Natural Product: NPC63159

Natural Product IDNPC63159
Common Name
?
The InCHIKey will be temporarily assigned as the "Common Name" if no IUPAC name or alternative short name is available.
FNNMEJXCIARVCO-WGCVIKQWSA-N
IUPAC Name n.a.
Synonyms
Synthetic Gene Cluster n.a.
ChEMBL Identifier n.a.
PubChem CID 101623720
Chemical Classification
  • CHEMONTID:0000000 [Organic compounds]
    • [CHEMONTID:0000012] Lipids and lipid-like molecules
      • [CHEMONTID:0000259] Prenol lipids
        • [CHEMONTID:0002049] Terpene glycosides
          • [CHEMONTID:0001580] Triterpene glycosides
            • [CHEMONTID:0002358] Triterpene saponins

The Chemical Classification was calculated by Classyfire, a software for chemical taxonomy calculation. Reference: DOI:10.1186/s13321-016-0174-y.

  Chemical Representations

Standard InCHIKey FNNMEJXCIARVCO-WGCVIKQWSA-N
Standard InCHI InChI=1S/C53H86O22/c1-48(2)14-16-53(47(67)75-45-41(66)38(63)35(60)28(72-45)22-69-43-39(64)36(61)33(58)26(19-54)70-43)17-15-51(6)23(24(53)18-48)8-9-30-50(5)12-11-31(49(3,4)29(50)10-13-52(30,51)7)73-46-42(32(57)25(56)21-68-46)74-44-40(65)37(62)34(59)27(20-55)71-44/h8,24-46,54-66H,9-22H2,1-7H3/t24-,25-,26+,27+,28+,29-,30+,31-,32-,33+,34+,35+,36-,37-,38-,39+,40+,41+,42+,43+,44-,45-,46-,50-,51+,52+,53-/m0/s1
SMILES CC1(C)CC[C@@]2(CC[C@]3(C)C(=CC[C@@H]4[C@@]5(C)CC[C@@H](C(C)(C)[C@@H]5CC[C@@]34C)O[C@H]3[C@@H]([C@H]([C@H](CO3)O)O)O[C@H]3[C@@H]([C@H]([C@@H]([C@@H](CO)O3)O)O)O)[C@@H]2C1)C(=O)O[C@H]1[C@@H]([C@H]([C@@H]([C@@H](CO[C@H]2[C@@H]([C@H]([C@@H]([C@@H](CO)O2)O)O)O)O1)O)O)O

  Calculated Properties

Physi-Chem Properties

Molecular Weight:   1074.56 Volume:   1036.348
?
Van der Waals volume.
Dense:   1.037 LogP:   0.955
?
The logarithm of the n-octanol/water distribution coefficients.
logD7.4:   1.881
?
The logarithm of the n-octanol/water distribution coefficient at pH=7.4.
LogS:   -4.198
?
The logarithm of aqueous solubility value.
Rotatable Bonds:   12.0 Rigid Bonds:   51.0
TPSA:   353.9
?
Topological Polar Surface Area.
H-Bond Acceptor:   22.0
H-Bond Donor:   13.0 Rings:   9.0
Heavy Atoms:   22.0

MedChem Properties

QED Drug-Likeness Score:   0.064 GASA:   1.0
?
GASA represents the probability of being difficult to synthesize, ranging from 0 to 1.
Synthetic Accessibility Score:   6.709 Fsp3:   0.943
MCE-18:   194.369
?
MCE-18 stands for medicinal chemistry evolution.MCE-18≥45 is considered a suitable value.
Lipinski Rule-of-5:   Accepted
Pfizer Rule:   Rejected GSK Rule:   Accepted
Golden Triangle Rule:   Accepted BMS Rule:   1
Chelating Alert:   0 PAINS Alert:   0
Colloidal aggregators:   0.833 Fluc inhibitor:   0.0
?
The fluc inhibitor value is the probability of being fLuc inhibitors, within the range of 0 to 1.
Blue fluorescence:   0.012
?
The blue fluorescence value is the probability of being blue fluorescence, within the range of 0 to 1
Green fluorescence:   0.0
?
The green fluorescence value is the probability of being green fluorescence, within the range of 0 to 1
Reactive compounds:   0.216 Promiscuous compounds:   0.06

ADMET Properties (ADMETlab3.0)

