Natural Product: NPC610204

The Chemical Classification was calculated by Classyfire, a software for chemical taxonomy calculation. Reference: DOI:10.1186/s13321-016-0174-y.

  Chemical Representations

  Calculated Properties

Physi-Chem Properties

MedChem Properties

ADMET Properties (ADMETlab3.0)

ADMET: Absorption

ADMET: Distribution

ADMET: Metabolism

ADMET: Excretion

ADMET: Toxicity

  Species Source

Organism ID Organism Name Taxonomy Level Family SuperKingdom Isolation Part Collection Location Collection Time Reference

Note for Reference:
In addition to directly collecting NP source organism data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated them from below databases:
UNPD: Universal Natural Products Database [PMID: 23638153].
StreptomeDB: a database of streptomycetes natural products [PMID: 33051671].
TM-MC: a database of medicinal materials and chemical compounds in Northeast Asian traditional medicine [PMID: 26156871].
TCM@Taiwan: a Traditional Chinese Medicine database [PMID: 21253603].
TCMID: a Traditional Chinese Medicine database [PMID: 29106634].
TCMSP: The traditional Chinese medicine systems pharmacology database and analysis platform [PMID: 24735618].
HerDing: a herb recommendation system to treat diseases using genes and chemicals [PMID: 26980517].
MetaboLights: a metabolomics database [PMID: 27010336].
FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].



  NP Quantity Composition/Concentration

Organism ID Organism Name Organism Material Preparation Organism Part NP Quantity (Standard) NP Quantity (Minimum) NP Quantity (Maximum) Quantity Unit Reference

Note for Reference:
In addition to directly collecting NP quantitative data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated NP quantitative records for specific NP domains (e.g., NPS from foods or herbs) from domain-specific databases. These databases include:
DUKE: Dr. Duke's Phytochemical and Ethnobotanical Databases.
PHENOL EXPLORER: is the first comprehensive database on polyphenol content in foods [PMID: 24103452], its homepage can be accessed at here.
FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].



 Biological Activity

Molecular-level activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference

In vitro activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference

In vivo activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference





 Experimental ADME

Experiment Model Experiment Tissue ADME Type ADME Relation ADME Value ADME Unit Reference





 Experimental Toxicity

Quantitative toxicity

Experiment Model Experiment Organism Toxicity Type Toxicity Relation Toxicity Value Toxicity Unit Reference

Common Abbreviations:
LC: Lethal Concentration; LD: Lethal Dose; LT:Lethal Time; NOAEL: No-observed-adverse-effect Level; BMDL: Benchmark Dose Lower Confidence Limit; BMD: Benchmark Dose; BMC:Benchmark Concentration; LOAEL: Lowest Observed Adverse Effect Level; RfD:Reference Dose; RfC:Reference Concentration; MRL: Minimal Risk Level; MEG: Maximum Exposure Guideline; PAC: Protective Action Criteria

Categorical toxicity labels

Hepatotoxicity Carcinogenicity Mutagenicity Cardiotoxicity Respiratory Toxicity Eye Irritation Endocrine Disruption
Hepatotoxicity Carcinogenicity Mutagenicity Cardiotoxicity Respiratory Toxicity Eye Irritation Endocrine Disruption

Note for Reference:
In addition to directly collecting NP quantitative data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated NP toxicity records from domain-specific databases. These databases include:
ToxValDB: a curated database that compiles quantitative toxicity values for chemicals from diverse public sources to support toxicological research and risk assessment.
TOXRIC: a comprehensive, free-to-access, online database providing toxicological/feature data. The toxicity labels are retrieved from this database. [PMID: 36400569]


  Chemically structural similarity

Similar Active Natural Products in NPASS

Top-200 similar NPs were calculated against the active-NP-set (includes approximately 50,000 NPs with experimentally-derived bioactivity available in NPASS)

Similarity is measured using the Tanimoto coefficient (Tc) , which compares the binary fingerprints of two molecules. Tc is calculated as the intersection divided by the union of '1' bits in the fingerprints, ranging from 0 to 1, with 1 indicating highest similarity.

●  The left chart: Distribution of similarity level between NPC610204 and all remaining natural products in the NPASS database.
●  The right table: Most similar natural products (Tc>=0.5 or Top200).

