Structure

Physi-Chem Properties

Molecular Weight:  2797.51
Volume:  2785.841
LogP:  14.511
LogD:  6.155
LogS:  -3.646
# Rotatable Bonds:  80
TPSA:  759.14
# H-Bond Aceptor:  54
# H-Bond Donor:  18
# Rings:  13
# Heavy Atoms:  54

MedChem Properties

QED Drug-Likeness Score:  0.013
Synthetic Accessibility Score:  9.324
Fsp3:  0.831
Lipinski Rule-of-5:  Rejected
Pfizer Rule:  Accepted
GSK Rule:  Rejected
BMS Rule:  2
Golden Triangle Rule:  Rejected
Chelating Alert:  0
PAINS Alert:  0

ADMET Properties (ADMETlab2.0)

ADMET: Absorption

Caco-2 Permeability:  -5.198
MDCK Permeability:  9.859426791081205e-05
Pgp-inhibitor:  0.682
Pgp-substrate:  1.0
Human Intestinal Absorption (HIA):  1.0
20% Bioavailability (F20%):  0.0
30% Bioavailability (F30%):  0.97

ADMET: Distribution

Blood-Brain-Barrier Penetration (BBB):  0.0
Plasma Protein Binding (PPB):  108.24555206298828%
Volume Distribution (VD):  -0.313
Pgp-substrate:  4.231544494628906%

ADMET: Metabolism

CYP1A2-inhibitor:  0.0
CYP1A2-substrate:  0.002
CYP2C19-inhibitor:  0.003
CYP2C19-substrate:  0.016
CYP2C9-inhibitor:  0.014
CYP2C9-substrate:  0.004
CYP2D6-inhibitor:  0.715
CYP2D6-substrate:  0.0
CYP3A4-inhibitor:  0.258
CYP3A4-substrate:  0.001

ADMET: Excretion

Clearance (CL):  -1.697
Half-life (T1/2):  0.019

ADMET: Toxicity

hERG Blockers:  0.836
Human Hepatotoxicity (H-HT):  0.734
Drug-inuced Liver Injury (DILI):  0.843
AMES Toxicity:  0.051
Rat Oral Acute Toxicity:  0.523
Maximum Recommended Daily Dose:  0.0
Skin Sensitization:  0.984
Carcinogencity:  0.024
Eye Corrosion:  0.003
Eye Irritation:  0.001
Respiratory Toxicity:  0.016

Download Data

Data Type Select
General Info & Identifiers & Properties  
Structure MOL file  
Source Organisms  
Biological Activities  
Similar NPs/Drugs  