ADMET: Absorption

Caco-2 Permeability:   -6.504 MDCK Permeability:   -5.079
Pgp-inhibitor:   0.0 Pgp-substrate:   0.032
PAMPA:   1.0
?
The experimental data for Peff was logarithmically transformed (logPeff). Molecules with log Peff values below 2.0 were classified as low-permeability (Category 0), while those with log Peff values exceeding 2.5 were classified as high-permeability (Category 1).
Human Intestinal Absorption (HIA):   0.961
20% Bioavailability (F20%):   0.461 30% Bioavailability (F30%):   1.0
50% Bioavailability (F50%):   1.0

ADMET: Distribution

Blood-Brain-Barrier Penetration (BBB):   0.055 MRP1:   0.011
Plasma Protein Binding (PPB):   65.207% Volume Distribution (VD):   -0.392
Fu: 21.017%
?
The fraction unbound in plasms.
OATP1B1 inhibitor:   1.0
OATP1B3 inhibitor:   1.0 BCRP inhibitor:   0.0
BSEP inhibitor:   0.0

ADMET: Metabolism

CYP1A2-inhibitor:   0.0 CYP1A2-substrate:   0.0
CYP2C19-inhibitor:   0.001 CYP2C19-substrate:   0.0
CYP2C9-inhibitor:   0.0 CYP2C9-substrate:   0.0
CYP2D6-inhibitor:   0.0 CYP2D6-substrate:   0.0
CYP3A4-inhibitor:   0.005 CYP3A4-substrate:   0.0
CYP2B6-substrate:   0.0 CYP2C8-inhibitor:   0.307
HLM stability:   0.004
?
Human liver microsomal (HLM) stability. Category 0: stable+ (HLM > 30 min); Category 1: unstable- (HLM ≤ 30 min). The output value is the probability of human liver microsomal instability, where a value closer to 1 indicates a higher likelihood of instability.

ADMET: Excretion

Clearance (CL):  -0.41 Half-life (T1/2):  3.654

ADMET: Toxicity

hERG Blockers:  0.001 hERG Blockers (10um):  0.002
Human Hepatotoxicity (H-HT):  0.755 Drug-induced Liver Injury (DILI):  0.941
AMES Toxicity:  0.99 Rat Oral Acute Toxicity:  0.0
Maximum Recommended Daily Dose:  0.0 Skin Sensitization:  1.0
Carcinogencity:  0.041 Eye Corrosion:  0.0
Eye Irritation:  0.0 Respiratory Toxicity:  0.0
Drug-induced Neurotoxicity:  0.0 Ototoxicity:  1.0
Hematotoxicity:  0.7 Drug-induced Nephrotoxicity:  0.998
Genotoxicity:  0.435 RPMI-8226 Immunitoxicity:  0.284
A549 Cytotoxicity:  0.926 Hek293 Cytotoxicity:  0.382
BCF:   1.583
?
Bioconcentration factors are used for considering secondary poisoning potential and assessing risks to human health via the food chain. The unit is -log10[(mg/L)/(1000*MW)].
IGC50:   3.626
?
48 hour Tetrahymena pyriformis IGC50. The unit of IGC50 is -log10[(mg/L)/(1000*MW)].
LC50DM:   5.093
?
48 hour Daphnia magna LC50. The unit of LC50DM is -log10[(mg/L)/(1000*MW)].
LC50FM:   4.272
?
96 hour fathead minnow LC50. The unit of LC50FM is -log10[(mg/L)/(1000*MW)].

