Structure

Physi-Chem Properties

Molecular Weight:  853.33
Volume:  853.449
LogP:  3.78
LogD:  2.403
LogS:  -4.502
# Rotatable Bonds:  15
TPSA:  221.29
# H-Bond Aceptor:  15
# H-Bond Donor:  4
# Rings:  7
# Heavy Atoms:  15

MedChem Properties

QED Drug-Likeness Score:  0.168
Synthetic Accessibility Score:  6.029
Fsp3:  0.447
Lipinski Rule-of-5:  Rejected
Pfizer Rule:  Accepted
GSK Rule:  Rejected
BMS Rule:  0
Golden Triangle Rule:  Rejected
Chelating Alert:  0
PAINS Alert:  0

ADMET Properties (ADMETlab2.0)

ADMET: Absorption

Caco-2 Permeability:  -5.487
MDCK Permeability:  5.586403494817205e-05
Pgp-inhibitor:  1.0
Pgp-substrate:  0.998
Human Intestinal Absorption (HIA):  0.085
20% Bioavailability (F20%):  0.993
30% Bioavailability (F30%):  0.995

ADMET: Distribution

Blood-Brain-Barrier Penetration (BBB):  0.116
Plasma Protein Binding (PPB):  93.7495346069336%
Volume Distribution (VD):  0.922
Pgp-substrate:  6.59559440612793%

ADMET: Metabolism

CYP1A2-inhibitor:  0.01
CYP1A2-substrate:  0.023
CYP2C19-inhibitor:  0.11
CYP2C19-substrate:  0.067
CYP2C9-inhibitor:  0.863
CYP2C9-substrate:  0.049
CYP2D6-inhibitor:  0.029
CYP2D6-substrate:  0.058
CYP3A4-inhibitor:  0.792
CYP3A4-substrate:  0.694

ADMET: Excretion

Clearance (CL):  2.9
Half-life (T1/2):  0.022

ADMET: Toxicity

hERG Blockers:  0.2
Human Hepatotoxicity (H-HT):  0.953
Drug-inuced Liver Injury (DILI):  0.962
AMES Toxicity:  0.006
Rat Oral Acute Toxicity:  0.173
Maximum Recommended Daily Dose:  0.404
Skin Sensitization:  0.06
Carcinogencity:  0.018
Eye Corrosion:  0.003
Eye Irritation:  0.005
Respiratory Toxicity:  0.929

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  Natural Product: NPC181964

Natural Product ID:  NPC181964
Common Name*:   RCINICONZNJXQF-LYTKHFMESA-N
IUPAC Name:   n.a.
Synonyms:   7-Epi-Taxol
Standard InCHIKey:  RCINICONZNJXQF-LYTKHFMESA-N
Standard InCHI:  InChI=1S/C47H51NO14/c1-25-31(60-43(56)36(52)35(28-16-10-7-11-17-28)48-41(54)29-18-12-8-13-19-29)23-47(57)40(61-42(55)30-20-14-9-15-21-30)38-45(6,32(51)22-33-46(38,24-58-33)62-27(3)50)39(53)37(59-26(2)49)34(25)44(47,4)5/h7-21,31-33,35-38,40,51-52,57H,22-24H2,1-6H3,(H,48,54)/t31-,32+,33+,35-,36+,37+,38-,40-,45+,46-,47+/m0/s1
SMILES:  CC(=O)O[C@H]1C(=O)[C@]2(C)[C@H](O)C[C@@H]3[C@]([C@H]2[C@@H]([C@]2(C(C1=C(C)[C@@H](OC(=O)[C@@H]([C@H](c1ccccc1)N=C(c1ccccc1)O)O)C2)(C)C)O)OC(=O)c1ccccc1)(CO3)OC(=O)C
Synthetic Gene Cluster:   n.a.
ChEMBL Identifier:   CHEMBL503883
PubChem CID:   184492
Chemical Classification**:  
  • CHEMONTID:0000000 [Organic compounds]
    • [CHEMONTID:0000012] Lipids and lipid-like molecules
      • [CHEMONTID:0000259] Prenol lipids
        • [CHEMONTID:0001551] Diterpenoids
          • [CHEMONTID:0000676] Taxanes and derivatives

*Note: the InCHIKey will be temporarily assigned as the "Common Name" if no IUPAC name or alternative short name is available.
**Note: the Chemical Classification was calculated by NPClassifier Version 1.5. Reference: PMID:34662515.