  Natural Product: NPC471025

Natural Product ID:  NPC471025
Common Name*:   Purgin Iii
IUPAC Name:   n.a.
Synonyms:   Purgin III
Standard InCHIKey:  RIGNHXXJJDXLEF-COBCPTSWSA-N
Standard InCHI:  InChI=1S/C142H228O54/c1-13-19-25-27-31-39-57-71-99(151)187-131-129(195-134-111(163)106(158)103(155)91(77-143)177-134)121(191-136-115(167)124(184-101(153)75-73-87-59-49-43-50-60-87)119(83(9)170-136)181-95(147)67-47-23-17-5)85(11)173-141(131)189-117-81(7)169-133(112(164)109(117)161)193-126-107(159)104(156)92(78-144)178-139(126)175-89(63-45-21-15-3)65-53-37-33-29-35-41-55-69-97(149)183-123-94(80-146)180-135(113(165)110(123)162)196-130-122(192-137-116(168)125(185-102(154)76-74-88-61-51-44-52-62-88)120(84(10)171-137)182-96(148)68-48-24-18-6)86(12)174-142(132(130)188-100(152)72-58-40-32-28-26-20-14-2)190-118-82(8)172-138-128(114(118)166)186-98(150)70-56-42-36-30-34-38-54-66-90(64-46-22-16-4)176-140-127(194-138)108(160)105(157)93(79-145)179-140/h43-44,49-52,59-62,73-76,81-86,89-94,103-146,155-168H,13-42,45-48,53-58,63-72,77-80H2,1-12H3/b75-73+,76-74+/t81-,82-,83-,84-,85-,86-,89-,90-,91+,92+,93+,94+,103+,104+,105+,106-,107-,108-,109-,110+,111+,112+,113+,114+,115+,116+,117-,118-,119-,120-,121-,122-,123+,124-,125-,126+,127+,128+,129+,130+,131+,132+,133-,134-,135-,136-,137-,138-,139+,140+,141-,142-/m0/s1
SMILES:  CCCCCCCCCC(=O)O[C@H]1[C@@H](O[C@H]([C@@H]([C@H]1O[C@@H]1O[C@H](CO)[C@H]([C@@H]([C@H]1O)O)OC(=O)CCCCCCCCC[C@@H](O[C@@H]1O[C@H](CO)[C@H]([C@@H]([C@H]1O[C@@H]1O[C@@H](C)[C@@H]([C@H]([C@H]1O)O)O[C@@H]1O[C@@H](C)[C@@H]([C@H]([C@H]1OC(=O)CCCCCCCCC)O[C@@H]1O[C@H](CO)[C@H]([C@@H]([C@H]1O)O)O)O[C@@H]1O[C@@H](C)[C@@H]([C@H]([C@H]1O)OC(=O)/C=C/c1ccccc1)OC(=O)CCCCC)O)O)CCCCC)O[C@@H]1O[C@@H](C)[C@@H]([C@H]([C@H]1O)OC(=O)/C=C/c1ccccc1)OC(=O)CCCCC)C)O[C@H]1[C@H](C)O[C@@H]2[C@@H]([C@@H]1O)OC(=O)CCCCCCCCC[C@@H](O[C@H]1[C@H](O2)[C@@H](O)[C@@H]([C@H](O1)CO)O)CCCCC
Synthetic Gene Cluster:   n.a.
ChEMBL Identifier:   CHEMBL2336637
PubChem CID:   71720092
Chemical Classification**:  
  • CHEMONTID:0000000 [Organic compounds]
    • [CHEMONTID:0000012] Lipids and lipid-like molecules
      • [CHEMONTID:0003918] Saccharolipids

*Note: the InCHIKey will be temporarily assigned as the "Common Name" if no IUPAC name or alternative short name is available.
**Note: the Chemical Classification was calculated by NPClassifier Version 1.5. Reference: PMID:34662515.

  Species Source

Organism ID Organism Name Taxonomy Level Family SuperKingdom Isolation Part Collection Location Collection Time Reference
NPO19106 Ipomoea purga Species Convolvulaceae Eukaryota n.a. aerial part n.a. PMID[21446661]
NPO19106 Ipomoea purga Species Convolvulaceae Eukaryota n.a. n.a. n.a. PMID[23273047]
NPO19106 Ipomoea purga Species Convolvulaceae Eukaryota n.a. n.a. n.a. Database[UNPD]

☑ Note for Reference:
In addition to directly collecting NP source organism data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated them from below databases:
UNPD: Universal Natural Products Database [PMID: 23638153].
StreptomeDB: a database of streptomycetes natural products [PMID: 33051671].
TM-MC: a database of medicinal materials and chemical compounds in Northeast Asian traditional medicine [PMID: 26156871].
TCM@Taiwan: a Traditional Chinese Medicine database [PMID: 21253603].
TCMID: a Traditional Chinese Medicine database [PMID: 29106634].
TCMSP: The traditional Chinese medicine systems pharmacology database and analysis platform [PMID: 24735618].
HerDing: a herb recommendation system to treat diseases using genes and chemicals [PMID: 26980517].
MetaboLights: a metabolomics database [PMID: 27010336].
FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].

  NP Quantity Composition/Concentration

Organism ID NP ID Organism Material Preparation Organism Part NP Quantity (Standard) NP Quantity (Minimum) NP Quantity (Maximum) Quantity Unit Reference

☑ Note for Reference:
In addition to directly collecting NP quantitative data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated NP quantitative records for specific NP domains (e.g., NPS from foods or herbs) from domain-specific databases. These databases include:
DUKE: Dr. Duke's Phytochemical and Ethnobotanical Databases.
PHENOL EXPLORER: is the first comprehensive database on polyphenol content in foods [PMID: 24103452], its homepage can be accessed at here.
FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].

