NPC476398
0.7574 Intermediate Similarity NPC470816
0.7571 Intermediate Similarity NPC159811
0.7568 Intermediate Similarity NPC175275
0.7564 Intermediate Similarity NPC246024
0.7552 Intermediate Similarity NPC260425
0.7552 Intermediate Similarity NPC476376
0.755 Intermediate Similarity NPC34066
0.7548 Intermediate Similarity NPC295408
0.7548 Intermediate Similarity NPC150893
0.7548 Intermediate Similarity NPC329960
0.7536 Intermediate Similarity NPC225307
0.7534 Intermediate Similarity NPC105005
0.7533 Intermediate Similarity NPC182350
0.7533 Intermediate Similarity NPC35097
0.7532 Intermediate Similarity NPC477488
0.7518 Intermediate Similarity NPC471157
0.7518 Intermediate Similarity NPC190849
0.7518 Intermediate Similarity NPC171007
0.7517 Intermediate Similarity NPC28776
0.7517 Intermediate Similarity NPC220282
0.7517 Intermediate Similarity NPC120728
0.7517 Intermediate Similarity NPC473138

  Chemically structural similarity: II. Similar Clinical/Approved Drugs

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules.

●  The left chart: Distribution of similarity level between NPC471024 and all drugs/candidates.
●  The right table: Most similar clinical/approved drugs (Tc>=0.56 or Top200).