  Species Source

Organism ID Organism Name Taxonomy Level Family SuperKingdom Isolation Part Collection Location Collection Time Reference
NPO15018.1 Dioscorea collettii var. hypoglauca Varieties Dioscoreaceae Eukaryota n.a. n.a. n.a. PMID[10075765]
NPO24820 Taxus cuspidata Species Taxaceae Eukaryota n.a. Japan n.a. PMID[14987066]
NPO24820 Taxus cuspidata Species Taxaceae Eukaryota n.a. n.a. n.a. PMID[15844936]
NPO24820 Taxus cuspidata Species Taxaceae Eukaryota n.a. Japan n.a. PMID[15974623]
NPO24820 Taxus cuspidata Species Taxaceae Eukaryota n.a. n.a. n.a. PMID[15974623]
NPO23720 Taxus wallichiana Species Taxaceae Eukaryota needles Himalayan n.a. PMID[16480866]
NPO27064 Taxus brevifolia Species Taxaceae Eukaryota n.a. n.a. n.a. PMID[1955887]
NPO11351 Stephania japonica Species Menispermaceae Eukaryota Aerial parts n.a. n.a. PMID[20426456]
NPO14409 Dioscorea nipponica Species Dioscoreaceae Eukaryota rhizomes n.a. n.a. PMID[23707257]
NPO23720 Taxus wallichiana Species Taxaceae Eukaryota Stem Bark n.a. n.a. PMID[28240909]
NPO23720 Taxus wallichiana Species Taxaceae Eukaryota Roots n.a. n.a. PMID[28581744]
NPO27064 Taxus brevifolia Species Taxaceae Eukaryota n.a. n.a. n.a. PMID[2878063]
NPO27064 Taxus brevifolia Species Taxaceae Eukaryota n.a. n.a. n.a. PMID[7130988]
NPO23720 Taxus wallichiana Species Taxaceae Eukaryota n.a. n.a. n.a. PMID[7264680]
NPO27064 Taxus brevifolia Species Taxaceae Eukaryota bark n.a. n.a. PMID[7623034]
NPO11351 Stephania japonica Species Menispermaceae Eukaryota n.a. n.a. n.a. PMID[9392886]
NPO23720 Taxus wallichiana Species Taxaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO27064 Taxus brevifolia Species Taxaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO31560 Dioscorea hypoglauca Species Dioscoreaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO27817 Stephania hernandifolia Species Menispermaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO27509 Dioscorea zingiberensis Species Dioscoreaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO4824 Cocculus trilobus Species Menispermaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO15018 Dioscorea collettii Species Dioscoreaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO24820 Taxus cuspidata Species Taxaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO4863 Dioscorea futschauensis Species Dioscoreaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO14409 Dioscorea nipponica Species Dioscoreaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO11351 Stephania japonica Species Menispermaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO23313 Dioscorea althaeoides Species Dioscoreaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO4863 Dioscorea futschauensis Species Dioscoreaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO24820 Taxus cuspidata Species Taxaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO4824 Cocculus trilobus Species Menispermaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO23720 Taxus wallichiana Species Taxaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO27064 Taxus brevifolia Species Taxaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO27509 Dioscorea zingiberensis Species Dioscoreaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO15018.1 Dioscorea collettii var. hypoglauca Varieties Dioscoreaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO27817 Stephania hernandifolia Species Menispermaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO14409 Dioscorea nipponica Species Dioscoreaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO11351 Stephania japonica Species Menispermaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO15018 Dioscorea collettii Species Dioscoreaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO23313 Dioscorea althaeoides Species Dioscoreaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO15018 Dioscorea collettii Species Dioscoreaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO27817 Stephania hernandifolia Species Menispermaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO4824 Cocculus trilobus Species Menispermaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO27064 Taxus brevifolia Species Taxaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO11351 Stephania japonica Species Menispermaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO23313 Dioscorea althaeoides Species Dioscoreaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO27509 Dioscorea zingiberensis Species Dioscoreaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO14409 Dioscorea nipponica Species Dioscoreaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO4863 Dioscorea futschauensis Species Dioscoreaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO24820 Taxus cuspidata Species Taxaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO31560 Dioscorea hypoglauca Species Dioscoreaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO23720 Taxus wallichiana Species Taxaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO14409 Dioscorea nipponica Species Dioscoreaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO4863 Dioscorea futschauensis Species Dioscoreaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO23313 Dioscorea althaeoides Species Dioscoreaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO15018 Dioscorea collettii Species Dioscoreaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO27817 Stephania hernandifolia Species Menispermaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO15018.1 Dioscorea collettii var. hypoglauca Varieties Dioscoreaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO4824 Cocculus trilobus Species Menispermaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO11351 Stephania japonica Species Menispermaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO14409 Dioscorea nipponica Species Dioscoreaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO24820 Taxus cuspidata Species Taxaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO27509 Dioscorea zingiberensis Species Dioscoreaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO27064 Taxus brevifolia Species Taxaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO4863 Dioscorea futschauensis Species Dioscoreaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO23720 Taxus wallichiana Species Taxaceae Eukaryota n.a. n.a. n.a. Database[UNPD]

