Structure

Physi-Chem Properties

Molecular Weight:  2013.9
Volume:  1915.31
LogP:  1.416
LogD:  0.722
LogS:  -2.463
# Rotatable Bonds:  36
TPSA:  677.35
# H-Bond Aceptor:  45
# H-Bond Donor:  21
# Rings:  14
# Heavy Atoms:  45

MedChem Properties

QED Drug-Likeness Score:  0.011
Synthetic Accessibility Score:  8.6
Fsp3:  0.802
Lipinski Rule-of-5:  Rejected
Pfizer Rule:  Accepted
GSK Rule:  Rejected
BMS Rule:  1
Golden Triangle Rule:  Rejected
Chelating Alert:  0
PAINS Alert:  0

ADMET Properties (ADMETlab2.0)

ADMET: Absorption

Caco-2 Permeability:  -6.114
MDCK Permeability:  0.0009710540762171149
Pgp-inhibitor:  0.05
Pgp-substrate:  1.0
Human Intestinal Absorption (HIA):  1.0
20% Bioavailability (F20%):  0.002
30% Bioavailability (F30%):  1.0

ADMET: Distribution

Blood-Brain-Barrier Penetration (BBB):  0.366
Plasma Protein Binding (PPB):  42.879947662353516%
Volume Distribution (VD):  -0.546
Pgp-substrate:  19.171567916870117%

ADMET: Metabolism

CYP1A2-inhibitor:  0.0
CYP1A2-substrate:  0.008
CYP2C19-inhibitor:  0.0
CYP2C19-substrate:  0.043
CYP2C9-inhibitor:  0.0
CYP2C9-substrate:  0.0
CYP2D6-inhibitor:  0.003
CYP2D6-substrate:  0.006
CYP3A4-inhibitor:  0.12
CYP3A4-substrate:  0.004

ADMET: Excretion

Clearance (CL):  -1.789
Half-life (T1/2):  0.601

ADMET: Toxicity

hERG Blockers:  0.103
Human Hepatotoxicity (H-HT):  0.219
Drug-inuced Liver Injury (DILI):  0.152
AMES Toxicity:  0.043
Rat Oral Acute Toxicity:  0.012
Maximum Recommended Daily Dose:  0.983
Skin Sensitization:  0.04
Carcinogencity:  0.003
Eye Corrosion:  0.003
Eye Irritation:  0.002
Respiratory Toxicity:  0.359

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General Info & Identifiers & Properties  
Structure MOL file  
Source Organisms  
Biological Activities  
Similar NPs/Drugs  

