Structure

Physi-Chem Properties

Molecular Weight:  2155.02
Volume:  2053.796
LogP:  2.482
LogD:  1.165
LogS:  -2.519
# Rotatable Bonds:  37
TPSA:  741.56
# H-Bond Aceptor:  48
# H-Bond Donor:  25
# Rings:  14
# Heavy Atoms:  48

MedChem Properties

QED Drug-Likeness Score:  0.012
Synthetic Accessibility Score:  8.834
Fsp3:  0.873
Lipinski Rule-of-5:  Rejected
Pfizer Rule:  Accepted
GSK Rule:  Rejected
BMS Rule:  1
Golden Triangle Rule:  Rejected
Chelating Alert:  0
PAINS Alert:  0

ADMET Properties (ADMETlab2.0)

ADMET: Absorption

Caco-2 Permeability:  -6.573
MDCK Permeability:  0.007239074446260929
Pgp-inhibitor:  0.023
Pgp-substrate:  1.0
Human Intestinal Absorption (HIA):  1.0
20% Bioavailability (F20%):  0.0
30% Bioavailability (F30%):  1.0

ADMET: Distribution

Blood-Brain-Barrier Penetration (BBB):  0.351
Plasma Protein Binding (PPB):  46.34135818481445%
Volume Distribution (VD):  -0.83
Pgp-substrate:  20.70615005493164%

ADMET: Metabolism

CYP1A2-inhibitor:  0.0
CYP1A2-substrate:  0.063
CYP2C19-inhibitor:  0.0
CYP2C19-substrate:  0.051
CYP2C9-inhibitor:  0.0
CYP2C9-substrate:  0.0
CYP2D6-inhibitor:  0.0
CYP2D6-substrate:  0.006
CYP3A4-inhibitor:  0.104
CYP3A4-substrate:  0.0

ADMET: Excretion

Clearance (CL):  -2.505
Half-life (T1/2):  0.718

ADMET: Toxicity

hERG Blockers:  0.118
Human Hepatotoxicity (H-HT):  0.083
Drug-inuced Liver Injury (DILI):  0.013
AMES Toxicity:  0.023
Rat Oral Acute Toxicity:  0.021
Maximum Recommended Daily Dose:  0.527
Skin Sensitization:  0.042
Carcinogencity:  0.005
Eye Corrosion:  0.003
Eye Irritation:  0.003
Respiratory Toxicity:  0.134

Download Data

Data Type Select
General Info & Identifiers & Properties  
Structure MOL file  
Source Organisms  
Biological Activities  
Similar NPs/Drugs  