Similarity Score Similarity Level Drug ID Developmental Stage
0.7956 Intermediate Similarity NPD7966 Clinical (unspecified phase)
0.7622 Intermediate Similarity NPD7266 Discontinued
0.7383 Intermediate Similarity NPD8389 Clinical (unspecified phase)
0.7338 Intermediate Similarity NPD8455 Phase 2
0.7177 Intermediate Similarity NPD7798 Approved
0.7165 Intermediate Similarity NPD5048 Discontinued
0.7143 Intermediate Similarity NPD6647 Phase 2
0.7087 Intermediate Similarity NPD5909 Discontinued
0.7007 Intermediate Similarity NPD5126 Approved
0.7007 Intermediate Similarity NPD5125 Phase 3
0.7006 Intermediate Similarity NPD8312 Approved
0.7006 Intermediate Similarity NPD8313 Approved
0.6923 Remote Similarity NPD6686 Approved
0.6909 Remote Similarity NPD8470 Clinical (unspecified phase)
0.6894 Remote Similarity NPD8413 Clinical (unspecified phase)
0.6875 Remote Similarity NPD5952 Clinical (unspecified phase)
0.6846 Remote Similarity NPD6685 Approved
0.6842 Remote Similarity NPD969 Suspended
0.6818 Remote Similarity NPD2067 Discontinued
0.6815 Remote Similarity NPD2629 Approved
0.6812 Remote Similarity NPD8516 Approved
0.6812 Remote Similarity NPD8515 Approved
0.6812 Remote Similarity NPD8517 Approved
0.6807 Remote Similarity NPD7804 Clinical (unspecified phase)
0.6786 Remote Similarity NPD7685 Pre-registration
0.6783 Remote Similarity NPD6007 Clinical (unspecified phase)
0.677 Remote Similarity NPD4381 Clinical (unspecified phase)
0.6766 Remote Similarity NPD7472 Approved
0.6766 Remote Similarity NPD7074 Phase 3
0.6747 Remote Similarity NPD7799 Discontinued
0.6747 Remote Similarity NPD7228 Approved
0.6746 Remote Similarity NPD7808 Phase 3
0.6732 Remote Similarity NPD6190 Approved
0.6707 Remote Similarity NPD7054 Approved
0.6693 Remote Similarity NPD8029 Clinical (unspecified phase)
0.6691 Remote Similarity NPD8513 Phase 3
0.6686 Remote Similarity NPD7240 Approved
0.6686 Remote Similarity NPD7251 Discontinued
0.664 Remote Similarity NPD5122 Clinical (unspecified phase)
0.6627 Remote Similarity NPD6797 Phase 2
0.6618 Remote Similarity NPD6010 Discontinued
0.6615 Remote Similarity NPD5738 Clinical (unspecified phase)
0.6615 Remote Similarity NPD5765 Approved
0.66 Remote Similarity NPD7097 Phase 1
0.66 Remote Similarity NPD4978 Clinical (unspecified phase)
0.6593 Remote Similarity NPD6912 Phase 3
0.6558 Remote Similarity NPD4628 Phase 3
0.6554 Remote Similarity NPD6233 Phase 2
0.6534 Remote Similarity NPD7879 Clinical (unspecified phase)
0.6519 Remote Similarity NPD5403 Approved
0.6512 Remote Similarity NPD1238 Approved
0.6512 Remote Similarity NPD2066 Phase 3
0.6497 Remote Similarity NPD5401 Approved
0.6493 Remote Similarity NPD2182 Approved
0.6491 Remote Similarity NPD8368 Discontinued
0.6471 Remote Similarity NPD7702 Clinical (unspecified phase)
0.6452 Remote Similarity NPD8166 Discontinued
0.6438 Remote Similarity NPD7458 Discontinued
0.6437 Remote Similarity NPD8055 Clinical (unspecified phase)
0.6434 Remote Similarity NPD5926 Approved
0.6434 Remote Similarity NPD9495 Approved
0.6434 Remote Similarity NPD1091 Approved
0.6433 Remote Similarity NPD6143 Clinical (unspecified phase)
0.6423 Remote Similarity NPD8133 Approved
0.6423 Remote Similarity NPD6858 Approved
0.6423 Remote Similarity NPD7094 Approved
0.642 Remote Similarity NPD37 Approved
0.6413 Remote Similarity NPD8320 Phase 1
0.6413 Remote Similarity NPD8319 Approved
0.6403 Remote Similarity NPD4198 Discontinued
0.6402 Remote Similarity NPD4967 Phase 2
0.6402 Remote Similarity NPD4966 Approved
0.6402 Remote Similarity NPD4965 Approved
0.64 Remote Similarity NPD6698 Approved
0.64 Remote Similarity NPD5120 Approved
0.64 Remote Similarity NPD46 Approved
0.64 Remote Similarity NPD5121 Approved
0.64 Remote Similarity NPD5119 Approved
0.6398 Remote Similarity NPD4380 Phase 2
0.6397 Remote Similarity NPD4141 Clinical (unspecified phase)
0.6397 Remote Similarity NPD2181 Clinical (unspecified phase)
0.6395 Remote Similarity NPD6559 Discontinued
0.6389 Remote Similarity NPD6637 Approved
0.638 Remote Similarity NPD7096 Clinical (unspecified phase)
0.6379 Remote Similarity NPD8407 Phase 2
0.6376 Remote Similarity NPD6798 Discontinued
0.6376 Remote Similarity NPD6859 Clinical (unspecified phase)
0.6369 Remote Similarity NPD7236 Approved
0.6364 Remote Similarity NPD1931 Clinical (unspecified phase)
0.6364 Remote Similarity NPD1930 Approved
0.6364 Remote Similarity NPD7075 Discontinued
0.6364 Remote Similarity NPD7829 Approved
0.6364 Remote Similarity NPD7830 Approved
0.6364 Remote Similarity NPD1929 Approved
0.6358 Remote Similarity NPD4338 Clinical (unspecified phase)
0.6358 Remote Similarity NPD6355 Discontinued
0.6341 Remote Similarity NPD5402 Approved
0.6338 Remote Similarity NPD7503 Approved
0.6337 Remote Similarity NPD7993 Clinical (unspecified phase)
0.6331 Remote Similarity NPD690 Clinical (unspecified phase)
0.6325 Remote Similarity NPD6234 Discontinued
0.632 Remote Similarity NPD5346 Phase 2
0.632 Remote Similarity NPD5347 Phase 2
0.632 Remote Similarity NPD689 Discontinued
0.6319 Remote Similarity NPD4807 Approved
0.6319 Remote Similarity NPD4806 Approved
0.6316 Remote Similarity NPD1237 Approved
0.6309 Remote Similarity NPD7008 Discontinued