  Natural Product: NPC475649

Natural Product ID:  NPC475649
Common Name*:   3Beta-O-{Alpha-L-Arabinopyranosyl-(1->3)-Alpha-L-Arabinopyranosyl-(1->6)-[Beta-D-Glucopyranosyl-(1->4)]-2-(Acetamido)-2-Deoxy-Beta-D-Glucopyranosyl}Echinocystic Acid 28-O-{Beta-D-Apiofuranosyl-(1->3)-Beta-D-Xylopyranosyl-(1->2)-[(2-Ocinnamoyl)-Beta-D-Xylopyranosyl-(1->4)]-(6-O-Acetyl)-Beta-D-Glucopyranosylester
IUPAC Name:   [(2S,3R,4S,5R,6R)-6-(acetyloxymethyl)-3-[(2S,3R,4S,5R)-4-[(2S,3R,4R)-3,4-dihydroxy-4-(hydroxymethyl)oxolan-2-yl]oxy-3,5-dihydroxyoxan-2-yl]oxy-5-hydroxy-4-[(2S,3R,4S,5R)-5-hydroxy-4-[(2E,6S)-6-hydroxy-2,6-dimethylocta-2,7-dienoyl]oxy-3-[(E)-3-phenylprop-2-enoyl]oxyoxan-2-yl]oxyoxan-2-yl] (3S,4aR,5R,6aR,6aS,6bR,8aR,10S,12aR,14bS)-10-[(2R,3R,4R,5S,6R)-3-acetamido-6-[[(2S,3R,4S,5S)-3,5-dihydroxy-4-[(2S,3R,4S,5S)-3,4,5-trihydroxyoxan-2-yl]oxyoxan-2-yl]oxymethyl]-4-hydroxy-5-[(2S,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxyoxan-2-yl]oxy-3,5-dihydroxy-2,2,6a,6b,9,9,12a-heptamethyl-1,3,4,5,6,6a,7,8,8a,10,11,12,13,14b-tetradecahydropicene-4a-carboxylate
Synonyms:  
Standard InCHIKey:  QGRBYADWKWKVRA-OYYMBGRASA-N
Standard InCHI:  InChI=1S/C96H143NO44/c1-13-91(9,121)27-17-18-42(2)79(119)135-73-51(105)37-127-85(76(73)134-60(108)24-21-45-19-15-14-16-20-45)139-75-64(111)53(38-123-44(4)101)131-86(77(75)140-83-70(117)72(50(104)36-126-83)137-87-78(118)95(122,40-99)41-129-87)141-88(120)96-32-57(106)89(5,6)30-47(96)46-22-23-56-92(10)28-26-59(90(7,8)55(92)25-29-93(56,11)94(46,12)31-58(96)107)133-80-61(97-43(3)100)65(112)74(138-84-68(115)66(113)63(110)52(33-98)130-84)54(132-80)39-128-81-69(116)71(49(103)35-124-81)136-82-67(114)62(109)48(102)34-125-82/h13-16,18-22,24,47-59,61-78,80-87,98-99,102-107,109-118,121-122H,1,17,23,25-41H2,2-12H3,(H,97,100)/b24-21+,42-18+/t47-,48-,49-,50+,51+,52+,53+,54+,55-,56+,57-,58+,59-,61+,62-,63+,64+,65+,66-,67+,68+,69+,70+,71-,72-,73-,74+,75-,76+,77+,78-,80-,81-,82-,83-,84-,85-,86-,87-,91+,92-,93+,94+,95+,96+/m0/s1
SMILES:  OC[C@H]1O[C@@H](O[C@@H]2[C@@H](CO[C@@H]3OC[C@@H]([C@@H]([C@H]3O)O[C@@H]3OC[C@@H]([C@@H]([C@H]3O)O)O)O)O[C@H]([C@@H]([C@H]2O)N=C(O)C)O[C@H]2CC[C@]3([C@H](C2(C)C)CC[C@@]2([C@@H]3CC=C3[C@@]2(C)C[C@H]([C@@]2([C@H]3CC(C)(C)[C@H](C2)O)C(=O)O[C@@H]2O[C@H](COC(=O)C)[C@H]([C@@H]([C@H]2O[C@@H]2OC[C@H]([C@@H]([C@H]2O)O[C@@H]2OC[C@]([C@H]2O)(O)CO)O)O[C@@H]2OC[C@H]([C@@H]([C@H]2OC(=O)/C=C/c2ccccc2)OC(=O)/C(=C/CC[C@@](C=C)(O)C)/C)O)O)O)C)C)[C@@H]([C@H]([C@@H]1O)O)O
Synthetic Gene Cluster:   n.a.
ChEMBL Identifier:   CHEMBL510401
PubChem CID:   44566576
Chemical Classification**:  
  • CHEMONTID:0000000 [Organic compounds]
    • [CHEMONTID:0000012] Lipids and lipid-like molecules
      • [CHEMONTID:0000259] Prenol lipids
        • [CHEMONTID:0002049] Terpene glycosides
          • [CHEMONTID:0001580] Triterpene glycosides
            • [CHEMONTID:0002358] Triterpene saponins

*Note: the InCHIKey will be temporarily assigned as the "Common Name" if no IUPAC name or alternative short name is available.
**Note: the Chemical Classification was calculated by NPClassifier Version 1.5. Reference: PMID:34662515.

  Species Source

Organism ID Organism Name Taxonomy Level Family SuperKingdom Isolation Part Collection Location Collection Time Reference
NPO11507 Entada africana Species Fabaceae Eukaryota n.a. n.a. n.a. PMID[16989528]
NPO11507 Entada africana Species Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]

☑ Note for Reference:
In addition to directly collecting NP source organism data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated them from below databases:
UNPD: Universal Natural Products Database [PMID: 23638153].
StreptomeDB: a database of streptomycetes natural products [PMID: 33051671].
TM-MC: a database of medicinal materials and chemical compounds in Northeast Asian traditional medicine [PMID: 26156871].
TCM@Taiwan: a Traditional Chinese Medicine database [PMID: 21253603].
TCMID: a Traditional Chinese Medicine database [PMID: 29106634].
TCMSP: The traditional Chinese medicine systems pharmacology database and analysis platform [PMID: 24735618].
HerDing: a herb recommendation system to treat diseases using genes and chemicals [PMID: 26980517].
MetaboLights: a metabolomics database [PMID: 27010336].
FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].