  Natural Product: NPC311178

Natural Product ID:  NPC311178
Common Name*:   Julibroside Ii
IUPAC Name:   [(2S,3R,4S,5S,6R)-3-[(2S,3R,4S,5S,6S)-5-[(2S,3R,4R,5S)-3,4-dihydroxy-5-(hydroxymethyl)oxolan-2-yl]oxy-3-hydroxy-6-methyl-4-[(2S,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxyoxan-2-yl]oxy-4,5-dihydroxy-6-(hydroxymethyl)oxan-2-yl] (3S,4aR,5R,6aR,6aS,6bR,8aR,10S,12aR,14bS)-10-[(2R,3R,4S,5S,6R)-6-[[(2R,3R,4S,5R,6R)-4,5-dihydroxy-6-methyl-3-[(2S,3R,4S,5R)-3,4,5-trihydroxyoxan-2-yl]oxyoxan-2-yl]oxymethyl]-3,4,5-trihydroxyoxan-2-yl]oxy-3-[(2E,6S)-6-[(2S,3R,4R,5S,6R)-5-[(2E,6S)-2,6-dimethyl-6-[(2S,3R,4S,5S,6R)-3,4,5-trihydroxy-6-methyloxan-2-yl]oxyocta-2,7-dienoyl]oxy-3,4-dihydroxy-6-methyloxan-2-yl]oxy-2,6-dimethylocta-2,7-dienoyl]oxy-5-hydroxy-2,2,6a,6b,9,9,12a-heptamethyl-1,3,4,5,6,6a,7,8,8a,10,11,12,13,14b-tetradecahydropicene-4a-carboxylate
Synonyms:   Julibroside II
Standard InCHIKey:  LKBSJWFTPPMQGM-PCIKECTOSA-N
Standard InCHI:  InChI=1S/C102H162O48/c1-18-97(13,149-90-75(125)65(115)58(108)42(5)133-90)29-21-23-41(4)84(129)143-78-44(7)136-91(76(126)70(78)120)150-98(14,19-2)28-20-22-40(3)83(128)141-57-34-102(94(130)148-93-82(69(119)62(112)50(36-104)139-93)147-89-77(127)80(145-88-74(124)66(116)61(111)49(35-103)137-88)79(45(8)135-89)144-87-72(122)63(113)51(37-105)138-87)47(32-95(57,9)10)46-24-25-54-99(15)30-27-56(96(11,12)53(99)26-31-100(54,16)101(46,17)33-55(102)107)142-86-73(123)67(117)64(114)52(140-86)39-132-92-81(68(118)59(109)43(6)134-92)146-85-71(121)60(110)48(106)38-131-85/h18-19,22-24,42-45,47-82,85-93,103-127H,1-2,20-21,25-39H2,3-17H3/b40-22+,41-23+/t42-,43-,44-,45+,47+,48-,49-,50-,51+,52-,53+,54-,55-,56+,57+,58-,59+,60+,61-,62-,63+,64-,65+,66+,67+,68+,69+,70-,71-,72-,73-,74-,75-,76-,77-,78-,79+,80+,81-,82-,85+,86+,87+,88+,89+,90+,91+,92-,93+,97-,98-,99+,100-,101-,102-/m1/s1
SMILES:  OC[C@H]1O[C@@H](OC(=O)[C@@]23C[C@H](OC(=O)/C(=C/CC[C@](O[C@@H]4O[C@H](C)[C@H]([C@@H]([C@H]4O)O)OC(=O)/C(=C/CC[C@](O[C@@H]4O[C@H](C)[C@H]([C@@H]([C@H]4O)O)O)(C=C)C)/C)(C=C)C)/C)C(C[C@H]3C3=CC[C@H]4[C@@]([C@@]3(C[C@H]2O)C)(C)CC[C@@H]2[C@]4(C)CC[C@@H](C2(C)C)O[C@@H]2O[C@H](CO[C@@H]3O[C@H](C)[C@@H]([C@@H]([C@H]3O[C@@H]3OC[C@H]([C@@H]([C@H]3O)O)O)O)O)[C@H]([C@@H]([C@H]2O)O)O)(C)C)[C@@H]([C@H]([C@@H]1O)O)O[C@@H]1O[C@@H](C)[C@@H]([C@H]([C@H]1O)O[C@@H]1O[C@H](CO)[C@H]([C@@H]([C@H]1O)O)O)O[C@@H]1O[C@H]([C@@H]([C@H]1O)O)CO
Synthetic Gene Cluster:   n.a.
ChEMBL Identifier:   CHEMBL504272
PubChem CID:   21638099
Chemical Classification**:  
  • CHEMONTID:0000000 [Organic compounds]
    • [CHEMONTID:0000012] Lipids and lipid-like molecules
      • [CHEMONTID:0000259] Prenol lipids
        • [CHEMONTID:0002049] Terpene glycosides
          • [CHEMONTID:0001580] Triterpene glycosides
            • [CHEMONTID:0002358] Triterpene saponins

*Note: the InCHIKey will be temporarily assigned as the "Common Name" if no IUPAC name or alternative short name is available.
**Note: the Chemical Classification was calculated by NPClassifier Version 1.5. Reference: PMID:34662515.