☑ Note for Reference:
In addition to directly collecting NP source organism data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated them from below databases:
UNPD: Universal Natural Products Database [PMID: 23638153].
StreptomeDB: a database of streptomycetes natural products [PMID: 33051671].
TM-MC: a database of medicinal materials and chemical compounds in Northeast Asian traditional medicine [PMID: 26156871].
TCM@Taiwan: a Traditional Chinese Medicine database [PMID: 21253603].
TCMID: a Traditional Chinese Medicine database [PMID: 29106634].
TCMSP: The traditional Chinese medicine systems pharmacology database and analysis platform [PMID: 24735618].
HerDing: a herb recommendation system to treat diseases using genes and chemicals [PMID: 26980517].
MetaboLights: a metabolomics database [PMID: 27010336].
FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].

  NP Quantity Composition/Concentration

Organism ID NP ID Organism Material Preparation Organism Part NP Quantity (Standard) NP Quantity (Minimum) NP Quantity (Maximum) Quantity Unit Reference

☑ Note for Reference:
In addition to directly collecting NP quantitative data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated NP quantitative records for specific NP domains (e.g., NPS from foods or herbs) from domain-specific databases. These databases include:
DUKE: Dr. Duke's Phytochemical and Ethnobotanical Databases.
PHENOL EXPLORER: is the first comprehensive database on polyphenol content in foods [PMID: 24103452], its homepage can be accessed at here.
FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].

  Biological Activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference
NPT91 Cell Line KB Homo sapiens ED50 = 3.0 10'-5 ug/ml PMID[540459]
NPT91 Cell Line KB Homo sapiens IC50 = 0.0015 ug.mL-1 PMID[540460]
NPT91 Cell Line KB Homo sapiens ED50 = 3.0 10'-5 ug/ml PMID[540461]
NPT165 Cell Line HeLa Homo sapiens IC50 = 0.05 nM PMID[540462]
NPT2 Others Unspecified IC50 = 42700.0 nM PMID[540462]
NPT312 Organism Saccharomyces cerevisiae Saccharomyces cerevisiae IC50 > 100000.0 nM PMID[540463]
NPT312 Organism Saccharomyces cerevisiae Saccharomyces cerevisiae IC50 = 71500.0 nM PMID[540463]

☑ Note for Activity Records:
☉ The quantitative biological activities were primarily integrated from ChEMBL (Version-30) database and were also directly collected from PubMed literature. PubMed PMID was provided as the reference link for each activity record.

  Chemically structural similarity: I. Similar Active Natural Products in NPASS

Top-200 similar NPs were calculated against the active-NP-set (includes 4,3285 NPs with experimentally-derived bioactivity available in NPASS)

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules. Tc lies between [0, 1] where '1' indicates the highest similarity. What is Tanimoto coefficient

●  The left chart: Distribution of similarity level between NPC181964 and all remaining natural products in the NPASS database.
●  The right table: Most similar natural products (Tc>=0.56 or Top200).