  NP Quantity Composition/Concentration

Organism ID NP ID Organism Material Preparation Organism Part NP Quantity (Standard) NP Quantity (Minimum) NP Quantity (Maximum) Quantity Unit Reference

☑ Note for Reference:
In addition to directly collecting NP quantitative data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated NP quantitative records for specific NP domains (e.g., NPS from foods or herbs) from domain-specific databases. These databases include:
DUKE: Dr. Duke's Phytochemical and Ethnobotanical Databases.
PHENOL EXPLORER: is the first comprehensive database on polyphenol content in foods [PMID: 24103452], its homepage can be accessed at here.
FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].

  Biological Activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference
NPT71 Cell Line HEK293 Homo sapiens IC50 = 2800.0 nM PMID[506727]
NPT1182 Cell Line J774.A1 Mus musculus IC50 = 3000.0 nM PMID[506727]
NPT3470 Cell Line WEHI-164 Mus musculus IC50 = 2700.0 nM PMID[506727]

☑ Note for Activity Records:
☉ The quantitative biological activities were primarily integrated from ChEMBL (Version-30) database and were also directly collected from PubMed literature. PubMed PMID was provided as the reference link for each activity record.

  Chemically structural similarity: I. Similar Active Natural Products in NPASS

Top-200 similar NPs were calculated against the active-NP-set (includes 4,3285 NPs with experimentally-derived bioactivity available in NPASS)

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules. Tc lies between [0, 1] where '1' indicates the highest similarity. What is Tanimoto coefficient

●  The left chart: Distribution of similarity level between NPC475649 and all remaining natural products in the NPASS database.
●  The right table: Most similar natural products (Tc>=0.56 or Top200).