  Species Source

Organism ID Organism Name Taxonomy Level Family SuperKingdom Isolation Part Collection Location Collection Time Reference
NPO12181 Albizia julibrissin Species Fabaceae Eukaryota n.a. bark n.a. PMID[15283458]
NPO12181 Albizia julibrissin Species Fabaceae Eukaryota n.a. stem n.a. PMID[15577257]
NPO12181 Albizia julibrissin Species Fabaceae Eukaryota n.a. n.a. n.a. PMID[9051910]
NPO12181 Albizia julibrissin Species Fabaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO12181 Albizia julibrissin Species Fabaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO12181 Albizia julibrissin Species Fabaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO12181 Albizia julibrissin Species Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]

☑ Note for Reference:
In addition to directly collecting NP source organism data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated them from below databases:
UNPD: Universal Natural Products Database [PMID: 23638153].
StreptomeDB: a database of streptomycetes natural products [PMID: 33051671].
TM-MC: a database of medicinal materials and chemical compounds in Northeast Asian traditional medicine [PMID: 26156871].
TCM@Taiwan: a Traditional Chinese Medicine database [PMID: 21253603].
TCMID: a Traditional Chinese Medicine database [PMID: 29106634].
TCMSP: The traditional Chinese medicine systems pharmacology database and analysis platform [PMID: 24735618].
HerDing: a herb recommendation system to treat diseases using genes and chemicals [PMID: 26980517].
MetaboLights: a metabolomics database [PMID: 27010336].
FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].

  NP Quantity Composition/Concentration

Organism ID NP ID Organism Material Preparation Organism Part NP Quantity (Standard) NP Quantity (Minimum) NP Quantity (Maximum) Quantity Unit Reference

☑ Note for Reference:
In addition to directly collecting NP quantitative data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated NP quantitative records for specific NP domains (e.g., NPS from foods or herbs) from domain-specific databases. These databases include:
DUKE: Dr. Duke's Phytochemical and Ethnobotanical Databases.
PHENOL EXPLORER: is the first comprehensive database on polyphenol content in foods [PMID: 24103452], its homepage can be accessed at here.
FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].

  Biological Activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference
NPT91 Cell Line KB Homo sapiens IC50 > 10.0 ug.mL-1 PMID[528385]

☑ Note for Activity Records:
☉ The quantitative biological activities were primarily integrated from ChEMBL (Version-30) database and were also directly collected from PubMed literature. PubMed PMID was provided as the reference link for each activity record.

  Chemically structural similarity: I. Similar Active Natural Products in NPASS

Top-200 similar NPs were calculated against the active-NP-set (includes 4,3285 NPs with experimentally-derived bioactivity available in NPASS)

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules. Tc lies between [0, 1] where '1' indicates the highest similarity. What is Tanimoto coefficient

●  The left chart: Distribution of similarity level between NPC311178 and all remaining natural products in the NPASS database.
●  The right table: Most similar natural products (Tc>=0.56 or Top200).