Similarity Score Similarity Level Natural Product ID
1.0 High Similarity NPC208553
1.0 High Similarity NPC471606
0.9943 High Similarity NPC191193
0.9943 High Similarity NPC215892
0.9943 High Similarity NPC473558
0.9943 High Similarity NPC321072
0.9943 High Similarity NPC242662
0.983 High Similarity NPC473490
0.977 High Similarity NPC67246
0.977 High Similarity NPC33372
0.9713 High Similarity NPC453583
0.9713 High Similarity NPC475336
0.9713 High Similarity NPC473300
0.9613 High Similarity NPC116862
0.96 High Similarity NPC317882
0.96 High Similarity NPC324251
0.96 High Similarity NPC473400
0.96 High Similarity NPC275170
0.96 High Similarity NPC471754
0.96 High Similarity NPC306001
0.96 High Similarity NPC471629
0.96 High Similarity NPC206211
0.9598 High Similarity NPC327699
0.9558 High Similarity NPC289383
0.9448 High Similarity NPC472391
0.9432 High Similarity NPC471623
0.9392 High Similarity NPC472392
0.9286 High Similarity NPC472375
0.8913 High Similarity NPC36607
0.8276 Intermediate Similarity NPC259144
0.8276 Intermediate Similarity NPC114357
0.8276 Intermediate Similarity NPC155329
0.8218 Intermediate Similarity NPC248265
0.8218 Intermediate Similarity NPC11588
0.8218 Intermediate Similarity NPC229545
0.8218 Intermediate Similarity NPC219419
0.8218 Intermediate Similarity NPC134685
0.8182 Intermediate Similarity NPC472393
0.8171 Intermediate Similarity NPC228204
0.8171 Intermediate Similarity NPC26033
0.8136 Intermediate Similarity NPC471102
0.8125 Intermediate Similarity NPC217091
0.8125 Intermediate Similarity NPC106895
0.8114 Intermediate Similarity NPC1173
0.8114 Intermediate Similarity NPC472030
0.8114 Intermediate Similarity NPC472022
0.8114 Intermediate Similarity NPC473414
0.8114 Intermediate Similarity NPC265395
0.8114 Intermediate Similarity NPC472005
0.8114 Intermediate Similarity NPC158333
0.8114 Intermediate Similarity NPC242262
0.8114 Intermediate Similarity NPC237549
0.8114 Intermediate Similarity NPC256142
0.8114 Intermediate Similarity NPC304876
0.8114 Intermediate Similarity NPC249471
0.8114 Intermediate Similarity NPC257213
0.8111 Intermediate Similarity NPC471493
0.8103 Intermediate Similarity NPC197037
0.8068 Intermediate Similarity NPC21410
0.8068 Intermediate Similarity NPC112523
0.8068 Intermediate Similarity NPC114410
0.8068 Intermediate Similarity NPC473670
0.8068 Intermediate Similarity NPC282239
0.8046 Intermediate Similarity NPC7095
0.8046 Intermediate Similarity NPC91730
0.8011 Intermediate Similarity NPC77719
0.7989 Intermediate Similarity NPC250046
0.7989 Intermediate Similarity NPC60509
0.7989 Intermediate Similarity NPC81698
0.7978 Intermediate Similarity NPC469771
0.7966 Intermediate Similarity NPC472549
0.7944 Intermediate Similarity NPC476077
0.7943 Intermediate Similarity NPC165260
0.7943 Intermediate Similarity NPC198455
0.7943 Intermediate Similarity NPC161239
0.7943 Intermediate Similarity NPC112216
0.7931 Intermediate Similarity NPC217918
0.7898 Intermediate Similarity NPC306799
0.7898 Intermediate Similarity NPC470153
0.7898 Intermediate Similarity NPC51602
0.7898 Intermediate Similarity NPC101043
0.7898 Intermediate Similarity NPC471103
0.7853 Intermediate Similarity NPC472548
0.7853 Intermediate Similarity NPC477905
0.7841 Intermediate Similarity NPC254558
0.7841 Intermediate Similarity NPC470245
0.7841 Intermediate Similarity NPC473214
0.7816 Intermediate Similarity NPC127857
0.7784 Intermediate Similarity NPC473215
0.7784 Intermediate Similarity NPC476975
0.7765 Intermediate Similarity NPC473632
0.7765 Intermediate Similarity NPC132599
0.7765 Intermediate Similarity NPC473611
0.7765 Intermediate Similarity NPC469730
0.7759 Intermediate Similarity NPC38696
0.7684 Intermediate Similarity NPC266265
0.7684 Intermediate Similarity NPC270590
0.7684 Intermediate Similarity NPC92293
0.7684 Intermediate Similarity NPC301556
0.7684 Intermediate Similarity NPC471101
0.767 Intermediate Similarity NPC474935
0.7644 Intermediate Similarity NPC182869
