Natural Product: NPC488309

Natural Product IDNPC488309
Common Name
?
The InCHIKey will be temporarily assigned as the "Common Name" if no IUPAC name or alternative short name is available.
JJGYHRNOSFFYSP-FOMPCFLBSA-N
IUPAC Name n.a.
Synonyms
Synthetic Gene Cluster n.a.
ChEMBL Identifier n.a.
PubChem CID 44566566
Chemical Classification
  • CHEMONTID:0000000 [Organic compounds]
    • [CHEMONTID:0000012] Lipids and lipid-like molecules
      • [CHEMONTID:0000259] Prenol lipids
        • [CHEMONTID:0002049] Terpene glycosides
          • [CHEMONTID:0001580] Triterpene glycosides
            • [CHEMONTID:0002358] Triterpene saponins

The Chemical Classification was calculated by Classyfire, a software for chemical taxonomy calculation. Reference: DOI:10.1186/s13321-016-0174-y.

  Chemical Representations

Standard InCHIKey JJGYHRNOSFFYSP-FOMPCFLBSA-N
Standard InCHI InChI=1S/C61H96O26/c1-11-13-36(67)82-48-49(87-51(77)26(3)12-2)61(25-63)28(20-56(48,4)5)27-14-15-33-58(8)18-17-35(57(6,7)32(58)16-19-59(33,9)60(27,10)21-34(61)66)81-55-47(86-53-42(73)40(71)39(70)31(22-62)80-53)44(43(74)45(84-55)50(75)76)83-54-46(38(69)30(65)24-79-54)85-52-41(72)37(68)29(64)23-78-52/h11,13-14,26,28-35,37-49,52-55,62-66,68-74H,12,15-25H2,1-10H3,(H,75,76)/b13-11-/t26?,28-,29+,30-,31+,32?,33+,34+,35-,37-,38-,39-,40-,41+,42+,43-,44-,45-,46+,47+,48-,49-,52-,53-,54-,55+,58-,59+,60+,61-/m0/s1
SMILES C/C=CC(=O)O[C@H]1[C@@H]([C@@]2(CO)[C@@H](CC1(C)C)C1=CC[C@@H]3[C@@]4(C)CC[C@@H](C(C)(C)C4CC[C@@]3(C)[C@]1(C)C[C@H]2O)O[C@H]1[C@@H]([C@H]([C@@H]([C@@H](C(=O)O)O1)O)O[C@H]1[C@@H]([C@H]([C@H](CO1)O)O)O[C@H]1[C@@H]([C@H]([C@@H](CO1)O)O)O)O[C@H]1[C@@H]([C@H]([C@H]([C@@H](CO)O1)O)O)O)OC(=O)C(C)CC

  Calculated Properties

Physi-Chem Properties

Molecular Weight:   1244.62 Volume:   1201.967
?
Van der Waals volume.
Dense:   1.035 LogP:   2.284
?
The logarithm of the n-octanol/water distribution coefficients.
logD7.4:   2.991
?
The logarithm of the n-octanol/water distribution coefficient at pH=7.4.
LogS:   -4.236
?
The logarithm of aqueous solubility value.
Rotatable Bonds:   18.0 Rigid Bonds:   54.0
TPSA:   406.5
?
Topological Polar Surface Area.
H-Bond Acceptor:   26.0
H-Bond Donor:   13.0 Rings:   9.0
Heavy Atoms:   26.0

MedChem Properties

QED Drug-Likeness Score:   0.04 GASA:   1.0
?
GASA represents the probability of being difficult to synthesize, ranging from 0 to 1.
Synthetic Accessibility Score:   7.383 Fsp3:   0.885
MCE-18:   202.174
?
MCE-18 stands for medicinal chemistry evolution.MCE-18≥45 is considered a suitable value.
Lipinski Rule-of-5:   Accepted
Pfizer Rule:   Rejected GSK Rule:   Accepted
Golden Triangle Rule:   Accepted BMS Rule:   1
Chelating Alert:   0 PAINS Alert:   0
Colloidal aggregators:   0.883 Fluc inhibitor:   0.002
?
The fluc inhibitor value is the probability of being fLuc inhibitors, within the range of 0 to 1.
Blue fluorescence:   0.005
?
The blue fluorescence value is the probability of being blue fluorescence, within the range of 0 to 1
Green fluorescence:   0.015
?
The green fluorescence value is the probability of being green fluorescence, within the range of 0 to 1
Reactive compounds:   0.318 Promiscuous compounds:   0.109