Similarity Score Similarity Level Natural Product ID
1.0 High Similarity NPC300655
1.0 High Similarity NPC222951
1.0 High Similarity NPC43589
0.9917 High Similarity NPC196874
0.9917 High Similarity NPC183816
0.9917 High Similarity NPC475444
0.9917 High Similarity NPC319719
0.9917 High Similarity NPC233223
0.9917 High Similarity NPC473679
0.9917 High Similarity NPC324933
0.9917 High Similarity NPC475177
0.9917 High Similarity NPC322904
0.9832 High Similarity NPC45606
0.9832 High Similarity NPC220838
0.9667 High Similarity NPC23020
0.9667 High Similarity NPC472268
0.9667 High Similarity NPC112492
0.9667 High Similarity NPC472269
0.9667 High Similarity NPC472270
0.95 High Similarity NPC297950
0.9421 High Similarity NPC470516
0.9167 High Similarity NPC293031
0.9167 High Similarity NPC275225
0.9167 High Similarity NPC51099
0.9167 High Similarity NPC68767
0.916 High Similarity NPC207738
0.912 High Similarity NPC312650
0.912 High Similarity NPC476776
0.912 High Similarity NPC478154
0.9113 High Similarity NPC47995
0.9113 High Similarity NPC265841
0.9083 High Similarity NPC476150
0.9083 High Similarity NPC144644
0.9083 High Similarity NPC37860
0.9083 High Similarity NPC473130
0.9083 High Similarity NPC476127
0.9083 High Similarity NPC142151
0.9083 High Similarity NPC110385
0.9083 High Similarity NPC267694
0.9083 High Similarity NPC473645
0.9083 High Similarity NPC153673
0.9076 High Similarity NPC105800
0.9076 High Similarity NPC232237
0.9055 High Similarity NPC279915
0.9055 High Similarity NPC110700
0.9048 High Similarity NPC225791
0.9048 High Similarity NPC476779
0.9048 High Similarity NPC478151
0.904 High Similarity NPC478155
0.904 High Similarity NPC476774
0.904 High Similarity NPC271610
0.904 High Similarity NPC476775
0.904 High Similarity NPC476780
0.904 High Similarity NPC25998
0.9032 High Similarity NPC470475
0.9032 High Similarity NPC470476
0.9 High Similarity NPC470517
0.9 High Similarity NPC470911
0.9 High Similarity NPC471577
0.9 High Similarity NPC477464
0.9 High Similarity NPC470915
0.8992 High Similarity NPC8524
0.8992 High Similarity NPC69811
0.8992 High Similarity NPC220160
0.8992 High Similarity NPC191827
0.8992 High Similarity NPC470876
0.8992 High Similarity NPC475209
0.8992 High Similarity NPC102505
0.8992 High Similarity NPC123522
0.8992 High Similarity NPC473824
0.8992 High Similarity NPC309223
0.8992 High Similarity NPC475514
0.8992 High Similarity NPC85154
0.8992 High Similarity NPC104137
0.8992 High Similarity NPC33012
0.8992 High Similarity NPC286457
0.8992 High Similarity NPC475119
0.8992 High Similarity NPC473452
0.8976 High Similarity NPC476778
0.8976 High Similarity NPC476777
0.8968 High Similarity NPC71391
0.8968 High Similarity NPC478152
0.8968 High Similarity NPC192765
0.8968 High Similarity NPC473918
0.8968 High Similarity NPC178264
0.8968 High Similarity NPC277212
0.8968 High Similarity NPC478153
0.8968 High Similarity NPC478150
0.8968 High Similarity NPC46823
0.8968 High Similarity NPC30279
0.896 High Similarity NPC11577
0.896 High Similarity NPC82380
0.896 High Similarity NPC107536
0.896 High Similarity NPC141600
0.896 High Similarity NPC269484
0.896 High Similarity NPC88311
0.896 High Similarity NPC9470
0.896 High Similarity NPC115656
0.896 High Similarity NPC252657
0.896 High Similarity NPC472267