  Biological Activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference
NPT83 Cell Line MCF7 Homo sapiens IC50 > 25.0 ug.mL-1 PMID[536009]
NPT83 Cell Line MCF7 Homo sapiens FC = 4.7 n.a. PMID[536009]
NPT668 Individual Protein P-glycoprotein 1 Homo sapiens FC = 6.5 n.a. PMID[536009]
NPT668 Individual Protein P-glycoprotein 1 Homo sapiens FC = 6.4 n.a. PMID[536009]

☑ Note for Activity Records:
☉ The quantitative biological activities were primarily integrated from ChEMBL (Version-30) database and were also directly collected from PubMed literature. PubMed PMID was provided as the reference link for each activity record.

  Chemically structural similarity: I. Similar Active Natural Products in NPASS

Top-200 similar NPs were calculated against the active-NP-set (includes 4,3285 NPs with experimentally-derived bioactivity available in NPASS)

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules. Tc lies between [0, 1] where '1' indicates the highest similarity. What is Tanimoto coefficient

●  The left chart: Distribution of similarity level between NPC471025 and all remaining natural products in the NPASS database.
●  The right table: Most similar natural products (Tc>=0.56 or Top200).

Similarity Score Similarity Level Natural Product ID
0.9917 High Similarity NPC471024
0.9833 High Similarity NPC28069
0.9833 High Similarity NPC77651
0.9752 High Similarity NPC124878
0.9752 High Similarity NPC290276
0.9752 High Similarity NPC10121
0.9752 High Similarity NPC10883
0.9752 High Similarity NPC231888
0.9752 High Similarity NPC35338
0.9752 High Similarity NPC198918
0.9752 High Similarity NPC63404
0.9752 High Similarity NPC92283
0.9752 High Similarity NPC204214
0.975 High Similarity NPC87153
0.975 High Similarity NPC162925
0.9431 High Similarity NPC147032
0.912 High Similarity NPC471026
0.9106 High Similarity NPC140561
0.9106 High Similarity NPC141970
0.8898 High Similarity NPC231627
0.8828 High Similarity NPC226101
0.8828 High Similarity NPC237182
0.878 High Similarity NPC476096
0.875 High Similarity NPC148026
0.8686 High Similarity NPC264270
0.8686 High Similarity NPC40085
0.8672 High Similarity NPC114096
0.8615 High Similarity NPC11025
0.8613 High Similarity NPC111466
0.8583 High Similarity NPC470825
0.854 High Similarity NPC284957
0.8438 Intermediate Similarity NPC473881
0.8397 Intermediate Similarity NPC301857
0.8372 Intermediate Similarity NPC57607
0.837 Intermediate Similarity NPC263829
0.8333 Intermediate Similarity NPC184633
0.8271 Intermediate Similarity NPC289415
0.8271 Intermediate Similarity NPC319995
0.8231 Intermediate Similarity NPC244454
0.8203 Intermediate Similarity NPC229600
0.8145 Intermediate Similarity NPC474641
0.808 Intermediate Similarity NPC29607
0.8074 Intermediate Similarity NPC235294
0.8074 Intermediate Similarity NPC46137
0.8071 Intermediate Similarity NPC473755
0.8071 Intermediate Similarity NPC475513
0.8049 Intermediate Similarity NPC43584
0.8041 Intermediate Similarity NPC477467
0.8028 Intermediate Similarity NPC64195
0.8 Intermediate Similarity NPC17567