  Species Source

Organism ID Organism Name Taxonomy Level Family SuperKingdom Isolation Part Collection Location Collection Time Reference
NPO1515 Lonicera japonica Species Caprifoliaceae Eukaryota Flowers n.a. n.a. DOI[10.1002/elan.200403102]
NPO1515 Lonicera japonica Species Caprifoliaceae Eukaryota Flowers n.a. n.a. DOI[10.1016/j.foodchem.2012.02.124]
NPO1515 Lonicera japonica Species Caprifoliaceae Eukaryota Flowers n.a. n.a. PMID[11077184]
NPO6092 Symphyocladia latiuscula Species Rhodomelaceae Eukaryota n.a. n.a. n.a. PMID[11141124]
NPO3699 Acacia aulacocarpa Species Fabaceae Eukaryota n.a. leaf n.a. PMID[11735581]
NPO6092 Symphyocladia latiuscula Species Rhodomelaceae Eukaryota n.a. n.a. n.a. PMID[15844965]
NPO1515 Lonicera japonica Species Caprifoliaceae Eukaryota Flowers n.a. n.a. PMID[17328234]
NPO6092 Symphyocladia latiuscula Species Rhodomelaceae Eukaryota n.a. n.a. n.a. PMID[17602526]
NPO1515 Lonicera japonica Species Caprifoliaceae Eukaryota Flower buds n.a. n.a. PMID[18321056]
NPO1515 Lonicera japonica Species Caprifoliaceae Eukaryota n.a. flower n.a. PMID[21804227]
NPO1515 Lonicera japonica Species Caprifoliaceae Eukaryota n.a. flower bud n.a. PMID[21942812]
NPO1515 Lonicera japonica Species Caprifoliaceae Eukaryota flower buds Henan province, China 2005-MAY PMID[21942812]
NPO1515 Lonicera japonica Species Caprifoliaceae Eukaryota n.a. leaf n.a. PMID[23265495]
NPO1515 Lonicera japonica Species Caprifoliaceae Eukaryota Flower buds n.a. n.a. PMID[24279769]
NPO8622 Stauntonia hexaphylla Species Lardizabalaceae Eukaryota Fruits n.a. n.a. PMID[31301930]
NPO8622 Stauntonia hexaphylla Species Lardizabalaceae Eukaryota n.a. n.a. n.a. Database[Article]
NPO8418 Anemone flaccida Species Ranunculaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO3699 Acacia aulacocarpa Species Fabaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO1515 Lonicera japonica Species Caprifoliaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO8622 Stauntonia hexaphylla Species Lardizabalaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO6092 Symphyocladia latiuscula Species Rhodomelaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO3597 Rheedia acuminata Species Clusiaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO4823 Psiadia dentata Species Asteraceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO5155 Peritassa compta Species Celastraceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO19948 Neolentinus lepideus Species Gloeophyllaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO6729 Juniperus brevifolia Species Cupressaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO7569 Guatteria boliviana Species Annonaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO5196 Eupatorium argentinum Species Asteraceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO6237 Cryptocarya aschersoniana Species Lauraceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO3853 Aspidosperma subincanum Species Apocynaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO471 Ardisia neriifolia Species Primulaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO8622 Stauntonia hexaphylla Species Lardizabalaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO3853 Aspidosperma subincanum Species Apocynaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO1515 Lonicera japonica Species Caprifoliaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO19948 Neolentinus lepideus Species Gloeophyllaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO8622 Stauntonia hexaphylla Species Lardizabalaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO3853 Aspidosperma subincanum Species Apocynaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO1515 Lonicera japonica Species Caprifoliaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO4823 Psiadia dentata Species Asteraceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO8418 Anemone flaccida Species Ranunculaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO7569 Guatteria boliviana Species Annonaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO1515 Lonicera japonica Species Caprifoliaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO1515 Lonicera japonica Species Caprifoliaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO6092 Symphyocladia latiuscula Species Rhodomelaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO3597 Rheedia acuminata Species Clusiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO471 Ardisia neriifolia Species Primulaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO8622 Stauntonia hexaphylla Species Lardizabalaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO3699 Acacia aulacocarpa Species Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO7569 Guatteria boliviana Species Annonaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO5196 Eupatorium argentinum Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO5155 Peritassa compta Species Celastraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO8418 Anemone flaccida Species Ranunculaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO19948 Neolentinus lepideus Species Gloeophyllaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO1515 Lonicera japonica Species Caprifoliaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO4823 Psiadia dentata Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO6237 Cryptocarya aschersoniana Species Lauraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO3853 Aspidosperma subincanum Species Apocynaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO6729 Juniperus brevifolia Species Cupressaceae Eukaryota n.a. n.a. n.a. Database[UNPD]

Note for Reference:
In addition to directly collecting NP source organism data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated them from below databases:
UNPD: Universal Natural Products Database [PMID: 23638153].
StreptomeDB: a database of streptomycetes natural products [PMID: 33051671].
TM-MC: a database of medicinal materials and chemical compounds in Northeast Asian traditional medicine [PMID: 26156871].
TCM@Taiwan: a Traditional Chinese Medicine database [PMID: 21253603].
TCMID: a Traditional Chinese Medicine database [PMID: 29106634].
TCMSP: The traditional Chinese medicine systems pharmacology database and analysis platform [PMID: 24735618].
HerDing: a herb recommendation system to treat diseases using genes and chemicals [PMID: 26980517].
MetaboLights: a metabolomics database [PMID: 27010336].
FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].