ADMET Properties (ADMETlab3.0)

ADMET: Absorption

Caco-2 Permeability:   -6.231 MDCK Permeability:   -5.2
Pgp-inhibitor:   0.0 Pgp-substrate:   0.484
PAMPA:   1.0
?
The experimental data for Peff was logarithmically transformed (logPeff). Molecules with log Peff values below 2.0 were classified as low-permeability (Category 0), while those with log Peff values exceeding 2.5 were classified as high-permeability (Category 1).
Human Intestinal Absorption (HIA):   0.32
20% Bioavailability (F20%):   0.989 30% Bioavailability (F30%):   0.995
50% Bioavailability (F50%):   1.0

ADMET: Distribution

Blood-Brain-Barrier Penetration (BBB):   0.0 MRP1:   0.978
Plasma Protein Binding (PPB):   65.31% Volume Distribution (VD):   -0.496
Fu: 21.952%
?
The fraction unbound in plasms.
OATP1B1 inhibitor:   1.0
OATP1B3 inhibitor:   0.712 BCRP inhibitor:   0.0
BSEP inhibitor:   0.0

ADMET: Metabolism

CYP1A2-inhibitor:   0.0 CYP1A2-substrate:   0.0
CYP2C19-inhibitor:   0.0 CYP2C19-substrate:   0.001
CYP2C9-inhibitor:   0.0 CYP2C9-substrate:   0.0
CYP2D6-inhibitor:   0.0 CYP2D6-substrate:   0.0
CYP3A4-inhibitor:   0.0 CYP3A4-substrate:   0.001
CYP2B6-substrate:   0.0 CYP2C8-inhibitor:   0.431
HLM stability:   0.173
?
Human liver microsomal (HLM) stability. Category 0: stable+ (HLM > 30 min); Category 1: unstable- (HLM ≤ 30 min). The output value is the probability of human liver microsomal instability, where a value closer to 1 indicates a higher likelihood of instability.

ADMET: Excretion

Clearance (CL):  -0.232 Half-life (T1/2):  2.912

ADMET: Toxicity

hERG Blockers:  0.001 hERG Blockers (10um):  0.001
Human Hepatotoxicity (H-HT):  0.676 Drug-induced Liver Injury (DILI):  0.874
AMES Toxicity:  0.926 Rat Oral Acute Toxicity:  0.001
Maximum Recommended Daily Dose:  0.001 Skin Sensitization:  1.0
Carcinogencity:  0.011 Eye Corrosion:  0.0
Eye Irritation:  0.001 Respiratory Toxicity:  0.011
Drug-induced Neurotoxicity:  0.0 Ototoxicity:  0.999
Hematotoxicity:  0.499 Drug-induced Nephrotoxicity:  1.0
Genotoxicity:  0.112 RPMI-8226 Immunitoxicity:  0.37
A549 Cytotoxicity:  0.997 Hek293 Cytotoxicity:  0.667
BCF:   0.23
?
Bioconcentration factors are used for considering secondary poisoning potential and assessing risks to human health via the food chain. The unit is -log10[(mg/L)/(1000*MW)].
IGC50:   3.518
?
48 hour Tetrahymena pyriformis IGC50. The unit of IGC50 is -log10[(mg/L)/(1000*MW)].
LC50DM:   5.677
?
48 hour Daphnia magna LC50. The unit of LC50DM is -log10[(mg/L)/(1000*MW)].
LC50FM:   4.391
?
96 hour fathead minnow LC50. The unit of LC50FM is -log10[(mg/L)/(1000*MW)].