0.7644 Intermediate Similarity NPC34012
0.7627 Intermediate Similarity NPC281717
0.7614 Intermediate Similarity NPC200471
0.7614 Intermediate Similarity NPC472575
0.7614 Intermediate Similarity NPC174982
0.7614 Intermediate Similarity NPC471100
0.7614 Intermediate Similarity NPC473088
0.7614 Intermediate Similarity NPC470157
0.7614 Intermediate Similarity NPC472572
0.7614 Intermediate Similarity NPC158663
0.7614 Intermediate Similarity NPC184817
0.7614 Intermediate Similarity NPC301946
0.7614 Intermediate Similarity NPC471104
0.7614 Intermediate Similarity NPC472568
0.7614 Intermediate Similarity NPC171525
0.7614 Intermediate Similarity NPC472571
0.7614 Intermediate Similarity NPC177940
0.7614 Intermediate Similarity NPC476973
0.7614 Intermediate Similarity NPC471107
0.7614 Intermediate Similarity NPC472556
0.7614 Intermediate Similarity NPC96903
0.7614 Intermediate Similarity NPC469349
0.7614 Intermediate Similarity NPC277053
0.7614 Intermediate Similarity NPC29704
0.7614 Intermediate Similarity NPC470159
0.7614 Intermediate Similarity NPC70403
0.7594 Intermediate Similarity NPC102465
0.7581 Intermediate Similarity NPC30171
0.7568 Intermediate Similarity NPC150893
0.7568 Intermediate Similarity NPC295408
0.7568 Intermediate Similarity NPC329960
0.7557 Intermediate Similarity NPC163719
0.7557 Intermediate Similarity NPC472570
0.7557 Intermediate Similarity NPC25768
0.7557 Intermediate Similarity NPC80895
0.7557 Intermediate Similarity NPC241951
0.7557 Intermediate Similarity NPC95265
0.7557 Intermediate Similarity NPC475122
0.7557 Intermediate Similarity NPC471912
0.7557 Intermediate Similarity NPC188865
0.7557 Intermediate Similarity NPC470152
0.7557 Intermediate Similarity NPC11685
0.7557 Intermediate Similarity NPC470231
0.7557 Intermediate Similarity NPC70716
0.7557 Intermediate Similarity NPC472569
0.7557 Intermediate Similarity NPC125106
0.7557 Intermediate Similarity NPC95810
0.7557 Intermediate Similarity NPC476974
0.7557 Intermediate Similarity NPC57628
0.7557 Intermediate Similarity NPC472573
0.7557 Intermediate Similarity NPC475759
0.7553 Intermediate Similarity NPC477471
0.7553 Intermediate Similarity NPC477466
0.7553 Intermediate Similarity NPC477469
0.7553 Intermediate Similarity NPC477473
0.7541 Intermediate Similarity NPC469399
0.7527 Intermediate Similarity NPC471134
0.7527 Intermediate Similarity NPC11410
0.75 Intermediate Similarity NPC96801
0.75 Intermediate Similarity NPC477894
0.75 Intermediate Similarity NPC163087
0.75 Intermediate Similarity NPC150698
0.7488 Intermediate Similarity NPC314941
0.7486 Intermediate Similarity NPC213567
0.7486 Intermediate Similarity NPC469417
0.7473 Intermediate Similarity NPC251139
0.7473 Intermediate Similarity NPC66193
0.7472 Intermediate Similarity NPC94602
0.7471 Intermediate Similarity NPC472371
0.7471 Intermediate Similarity NPC472395
0.7463 Intermediate Similarity NPC315889
0.746 Intermediate Similarity NPC120667
0.746 Intermediate Similarity NPC278272
0.7444 Intermediate Similarity NPC31829
0.7443 Intermediate Similarity NPC472546
0.7435 Intermediate Similarity NPC469421
0.7419 Intermediate Similarity NPC253738
0.7419 Intermediate Similarity NPC55744
0.7416 Intermediate Similarity NPC473541
0.7413 Intermediate Similarity NPC42286
0.7409 Intermediate Similarity NPC475649
0.7407 Intermediate Similarity NPC469420
0.7401 Intermediate Similarity NPC473673
0.7401 Intermediate Similarity NPC246480
0.7401 Intermediate Similarity NPC139067
0.7401 Intermediate Similarity NPC475429
0.7401 Intermediate Similarity NPC177340
0.7401 Intermediate Similarity NPC270498
0.7401 Intermediate Similarity NPC191082
0.7401 Intermediate Similarity NPC477468
0.7401 Intermediate Similarity NPC147217
0.7399 Intermediate Similarity NPC475648
0.7394 Intermediate Similarity NPC61891
0.7386 Intermediate Similarity NPC87448
0.7386 Intermediate Similarity NPC472576
0.7386 Intermediate Similarity NPC224491
0.7386 Intermediate Similarity NPC291599
0.7386 Intermediate Similarity NPC41481