0.896 High Similarity NPC273878
0.896 High Similarity NPC244296
0.896 High Similarity NPC97918
0.896 High Similarity NPC470518
0.896 High Similarity NPC252289
0.896 High Similarity NPC1314
0.896 High Similarity NPC305793
0.896 High Similarity NPC477196
0.896 High Similarity NPC280029
0.8926 High Similarity NPC268184
0.8926 High Similarity NPC476991
0.8917 High Similarity NPC470515
0.8917 High Similarity NPC36831
0.8917 High Similarity NPC471548
0.8917 High Similarity NPC237191
0.8917 High Similarity NPC475899
0.8908 High Similarity NPC305267
0.8908 High Similarity NPC51465
0.8908 High Similarity NPC288205
0.8908 High Similarity NPC476992
0.8908 High Similarity NPC291903
0.8908 High Similarity NPC75287
0.8908 High Similarity NPC37134
0.8908 High Similarity NPC26626
0.8889 High Similarity NPC172374
0.8889 High Similarity NPC476074
0.8889 High Similarity NPC264566
0.8889 High Similarity NPC475167
0.8889 High Similarity NPC475377
0.8889 High Similarity NPC45346
0.8889 High Similarity NPC134914
0.8889 High Similarity NPC173435
0.8889 High Similarity NPC329993
0.8889 High Similarity NPC301639
0.8889 High Similarity NPC478064
0.8889 High Similarity NPC477197
0.8889 High Similarity NPC478065
0.8889 High Similarity NPC262796
0.888 High Similarity NPC477192
0.888 High Similarity NPC477194
0.888 High Similarity NPC477193
0.888 High Similarity NPC477191
0.8871 High Similarity NPC470218
0.8852 High Similarity NPC170084
0.8852 High Similarity NPC476204
0.8852 High Similarity NPC477463
0.8843 High Similarity NPC51564
0.8843 High Similarity NPC470914
0.8843 High Similarity NPC135849
0.8843 High Similarity NPC473386
0.8843 High Similarity NPC25663
0.8833 High Similarity NPC474483
0.8833 High Similarity NPC148417
0.8833 High Similarity NPC471580
0.8833 High Similarity NPC300419
0.8833 High Similarity NPC68175
0.8833 High Similarity NPC136768
0.8833 High Similarity NPC473405
0.8833 High Similarity NPC110633
0.8824 High Similarity NPC123199
0.8824 High Similarity NPC475160
0.8824 High Similarity NPC224381
0.8824 High Similarity NPC57484
0.8824 High Similarity NPC475486
0.8824 High Similarity NPC293330
0.8824 High Similarity NPC100639
0.8824 High Similarity NPC227551
0.8824 High Similarity NPC475140
0.8824 High Similarity NPC298034
0.8824 High Similarity NPC70809
0.8824 High Similarity NPC4328
0.8824 High Similarity NPC250247
0.8824 High Similarity NPC65105
0.8824 High Similarity NPC294453
0.8824 High Similarity NPC54636
0.8824 High Similarity NPC41061
0.8824 High Similarity NPC164389
0.8824 High Similarity NPC161717
0.8824 High Similarity NPC471385
0.8824 High Similarity NPC469782
0.8824 High Similarity NPC261506
0.8824 High Similarity NPC43550
0.8824 High Similarity NPC202828
0.8824 High Similarity NPC305981
0.8824 High Similarity NPC476068
0.8824 High Similarity NPC60557
0.8824 High Similarity NPC473714
0.8824 High Similarity NPC309907
0.8824 High Similarity NPC79643
0.8824 High Similarity NPC204414
0.8824 High Similarity NPC119592
0.8824 High Similarity NPC471550
0.8824 High Similarity NPC236638
0.8824 High Similarity NPC71065
0.8824 High Similarity NPC67857
0.8824 High Similarity NPC76972
0.8819 High Similarity NPC477195
0.881 High Similarity NPC476966
0.881 High Similarity NPC477079
0.881 High Similarity NPC470913

