Natural Product: NPC606145

The Chemical Classification was calculated by Classyfire, a software for chemical taxonomy calculation. Reference: DOI:10.1186/s13321-016-0174-y.

  Chemical Representations

  Calculated Properties

Physi-Chem Properties

MedChem Properties

ADMET Properties (ADMETlab3.0)

ADMET: Absorption

ADMET: Distribution

ADMET: Metabolism

ADMET: Excretion

ADMET: Toxicity

  Species Source

Organism ID Organism Name Taxonomy Level Family SuperKingdom Isolation Part Collection Location Collection Time Reference

Note for Reference:
In addition to directly collecting NP source organism data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated them from below databases:
UNPD: Universal Natural Products Database [PMID: 23638153].
StreptomeDB: a database of streptomycetes natural products [PMID: 33051671].
TM-MC: a database of medicinal materials and chemical compounds in Northeast Asian traditional medicine [PMID: 26156871].
TCM@Taiwan: a Traditional Chinese Medicine database [PMID: 21253603].
TCMID: a Traditional Chinese Medicine database [PMID: 29106634].
TCMSP: The traditional Chinese medicine systems pharmacology database and analysis platform [PMID: 24735618].
HerDing: a herb recommendation system to treat diseases using genes and chemicals [PMID: 26980517].
MetaboLights: a metabolomics database [PMID: 27010336].
FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].



  NP Quantity Composition/Concentration

Organism ID Organism Name Organism Material Preparation Organism Part NP Quantity (Standard) NP Quantity (Minimum) NP Quantity (Maximum) Quantity Unit Reference

Note for Reference:
In addition to directly collecting NP quantitative data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated NP quantitative records for specific NP domains (e.g., NPS from foods or herbs) from domain-specific databases. These databases include:
DUKE: Dr. Duke's Phytochemical and Ethnobotanical Databases.
PHENOL EXPLORER: is the first comprehensive database on polyphenol content in foods [PMID: 24103452], its homepage can be accessed at here.
FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].



 Biological Activity

Molecular-level activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference

In vitro activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference

In vivo activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference





 Experimental ADME

Experiment Model Experiment Tissue ADME Type ADME Relation ADME Value ADME Unit Reference





 Experimental Toxicity

Quantitative toxicity

Experiment Model Experiment Organism Toxicity Type Toxicity Relation Toxicity Value Toxicity Unit Reference

Common Abbreviations:
LC: Lethal Concentration; LD: Lethal Dose; LT:Lethal Time; NOAEL: No-observed-adverse-effect Level; BMDL: Benchmark Dose Lower Confidence Limit; BMD: Benchmark Dose; BMC:Benchmark Concentration; LOAEL: Lowest Observed Adverse Effect Level; RfD:Reference Dose; RfC:Reference Concentration; MRL: Minimal Risk Level; MEG: Maximum Exposure Guideline; PAC: Protective Action Criteria

Categorical toxicity labels

Hepatotoxicity Carcinogenicity Mutagenicity Cardiotoxicity Respiratory Toxicity Eye Irritation Endocrine Disruption
Hepatotoxicity Carcinogenicity Mutagenicity Cardiotoxicity Respiratory Toxicity Eye Irritation Endocrine Disruption

Note for Reference:
In addition to directly collecting NP quantitative data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated NP toxicity records from domain-specific databases. These databases include:
ToxValDB: a curated database that compiles quantitative toxicity values for chemicals from diverse public sources to support toxicological research and risk assessment.
TOXRIC: a comprehensive, free-to-access, online database providing toxicological/feature data. The toxicity labels are retrieved from this database. [PMID: 36400569]


  Chemically structural similarity

Similar Active Natural Products in NPASS

Top-200 similar NPs were calculated against the active-NP-set (includes approximately 50,000 NPs with experimentally-derived bioactivity available in NPASS)

Similarity is measured using the Tanimoto coefficient (Tc) , which compares the binary fingerprints of two molecules. Tc is calculated as the intersection divided by the union of '1' bits in the fingerprints, ranging from 0 to 1, with 1 indicating highest similarity.

●  The left chart: Distribution of similarity level between NPC606145 and all remaining natural products in the NPASS database.
●  The right table: Most similar natural products (Tc>=0.5 or Top200).