Similarity Score Similarity Level Natural Product ID
0.9938 High Similarity NPC475345
0.9693 High Similarity NPC476113
0.963 High Similarity NPC120667
0.963 High Similarity NPC278272
0.8642 High Similarity NPC100612
0.8642 High Similarity NPC174336
0.8642 High Similarity NPC475599
0.8642 High Similarity NPC187497
0.8642 High Similarity NPC113620
0.858 High Similarity NPC265699
0.858 High Similarity NPC475527
0.8395 Intermediate Similarity NPC264270
0.8395 Intermediate Similarity NPC40085
0.8333 Intermediate Similarity NPC111466
0.8284 Intermediate Similarity NPC477467
0.8225 Intermediate Similarity NPC477470
0.8225 Intermediate Similarity NPC477474
0.8225 Intermediate Similarity NPC477472
0.8086 Intermediate Similarity NPC475892
0.8047 Intermediate Similarity NPC69425
0.8025 Intermediate Similarity NPC475394
0.8025 Intermediate Similarity NPC475584
0.8025 Intermediate Similarity NPC475152
0.7988 Intermediate Similarity NPC473755
0.7988 Intermediate Similarity NPC475513
0.7937 Intermediate Similarity NPC472375
0.7929 Intermediate Similarity NPC329657
0.7901 Intermediate Similarity NPC210729
0.7901 Intermediate Similarity NPC82931
0.7901 Intermediate Similarity NPC172365
0.7865 Intermediate Similarity NPC477471
0.7865 Intermediate Similarity NPC477469
0.7865 Intermediate Similarity NPC477466
0.7865 Intermediate Similarity NPC477473
0.7842 Intermediate Similarity NPC472392
0.7812 Intermediate Similarity NPC289383
0.7801 Intermediate Similarity NPC472391
0.779 Intermediate Similarity NPC13989
0.7784 Intermediate Similarity NPC150893
0.7784 Intermediate Similarity NPC329960
0.7784 Intermediate Similarity NPC295408
0.7778 Intermediate Similarity NPC200788
0.7778 Intermediate Similarity NPC243680
0.7772 Intermediate Similarity NPC116862
0.7725 Intermediate Similarity NPC61717
0.7725 Intermediate Similarity NPC244380
0.7684 Intermediate Similarity NPC473641
0.7684 Intermediate Similarity NPC473797
0.7684 Intermediate Similarity NPC475505
0.7684 Intermediate Similarity NPC475437
0.7684 Intermediate Similarity NPC475300
0.7684 Intermediate Similarity NPC475464
0.7654 Intermediate Similarity NPC145899
0.7627 Intermediate Similarity NPC475536
0.7627 Intermediate Similarity NPC165234
0.7605 Intermediate Similarity NPC214821
0.7605 Intermediate Similarity NPC298067
0.7593 Intermediate Similarity NPC280941
0.7593 Intermediate Similarity NPC75318
0.7593 Intermediate Similarity NPC235772
0.7574 Intermediate Similarity NPC237240
0.7574 Intermediate Similarity NPC31171
0.7558 Intermediate Similarity NPC476092
0.7558 Intermediate Similarity NPC475218
0.7558 Intermediate Similarity NPC475447
0.7558 Intermediate Similarity NPC70236
0.7557 Intermediate Similarity NPC476784
0.7556 Intermediate Similarity NPC475175
0.7556 Intermediate Similarity NPC475198
0.7556 Intermediate Similarity NPC475531
0.7531 Intermediate Similarity NPC76999
0.7529 Intermediate Similarity NPC36463
0.7529 Intermediate Similarity NPC298005
0.7514 Intermediate Similarity NPC102465
0.7514 Intermediate Similarity NPC469420
0.7513 Intermediate Similarity NPC471754
0.7513 Intermediate Similarity NPC317882
0.75 Intermediate Similarity NPC474564
0.75 Intermediate Similarity NPC473557
0.75 Intermediate Similarity NPC475567
0.75 Intermediate Similarity NPC473468
0.7469 Intermediate Similarity NPC119794
0.7469 Intermediate Similarity NPC73829
0.7461 Intermediate Similarity NPC473558
0.7461 Intermediate Similarity NPC473490
0.746 Intermediate Similarity NPC471623
0.7457 Intermediate Similarity NPC472761
0.7448 Intermediate Similarity NPC215892
0.7448 Intermediate Similarity NPC242662
0.7448 Intermediate Similarity NPC191193
0.7448 Intermediate Similarity NPC321072
0.7442 Intermediate Similarity NPC201692
0.744 Intermediate Similarity NPC141669
0.744 Intermediate Similarity NPC111586
0.744 Intermediate Similarity NPC298469
0.744 Intermediate Similarity NPC108852
0.744 Intermediate Similarity NPC261709
0.744 Intermediate Similarity NPC193579
0.7421 Intermediate Similarity NPC475336
0.7421 Intermediate Similarity NPC324251
0.7421 Intermediate Similarity NPC471629