0.7973 Intermediate Similarity NPC477470
0.7973 Intermediate Similarity NPC477472
0.7973 Intermediate Similarity NPC477474
0.7959 Intermediate Similarity NPC106818
0.7958 Intermediate Similarity NPC76406
0.7958 Intermediate Similarity NPC269141
0.7958 Intermediate Similarity NPC205864
0.7958 Intermediate Similarity NPC119537
0.7958 Intermediate Similarity NPC476375
0.7958 Intermediate Similarity NPC247032
0.7958 Intermediate Similarity NPC112
0.7958 Intermediate Similarity NPC264632
0.7958 Intermediate Similarity NPC175214
0.7958 Intermediate Similarity NPC476378
0.7958 Intermediate Similarity NPC476380
0.7958 Intermediate Similarity NPC476381
0.7958 Intermediate Similarity NPC298257
0.7958 Intermediate Similarity NPC476397
0.7958 Intermediate Similarity NPC96795
0.7958 Intermediate Similarity NPC476384
0.7956 Intermediate Similarity NPC322503
0.7956 Intermediate Similarity NPC470143
0.7941 Intermediate Similarity NPC225384
0.7941 Intermediate Similarity NPC138777
0.7941 Intermediate Similarity NPC246869
0.7919 Intermediate Similarity NPC477736
0.7917 Intermediate Similarity NPC469527
0.7914 Intermediate Similarity NPC471345
0.7905 Intermediate Similarity NPC87403
0.7902 Intermediate Similarity NPC471028
0.7887 Intermediate Similarity NPC469623
0.7887 Intermediate Similarity NPC148080
0.7877 Intermediate Similarity NPC329657
0.7868 Intermediate Similarity NPC305162
0.7867 Intermediate Similarity NPC477623
0.7857 Intermediate Similarity NPC101686
0.7857 Intermediate Similarity NPC469364
0.7857 Intermediate Similarity NPC65262
0.7852 Intermediate Similarity NPC477735
0.7829 Intermediate Similarity NPC475464
0.7829 Intermediate Similarity NPC475437
0.7829 Intermediate Similarity NPC473797
0.7829 Intermediate Similarity NPC475505
0.7829 Intermediate Similarity NPC473641
0.7829 Intermediate Similarity NPC475300
0.7826 Intermediate Similarity NPC136608
0.7826 Intermediate Similarity NPC38420
0.7817 Intermediate Similarity NPC47471
0.7817 Intermediate Similarity NPC476377
0.7808 Intermediate Similarity NPC476092
0.7808 Intermediate Similarity NPC475218
0.7808 Intermediate Similarity NPC475447
0.7808 Intermediate Similarity NPC70236
0.78 Intermediate Similarity NPC476784
0.7794 Intermediate Similarity NPC27712
0.7793 Intermediate Similarity NPC229505
0.7792 Intermediate Similarity NPC475198
0.7792 Intermediate Similarity NPC475531
0.7792 Intermediate Similarity NPC475175
0.7778 Intermediate Similarity NPC288416
0.777 Intermediate Similarity NPC69425
0.7763 Intermediate Similarity NPC165234
0.7763 Intermediate Similarity NPC475536
0.7762 Intermediate Similarity NPC265648
0.7762 Intermediate Similarity NPC222433
0.776 Intermediate Similarity NPC30563
0.7746 Intermediate Similarity NPC473799
0.7746 Intermediate Similarity NPC475530
0.7744 Intermediate Similarity NPC138798
0.774 Intermediate Similarity NPC474564
0.7737 Intermediate Similarity NPC475478
0.773 Intermediate Similarity NPC475195
0.7727 Intermediate Similarity NPC475567
0.7727 Intermediate Similarity NPC473468
0.7727 Intermediate Similarity NPC473557