  Chemically structural similarity: II. Similar Clinical/Approved Drugs

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules.

●  The left chart: Distribution of similarity level between NPC311178 and all drugs/candidates.
●  The right table: Most similar clinical/approved drugs (Tc>=0.56 or Top200).

Similarity Score Similarity Level Drug ID Developmental Stage
0.856 High Similarity NPD8328 Phase 3
0.84 Intermediate Similarity NPD8516 Approved
0.84 Intermediate Similarity NPD8517 Approved
0.84 Intermediate Similarity NPD8515 Approved
0.8279 Intermediate Similarity NPD8133 Approved
0.8254 Intermediate Similarity NPD8513 Phase 3
0.8175 Intermediate Similarity NPD8377 Approved
0.8175 Intermediate Similarity NPD8294 Approved
0.8167 Intermediate Similarity NPD6686 Approved
0.811 Intermediate Similarity NPD8378 Approved
0.811 Intermediate Similarity NPD8380 Approved
0.811 Intermediate Similarity NPD8296 Approved
0.811 Intermediate Similarity NPD8379 Approved
0.811 Intermediate Similarity NPD8335 Approved
0.8092 Intermediate Similarity NPD7319 Approved
0.808 Intermediate Similarity NPD8295 Clinical (unspecified phase)
0.8 Intermediate Similarity NPD7507 Approved
0.7969 Intermediate Similarity NPD8033 Approved
0.7879 Intermediate Similarity NPD7736 Approved
0.7829 Intermediate Similarity NPD7503 Approved
0.7823 Intermediate Similarity NPD8413 Clinical (unspecified phase)
0.7805 Intermediate Similarity NPD8132 Clinical (unspecified phase)
0.7734 Intermediate Similarity NPD7328 Approved
0.7734 Intermediate Similarity NPD7327 Approved
0.7674 Intermediate Similarity NPD7516 Approved
0.7656 Intermediate Similarity NPD7115 Discovery
0.75 Intermediate Similarity NPD6412 Phase 2
0.75 Intermediate Similarity NPD6370 Approved
0.7407 Intermediate Similarity NPD8293 Discontinued
0.7388 Intermediate Similarity NPD7492 Approved
0.7355 Intermediate Similarity NPD4225 Approved
0.7348 Intermediate Similarity NPD6054 Approved
0.7333 Intermediate Similarity NPD6616 Approved
0.7279 Intermediate Similarity NPD7078 Approved
0.7279 Intermediate Similarity NPD8074 Phase 3
0.7273 Intermediate Similarity NPD7902 Approved
0.7244 Intermediate Similarity NPD4061 Clinical (unspecified phase)
0.7218 Intermediate Similarity NPD6319 Approved
0.7213 Intermediate Similarity NPD7638 Approved
0.7188 Intermediate Similarity NPD5955 Clinical (unspecified phase)
0.7167 Intermediate Similarity NPD7748 Approved
0.7165 Intermediate Similarity NPD5345 Clinical (unspecified phase)
0.7164 Intermediate Similarity NPD6016 Approved
0.7164 Intermediate Similarity NPD6015 Approved
0.7154 Intermediate Similarity NPD7640 Approved
0.7154 Intermediate Similarity NPD7639 Approved
0.7111 Intermediate Similarity NPD5988 Approved
0.709 Intermediate Similarity NPD6059 Approved
0.7077 Intermediate Similarity NPD6882 Approved
0.7077 Intermediate Similarity NPD8297 Approved
0.7025 Intermediate Similarity NPD7900 Approved
0.7025 Intermediate Similarity NPD7901 Clinical (unspecified phase)
0.7 Intermediate Similarity NPD7515 Phase 2
0.6992 Remote Similarity NPD6009 Approved
0.6953 Remote Similarity NPD5954 Clinical (unspecified phase)
0.6935 Remote Similarity NPD8029 Clinical (unspecified phase)
0.6894 Remote Similarity NPD4632 Approved
0.687 Remote Similarity NPD6650 Approved
0.687 Remote Similarity NPD6649 Approved
0.6822 Remote Similarity NPD7899 Clinical (unspecified phase)
0.6797 Remote Similarity NPD8170 Clinical (unspecified phase)
0.6769 Remote Similarity NPD6899 Approved