0.6307 Remote Similarity NPD8150 Discontinued
0.6307 Remote Similarity NPD8424 Clinical (unspecified phase)
0.6306 Remote Similarity NPD7274 Clinical (unspecified phase)
0.6303 Remote Similarity NPD4868 Clinical (unspecified phase)
0.6294 Remote Similarity NPD5306 Approved
0.6294 Remote Similarity NPD5305 Approved
0.6279 Remote Similarity NPD1989 Approved
0.6273 Remote Similarity NPD1653 Approved
0.6273 Remote Similarity NPD7239 Suspended
0.627 Remote Similarity NPD3672 Approved
0.627 Remote Similarity NPD7838 Discovery
0.627 Remote Similarity NPD3673 Approved
0.6268 Remote Similarity NPD7741 Discontinued
0.6268 Remote Similarity NPD9545 Approved
0.6268 Remote Similarity NPD8377 Approved
0.6268 Remote Similarity NPD8294 Approved
0.6264 Remote Similarity NPD7700 Phase 2
0.6264 Remote Similarity NPD7699 Phase 2
0.6259 Remote Similarity NPD2797 Approved
0.6257 Remote Similarity NPD3818 Discontinued
0.625 Remote Similarity NPD4136 Approved
0.625 Remote Similarity NPD1933 Approved
0.625 Remote Similarity NPD8127 Discontinued
0.625 Remote Similarity NPD4135 Approved
0.625 Remote Similarity NPD4106 Approved
0.625 Remote Similarity NPD7199 Phase 2
0.625 Remote Similarity NPD8328 Phase 3
0.625 Remote Similarity NPD6831 Clinical (unspecified phase)
0.6242 Remote Similarity NPD4617 Approved
0.6242 Remote Similarity NPD2613 Approved
0.6242 Remote Similarity NPD6832 Phase 2
0.6242 Remote Similarity NPD4620 Approved
0.6242 Remote Similarity NPD5203 Approved
0.6242 Remote Similarity NPD5201 Approved
0.6241 Remote Similarity NPD694 Clinical (unspecified phase)
0.6236 Remote Similarity NPD8361 Approved
0.6236 Remote Similarity NPD8360 Approved
0.6236 Remote Similarity NPD8435 Approved
0.6234 Remote Similarity NPD7033 Discontinued
0.6226 Remote Similarity NPD6799 Approved
0.6225 Remote Similarity NPD4062 Phase 3
0.6225 Remote Similarity NPD7961 Discontinued
0.6225 Remote Similarity NPD7715 Approved
0.6225 Remote Similarity NPD7714 Approved
0.6224 Remote Similarity NPD8378 Approved
0.6224 Remote Similarity NPD8380 Approved
0.6224 Remote Similarity NPD8335 Approved
0.6224 Remote Similarity NPD8379 Approved
0.6224 Remote Similarity NPD8296 Approved
0.622 Remote Similarity NPD6801 Discontinued
0.6211 Remote Similarity NPD6980 Clinical (unspecified phase)
0.6196 Remote Similarity NPD8417 Discontinued
0.6194 Remote Similarity NPD164 Approved
0.619 Remote Similarity NPD5667 Approved
0.6188 Remote Similarity NPD7004 Clinical (unspecified phase)
0.6182 Remote Similarity NPD7819 Suspended
0.6178 Remote Similarity NPD7421 Clinical (unspecified phase)
0.6165 Remote Similarity NPD1932 Approved
0.6164 Remote Similarity NPD7507 Approved
0.6163 Remote Similarity NPD3751 Discontinued
0.616 Remote Similarity NPD1282 Approved
0.616 Remote Similarity NPD4793 Discontinued
0.6159 Remote Similarity NPD3268 Approved
0.6159 Remote Similarity NPD3764 Approved
0.6159 Remote Similarity NPD7411 Suspended
0.6149 Remote Similarity NPD2626 Approved
0.6149 Remote Similarity NPD2625 Approved
0.6149 Remote Similarity NPD2628 Approved
0.6149 Remote Similarity NPD2160 Approved
0.6149 Remote Similarity NPD2159 Approved
0.6149 Remote Similarity NPD2627 Approved
0.6145 Remote Similarity NPD8397 Clinical (unspecified phase)
0.614 Remote Similarity NPD6168 Clinical (unspecified phase)
0.614 Remote Similarity NPD6167 Clinical (unspecified phase)
0.614 Remote Similarity NPD6166 Phase 2
0.6139 Remote Similarity NPD2575 Approved
0.6139 Remote Similarity NPD1878 Clinical (unspecified phase)
0.6135 Remote Similarity NPD6591 Clinical (unspecified phase)
0.6133 Remote Similarity NPD5202 Clinical (unspecified phase)
0.6131 Remote Similarity NPD2329 Discontinued
0.6126 Remote Similarity NPD7783 Phase 2
0.6126 Remote Similarity NPD7782 Clinical (unspecified phase)
0.6124 Remote Similarity NPD1202 Approved
0.6124 Remote Similarity NPD8434 Phase 2
0.6122 Remote Similarity NPD7876 Discontinued
0.6118 Remote Similarity NPD2571 Approved
0.6118 Remote Similarity NPD3787 Discontinued
0.6118 Remote Similarity NPD3087 Approved
0.6118 Remote Similarity NPD3090 Approved
0.6118 Remote Similarity NPD2573 Approved
0.6118 Remote Similarity NPD3615 Approved
0.6118 Remote Similarity NPD4745 Approved

  Bioactivity similarity: Similar Natural Products in NPASS

Bioactivity similarity was calculated based on bioactivity descriptors of compounds. The bioactivity descriptors were calculated by a recently developed AI algorithm Chemical Checker (CC) [Nature Biotechnology, 38:1087–1096, 2020; Nature Communications, 12:3932, 2021], which evaluated bioactivity similarities at five levels:
A: chemistry similarity;
B: biological targets similarity;
C: networks similarity;
D: cell-based bioactivity similarity;
E: similarity based on clinical data.

Those 5 categories of CC bioactivity descriptors were calculated and then subjected to manifold projection using UMAP algorithm, to project all NPs on a 2-Dimensional space. The current NP was highlighted with a small circle in the 2-D map. Below figures: left-to-right, A-to-E.

A: chemistry similarity
B: biological targets similarity
C: networks similarity
D: cell-based bioactivity similarity
E: similarity based on clinical data