0.7708 Intermediate Similarity NPC478250
0.7708 Intermediate Similarity NPC293154
0.7703 Intermediate Similarity NPC470927
0.7703 Intermediate Similarity NPC257970
0.7698 Intermediate Similarity NPC28637
0.7692 Intermediate Similarity NPC477466
0.7692 Intermediate Similarity NPC477469
0.7692 Intermediate Similarity NPC476385
0.7692 Intermediate Similarity NPC477471
0.7692 Intermediate Similarity NPC477473
0.7692 Intermediate Similarity NPC134405
0.7687 Intermediate Similarity NPC145287
0.7687 Intermediate Similarity NPC469448
0.7681 Intermediate Similarity NPC478255
0.768 Intermediate Similarity NPC474148
0.768 Intermediate Similarity NPC276061
0.7676 Intermediate Similarity NPC205195
0.7676 Intermediate Similarity NPC64141
0.7676 Intermediate Similarity NPC81515
0.7676 Intermediate Similarity NPC472350
0.7676 Intermediate Similarity NPC197316
0.7676 Intermediate Similarity NPC68092
0.7676 Intermediate Similarity NPC89105
0.7676 Intermediate Similarity NPC476383
0.7664 Intermediate Similarity NPC473443
0.7655 Intermediate Similarity NPC141455
0.7655 Intermediate Similarity NPC300894
0.7655 Intermediate Similarity NPC296954
0.7655 Intermediate Similarity NPC196063
0.7647 Intermediate Similarity NPC106677
0.7643 Intermediate Similarity NPC169398
0.7635 Intermediate Similarity NPC259347
0.7635 Intermediate Similarity NPC471062
0.7635 Intermediate Similarity NPC476398
0.7635 Intermediate Similarity NPC306890
0.7635 Intermediate Similarity NPC94871
0.7635 Intermediate Similarity NPC473427
0.7635 Intermediate Similarity NPC476386
0.7635 Intermediate Similarity NPC470933
0.7613 Intermediate Similarity NPC246024
0.7606 Intermediate Similarity NPC476376
0.7606 Intermediate Similarity NPC260425
0.76 Intermediate Similarity NPC469422
0.76 Intermediate Similarity NPC469398
0.7591 Intermediate Similarity NPC225307
0.7591 Intermediate Similarity NPC225103
0.7586 Intermediate Similarity NPC105005
0.7586 Intermediate Similarity NPC469367
0.7584 Intermediate Similarity NPC182350
0.7574 Intermediate Similarity NPC471157
0.7574 Intermediate Similarity NPC276047
0.7574 Intermediate Similarity NPC267733
0.7568 Intermediate Similarity NPC23677
0.7568 Intermediate Similarity NPC28776
0.7568 Intermediate Similarity NPC473138
0.7566 Intermediate Similarity NPC319404
0.7554 Intermediate Similarity NPC80599
0.7551 Intermediate Similarity NPC212808
0.7536 Intermediate Similarity NPC472388
0.7534 Intermediate Similarity NPC202391
0.7534 Intermediate Similarity NPC296659
0.7518 Intermediate Similarity NPC45224
0.7518 Intermediate Similarity NPC471882
0.7518 Intermediate Similarity NPC103533
0.7518 Intermediate Similarity NPC471881
0.7518 Intermediate Similarity NPC173150
0.7518 Intermediate Similarity NPC230331
0.7518 Intermediate Similarity NPC156692
0.7518 Intermediate Similarity NPC35288
0.7517 Intermediate Similarity NPC65833
0.7517 Intermediate Similarity NPC245219
0.7517 Intermediate Similarity NPC31081
0.75 Intermediate Similarity NPC232992
0.75 Intermediate Similarity NPC126991
0.75 Intermediate Similarity NPC470816