  Species Source

Organism ID Organism Name Taxonomy Level Family SuperKingdom Isolation Part Collection Location Collection Time Reference
NPO8258 Camellia sinensis Species Theaceae Eukaryota n.a. n.a. n.a. PMID[ 16712885]
NPO8258 Camellia sinensis Species Theaceae Eukaryota n.a. n.a. n.a. DOI[10.1016/j.foodchem.2013.08.121]
NPO8258 Camellia sinensis Species Theaceae Eukaryota Flowers n.a. n.a. PMID[16180814]
NPO8258 Camellia sinensis Species Theaceae Eukaryota seeds Shizuoka prefecture, Japan n.a. PMID[16499314]
NPO8258 Camellia sinensis Species Theaceae Eukaryota n.a. n.a. n.a. PMID[18068204]
NPO8258 Camellia sinensis Species Theaceae Eukaryota n.a. n.a. n.a. PMID[21434603]
NPO8258 Camellia sinensis Species Theaceae Eukaryota n.a. flower n.a. PMID[21922925]
NPO8258 Camellia sinensis Species Theaceae Eukaryota flower buds n.a. n.a. PMID[21925888]
NPO8258 Camellia sinensis Species Theaceae Eukaryota leaves n.a. n.a. PMID[22377672]
NPO8258 Camellia sinensis Species Theaceae Eukaryota n.a. leaf n.a. PMID[23265489]
NPO8258 Camellia sinensis Species Theaceae Eukaryota Leaves Bandung, West Java, Indonesia PMID[23621359]
NPO8258 Camellia sinensis Species Theaceae Eukaryota n.a. n.a. n.a. PMID[37255739]
NPO8258 Camellia sinensis Species Theaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO8258 Camellia sinensis Species Theaceae Eukaryota n.a. n.a. Database[FooDB]
NPO8258 Camellia sinensis Species Theaceae Eukaryota n.a. n.a. Database[FooDB]
NPO8258 Camellia sinensis Species Theaceae Eukaryota Stem n.a. n.a. Database[FooDB]
NPO8258 Camellia sinensis Species Theaceae Eukaryota Shoot n.a. n.a. Database[FooDB]
NPO8258 Camellia sinensis Species Theaceae Eukaryota Seed Oil n.a. n.a. Database[FooDB]
NPO8258 Camellia sinensis Species Theaceae Eukaryota Seed n.a. n.a. Database[FooDB]
NPO8258 Camellia sinensis Species Theaceae Eukaryota Plant n.a. n.a. Database[FooDB]
NPO8258 Camellia sinensis Species Theaceae Eukaryota Leaf Essent. Oil n.a. n.a. Database[FooDB]
NPO8258 Camellia sinensis Species Theaceae Eukaryota Leaf n.a. n.a. Database[FooDB]
NPO8258 Camellia sinensis Species Theaceae Eukaryota Cotyledon n.a. n.a. Database[FooDB]
NPO8258 Camellia sinensis Species Theaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO8258 Camellia sinensis Species Theaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO8258 Camellia sinensis Species Theaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO8258 Camellia sinensis Species Theaceae Eukaryota n.a. n.a. n.a. Database[UNPD]

Note for Reference:
In addition to directly collecting NP source organism data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated them from below databases:
UNPD: Universal Natural Products Database [PMID: 23638153].
StreptomeDB: a database of streptomycetes natural products [PMID: 33051671].
TM-MC: a database of medicinal materials and chemical compounds in Northeast Asian traditional medicine [PMID: 26156871].
TCM@Taiwan: a Traditional Chinese Medicine database [PMID: 21253603].
TCMID: a Traditional Chinese Medicine database [PMID: 29106634].
TCMSP: The traditional Chinese medicine systems pharmacology database and analysis platform [PMID: 24735618].
HerDing: a herb recommendation system to treat diseases using genes and chemicals [PMID: 26980517].
MetaboLights: a metabolomics database [PMID: 27010336].
FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].



  NP Quantity Composition/Concentration

Organism ID Organism Name Organism Material Preparation Organism Part NP Quantity (Standard) NP Quantity (Minimum) NP Quantity (Maximum) Quantity Unit Reference

Note for Reference:
In addition to directly collecting NP quantitative data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated NP quantitative records for specific NP domains (e.g., NPS from foods or herbs) from domain-specific databases. These databases include:
DUKE: Dr. Duke's Phytochemical and Ethnobotanical Databases.
PHENOL EXPLORER: is the first comprehensive database on polyphenol content in foods [PMID: 24103452], its homepage can be accessed at here.
FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].