Similarity Score Similarity Level Natural Product ID
0.8491 Intermediate Similarity NPC610461
0.8208 Intermediate Similarity NPC609281
0.7685 Intermediate Similarity NPC606145
0.75 Intermediate Similarity NPC607904
0.7456 Intermediate Similarity NPC603137
0.7321 Intermediate Similarity NPC606553
0.6957 Remote Similarity NPC185466
0.6864 Remote Similarity NPC609305
0.6786 Remote Similarity NPC123796
0.6783 Remote Similarity NPC207738
0.6667 Remote Similarity NPC475140
0.6486 Remote Similarity NPC469946
0.6452 Remote Similarity NPC265841
0.6281 Remote Similarity NPC151543
0.6186 Remote Similarity NPC481079
0.6167 Remote Similarity NPC471375
0.6154 Remote Similarity NPC471435
0.6154 Remote Similarity NPC471434
0.6142 Remote Similarity NPC470876
0.6121 Remote Similarity NPC105800
0.6102 Remote Similarity NPC78034
0.6091 Remote Similarity NPC1046
0.6048 Remote Similarity NPC166422
0.6045 Remote Similarity NPC33012
0.6016 Remote Similarity NPC123522
0.597 Remote Similarity NPC8524
0.5969 Remote Similarity NPC484059
0.5969 Remote Similarity NPC484060
0.5968 Remote Similarity NPC471384
0.595 Remote Similarity NPC104137
0.595 Remote Similarity NPC26626
0.5948 Remote Similarity NPC30289
0.5935 Remote Similarity NPC473824
0.5932 Remote Similarity NPC297263
0.5913 Remote Similarity NPC213674
0.5897 Remote Similarity NPC164389
0.5897 Remote Similarity NPC488526
0.5897 Remote Similarity NPC232237
0.5891 Remote Similarity NPC271610
0.5891 Remote Similarity NPC312650
0.5865 Remote Similarity NPC250247
0.5854 Remote Similarity NPC475119
0.5854 Remote Similarity NPC288205
0.5854 Remote Similarity NPC51465
0.5854 Remote Similarity NPC51579
0.5847 Remote Similarity NPC63159
0.5846 Remote Similarity NPC476779
0.5833 Remote Similarity NPC77717
0.5826 Remote Similarity NPC488561
0.582 Remote Similarity NPC31838
0.582 Remote Similarity NPC481078
0.5814 Remote Similarity NPC488308
0.5794 Remote Similarity NPC123199
0.5789 Remote Similarity NPC484063
0.5789 Remote Similarity NPC484064
0.5789 Remote Similarity NPC482010
0.5785 Remote Similarity NPC291903
0.5781 Remote Similarity NPC71391
0.5772 Remote Similarity NPC471374
0.5763 Remote Similarity NPC480475
0.5748 Remote Similarity NPC283417
0.5748 Remote Similarity NPC200049
0.5736 Remote Similarity NPC484061
0.5736 Remote Similarity NPC484062
0.5726 Remote Similarity NPC172365
0.5691 Remote Similarity NPC138219
0.5691 Remote Similarity NPC475234
0.569 Remote Similarity NPC470512
0.5678 Remote Similarity NPC117714
0.5667 Remote Similarity NPC257468
0.5641 Remote Similarity NPC263756
0.5635 Remote Similarity NPC79643
0.563 Remote Similarity NPC148603
0.5625 Remote Similarity NPC602995
0.562 Remote Similarity NPC302887
0.561 Remote Similarity NPC470477
0.561 Remote Similarity NPC69811
0.5593 Remote Similarity NPC112352
0.5591 Remote Similarity NPC323341
0.5575 Remote Similarity NPC90856
0.5574 Remote Similarity NPC470914
0.5565 Remote Similarity NPC273189
0.5556 Remote Similarity NPC220160
0.5556 Remote Similarity NPC488309
0.5546 Remote Similarity NPC309714
0.5541 Remote Similarity NPC478559
0.5541 Remote Similarity NPC478560
0.5538 Remote Similarity NPC4749
0.5538 Remote Similarity NPC85154
0.5537 Remote Similarity NPC470514
0.5537 Remote Similarity NPC470513
0.5528 Remote Similarity NPC301449
0.5528 Remote Similarity NPC601290
0.552 Remote Similarity NPC210729
0.552 Remote Similarity NPC470915
0.552 Remote Similarity NPC82931
0.5504 Remote Similarity NPC191827
0.55 Remote Similarity NPC173859
0.55 Remote Similarity NPC305267
0.5496 Remote Similarity NPC57484
0.5492 Remote Similarity NPC64715
0.5489 Remote Similarity NPC43550
0.5484 Remote Similarity NPC488564
0.5484 Remote Similarity NPC160452
0.5481 Remote Similarity NPC70809
0.5478 Remote Similarity NPC48499
0.5469 Remote Similarity NPC470911
0.5462 Remote Similarity NPC277212
0.5462 Remote Similarity NPC30279
0.5455 Remote Similarity NPC286457
0.5455 Remote Similarity NPC118440
0.5455 Remote Similarity NPC476780
0.5448 Remote Similarity NPC136768
0.5442 Remote Similarity NPC300655
0.5442 Remote Similarity NPC13989
0.5442 Remote Similarity NPC196874
0.5435 Remote Similarity NPC489209
0.5424 Remote Similarity NPC295371