  Chemically structural similarity: II. Similar Clinical/Approved Drugs

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules.

●  The left chart: Distribution of similarity level between NPC471025 and all drugs/candidates.
●  The right table: Most similar clinical/approved drugs (Tc>=0.56 or Top200).

Similarity Score Similarity Level Drug ID Developmental Stage
0.7883 Intermediate Similarity NPD7966 Clinical (unspecified phase)
0.7676 Intermediate Similarity NPD7266 Discontinued
0.7386 Intermediate Similarity NPD8455 Phase 2
0.7315 Intermediate Similarity NPD8389 Clinical (unspecified phase)
0.7236 Intermediate Similarity NPD7798 Approved
0.7222 Intermediate Similarity NPD5048 Discontinued
0.7063 Intermediate Similarity NPD6647 Phase 2
0.7059 Intermediate Similarity NPD5125 Phase 3
0.7059 Intermediate Similarity NPD5126 Approved
0.7008 Intermediate Similarity NPD5909 Discontinued
0.6946 Remote Similarity NPD8313 Approved
0.6946 Remote Similarity NPD8312 Approved
0.6923 Remote Similarity NPD5952 Clinical (unspecified phase)
0.6894 Remote Similarity NPD969 Suspended
0.687 Remote Similarity NPD2067 Discontinued
0.6848 Remote Similarity NPD8470 Clinical (unspecified phase)
0.6848 Remote Similarity NPD7804 Clinical (unspecified phase)
0.6846 Remote Similarity NPD6686 Approved
0.6818 Remote Similarity NPD8413 Clinical (unspecified phase)
0.6813 Remote Similarity NPD4381 Clinical (unspecified phase)
0.6807 Remote Similarity NPD7472 Approved
0.6807 Remote Similarity NPD7074 Phase 3
0.6786 Remote Similarity NPD7808 Phase 3
0.6776 Remote Similarity NPD6190 Approved
0.6769 Remote Similarity NPD6685 Approved
0.6747 Remote Similarity NPD7054 Approved
0.6741 Remote Similarity NPD2629 Approved
0.6739 Remote Similarity NPD8516 Approved
0.6739 Remote Similarity NPD8517 Approved
0.6739 Remote Similarity NPD8515 Approved
0.6726 Remote Similarity NPD7251 Discontinued
0.6726 Remote Similarity NPD7685 Pre-registration
0.6713 Remote Similarity NPD6007 Clinical (unspecified phase)
0.6687 Remote Similarity NPD7228 Approved
0.6687 Remote Similarity NPD7799 Discontinued
0.6667 Remote Similarity NPD6797 Phase 2
0.6667 Remote Similarity NPD6010 Discontinued
0.6627 Remote Similarity NPD7240 Approved
0.6619 Remote Similarity NPD8513 Phase 3
0.6614 Remote Similarity NPD8029 Clinical (unspecified phase)
0.6601 Remote Similarity NPD4628 Phase 3
0.6599 Remote Similarity NPD6233 Phase 2
0.6571 Remote Similarity NPD7879 Clinical (unspecified phase)
0.6562 Remote Similarity NPD1238 Approved
0.6561 Remote Similarity NPD5403 Approved
0.656 Remote Similarity NPD5122 Clinical (unspecified phase)
0.6541 Remote Similarity NPD2182 Approved
0.6538 Remote Similarity NPD5765 Approved
0.6538 Remote Similarity NPD5738 Clinical (unspecified phase)
0.6538 Remote Similarity NPD5401 Approved
0.6533 Remote Similarity NPD4978 Clinical (unspecified phase)
0.6533 Remote Similarity NPD7097 Phase 1
0.6519 Remote Similarity NPD6912 Phase 3
0.6513 Remote Similarity NPD7702 Clinical (unspecified phase)
0.6484 Remote Similarity NPD9495 Approved
0.6479 Remote Similarity NPD1091 Approved
0.6474 Remote Similarity NPD6143 Clinical (unspecified phase)
0.6449 Remote Similarity NPD4198 Discontinued
0.6444 Remote Similarity NPD2181 Clinical (unspecified phase)
0.6438 Remote Similarity NPD4380 Phase 2
0.6434 Remote Similarity NPD2066 Phase 3
0.6433 Remote Similarity NPD6559 Discontinued
0.6433 Remote Similarity NPD8368 Discontinued
0.642 Remote Similarity NPD7096 Clinical (unspecified phase)
0.6419 Remote Similarity NPD6798 Discontinued