  NP Quantity Composition/Concentration

Organism ID Organism Name Organism Material Preparation Organism Part NP Quantity (Standard) NP Quantity (Minimum) NP Quantity (Maximum) Quantity Unit Reference

Note for Reference:
In addition to directly collecting NP quantitative data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated NP quantitative records for specific NP domains (e.g., NPS from foods or herbs) from domain-specific databases. These databases include:
DUKE: Dr. Duke's Phytochemical and Ethnobotanical Databases.
PHENOL EXPLORER: is the first comprehensive database on polyphenol content in foods [PMID: 24103452], its homepage can be accessed at here.
FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].



 Biological Activity

Molecular-level activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference

In vitro activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference
NPT113 Cell line RAW264.7 Mus musculus IC50 > 50000.0 nM PMID[31301930]
NPT113 Cell line RAW264.7 Mus musculus IC50 > 50000.0 nM PMID[30808589]

In vivo activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference





 Experimental ADME

Experiment Model Experiment Tissue ADME Type ADME Relation ADME Value ADME Unit Reference





 Experimental Toxicity

Quantitative toxicity

Experiment Model Experiment Organism Toxicity Type Toxicity Relation Toxicity Value Toxicity Unit Reference

Common Abbreviations:
LC: Lethal Concentration; LD: Lethal Dose; LT:Lethal Time; NOAEL: No-observed-adverse-effect Level; BMDL: Benchmark Dose Lower Confidence Limit; BMD: Benchmark Dose; BMC:Benchmark Concentration; LOAEL: Lowest Observed Adverse Effect Level; RfD:Reference Dose; RfC:Reference Concentration; MRL: Minimal Risk Level; MEG: Maximum Exposure Guideline; PAC: Protective Action Criteria

Categorical toxicity labels

Hepatotoxicity Carcinogenicity Mutagenicity Cardiotoxicity Respiratory Toxicity Eye Irritation Endocrine Disruption
Hepatotoxicity Carcinogenicity Mutagenicity Cardiotoxicity Respiratory Toxicity Eye Irritation Endocrine Disruption

Note for Reference:
In addition to directly collecting NP quantitative data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated NP toxicity records from domain-specific databases. These databases include:
ToxValDB: a curated database that compiles quantitative toxicity values for chemicals from diverse public sources to support toxicological research and risk assessment.
TOXRIC: a comprehensive, free-to-access, online database providing toxicological/feature data. The toxicity labels are retrieved from this database. [PMID: 36400569]


  Chemically structural similarity

Similar Active Natural Products in NPASS

Top-200 similar NPs were calculated against the active-NP-set (includes approximately 50,000 NPs with experimentally-derived bioactivity available in NPASS)

Similarity is measured using the Tanimoto coefficient (Tc) , which compares the binary fingerprints of two molecules. Tc is calculated as the intersection divided by the union of '1' bits in the fingerprints, ranging from 0 to 1, with 1 indicating highest similarity.

●  The left chart: Distribution of similarity level between NPC63159 and all remaining natural products in the NPASS database.
●  The right table: Most similar natural products (Tc>=0.5 or Top200).