  Chemically structural similarity: II. Similar Clinical/Approved Drugs

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules.

●  The left chart: Distribution of similarity level between NPC181964 and all drugs/candidates.
●  The right table: Most similar clinical/approved drugs (Tc>=0.56 or Top200).

Similarity Score Similarity Level Drug ID Developmental Stage
1.0 High Similarity NPD8485 Approved
0.9831 High Similarity NPD8486 Clinical (unspecified phase)
0.9432 High Similarity NPD8361 Approved
0.9432 High Similarity NPD8435 Approved
0.9432 High Similarity NPD8360 Approved
0.9101 High Similarity NPD8424 Clinical (unspecified phase)
0.882 High Similarity NPD8368 Discontinued
0.8778 High Similarity NPD8407 Phase 2
0.8444 Intermediate Similarity NPD8470 Clinical (unspecified phase)
0.8283 Intermediate Similarity NPD8462 Phase 1
0.8119 Intermediate Similarity NPD8404 Phase 2
0.7617 Intermediate Similarity NPD8150 Discontinued
0.7561 Intermediate Similarity NPD7875 Clinical (unspecified phase)
0.7561 Intermediate Similarity NPD7874 Approved
0.7488 Intermediate Similarity NPD8320 Phase 1
0.7488 Intermediate Similarity NPD8319 Approved
0.7453 Intermediate Similarity NPD8155 Clinical (unspecified phase)
0.744 Intermediate Similarity NPD7801 Approved
0.7436 Intermediate Similarity NPD8434 Phase 2
0.7363 Intermediate Similarity NPD7699 Phase 2
0.7363 Intermediate Similarity NPD7700 Phase 2
0.73 Intermediate Similarity NPD6535 Approved
0.73 Intermediate Similarity NPD6534 Approved
0.726 Intermediate Similarity NPD8151 Discontinued
0.715 Intermediate Similarity NPD7799 Discontinued
0.715 Intermediate Similarity NPD7871 Phase 2
0.715 Intermediate Similarity NPD7870 Phase 2
0.7136 Intermediate Similarity NPD6823 Phase 2
0.7129 Intermediate Similarity NPD7701 Phase 2
0.7122 Intermediate Similarity NPD6778 Approved
0.7122 Intermediate Similarity NPD6779 Approved
0.7122 Intermediate Similarity NPD6780 Approved
0.7122 Intermediate Similarity NPD6776 Approved
0.7122 Intermediate Similarity NPD6777 Approved
0.7122 Intermediate Similarity NPD6782 Approved
0.7122 Intermediate Similarity NPD6781 Approved
0.7101 Intermediate Similarity NPD7696 Phase 3
0.7101 Intermediate Similarity NPD7698 Approved
0.7101 Intermediate Similarity NPD7435 Discontinued
0.7101 Intermediate Similarity NPD7697 Approved
0.7092 Intermediate Similarity NPD5030 Phase 2
0.7072 Intermediate Similarity NPD7274 Clinical (unspecified phase)
0.7056 Intermediate Similarity NPD5034 Approved
0.7056 Intermediate Similarity NPD36 Approved
0.7056 Intermediate Similarity NPD5026 Approved
0.7056 Intermediate Similarity NPD5028 Approved
0.7056 Intermediate Similarity NPD4955 Approved
0.7056 Intermediate Similarity NPD4954 Approved
0.7035 Intermediate Similarity NPD5036 Approved
0.7033 Intermediate Similarity NPD7236 Approved
0.7027 Intermediate Similarity NPD7239 Suspended
0.7 Intermediate Similarity NPD5037 Approved
0.7 Intermediate Similarity NPD5038 Approved
0.6957 Remote Similarity NPD8468 Phase 2
0.6954 Remote Similarity NPD3823 Discontinued
0.6946 Remote Similarity NPD7879 Clinical (unspecified phase)
0.6872 Remote Similarity NPD7211 Clinical (unspecified phase)
0.6857 Remote Similarity NPD7497 Discontinued
0.6816 Remote Similarity NPD8059 Phase 3
0.6816 Remote Similarity NPD8058 Clinical (unspecified phase)
0.6791 Remote Similarity NPD7783 Phase 2
0.6791 Remote Similarity NPD7782 Clinical (unspecified phase)
0.6774 Remote Similarity NPD8389 Clinical (unspecified phase)
0.6766 Remote Similarity NPD5035 Approved
0.6758 Remote Similarity NPD7702 Clinical (unspecified phase)
0.675 Remote Similarity NPD5029 Approved