0.6419 Remote Similarity NPD6859 Clinical (unspecified phase)
0.6402 Remote Similarity NPD7075 Discontinued
0.6395 Remote Similarity NPD4338 Clinical (unspecified phase)
0.6387 Remote Similarity NPD8166 Discontinued
0.638 Remote Similarity NPD5402 Approved
0.6379 Remote Similarity NPD8055 Clinical (unspecified phase)
0.6377 Remote Similarity NPD690 Clinical (unspecified phase)
0.6375 Remote Similarity NPD7458 Discontinued
0.6374 Remote Similarity NPD7993 Clinical (unspecified phase)
0.6371 Remote Similarity NPD689 Discontinued
0.6364 Remote Similarity NPD1237 Approved
0.6359 Remote Similarity NPD8320 Phase 1
0.6359 Remote Similarity NPD8319 Approved
0.6358 Remote Similarity NPD37 Approved
0.6357 Remote Similarity NPD5926 Approved
0.6351 Remote Similarity NPD7008 Discontinued
0.635 Remote Similarity NPD8133 Approved
0.635 Remote Similarity NPD7094 Approved
0.635 Remote Similarity NPD6858 Approved
0.6341 Remote Similarity NPD4965 Approved
0.6341 Remote Similarity NPD4966 Approved
0.6341 Remote Similarity NPD4868 Clinical (unspecified phase)
0.6341 Remote Similarity NPD4967 Phase 2
0.6333 Remote Similarity NPD5120 Approved
0.6333 Remote Similarity NPD5121 Approved
0.6333 Remote Similarity NPD5119 Approved
0.6328 Remote Similarity NPD1989 Approved
0.6324 Remote Similarity NPD4141 Clinical (unspecified phase)
0.6322 Remote Similarity NPD8407 Phase 2
0.632 Remote Similarity NPD46 Approved
0.632 Remote Similarity NPD6698 Approved
0.6319 Remote Similarity NPD6637 Approved
0.6312 Remote Similarity NPD9545 Approved
0.6312 Remote Similarity NPD1653 Approved
0.6306 Remote Similarity NPD7236 Approved
0.6298 Remote Similarity NPD7700 Phase 2
0.6298 Remote Similarity NPD7699 Phase 2
0.6296 Remote Similarity NPD6831 Clinical (unspecified phase)
0.6294 Remote Similarity NPD4136 Approved
0.6294 Remote Similarity NPD3818 Discontinued
0.6294 Remote Similarity NPD7830 Approved
0.6294 Remote Similarity NPD7829 Approved
0.6294 Remote Similarity NPD4135 Approved
0.6294 Remote Similarity NPD4106 Approved
0.6291 Remote Similarity NPD1933 Approved
0.6291 Remote Similarity NPD6355 Discontinued
0.6288 Remote Similarity NPD1929 Approved
0.6288 Remote Similarity NPD1930 Approved
0.6288 Remote Similarity NPD1931 Clinical (unspecified phase)
0.6286 Remote Similarity NPD694 Clinical (unspecified phase)
0.6284 Remote Similarity NPD6832 Phase 2
0.6284 Remote Similarity NPD4617 Approved
0.6284 Remote Similarity NPD5203 Approved
0.6284 Remote Similarity NPD4620 Approved
0.6284 Remote Similarity NPD5201 Approved
0.6275 Remote Similarity NPD7033 Discontinued
0.6268 Remote Similarity NPD7503 Approved
0.6267 Remote Similarity NPD4062 Phase 3
0.6266 Remote Similarity NPD6799 Approved
0.6265 Remote Similarity NPD6234 Discontinued
0.6258 Remote Similarity NPD6801 Discontinued
0.625 Remote Similarity NPD8424 Clinical (unspecified phase)
0.625 Remote Similarity NPD4806 Approved
0.625 Remote Similarity NPD8150 Discontinued
0.625 Remote Similarity NPD4807 Approved
0.625 Remote Similarity NPD6980 Clinical (unspecified phase)
0.6242 Remote Similarity NPD7274 Clinical (unspecified phase)
0.6241 Remote Similarity NPD164 Approved
0.624 Remote Similarity NPD5346 Phase 2
0.624 Remote Similarity NPD5347 Phase 2
0.6233 Remote Similarity NPD5667 Approved
0.6224 Remote Similarity NPD5306 Approved
0.6224 Remote Similarity NPD5305 Approved
0.622 Remote Similarity NPD7819 Suspended
0.6218 Remote Similarity NPD7421 Clinical (unspecified phase)
0.6212 Remote Similarity NPD1932 Approved
0.6211 Remote Similarity NPD7239 Suspended
0.621 Remote Similarity NPD1282 Approved