0.7421 Intermediate Similarity NPC275170
0.7421 Intermediate Similarity NPC306001
0.7421 Intermediate Similarity NPC453583
0.7421 Intermediate Similarity NPC473400
0.7421 Intermediate Similarity NPC206211
0.7421 Intermediate Similarity NPC473300
0.7416 Intermediate Similarity NPC477623
0.7409 Intermediate Similarity NPC181964
0.7409 Intermediate Similarity NPC208553
0.7409 Intermediate Similarity NPC471606
0.7407 Intermediate Similarity NPC473679
0.7407 Intermediate Similarity NPC319719
0.7407 Intermediate Similarity NPC183816
0.7407 Intermediate Similarity NPC233223
0.7407 Intermediate Similarity NPC322904
0.7407 Intermediate Similarity NPC196874
0.7407 Intermediate Similarity NPC327699
0.7407 Intermediate Similarity NPC475472
0.7407 Intermediate Similarity NPC475444
0.7407 Intermediate Similarity NPC475177
0.7407 Intermediate Similarity NPC324933
0.7401 Intermediate Similarity NPC469417
0.7382 Intermediate Similarity NPC67246
0.7382 Intermediate Similarity NPC33372
0.7377 Intermediate Similarity NPC477488
0.7371 Intermediate Similarity NPC477905
0.7371 Intermediate Similarity NPC472548
0.7366 Intermediate Similarity NPC124828
0.7362 Intermediate Similarity NPC471024
0.736 Intermediate Similarity NPC477736
0.736 Intermediate Similarity NPC469399
0.7356 Intermediate Similarity NPC469448
0.7351 Intermediate Similarity NPC469421
0.7346 Intermediate Similarity NPC10121
0.7346 Intermediate Similarity NPC300655
0.7346 Intermediate Similarity NPC311178
0.7346 Intermediate Similarity NPC231888
0.7346 Intermediate Similarity NPC63404
0.7346 Intermediate Similarity NPC92283
0.7346 Intermediate Similarity NPC222951
0.7346 Intermediate Similarity NPC290276
0.7346 Intermediate Similarity NPC10883
0.7346 Intermediate Similarity NPC35338
0.7346 Intermediate Similarity NPC43589
0.7346 Intermediate Similarity NPC198918
0.7346 Intermediate Similarity NPC204214
0.7346 Intermediate Similarity NPC124878
0.733 Intermediate Similarity NPC472658
0.733 Intermediate Similarity NPC472657
0.7326 Intermediate Similarity NPC173934
0.7323 Intermediate Similarity NPC314941
0.7321 Intermediate Similarity NPC162910
0.7312 Intermediate Similarity NPC469774
0.7312 Intermediate Similarity NPC469778
0.7312 Intermediate Similarity NPC469776
0.7312 Intermediate Similarity NPC135334
0.7312 Intermediate Similarity NPC100925
0.7312 Intermediate Similarity NPC469777
0.7312 Intermediate Similarity NPC295941
0.7312 Intermediate Similarity NPC32723
0.7312 Intermediate Similarity NPC469775
0.7312 Intermediate Similarity NPC469773
0.7312 Intermediate Similarity NPC469772
0.7305 Intermediate Similarity NPC302276
0.7303 Intermediate Similarity NPC477735
0.7301 Intermediate Similarity NPC471025
0.7301 Intermediate Similarity NPC230331
0.73 Intermediate Similarity NPC315889
0.7299 Intermediate Similarity NPC470274
0.7288 Intermediate Similarity NPC5115
0.7288 Intermediate Similarity NPC469398
0.7288 Intermediate Similarity NPC472549
0.7284 Intermediate Similarity NPC77651
0.7284 Intermediate Similarity NPC28069
0.7257 Intermediate Similarity NPC475417
0.7257 Intermediate Similarity NPC475561
0.7239 Intermediate Similarity NPC190849
0.7239 Intermediate Similarity NPC147032
0.7239 Intermediate Similarity NPC171007
0.7232 Intermediate Similarity NPC469477
0.7232 Intermediate Similarity NPC133430
0.7229 Intermediate Similarity NPC209851
0.7225 Intermediate Similarity NPC301946
0.7225 Intermediate Similarity NPC277053
0.7222 Intermediate Similarity NPC112492
0.7222 Intermediate Similarity NPC162925
0.7222 Intermediate Similarity NPC472268
0.7222 Intermediate Similarity NPC87153
0.7222 Intermediate Similarity NPC472269
0.7222 Intermediate Similarity NPC45606
0.7222 Intermediate Similarity NPC472270
0.7222 Intermediate Similarity NPC23020
0.7222 Intermediate Similarity NPC220838
0.7216 Intermediate Similarity NPC470153
0.7213 Intermediate Similarity NPC477491
0.7209 Intermediate Similarity NPC262216
0.7206 Intermediate Similarity NPC315253
0.7204 Intermediate Similarity NPC471870
0.7202 Intermediate Similarity NPC180770