0.6769 Remote Similarity NPD6881 Approved
0.6742 Remote Similarity NPD8130 Phase 1
0.6718 Remote Similarity NPD6373 Approved
0.6718 Remote Similarity NPD6372 Approved
0.6692 Remote Similarity NPD5697 Approved
0.6691 Remote Similarity NPD6067 Discontinued
0.6667 Remote Similarity NPD4634 Approved
0.6667 Remote Similarity NPD6883 Approved
0.6667 Remote Similarity NPD7290 Approved
0.6667 Remote Similarity NPD6921 Approved
0.6667 Remote Similarity NPD7102 Approved
0.6667 Remote Similarity NPD6371 Approved
0.6641 Remote Similarity NPD7632 Discontinued
0.6639 Remote Similarity NPD6698 Approved
0.6639 Remote Similarity NPD46 Approved
0.662 Remote Similarity NPD6033 Approved
0.6617 Remote Similarity NPD6869 Approved
0.6617 Remote Similarity NPD6847 Approved
0.6617 Remote Similarity NPD6617 Approved
0.6615 Remote Similarity NPD6675 Approved
0.6615 Remote Similarity NPD7128 Approved
0.6615 Remote Similarity NPD6402 Approved
0.6615 Remote Similarity NPD5739 Approved
0.6599 Remote Similarity NPD7966 Clinical (unspecified phase)
0.6591 Remote Similarity NPD6013 Approved
0.6591 Remote Similarity NPD6014 Approved
0.6591 Remote Similarity NPD6012 Approved
0.6585 Remote Similarity NPD8035 Phase 2
0.6585 Remote Similarity NPD8034 Phase 2
0.6571 Remote Similarity NPD7830 Approved
0.6571 Remote Similarity NPD7829 Approved
0.6571 Remote Similarity NPD7604 Phase 2
0.6562 Remote Similarity NPD5344 Discontinued
0.6549 Remote Similarity NPD8448 Approved
0.6547 Remote Similarity NPD5983 Phase 2
0.6536 Remote Similarity NPD7625 Phase 1
0.6528 Remote Similarity NPD8391 Approved
0.6528 Remote Similarity NPD8390 Approved
0.6528 Remote Similarity NPD8392 Approved
0.6527 Remote Similarity NPD7799 Discontinued
0.6515 Remote Similarity NPD7320 Approved
0.6515 Remote Similarity NPD6011 Approved
0.65 Remote Similarity NPD1694 Approved
0.6489 Remote Similarity NPD6008 Approved
0.6479 Remote Similarity NPD6336 Discontinued
0.6479 Remote Similarity NPD8451 Approved
0.6439 Remote Similarity NPD5701 Approved
0.6414 Remote Similarity NPD5956 Approved
0.64 Remote Similarity NPD8171 Discontinued
0.64 Remote Similarity NPD6399 Phase 3
0.6393 Remote Similarity NPD3573 Approved
0.6385 Remote Similarity NPD5211 Phase 2
0.6371 Remote Similarity NPD7838 Discovery
0.637 Remote Similarity NPD7260 Phase 2
0.6357 Remote Similarity NPD5286 Approved
0.6357 Remote Similarity NPD5285 Approved
0.6357 Remote Similarity NPD4696 Approved
0.6338 Remote Similarity NPD7642 Approved
0.6328 Remote Similarity NPD6084 Phase 2
0.6328 Remote Similarity NPD6083 Phase 2
0.6324 Remote Similarity NPD6053 Discontinued
0.632 Remote Similarity NPD7983 Approved
0.632 Remote Similarity NPD6079 Approved
0.632 Remote Similarity NPD6411 Approved
0.6311 Remote Similarity NPD3618 Phase 1
0.6299 Remote Similarity NPD1698 Clinical (unspecified phase)
0.6294 Remote Similarity NPD8340 Approved
0.6294 Remote Similarity NPD8299 Approved
0.6294 Remote Similarity NPD8342 Approved
0.6294 Remote Similarity NPD8341 Approved
0.6288 Remote Similarity NPD5141 Approved
0.6286 Remote Similarity NPD7100 Approved
0.6286 Remote Similarity NPD7101 Approved
0.6284 Remote Similarity NPD8450 Suspended
0.6276 Remote Similarity NPD8337 Approved
0.6276 Remote Similarity NPD8336 Approved
0.627 Remote Similarity NPD5779 Approved
0.627 Remote Similarity NPD5778 Approved
0.626 Remote Similarity NPD5225 Approved
0.626 Remote Similarity NPD5224 Approved
0.626 Remote Similarity NPD4633 Approved
0.626 Remote Similarity NPD5226 Approved
0.625 Remote Similarity NPD4752 Clinical (unspecified phase)