0.621 Remote Similarity NPD4793 Discontinued
0.62 Remote Similarity NPD3764 Approved
0.6199 Remote Similarity NPD3751 Discontinued
0.6197 Remote Similarity NPD8294 Approved
0.6197 Remote Similarity NPD7741 Discontinued
0.6197 Remote Similarity NPD8377 Approved
0.6196 Remote Similarity NPD7411 Suspended
0.619 Remote Similarity NPD2628 Approved
0.619 Remote Similarity NPD2797 Approved
0.619 Remote Similarity NPD2160 Approved
0.619 Remote Similarity NPD7199 Phase 2
0.619 Remote Similarity NPD3673 Approved
0.619 Remote Similarity NPD8127 Discontinued
0.619 Remote Similarity NPD3672 Approved
0.619 Remote Similarity NPD2625 Approved
0.619 Remote Similarity NPD2627 Approved
0.619 Remote Similarity NPD2159 Approved
0.619 Remote Similarity NPD7838 Discovery
0.619 Remote Similarity NPD2626 Approved
0.6181 Remote Similarity NPD8328 Phase 3
0.618 Remote Similarity NPD8360 Approved
0.618 Remote Similarity NPD8435 Approved
0.618 Remote Similarity NPD8361 Approved
0.618 Remote Similarity NPD8397 Clinical (unspecified phase)
0.6178 Remote Similarity NPD2575 Approved
0.6178 Remote Similarity NPD1878 Clinical (unspecified phase)
0.6176 Remote Similarity NPD6168 Clinical (unspecified phase)
0.6176 Remote Similarity NPD6167 Clinical (unspecified phase)
0.6176 Remote Similarity NPD6166 Phase 2
0.6174 Remote Similarity NPD5202 Clinical (unspecified phase)
0.6174 Remote Similarity NPD2613 Approved
0.6173 Remote Similarity NPD6591 Clinical (unspecified phase)
0.6172 Remote Similarity NPD1202 Approved
0.6164 Remote Similarity NPD7876 Discontinued
0.6159 Remote Similarity NPD7715 Approved
0.6159 Remote Similarity NPD7961 Discontinued
0.6159 Remote Similarity NPD7714 Approved
0.6158 Remote Similarity NPD7782 Clinical (unspecified phase)
0.6158 Remote Similarity NPD7783 Phase 2
0.6154 Remote Similarity NPD8379 Approved
0.6154 Remote Similarity NPD8380 Approved
0.6154 Remote Similarity NPD8378 Approved
0.6154 Remote Similarity NPD8296 Approved
0.6154 Remote Similarity NPD3787 Discontinued
0.6154 Remote Similarity NPD4105 Approved
0.6154 Remote Similarity NPD4102 Approved
0.6154 Remote Similarity NPD8335 Approved
0.6143 Remote Similarity NPD5951 Approved
0.6138 Remote Similarity NPD6287 Discontinued
0.6138 Remote Similarity NPD8151 Discontinued
0.6135 Remote Similarity NPD8417 Discontinued
0.6133 Remote Similarity NPD6534 Approved
0.6133 Remote Similarity NPD6535 Approved
0.6129 Remote Similarity NPD7435 Discontinued
0.6127 Remote Similarity NPD2347 Approved
0.6125 Remote Similarity NPD7004 Clinical (unspecified phase)
0.6122 Remote Similarity NPD3225 Approved

  Bioactivity similarity: Similar Natural Products in NPASS

Bioactivity similarity was calculated based on bioactivity descriptors of compounds. The bioactivity descriptors were calculated by a recently developed AI algorithm Chemical Checker (CC) [Nature Biotechnology, 38:1087–1096, 2020; Nature Communications, 12:3932, 2021], which evaluated bioactivity similarities at five levels:
A: chemistry similarity;
B: biological targets similarity;
C: networks similarity;
D: cell-based bioactivity similarity;
E: similarity based on clinical data.

Those 5 categories of CC bioactivity descriptors were calculated and then subjected to manifold projection using UMAP algorithm, to project all NPs on a 2-Dimensional space. The current NP was highlighted with a small circle in the 2-D map. Below figures: left-to-right, A-to-E.

A: chemistry similarity
B: biological targets similarity
C: networks similarity
D: cell-based bioactivity similarity
E: similarity based on clinical data