Similarity Score Similarity Level Natural Product ID
0.8544 High Similarity NPC607904
0.8252 Intermediate Similarity NPC609281
0.819 Intermediate Similarity NPC610461
0.783 Intermediate Similarity NPC606553
0.7685 Intermediate Similarity NPC610204
0.7477 Intermediate Similarity NPC609305
0.6724 Remote Similarity NPC603137
0.6667 Remote Similarity NPC185466
0.6636 Remote Similarity NPC123796
0.6525 Remote Similarity NPC475140
0.6372 Remote Similarity NPC78034
0.6348 Remote Similarity NPC207738
0.6182 Remote Similarity NPC469946
0.6134 Remote Similarity NPC151543
0.6087 Remote Similarity NPC470914
0.6087 Remote Similarity NPC77717
0.605 Remote Similarity NPC473824
0.6036 Remote Similarity NPC213674
0.5982 Remote Similarity NPC478066
0.5929 Remote Similarity NPC30289
0.5902 Remote Similarity NPC166422
0.5897 Remote Similarity NPC481079
0.5891 Remote Similarity NPC482011
0.5887 Remote Similarity NPC71391
0.5862 Remote Similarity NPC471435
0.5862 Remote Similarity NPC471434
0.5833 Remote Similarity NPC475119
0.5833 Remote Similarity NPC288205
0.5833 Remote Similarity NPC51465
0.582 Remote Similarity NPC471384
0.5804 Remote Similarity NPC488561
0.5798 Remote Similarity NPC138219
0.5798 Remote Similarity NPC475234
0.5763 Remote Similarity NPC291903
0.5752 Remote Similarity NPC263756
0.575 Remote Similarity NPC471375
0.5748 Remote Similarity NPC470876
0.5702 Remote Similarity NPC51579
0.569 Remote Similarity NPC105800
0.5672 Remote Similarity NPC33012
0.5667 Remote Similarity NPC273189
0.5664 Remote Similarity NPC470512
0.5652 Remote Similarity NPC117714
0.5641 Remote Similarity NPC257468
0.5641 Remote Similarity NPC297263
0.5636 Remote Similarity NPC1046
0.5635 Remote Similarity NPC192765
0.561 Remote Similarity NPC123522
0.5603 Remote Similarity NPC488526
0.5603 Remote Similarity NPC148603
0.5597 Remote Similarity NPC8524
0.5593 Remote Similarity NPC302887
0.5591 Remote Similarity NPC178264
0.5556 Remote Similarity NPC63159
0.5556 Remote Similarity NPC277212
0.5556 Remote Similarity NPC30279
0.5537 Remote Similarity NPC104137
0.5537 Remote Similarity NPC31838
0.5537 Remote Similarity NPC26626
0.5508 Remote Similarity NPC470913
0.55 Remote Similarity NPC471373
0.5492 Remote Similarity NPC473688
0.5489 Remote Similarity NPC250247
0.5476 Remote Similarity NPC283417
0.5476 Remote Similarity NPC200049
0.547 Remote Similarity NPC164389
0.547 Remote Similarity NPC173859
0.547 Remote Similarity NPC480475
0.5462 Remote Similarity NPC253611
0.5462 Remote Similarity NPC488782
0.5455 Remote Similarity NPC488564
0.5455 Remote Similarity NPC470477
0.544 Remote Similarity NPC284449
0.544 Remote Similarity NPC205129
0.544 Remote Similarity NPC323341
0.5426 Remote Similarity NPC265841
0.5426 Remote Similarity NPC22709
0.5417 Remote Similarity NPC37134
0.5417 Remote Similarity NPC207693
0.5414 Remote Similarity NPC482010
0.541 Remote Similarity NPC475630
0.541 Remote Similarity NPC481078
0.5397 Remote Similarity NPC123199
0.5391 Remote Similarity NPC301639
0.5391 Remote Similarity NPC478065
0.5391 Remote Similarity NPC603026
0.5385 Remote Similarity NPC225791
0.5379 Remote Similarity NPC482012
0.5378 Remote Similarity NPC470514
0.5378 Remote Similarity NPC470513
0.5372 Remote Similarity NPC157571
0.5366 Remote Similarity NPC471374
0.5357 Remote Similarity NPC164194
0.5354 Remote Similarity NPC471425
0.5339 Remote Similarity NPC232237
0.5333 Remote Similarity NPC79718
0.5333 Remote Similarity NPC484832
0.5328 Remote Similarity NPC160452
0.5312 Remote Similarity NPC189575
0.5312 Remote Similarity NPC46823
0.5308 Remote Similarity NPC106701
0.5304 Remote Similarity NPC127056
0.5299 Remote Similarity NPC256133
0.5299 Remote Similarity NPC112352
0.5294 Remote Similarity NPC118440