 Biological Activity

Molecular-level activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference

In vitro activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference

In vivo activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference
NPT32 Organism Mus musculus Mus musculus Activity = 348.5 mg/dl PMID[16180814]
NPT32 Organism Mus musculus Mus musculus Activity = 204.1 mg/dl PMID[16180814]
NPT32 Organism Mus musculus Mus musculus Activity = 143.1 mg/dl PMID[16180814]
NPT32 Organism Mus musculus Mus musculus Activity = 260.4 mg/dl PMID[16180814]
NPT32 Organism Mus musculus Mus musculus Activity = 238.6 mg/dl PMID[16180814]
NPT32 Organism Mus musculus Mus musculus Activity = 144.8 mg/dl PMID[16180814]
NPT32 Organism Mus musculus Mus musculus Activity = 188.4 mg/dl PMID[16180814]
NPT32 Organism Mus musculus Mus musculus Activity = 204.6 mg/dl PMID[16180814]
NPT32 Organism Mus musculus Mus musculus Activity = 244.0 mg/dl PMID[16180814]





 Experimental ADME

Experiment Model Experiment Tissue ADME Type ADME Relation ADME Value ADME Unit Reference





 Experimental Toxicity

Quantitative toxicity

Experiment Model Experiment Organism Toxicity Type Toxicity Relation Toxicity Value Toxicity Unit Reference

Common Abbreviations:
LC: Lethal Concentration; LD: Lethal Dose; LT:Lethal Time; NOAEL: No-observed-adverse-effect Level; BMDL: Benchmark Dose Lower Confidence Limit; BMD: Benchmark Dose; BMC:Benchmark Concentration; LOAEL: Lowest Observed Adverse Effect Level; RfD:Reference Dose; RfC:Reference Concentration; MRL: Minimal Risk Level; MEG: Maximum Exposure Guideline; PAC: Protective Action Criteria

Categorical toxicity labels

Hepatotoxicity Carcinogenicity Mutagenicity Cardiotoxicity Respiratory Toxicity Eye Irritation Endocrine Disruption
Hepatotoxicity Carcinogenicity Mutagenicity Cardiotoxicity Respiratory Toxicity Eye Irritation Endocrine Disruption

Note for Reference:
In addition to directly collecting NP quantitative data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated NP toxicity records from domain-specific databases. These databases include:
ToxValDB: a curated database that compiles quantitative toxicity values for chemicals from diverse public sources to support toxicological research and risk assessment.
TOXRIC: a comprehensive, free-to-access, online database providing toxicological/feature data. The toxicity labels are retrieved from this database. [PMID: 36400569]


  Chemically structural similarity

Similar Active Natural Products in NPASS

Top-200 similar NPs were calculated against the active-NP-set (includes approximately 50,000 NPs with experimentally-derived bioactivity available in NPASS)

Similarity is measured using the Tanimoto coefficient (Tc) , which compares the binary fingerprints of two molecules. Tc is calculated as the intersection divided by the union of '1' bits in the fingerprints, ranging from 0 to 1, with 1 indicating highest similarity.

●  The left chart: Distribution of similarity level between NPC488309 and all remaining natural products in the NPASS database.
●  The right table: Most similar natural products (Tc>=0.5 or Top200).