0.625 Remote Similarity NPD6401 Clinical (unspecified phase)
0.6231 Remote Similarity NPD6648 Approved
0.623 Remote Similarity NPD7520 Clinical (unspecified phase)
0.622 Remote Similarity NPD5282 Discontinued
0.6216 Remote Similarity NPD8338 Approved
0.6216 Remote Similarity NPD8449 Approved
0.6214 Remote Similarity NPD6335 Approved
0.6212 Remote Similarity NPD5175 Approved
0.6212 Remote Similarity NPD5174 Approved
0.621 Remote Similarity NPD7513 Clinical (unspecified phase)
0.6207 Remote Similarity NPD8313 Approved
0.6207 Remote Similarity NPD8312 Approved
0.6202 Remote Similarity NPD4755 Approved
0.6199 Remote Similarity NPD8470 Clinical (unspecified phase)
0.6197 Remote Similarity NPD8444 Approved
0.6197 Remote Similarity NPD6291 Clinical (unspecified phase)
0.6187 Remote Similarity NPD6274 Approved
0.6183 Remote Similarity NPD5223 Approved
0.6179 Remote Similarity NPD3574 Clinical (unspecified phase)
0.6172 Remote Similarity NPD6356 Clinical (unspecified phase)
0.6171 Remote Similarity NPD8407 Phase 2
0.616 Remote Similarity NPD5764 Clinical (unspecified phase)
0.616 Remote Similarity NPD6101 Approved
0.616 Remote Similarity NPD5328 Approved
0.6154 Remote Similarity NPD5696 Approved
0.6148 Remote Similarity NPD4730 Approved
0.6148 Remote Similarity NPD4729 Approved
0.6143 Remote Similarity NPD6317 Approved
0.6142 Remote Similarity NPD4202 Approved
0.6134 Remote Similarity NPD7645 Phase 2
0.6124 Remote Similarity NPD5221 Approved
0.6124 Remote Similarity NPD5222 Approved
0.6124 Remote Similarity NPD5220 Clinical (unspecified phase)
0.6111 Remote Similarity NPD5785 Approved
0.6107 Remote Similarity NPD4700 Approved
0.6107 Remote Similarity NPD6845 Suspended
0.6099 Remote Similarity NPD6313 Approved
0.6099 Remote Similarity NPD6314 Approved
0.6092 Remote Similarity NPD8368 Discontinued
0.6077 Remote Similarity NPD5173 Approved
0.6071 Remote Similarity NPD6868 Approved
0.6063 Remote Similarity NPD7637 Suspended
0.6058 Remote Similarity NPD5249 Phase 3
0.6058 Remote Similarity NPD5248 Approved
0.6058 Remote Similarity NPD5250 Approved
0.6058 Remote Similarity NPD5247 Approved
0.6058 Remote Similarity NPD5251 Approved
0.6048 Remote Similarity NPD6409 Approved
0.6048 Remote Similarity NPD7334 Approved
0.6048 Remote Similarity NPD5330 Approved
0.6048 Remote Similarity NPD7146 Approved
0.6048 Remote Similarity NPD6684 Approved
0.6048 Remote Similarity NPD7521 Approved
0.6047 Remote Similarity NPD5695 Phase 3
0.6047 Remote Similarity NPD5210 Approved

  Bioactivity similarity: Similar Natural Products in NPASS

Bioactivity similarity was calculated based on bioactivity descriptors of compounds. The bioactivity descriptors were calculated by a recently developed AI algorithm Chemical Checker (CC) [Nature Biotechnology, 38:1087–1096, 2020; Nature Communications, 12:3932, 2021], which evaluated bioactivity similarities at five levels:
A: chemistry similarity;
B: biological targets similarity;
C: networks similarity;
D: cell-based bioactivity similarity;
E: similarity based on clinical data.

Those 5 categories of CC bioactivity descriptors were calculated and then subjected to manifold projection using UMAP algorithm, to project all NPs on a 2-Dimensional space. The current NP was highlighted with a small circle in the 2-D map. Below figures: left-to-right, A-to-E.

A: chemistry similarity
B: biological targets similarity
C: networks similarity
D: cell-based bioactivity similarity
E: similarity based on clinical data