0.5289 Remote Similarity NPC267238
0.5276 Remote Similarity NPC262567
0.5271 Remote Similarity NPC471429
0.5268 Remote Similarity NPC90856
0.5254 Remote Similarity NPC309714
0.5246 Remote Similarity NPC301449
0.5246 Remote Similarity NPC601290
0.5242 Remote Similarity NPC470915
0.5238 Remote Similarity NPC79643
0.5234 Remote Similarity NPC191827
0.5231 Remote Similarity NPC57484
0.5224 Remote Similarity NPC70809
0.5214 Remote Similarity NPC76497
0.5214 Remote Similarity NPC80843
0.521 Remote Similarity NPC104400
0.521 Remote Similarity NPC10320
0.5207 Remote Similarity NPC488515
0.52 Remote Similarity NPC172365
0.5197 Remote Similarity NPC470911
0.5191 Remote Similarity NPC488308
0.5188 Remote Similarity NPC136768
0.5175 Remote Similarity NPC48499
0.5172 Remote Similarity NPC18724
0.5167 Remote Similarity NPC139044
0.5154 Remote Similarity NPC4749
0.5154 Remote Similarity NPC85154
0.5152 Remote Similarity NPC271610
0.5152 Remote Similarity NPC312650
0.5128 Remote Similarity NPC295371
0.5126 Remote Similarity NPC14946
0.5126 Remote Similarity NPC159005
0.5126 Remote Similarity NPC480947
0.5126 Remote Similarity NPC63368
0.5126 Remote Similarity NPC114304
0.5126 Remote Similarity NPC323231
0.5126 Remote Similarity NPC605226
0.5124 Remote Similarity NPC222580
0.5122 Remote Similarity NPC40716
0.5115 Remote Similarity NPC231566
0.5113 Remote Similarity NPC471385
0.5113 Remote Similarity NPC484059
0.5113 Remote Similarity NPC484060
0.5113 Remote Similarity NPC43550
0.5102 Remote Similarity NPC300655
0.5102 Remote Similarity NPC13989
0.5102 Remote Similarity NPC196874
0.5101 Remote Similarity NPC478559
0.5101 Remote Similarity NPC478560
0.5086 Remote Similarity NPC25605
0.5083 Remote Similarity NPC305267
0.5082 Remote Similarity NPC64715
0.5081 Remote Similarity NPC184805
0.5081 Remote Similarity NPC69811
0.5079 Remote Similarity NPC209798
0.5077 Remote Similarity NPC470912
0.5077 Remote Similarity NPC54636
0.5076 Remote Similarity NPC286457
0.5076 Remote Similarity NPC485123
0.5074 Remote Similarity NPC220160
0.5069 Remote Similarity NPC484831
0.5069 Remote Similarity NPC484830
0.5041 Remote Similarity NPC236657
0.504 Remote Similarity NPC187290
0.5039 Remote Similarity NPC219180
0.5039 Remote Similarity NPC135904
0.5038 Remote Similarity NPC471427
0.5038 Remote Similarity NPC329993
0.5034 Remote Similarity NPC220838

Similar Clinical/Approved Drugs

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules.

●  The left chart: Distribution of similarity level between NPC606145 and all drugs/candidates.
●  The right table: Most similar clinical/approved drugs (Tc>=0.5 or Top200).

Similarity Score Similarity Level Drug ID Developmental Stage
NPD

Bioactivity similarity

  Bioactivity similarity

Similar Natural Products in NPASS

Similarity level is defined by Bioactivity similarity was calculated based on bioactivity descriptors of compounds. The bioactivity descriptors were calculated by a recently developed AI algorithm Chemical Checker (CC) [Nature Biotechnology, 38:1087–1096, 2020; Nature Communications, 12:3932, 2021], which evaluated bioactivity similarities at five levels:
A: chemistry similarity;
B: biological targets similarity;
C: networks similarity;
D: cell-based bioactivity similarity;
E: similarity based on clinical data.
Those 5 categories of CC bioactivity descriptors were calculated and then subjected to manifold projection using UMAP algorithm, to project all NPs on a 2-Dimensional space. The current NP was highlighted with a small circle in the 2-D map. Below figures: left-to-right, A-to-E.

A: chemistry similarity
B: biological targets similarity
C: networks similarity
D: cell-based bioactivity similarity
E: similarity based on clinical data