Similarity Score Similarity Level Natural Product ID
0.899 High Similarity NPC79643
0.8817 High Similarity NPC112352
0.8812 High Similarity NPC135904
0.8778 High Similarity NPC48499
0.8627 High Similarity NPC123199
0.8515 High Similarity NPC60557
0.8515 High Similarity NPC67857
0.8318 Intermediate Similarity NPC41061
0.8318 Intermediate Similarity NPC227551
0.8165 Intermediate Similarity NPC305981
0.8125 Intermediate Similarity NPC469946
0.8091 Intermediate Similarity NPC261506
0.8091 Intermediate Similarity NPC4328
0.8039 Intermediate Similarity NPC481078
0.7879 Intermediate Similarity NPC480475
0.7843 Intermediate Similarity NPC481079
0.7835 Intermediate Similarity NPC295371
0.781 Intermediate Similarity NPC76972
0.781 Intermediate Similarity NPC469782
0.781 Intermediate Similarity NPC204414
0.7723 Intermediate Similarity NPC297263
0.7685 Intermediate Similarity NPC470218
0.7679 Intermediate Similarity NPC236638
0.7679 Intermediate Similarity NPC294453
0.7549 Intermediate Similarity NPC222580
0.7525 Intermediate Similarity NPC251768
0.7524 Intermediate Similarity NPC31838
0.7522 Intermediate Similarity NPC481081
0.75 Intermediate Similarity NPC301449
0.75 Intermediate Similarity NPC601290
0.7456 Intermediate Similarity NPC298034
0.7456 Intermediate Similarity NPC71065
0.7434 Intermediate Similarity NPC43550
0.7429 Intermediate Similarity NPC295823
0.7429 Intermediate Similarity NPC174720
0.7429 Intermediate Similarity NPC475467
0.7414 Intermediate Similarity NPC250247
0.7353 Intermediate Similarity NPC46665
0.7345 Intermediate Similarity NPC258617
0.7339 Intermediate Similarity NPC165204
0.7327 Intermediate Similarity NPC192791
0.732 Intermediate Similarity NPC29069
0.7281 Intermediate Similarity NPC293330
0.7255 Intermediate Similarity NPC160415
0.7232 Intermediate Similarity NPC481080
0.7216 Intermediate Similarity NPC214484
0.7196 Intermediate Similarity NPC187290
0.7156 Intermediate Similarity NPC475287
0.7129 Intermediate Similarity NPC39211
0.7115 Intermediate Similarity NPC475591
0.7115 Intermediate Similarity NPC236870
0.7103 Intermediate Similarity NPC480473
0.7103 Intermediate Similarity NPC480474
0.71 Intermediate Similarity NPC475516
0.7094 Intermediate Similarity NPC70809
0.7069 Intermediate Similarity NPC202828
0.7069 Intermediate Similarity NPC119592
0.7054 Intermediate Similarity NPC475160
0.7054 Intermediate Similarity NPC100639
0.7054 Intermediate Similarity NPC473714
0.7048 Intermediate Similarity NPC475504
0.7041 Intermediate Similarity NPC90856
0.7019 Intermediate Similarity NPC10607
0.7018 Intermediate Similarity NPC57484
0.6944 Remote Similarity NPC80986
0.6931 Remote Similarity NPC235405
0.6923 Remote Similarity NPC309714
0.6891 Remote Similarity NPC220160
0.6863 Remote Similarity NPC473373
0.6863 Remote Similarity NPC249848
0.6863 Remote Similarity NPC107966
0.6842 Remote Similarity NPC488560
0.6838 Remote Similarity NPC65105
0.6827 Remote Similarity NPC223301
0.6827 Remote Similarity NPC171544
0.6792 Remote Similarity NPC235438
0.6789 Remote Similarity NPC241909
0.6762 Remote Similarity NPC30735
0.6759 Remote Similarity NPC104372
0.6724 Remote Similarity NPC476068
0.6698 Remote Similarity NPC164389
0.6698 Remote Similarity NPC488526
0.6698 Remote Similarity NPC473459
0.6667 Remote Similarity NPC110633
0.6667 Remote Similarity NPC155410
0.6635 Remote Similarity NPC470512
0.6635 Remote Similarity NPC157868
0.6612 Remote Similarity NPC224381
0.6609 Remote Similarity NPC283417
0.6609 Remote Similarity NPC200049
0.6571 Remote Similarity NPC263756
0.6566 Remote Similarity NPC128925
0.6542 Remote Similarity NPC40775
0.6542 Remote Similarity NPC159309
0.6542 Remote Similarity NPC86222
0.6526 Remote Similarity NPC167383
0.6481 Remote Similarity NPC148417
0.6449 Remote Similarity NPC104071
0.6429 Remote Similarity NPC104137
0.6429 Remote Similarity NPC26626
0.6415 Remote Similarity NPC473343
0.6415 Remote Similarity NPC213674
0.64 Remote Similarity NPC480422
0.6392 Remote Similarity NPC237503
0.6389 Remote Similarity NPC102439
0.6389 Remote Similarity NPC173859
0.6389 Remote Similarity NPC148603
0.6387 Remote Similarity NPC480418
0.6381 Remote Similarity NPC127056
0.6379 Remote Similarity NPC480419
0.6373 Remote Similarity NPC204458
0.6364 Remote Similarity NPC136768
0.6325 Remote Similarity NPC191827
0.6311 Remote Similarity NPC1046