Similarity Score Similarity Level Natural Product ID
0.9464 High Similarity NPC488308
0.9381 High Similarity NPC312650
0.8571 High Similarity NPC110700
0.8559 High Similarity NPC271610
0.8017 Intermediate Similarity NPC476780
0.7983 Intermediate Similarity NPC602995
0.7823 Intermediate Similarity NPC476777
0.7724 Intermediate Similarity NPC265841
0.7419 Intermediate Similarity NPC192765
0.7417 Intermediate Similarity NPC25998
0.736 Intermediate Similarity NPC178264
0.7258 Intermediate Similarity NPC283417
0.7258 Intermediate Similarity NPC200049
0.7054 Intermediate Similarity NPC476779
0.7045 Intermediate Similarity NPC279915
0.7031 Intermediate Similarity NPC476774
0.7008 Intermediate Similarity NPC329828
0.6825 Remote Similarity NPC284449
0.6767 Remote Similarity NPC476775
0.6744 Remote Similarity NPC71391
0.6565 Remote Similarity NPC470518
0.6544 Remote Similarity NPC476778
0.6496 Remote Similarity NPC476776
0.6471 Remote Similarity NPC484063
0.6471 Remote Similarity NPC484064
0.6418 Remote Similarity NPC484059
0.6418 Remote Similarity NPC484060
0.6406 Remote Similarity NPC609119
0.6371 Remote Similarity NPC302887
0.6364 Remote Similarity NPC329923
0.6364 Remote Similarity NPC475281
0.6349 Remote Similarity NPC160452
0.6349 Remote Similarity NPC477193
0.6299 Remote Similarity NPC329976
0.6288 Remote Similarity NPC46823
0.626 Remote Similarity NPC44716
0.6241 Remote Similarity NPC4749
0.6231 Remote Similarity NPC478155
0.6231 Remote Similarity NPC478154
0.6204 Remote Similarity NPC302543
0.6179 Remote Similarity NPC605226
0.6172 Remote Similarity NPC187290
0.6131 Remote Similarity NPC329657
0.6119 Remote Similarity NPC82380
0.6119 Remote Similarity NPC244296
0.5956 Remote Similarity NPC21691
0.5954 Remote Similarity NPC107536
0.5954 Remote Similarity NPC280029
0.5954 Remote Similarity NPC9470
0.5942 Remote Similarity NPC484833
0.5891 Remote Similarity NPC477191
0.5859 Remote Similarity NPC64715
0.5797 Remote Similarity NPC478596
0.5786 Remote Similarity NPC475377
0.5786 Remote Similarity NPC476074
0.576 Remote Similarity NPC80843
0.576 Remote Similarity NPC22956
0.5758 Remote Similarity NPC477195
0.5758 Remote Similarity NPC606553
0.5755 Remote Similarity NPC225791
0.5735 Remote Similarity NPC475140
0.5726 Remote Similarity NPC127056
0.5725 Remote Similarity NPC484061
0.5725 Remote Similarity NPC484062
0.5714 Remote Similarity NPC475119
0.5714 Remote Similarity NPC477196
0.5703 Remote Similarity NPC475591
0.5703 Remote Similarity NPC236870
0.5693 Remote Similarity NPC277212
0.5693 Remote Similarity NPC30279
0.5682 Remote Similarity NPC104137
0.5682 Remote Similarity NPC207738
0.5682 Remote Similarity NPC26626
0.5669 Remote Similarity NPC117714
0.5649 Remote Similarity NPC301449
0.5649 Remote Similarity NPC23275
0.5649 Remote Similarity NPC601290
0.5639 Remote Similarity NPC480939
0.5639 Remote Similarity NPC11242
0.5639 Remote Similarity NPC605294
0.5606 Remote Similarity NPC477078
0.5597 Remote Similarity NPC288205
0.5597 Remote Similarity NPC51465
0.5556 Remote Similarity NPC610204
0.5547 Remote Similarity NPC30289
0.5532 Remote Similarity NPC329993
0.5504 Remote Similarity NPC164389
0.5504 Remote Similarity NPC232237
0.5496 Remote Similarity NPC79718
0.5489 Remote Similarity NPC477077
0.5481 Remote Similarity NPC470475
0.5468 Remote Similarity NPC47995
0.5448 Remote Similarity NPC469947
0.5448 Remote Similarity NPC480948
0.5448 Remote Similarity NPC329960
0.5442 Remote Similarity NPC489209
0.5441 Remote Similarity NPC473824
0.5435 Remote Similarity NPC603137
0.5433 Remote Similarity NPC603026
0.5423 Remote Similarity NPC262796
0.5423 Remote Similarity NPC45346
0.5417 Remote Similarity NPC173435
0.5417 Remote Similarity NPC172374