  Chemically structural similarity: II. Similar Clinical/Approved Drugs

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules.

●  The left chart: Distribution of similarity level between NPC475649 and all drugs/candidates.
●  The right table: Most similar clinical/approved drugs (Tc>=0.56 or Top200).

Similarity Score Similarity Level Drug ID Developmental Stage
0.7778 Intermediate Similarity NPD8470 Clinical (unspecified phase)
0.7717 Intermediate Similarity NPD8407 Phase 2
0.7574 Intermediate Similarity NPD7274 Clinical (unspecified phase)
0.7565 Intermediate Similarity NPD8486 Clinical (unspecified phase)
0.7554 Intermediate Similarity NPD8368 Discontinued
0.7553 Intermediate Similarity NPD8360 Approved
0.7553 Intermediate Similarity NPD8361 Approved
0.746 Intermediate Similarity NPD8435 Approved
0.7409 Intermediate Similarity NPD8485 Approved
0.7354 Intermediate Similarity NPD8424 Clinical (unspecified phase)
0.7323 Intermediate Similarity NPD8320 Phase 1
0.7323 Intermediate Similarity NPD8319 Approved
0.7241 Intermediate Similarity NPD8389 Clinical (unspecified phase)
0.7071 Intermediate Similarity NPD7237 Clinical (unspecified phase)
0.7059 Intermediate Similarity NPD7875 Clinical (unspecified phase)
0.7059 Intermediate Similarity NPD7874 Approved
0.7024 Intermediate Similarity NPD7783 Phase 2
0.7024 Intermediate Similarity NPD7782 Clinical (unspecified phase)
0.7024 Intermediate Similarity NPD7801 Approved
0.702 Intermediate Similarity NPD7700 Phase 2
0.702 Intermediate Similarity NPD7699 Phase 2
0.7019 Intermediate Similarity NPD8404 Phase 2
0.701 Intermediate Similarity NPD8151 Discontinued
0.6982 Remote Similarity NPD7966 Clinical (unspecified phase)
0.6968 Remote Similarity NPD7799 Discontinued
0.6881 Remote Similarity NPD6823 Phase 2
0.6878 Remote Similarity NPD7701 Phase 2
0.6869 Remote Similarity NPD6534 Approved
0.6869 Remote Similarity NPD6535 Approved
0.6847 Remote Similarity NPD7697 Approved
0.6847 Remote Similarity NPD7698 Approved
0.6847 Remote Similarity NPD7696 Phase 3
0.6814 Remote Similarity NPD7870 Phase 2
0.6814 Remote Similarity NPD7871 Phase 2
0.6753 Remote Similarity NPD8312 Approved
0.6753 Remote Similarity NPD8313 Approved
0.6746 Remote Similarity NPD8462 Phase 1
0.67 Remote Similarity NPD6780 Approved
0.67 Remote Similarity NPD6781 Approved
0.67 Remote Similarity NPD6782 Approved
0.67 Remote Similarity NPD6776 Approved
0.67 Remote Similarity NPD6778 Approved
0.67 Remote Similarity NPD6779 Approved
0.67 Remote Similarity NPD6777 Approved
0.6667 Remote Similarity NPD8417 Discontinued
0.6651 Remote Similarity NPD8155 Clinical (unspecified phase)
0.665 Remote Similarity NPD6213 Phase 3
0.665 Remote Similarity NPD6212 Phase 3
0.665 Remote Similarity NPD6214 Clinical (unspecified phase)
0.6629 Remote Similarity NPD2575 Approved
0.6604 Remote Similarity NPD7930 Approved
0.6575 Remote Similarity NPD8058 Clinical (unspecified phase)
0.6575 Remote Similarity NPD8059 Phase 3
0.6566 Remote Similarity NPD8150 Discontinued
0.6545 Remote Similarity NPD8515 Approved
0.6545 Remote Similarity NPD8517 Approved
0.6545 Remote Similarity NPD8516 Approved
0.6538 Remote Similarity NPD7999 Approved
0.6522 Remote Similarity NPD7497 Discontinued
0.6522 Remote Similarity NPD7435 Discontinued
0.6514 Remote Similarity NPD5619 Clinical (unspecified phase)
0.6459 Remote Similarity NPD7211 Clinical (unspecified phase)
0.6453 Remote Similarity NPD2613 Approved
0.645 Remote Similarity NPD8074 Phase 3