0.6311 Remote Similarity NPC78046
0.6306 Remote Similarity NPC281148
0.6306 Remote Similarity NPC114484
0.6286 Remote Similarity NPC469778
0.6262 Remote Similarity NPC161674
0.6239 Remote Similarity NPC219180
0.6232 Remote Similarity NPC469776
0.6226 Remote Similarity NPC150400
0.6218 Remote Similarity NPC4749
0.6216 Remote Similarity NPC64715
0.6214 Remote Similarity NPC32723
0.6207 Remote Similarity NPC192600
0.6186 Remote Similarity NPC471550
0.6176 Remote Similarity NPC209894
0.617 Remote Similarity NPC481323
0.6167 Remote Similarity NPC21691
0.6126 Remote Similarity NPC470514
0.6126 Remote Similarity NPC470513
0.6111 Remote Similarity NPC80843
0.6096 Remote Similarity NPC295941
0.6091 Remote Similarity NPC305267
0.6091 Remote Similarity NPC232237
0.6084 Remote Similarity NPC135334
0.6042 Remote Similarity NPC481324
0.6036 Remote Similarity NPC68175
0.6034 Remote Similarity NPC185466
0.6019 Remote Similarity NPC473884
0.6 Remote Similarity NPC109588
0.6 Remote Similarity NPC207738
0.6 Remote Similarity NPC117714
0.5984 Remote Similarity NPC13998
0.5982 Remote Similarity NPC609763
0.5981 Remote Similarity NPC139894
0.597 Remote Similarity NPC472268
0.5969 Remote Similarity NPC33012
0.595 Remote Similarity NPC85154
0.5948 Remote Similarity NPC75287
0.5948 Remote Similarity NPC470915
0.5946 Remote Similarity NPC104400
0.5946 Remote Similarity NPC10320
0.5926 Remote Similarity NPC173583
0.5922 Remote Similarity NPC256798
0.5909 Remote Similarity NPC242840
0.5909 Remote Similarity NPC489208
0.5897 Remote Similarity NPC288205
0.5897 Remote Similarity NPC51465
0.5896 Remote Similarity NPC297950
0.5891 Remote Similarity NPC8524
0.5862 Remote Similarity NPC36831
0.5856 Remote Similarity NPC30289
0.5854 Remote Similarity NPC286457
0.5847 Remote Similarity NPC268184
0.5847 Remote Similarity NPC610204
0.5833 Remote Similarity NPC475209
0.5833 Remote Similarity NPC59804
0.5826 Remote Similarity NPC324875
0.5826 Remote Similarity NPC292677
0.5789 Remote Similarity NPC488515
0.5782 Remote Similarity NPC469777
0.578 Remote Similarity NPC58448
0.578 Remote Similarity NPC480420
0.5776 Remote Similarity NPC187618
0.5775 Remote Similarity NPC469775
0.5764 Remote Similarity NPC469774
0.5755 Remote Similarity NPC189884
0.5755 Remote Similarity NPC138334
0.5752 Remote Similarity NPC105800
0.5752 Remote Similarity NPC470515
0.575 Remote Similarity NPC475899
0.575 Remote Similarity NPC470911
0.5736 Remote Similarity NPC480417
0.5702 Remote Similarity NPC257468
0.5692 Remote Similarity NPC489209
0.5688 Remote Similarity NPC56713
0.568 Remote Similarity NPC475514
0.5667 Remote Similarity NPC123522
0.5667 Remote Similarity NPC469772
0.5652 Remote Similarity NPC471435
0.5652 Remote Similarity NPC471434
0.5646 Remote Similarity NPC100925
0.5635 Remote Similarity NPC161717
0.563 Remote Similarity NPC475119
0.5615 Remote Similarity NPC102505
0.5615 Remote Similarity NPC488514
0.56 Remote Similarity NPC265841

Similar Clinical/Approved Drugs

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules.

●  The left chart: Distribution of similarity level between NPC63159 and all drugs/candidates.
●  The right table: Most similar clinical/approved drugs (Tc>=0.5 or Top200).

Similarity Score Similarity Level Drug ID Developmental Stage
NPD

Bioactivity similarity

  Bioactivity similarity

Similar Natural Products in NPASS

Similarity level is defined by Bioactivity similarity was calculated based on bioactivity descriptors of compounds. The bioactivity descriptors were calculated by a recently developed AI algorithm Chemical Checker (CC) [Nature Biotechnology, 38:1087–1096, 2020; Nature Communications, 12:3932, 2021], which evaluated bioactivity similarities at five levels:
A: chemistry similarity;
B: biological targets similarity;
C: networks similarity;
D: cell-based bioactivity similarity;
E: similarity based on clinical data.
Those 5 categories of CC bioactivity descriptors were calculated and then subjected to manifold projection using UMAP algorithm, to project all NPs on a 2-Dimensional space. The current NP was highlighted with a small circle in the 2-D map. Below figures: left-to-right, A-to-E.

A: chemistry similarity
B: biological targets similarity
C: networks similarity
D: cell-based bioactivity similarity
E: similarity based on clinical data