0.675 Remote Similarity NPD5031 Approved
0.675 Remote Similarity NPD5027 Approved
0.6731 Remote Similarity NPD7282 Approved
0.6699 Remote Similarity NPD5968 Phase 3
0.6683 Remote Similarity NPD6836 Approved
0.6667 Remote Similarity NPD6212 Phase 3
0.6667 Remote Similarity NPD6213 Phase 3
0.6667 Remote Similarity NPD7907 Approved
0.6667 Remote Similarity NPD6214 Clinical (unspecified phase)
0.6618 Remote Similarity NPD8055 Clinical (unspecified phase)
0.6618 Remote Similarity NPD3819 Phase 2
0.6602 Remote Similarity NPD8397 Clinical (unspecified phase)
0.6598 Remote Similarity NPD7057 Phase 3
0.6598 Remote Similarity NPD7058 Phase 2
0.6588 Remote Similarity NPD7811 Phase 3
0.6588 Remote Similarity NPD7810 Phase 3
0.658 Remote Similarity NPD7972 Discontinued
0.6579 Remote Similarity NPD8067 Phase 3
0.6557 Remote Similarity NPD4914 Approved
0.6545 Remote Similarity NPD6591 Clinical (unspecified phase)
0.6538 Remote Similarity NPD8146 Phase 2
0.6533 Remote Similarity NPD7997 Clinical (unspecified phase)
0.6528 Remote Similarity NPD6973 Clinical (unspecified phase)
0.6524 Remote Similarity NPD6190 Approved
0.652 Remote Similarity NPD8312 Approved
0.652 Remote Similarity NPD8313 Approved
0.6518 Remote Similarity NPD8366 Approved
0.6509 Remote Similarity NPD8285 Discontinued
0.6509 Remote Similarity NPD7565 Approved
0.6502 Remote Similarity NPD4665 Approved
0.6497 Remote Similarity NPD6746 Phase 2
0.648 Remote Similarity NPD7075 Discontinued
0.6476 Remote Similarity NPD8491 Approved
0.6471 Remote Similarity NPD5032 Approved
0.6471 Remote Similarity NPD2575 Approved
0.646 Remote Similarity NPD5619 Clinical (unspecified phase)
0.6453 Remote Similarity NPD7993 Clinical (unspecified phase)
0.6432 Remote Similarity NPD5544 Approved
0.6429 Remote Similarity NPD7966 Clinical (unspecified phase)
0.6429 Remote Similarity NPD4111 Phase 1
0.6419 Remote Similarity NPD4387 Approved
0.6419 Remote Similarity NPD4386 Approved
0.6418 Remote Similarity NPD7473 Discontinued
0.641 Remote Similarity NPD7096 Clinical (unspecified phase)
0.641 Remote Similarity NPD7460 Discontinued
0.6402 Remote Similarity NPD3300 Phase 2
0.64 Remote Similarity NPD5242 Approved
0.6386 Remote Similarity NPD7177 Discontinued
0.6386 Remote Similarity NPD3751 Discontinued
0.6383 Remote Similarity NPD8166 Discontinued
0.6378 Remote Similarity NPD5402 Approved
0.6374 Remote Similarity NPD7715 Approved
0.6374 Remote Similarity NPD7714 Approved
0.6374 Remote Similarity NPD7713 Phase 3
0.6372 Remote Similarity NPD2494 Approved
0.6372 Remote Similarity NPD3452 Approved
0.6372 Remote Similarity NPD2493 Approved
0.6372 Remote Similarity NPD3450 Approved
0.6368 Remote Similarity NPD6168 Clinical (unspecified phase)
0.6368 Remote Similarity NPD7784 Clinical (unspecified phase)
0.6368 Remote Similarity NPD6167 Clinical (unspecified phase)
0.6368 Remote Similarity NPD6166 Phase 2
0.6359 Remote Similarity NPD3528 Clinical (unspecified phase)
0.6359 Remote Similarity NPD4582 Approved
0.6359 Remote Similarity NPD4583 Approved
0.6359 Remote Similarity NPD6801 Discontinued
0.6359 Remote Similarity NPD7029 Discontinued
0.6355 Remote Similarity NPD7804 Clinical (unspecified phase)
0.6355 Remote Similarity NPD5844 Phase 1
0.6351 Remote Similarity NPD4466 Phase 1
0.6348 Remote Similarity NPD7654 Discontinued
0.634 Remote Similarity NPD6599 Discontinued
0.6338 Remote Similarity NPD2973 Approved
0.6338 Remote Similarity NPD2975 Approved
0.6338 Remote Similarity NPD2974 Approved
0.6326 Remote Similarity NPD4580 Approved
0.6324 Remote Similarity NPD5441 Clinical (unspecified phase)
0.6323 Remote Similarity NPD7930 Approved
0.6313 Remote Similarity NPD4004 Approved