0.6446 Remote Similarity NPD8513 Phase 3
0.6443 Remote Similarity NPD7228 Approved
0.6437 Remote Similarity NPD3090 Approved
0.6437 Remote Similarity NPD3614 Approved
0.6437 Remote Similarity NPD3616 Approved
0.6437 Remote Similarity NPD3088 Approved
0.6437 Remote Similarity NPD3087 Approved
0.6437 Remote Similarity NPD2573 Approved
0.6437 Remote Similarity NPD2566 Approved
0.6437 Remote Similarity NPD2572 Clinical (unspecified phase)
0.6437 Remote Similarity NPD2570 Approved
0.6437 Remote Similarity NPD3615 Approved
0.6437 Remote Similarity NPD3089 Approved
0.6437 Remote Similarity NPD2574 Discontinued
0.6437 Remote Similarity NPD4745 Approved
0.6437 Remote Similarity NPD4746 Phase 3
0.6437 Remote Similarity NPD2571 Approved
0.6436 Remote Similarity NPD7879 Clinical (unspecified phase)
0.6409 Remote Similarity NPD8323 Discontinued
0.6383 Remote Similarity NPD8455 Phase 2
0.6369 Remote Similarity NPD8328 Phase 3
0.6364 Remote Similarity NPD4685 Phase 3
0.6364 Remote Similarity NPD4684 Phase 3
0.6364 Remote Similarity NPD4686 Approved
0.6364 Remote Similarity NPD8658 Clinical (unspecified phase)
0.6364 Remote Similarity NPD7749 Clinical (unspecified phase)
0.6364 Remote Similarity NPD8468 Phase 2
0.6355 Remote Similarity NPD7827 Phase 1
0.6354 Remote Similarity NPD8166 Discontinued
0.635 Remote Similarity NPD5036 Approved
0.6344 Remote Similarity NPD6591 Clinical (unspecified phase)
0.6343 Remote Similarity NPD7715 Approved
0.6343 Remote Similarity NPD7714 Approved
0.6337 Remote Similarity NPD8392 Approved
0.6337 Remote Similarity NPD8391 Approved
0.6337 Remote Similarity NPD8390 Approved
0.6329 Remote Similarity NPD7565 Approved
0.6322 Remote Similarity NPD5952 Clinical (unspecified phase)
0.6321 Remote Similarity NPD7315 Approved
0.6318 Remote Similarity NPD8434 Phase 2
0.6318 Remote Similarity NPD5038 Approved
0.6318 Remote Similarity NPD5037 Approved
0.6313 Remote Similarity NPD7240 Approved
0.6292 Remote Similarity NPD6852 Discontinued
0.629 Remote Similarity NPD7239 Suspended
0.6284 Remote Similarity NPD7236 Approved
0.6278 Remote Similarity NPD7702 Clinical (unspecified phase)
0.6269 Remote Similarity NPD8055 Clinical (unspecified phase)
0.6257 Remote Similarity NPD8448 Approved
0.625 Remote Similarity NPD5035 Approved
0.625 Remote Similarity NPD8285 Discontinued
0.625 Remote Similarity NPD5981 Approved
0.6231 Remote Similarity NPD5030 Phase 2
0.6215 Remote Similarity NPD5119 Approved
0.6215 Remote Similarity NPD5121 Approved
0.6215 Remote Similarity NPD5120 Approved
0.6205 Remote Similarity NPD8051 Clinical (unspecified phase)
0.6202 Remote Similarity NPD4420 Approved
0.62 Remote Similarity NPD4954 Approved
0.62 Remote Similarity NPD4955 Approved
0.62 Remote Similarity NPD5028 Approved
0.62 Remote Similarity NPD36 Approved
0.62 Remote Similarity NPD5034 Approved
0.62 Remote Similarity NPD5026 Approved
0.6199 Remote Similarity NPD8451 Approved
0.6195 Remote Similarity NPD7296 Approved
0.6188 Remote Similarity NPD7266 Discontinued
0.6186 Remote Similarity NPD8127 Discontinued
0.6176 Remote Similarity NPD6836 Approved
0.6176 Remote Similarity NPD8397 Clinical (unspecified phase)
0.6175 Remote Similarity NPD3400 Discontinued
0.6175 Remote Similarity NPD7625 Phase 1
0.6173 Remote Similarity NPD7997 Clinical (unspecified phase)
0.6161 Remote Similarity NPD5005 Approved
0.6161 Remote Similarity NPD5006 Approved
0.6158 Remote Similarity NPD7961 Discontinued
0.6158 Remote Similarity NPD37 Approved
0.6146 Remote Similarity NPD4965 Approved