0.5423 Remote Similarity NPC475177
0.5423 Remote Similarity NPC489208
0.542 Remote Similarity NPC301639
0.542 Remote Similarity NPC478065
0.5417 Remote Similarity NPC484831
0.5417 Remote Similarity NPC484830
0.541 Remote Similarity NPC222580
0.5397 Remote Similarity NPC473688
0.5391 Remote Similarity NPC164194
0.5385 Remote Similarity NPC470517
0.5379 Remote Similarity NPC329893
0.5378 Remote Similarity NPC76497
0.534 Remote Similarity NPC294360
0.5339 Remote Similarity NPC127056
0.5338 Remote Similarity NPC22709
0.5333 Remote Similarity NPC110700
0.5333 Remote Similarity NPC476777
0.5323 Remote Similarity NPC37134
0.5323 Remote Similarity NPC207693
0.5317 Remote Similarity NPC475630
0.5312 Remote Similarity NPC475287
0.5308 Remote Similarity NPC135904
0.5303 Remote Similarity NPC481080
0.5299 Remote Similarity NPC225791
0.5299 Remote Similarity NPC41061
0.5299 Remote Similarity NPC227551
0.5298 Remote Similarity NPC222951
0.5285 Remote Similarity NPC475504
0.528 Remote Similarity NPC157571
0.528 Remote Similarity NPC471373
0.5276 Remote Similarity NPC11242
0.527 Remote Similarity NPC233223
0.527 Remote Similarity NPC183816
0.527 Remote Similarity NPC43589
0.527 Remote Similarity NPC220838
0.5263 Remote Similarity NPC178264
0.5263 Remote Similarity NPC23020
0.5263 Remote Similarity NPC21691
0.5259 Remote Similarity NPC471385
0.525 Remote Similarity NPC80843
0.5246 Remote Similarity NPC104400
0.5246 Remote Similarity NPC10320
0.5242 Remote Similarity NPC253611
0.5242 Remote Similarity NPC79718
0.5242 Remote Similarity NPC488782
0.5242 Remote Similarity NPC488515
0.5242 Remote Similarity NPC484832
0.5227 Remote Similarity NPC54636
0.5221 Remote Similarity NPC236638
0.5221 Remote Similarity NPC294453
0.5221 Remote Similarity NPC305981
0.5221 Remote Similarity NPC481081
0.5217 Remote Similarity NPC482011
0.5203 Remote Similarity NPC139044
0.5203 Remote Similarity NPC484829
0.52 Remote Similarity NPC236657
0.5197 Remote Similarity NPC187290
0.5195 Remote Similarity NPC113620
0.5194 Remote Similarity NPC313110
0.5191 Remote Similarity NPC219180
0.5188 Remote Similarity NPC192765
0.5182 Remote Similarity NPC261506
0.5182 Remote Similarity NPC309223
0.5182 Remote Similarity NPC302543
0.5182 Remote Similarity NPC4328
0.5175 Remote Similarity NPC128925
0.5172 Remote Similarity NPC204458
0.5164 Remote Similarity NPC480947
0.5164 Remote Similarity NPC114304
0.5161 Remote Similarity NPC488517
0.5159 Remote Similarity NPC323359
0.5159 Remote Similarity NPC324875
0.5159 Remote Similarity NPC292677
0.5152 Remote Similarity NPC470218
0.5149 Remote Similarity NPC470518
0.5147 Remote Similarity NPC65105
0.5143 Remote Similarity NPC102505
0.5143 Remote Similarity NPC488514
0.5132 Remote Similarity NPC311178
0.5128 Remote Similarity NPC100612
0.5128 Remote Similarity NPC78046

Similar Clinical/Approved Drugs

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules.

●  The left chart: Distribution of similarity level between NPC610204 and all drugs/candidates.
●  The right table: Most similar clinical/approved drugs (Tc>=0.5 or Top200).

Similarity Score Similarity Level Drug ID Developmental Stage
NPD

Bioactivity similarity

  Bioactivity similarity

Similar Natural Products in NPASS

Similarity level is defined by Bioactivity similarity was calculated based on bioactivity descriptors of compounds. The bioactivity descriptors were calculated by a recently developed AI algorithm Chemical Checker (CC) [Nature Biotechnology, 38:1087–1096, 2020; Nature Communications, 12:3932, 2021], which evaluated bioactivity similarities at five levels:
A: chemistry similarity;
B: biological targets similarity;
C: networks similarity;
D: cell-based bioactivity similarity;
E: similarity based on clinical data.
Those 5 categories of CC bioactivity descriptors were calculated and then subjected to manifold projection using UMAP algorithm, to project all NPs on a 2-Dimensional space. The current NP was highlighted with a small circle in the 2-D map. Below figures: left-to-right, A-to-E.

A: chemistry similarity
B: biological targets similarity
C: networks similarity
D: cell-based bioactivity similarity
E: similarity based on clinical data