0.6313 Remote Similarity NPD4002 Approved
0.6311 Remote Similarity NPD7962 Phase 2
0.6308 Remote Similarity NPD6385 Approved
0.6308 Remote Similarity NPD6386 Approved
0.6301 Remote Similarity NPD7584 Approved
0.6301 Remote Similarity NPD7583 Approved
0.6296 Remote Similarity NPD4628 Phase 3
0.6296 Remote Similarity NPD3400 Discontinued
0.6291 Remote Similarity NPD7667 Clinical (unspecified phase)
0.6289 Remote Similarity NPD7458 Discontinued
0.6287 Remote Similarity NPD4575 Clinical (unspecified phase)
0.6284 Remote Similarity NPD7961 Discontinued
0.628 Remote Similarity NPD7546 Discontinued
0.6279 Remote Similarity NPD7237 Clinical (unspecified phase)
0.6273 Remote Similarity NPD7585 Approved
0.6271 Remote Similarity NPD6287 Discontinued
0.627 Remote Similarity NPD6817 Clinical (unspecified phase)
0.6269 Remote Similarity NPD7315 Approved
0.6269 Remote Similarity NPD3787 Discontinued
0.6269 Remote Similarity NPD6232 Discontinued
0.6267 Remote Similarity NPD3057 Approved
0.6264 Remote Similarity NPD7008 Discontinued
0.6264 Remote Similarity NPD5952 Clinical (unspecified phase)
0.6263 Remote Similarity NPD4868 Clinical (unspecified phase)
0.6262 Remote Similarity NPD7038 Approved
0.6262 Remote Similarity NPD7039 Approved
0.6262 Remote Similarity NPD8014 Clinical (unspecified phase)
0.6256 Remote Similarity NPD6502 Phase 2
0.6256 Remote Similarity NPD7999 Approved
0.6256 Remote Similarity NPD3808 Clinical (unspecified phase)
0.6256 Remote Similarity NPD4380 Phase 2
0.6244 Remote Similarity NPD4413 Clinical (unspecified phase)
0.6244 Remote Similarity NPD7819 Suspended
0.624 Remote Similarity NPD8367 Approved
0.6238 Remote Similarity NPD7693 Approved
0.6233 Remote Similarity NPD4974 Approved
0.6233 Remote Similarity NPD4975 Approved
0.6232 Remote Similarity NPD7808 Phase 3
0.6232 Remote Similarity NPD4419 Clinical (unspecified phase)
0.6232 Remote Similarity NPD4338 Clinical (unspecified phase)
0.6231 Remote Similarity NPD8005 Clinical (unspecified phase)
0.6229 Remote Similarity NPD7048 Phase 3
0.6224 Remote Similarity NPD7615 Clinical (unspecified phase)
0.6219 Remote Similarity NPD8127 Discontinued
0.6214 Remote Similarity NPD7959 Clinical (unspecified phase)
0.6212 Remote Similarity NPD3817 Phase 2
0.6212 Remote Similarity NPD8443 Clinical (unspecified phase)
0.6209 Remote Similarity NPD5202 Clinical (unspecified phase)
0.6207 Remote Similarity NPD6894 Phase 1
0.6207 Remote Similarity NPD7852 Clinical (unspecified phase)
0.6205 Remote Similarity NPD3455 Phase 2
0.6204 Remote Similarity NPD8492 Approved
0.6204 Remote Similarity NPD5608 Approved
0.6204 Remote Similarity NPD6874 Approved
0.6204 Remote Similarity NPD5609 Approved

  Bioactivity similarity: Similar Natural Products in NPASS

Bioactivity similarity was calculated based on bioactivity descriptors of compounds. The bioactivity descriptors were calculated by a recently developed AI algorithm Chemical Checker (CC) [Nature Biotechnology, 38:1087–1096, 2020; Nature Communications, 12:3932, 2021], which evaluated bioactivity similarities at five levels:
A: chemistry similarity;
B: biological targets similarity;
C: networks similarity;
D: cell-based bioactivity similarity;
E: similarity based on clinical data.

Those 5 categories of CC bioactivity descriptors were calculated and then subjected to manifold projection using UMAP algorithm, to project all NPs on a 2-Dimensional space. The current NP was highlighted with a small circle in the 2-D map. Below figures: left-to-right, A-to-E.

A: chemistry similarity
B: biological targets similarity
C: networks similarity
D: cell-based bioactivity similarity
E: similarity based on clinical data