0.6146 Remote Similarity NPD4967 Phase 2
0.6146 Remote Similarity NPD4966 Approved
0.614 Remote Similarity NPD8340 Approved
0.614 Remote Similarity NPD3131 Approved
0.614 Remote Similarity NPD3132 Approved
0.614 Remote Similarity NPD4218 Approved
0.614 Remote Similarity NPD4217 Approved
0.614 Remote Similarity NPD4216 Approved
0.614 Remote Similarity NPD8299 Approved
0.614 Remote Similarity NPD8342 Approved
0.614 Remote Similarity NPD2612 Approved
0.614 Remote Similarity NPD8341 Approved
0.614 Remote Similarity NPD2610 Approved
0.614 Remote Similarity NPD4215 Approved
0.614 Remote Similarity NPD2609 Approved
0.614 Remote Similarity NPD2611 Approved
0.614 Remote Similarity NPD2608 Approved
0.6139 Remote Similarity NPD7090 Clinical (unspecified phase)
0.6136 Remote Similarity NPD4738 Phase 2
0.6126 Remote Similarity NPD7972 Discontinued
0.6121 Remote Similarity NPD8133 Approved
0.6119 Remote Similarity NPD5032 Approved
0.6114 Remote Similarity NPD2494 Approved
0.6114 Remote Similarity NPD2493 Approved
0.6114 Remote Similarity NPD7975 Clinical (unspecified phase)
0.6111 Remote Similarity NPD2567 Approved
0.6111 Remote Similarity NPD2569 Approved
0.6103 Remote Similarity NPD4582 Approved
0.6103 Remote Similarity NPD4583 Approved
0.6102 Remote Similarity NPD4621 Approved
0.6102 Remote Similarity NPD4619 Approved
0.6095 Remote Similarity NPD8294 Approved
0.6095 Remote Similarity NPD8377 Approved
0.6092 Remote Similarity NPD7319 Approved
0.6087 Remote Similarity NPD7488 Clinical (unspecified phase)
0.6085 Remote Similarity NPD7458 Discontinued
0.6082 Remote Similarity NPD7830 Approved
0.6082 Remote Similarity NPD7829 Approved
0.6082 Remote Similarity NPD6234 Discontinued
0.608 Remote Similarity NPD4620 Approved
0.608 Remote Similarity NPD4617 Approved
0.608 Remote Similarity NPD5201 Approved
0.608 Remote Similarity NPD5202 Clinical (unspecified phase)
0.608 Remote Similarity NPD5203 Approved
0.6077 Remote Similarity NPD2975 Approved
0.6077 Remote Similarity NPD2973 Approved
0.6077 Remote Similarity NPD2974 Approved
0.6077 Remote Similarity NPD7282 Approved
0.607 Remote Similarity NPD5029 Approved
0.607 Remote Similarity NPD5027 Approved
0.607 Remote Similarity NPD5031 Approved
0.6066 Remote Similarity NPD4580 Approved
0.6059 Remote Similarity NPD8378 Approved
0.6059 Remote Similarity NPD8380 Approved
0.6059 Remote Similarity NPD8335 Approved
0.6059 Remote Similarity NPD7503 Approved
0.6059 Remote Similarity NPD8379 Approved
0.6059 Remote Similarity NPD8296 Approved

  Bioactivity similarity: Similar Natural Products in NPASS

Bioactivity similarity was calculated based on bioactivity descriptors of compounds. The bioactivity descriptors were calculated by a recently developed AI algorithm Chemical Checker (CC) [Nature Biotechnology, 38:1087–1096, 2020; Nature Communications, 12:3932, 2021], which evaluated bioactivity similarities at five levels:
A: chemistry similarity;
B: biological targets similarity;
C: networks similarity;
D: cell-based bioactivity similarity;
E: similarity based on clinical data.

Those 5 categories of CC bioactivity descriptors were calculated and then subjected to manifold projection using UMAP algorithm, to project all NPs on a 2-Dimensional space. The current NP was highlighted with a small circle in the 2-D map. Below figures: left-to-right, A-to-E.

A: chemistry similarity
B: biological targets similarity
C: networks similarity
D: cell-based bioactivity similarity
E: similarity based on clinical data