0.5417 Remote Similarity NPC478064
0.5414 Remote Similarity NPC291903
0.5391 Remote Similarity NPC263756
0.539 Remote Similarity NPC134914
0.5373 Remote Similarity NPC187618
0.5357 Remote Similarity NPC473918
0.5352 Remote Similarity NPC286457
0.5333 Remote Similarity NPC475486
0.5329 Remote Similarity NPC489208
0.5324 Remote Similarity NPC478150
0.5319 Remote Similarity NPC181066
0.5319 Remote Similarity NPC85154
0.5319 Remote Similarity NPC475167
0.5312 Remote Similarity NPC472949
0.5312 Remote Similarity NPC488561
0.5299 Remote Similarity NPC324875
0.5299 Remote Similarity NPC292677
0.528 Remote Similarity NPC1046
0.5276 Remote Similarity NPC59804
0.5271 Remote Similarity NPC213674
0.5267 Remote Similarity NPC251768
0.5263 Remote Similarity NPC488515
0.5255 Remote Similarity NPC185466
0.5255 Remote Similarity NPC478152
0.5255 Remote Similarity NPC478151
0.5235 Remote Similarity NPC69425
0.5227 Remote Similarity NPC105800
0.5224 Remote Similarity NPC470914
0.5221 Remote Similarity NPC477194
0.5217 Remote Similarity NPC610461
0.5214 Remote Similarity NPC470476
0.5211 Remote Similarity NPC478597
0.5208 Remote Similarity NPC475513
0.5205 Remote Similarity NPC11577
0.5205 Remote Similarity NPC141600
0.5185 Remote Similarity NPC218954
0.5182 Remote Similarity NPC210729
0.5182 Remote Similarity NPC82931
0.518 Remote Similarity NPC123522
0.518 Remote Similarity NPC151543
0.5175 Remote Similarity NPC473755
0.5156 Remote Similarity NPC56713
0.5152 Remote Similarity NPC104400
0.5152 Remote Similarity NPC488526
0.5152 Remote Similarity NPC10320
0.5147 Remote Similarity NPC480474
0.5145 Remote Similarity NPC472267
0.5145 Remote Similarity NPC115656
0.5115 Remote Similarity NPC112352
0.5113 Remote Similarity NPC63159
0.5109 Remote Similarity NPC481078
0.5109 Remote Similarity NPC609281
0.5108 Remote Similarity NPC313110
0.5106 Remote Similarity NPC166422
0.5106 Remote Similarity NPC219180
0.5106 Remote Similarity NPC251263
0.5075 Remote Similarity NPC481082
0.5075 Remote Similarity NPC470913
0.5075 Remote Similarity NPC164419
0.5062 Remote Similarity NPC485563
0.5038 Remote Similarity NPC469946
0.5038 Remote Similarity NPC480475
0.5036 Remote Similarity NPC480473
0.5035 Remote Similarity NPC471384
0.5035 Remote Similarity NPC252289
0.5035 Remote Similarity NPC305793
0.5034 Remote Similarity NPC473452
0.5034 Remote Similarity NPC220160

Similar Clinical/Approved Drugs

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules.

●  The left chart: Distribution of similarity level between NPC488309 and all drugs/candidates.
●  The right table: Most similar clinical/approved drugs (Tc>=0.5 or Top200).

Similarity Score Similarity Level Drug ID Developmental Stage
NPD

Bioactivity similarity

  Bioactivity similarity

Similar Natural Products in NPASS

Similarity level is defined by Bioactivity similarity was calculated based on bioactivity descriptors of compounds. The bioactivity descriptors were calculated by a recently developed AI algorithm Chemical Checker (CC) [Nature Biotechnology, 38:1087–1096, 2020; Nature Communications, 12:3932, 2021], which evaluated bioactivity similarities at five levels:
A: chemistry similarity;
B: biological targets similarity;
C: networks similarity;
D: cell-based bioactivity similarity;
E: similarity based on clinical data.
Those 5 categories of CC bioactivity descriptors were calculated and then subjected to manifold projection using UMAP algorithm, to project all NPs on a 2-Dimensional space. The current NP was highlighted with a small circle in the 2-D map. Below figures: left-to-right, A-to-E.

A: chemistry similarity
B: biological targets similarity
C: networks similarity
D: cell-based bioactivity similarity
E: similarity based on clinical data