Structure

Physi-Chem Properties

Molecular Weight:  480.31
Volume:  497.581
LogP:  1.367
LogD:  0.122
LogS:  -3.169
# Rotatable Bonds:  5
TPSA:  138.45
# H-Bond Aceptor:  7
# H-Bond Donor:  6
# Rings:  4
# Heavy Atoms:  7

MedChem Properties

QED Drug-Likeness Score:  0.331
Synthetic Accessibility Score:  5.338
Fsp3:  0.889
Lipinski Rule-of-5:  Accepted
Pfizer Rule:  Accepted
GSK Rule:  Rejected
BMS Rule:  0
Golden Triangle Rule:  Accepted
Chelating Alert:  0
PAINS Alert:  0

ADMET Properties (ADMETlab2.0)

ADMET: Absorption

Caco-2 Permeability:  -4.971
MDCK Permeability:  7.020650627964642e-06
Pgp-inhibitor:  0.013
Pgp-substrate:  0.971
Human Intestinal Absorption (HIA):  0.102
20% Bioavailability (F20%):  0.642
30% Bioavailability (F30%):  0.053

ADMET: Distribution

Blood-Brain-Barrier Penetration (BBB):  0.367
Plasma Protein Binding (PPB):  53.396087646484375%
Volume Distribution (VD):  0.769
Pgp-substrate:  29.262924194335938%

ADMET: Metabolism

CYP1A2-inhibitor:  0.002
CYP1A2-substrate:  0.254
CYP2C19-inhibitor:  0.005
CYP2C19-substrate:  0.669
CYP2C9-inhibitor:  0.009
CYP2C9-substrate:  0.121
CYP2D6-inhibitor:  0.001
CYP2D6-substrate:  0.04
CYP3A4-inhibitor:  0.122
CYP3A4-substrate:  0.335

ADMET: Excretion

Clearance (CL):  2.806
Half-life (T1/2):  0.561

ADMET: Toxicity

hERG Blockers:  0.061
Human Hepatotoxicity (H-HT):  0.3
Drug-inuced Liver Injury (DILI):  0.039
AMES Toxicity:  0.132
Rat Oral Acute Toxicity:  0.603
Maximum Recommended Daily Dose:  0.95
Skin Sensitization:  0.484
Carcinogencity:  0.13
Eye Corrosion:  0.009
Eye Irritation:  0.084
Respiratory Toxicity:  0.963

Download Data

Data Type Select
General Info & Identifiers & Properties  
Structure MOL file  
Source Organisms  
Biological Activities  
Similar NPs/Drugs  

  Natural Product: NPC260268

Natural Product ID:  NPC260268
Common Name*:   20-Hydroxyecdysone
IUPAC Name:   (2S,3R,5R,9R,10R,13R,14S,17S)-2,3,14-trihydroxy-10,13-dimethyl-17-[(2R,3R)-2,3,6-trihydroxy-6-methylheptan-2-yl]-2,3,4,5,9,11,12,15,16,17-decahydro-1H-cyclopenta[a]phenanthren-6-one
Synonyms:   20-Hydroxyecdyson; 20-Hydroxyecdysone; Beta-Ecdysone
Standard InCHIKey:  NKDFYOWSKOHCCO-YPVLXUMRSA-N
Standard InCHI:  InChI=1S/C27H44O7/c1-23(2,32)9-8-22(31)26(5,33)21-7-11-27(34)16-12-18(28)17-13-19(29)20(30)14-24(17,3)15(16)6-10-25(21,27)4/h12,15,17,19-22,29-34H,6-11,13-14H2,1-5H3/t15-,17-,19+,20-,21-,22+,24+,25+,26+,27+/m0/s1
SMILES:  O[C@H]1C[C@@]2(C)[C@@H](C[C@H]1O)C(=O)C=C1[C@@H]2CC[C@]2([C@@]1(O)CC[C@@H]2[C@]([C@@H](CCC(O)(C)C)O)(O)C)C
Synthetic Gene Cluster:   n.a.
ChEMBL Identifier:   CHEMBL224128
PubChem CID:   5459840
Chemical Classification**:  
  • CHEMONTID:0000000 [Organic compounds]
    • [CHEMONTID:0000012] Lipids and lipid-like molecules
      • [CHEMONTID:0000258] Steroids and steroid derivatives
        • [CHEMONTID:0001445] Bile acids, alcohols and derivatives
          • [CHEMONTID:0002194] Hydroxy bile acids, alcohols and derivatives

*Note: the InCHIKey will be temporarily assigned as the "Common Name" if no IUPAC name or alternative short name is available.
**Note: the Chemical Classification was calculated by NPClassifier Version 1.5. Reference: PMID:34662515.

  Species Source

Organism ID Organism Name Taxonomy Level Family SuperKingdom Isolation Part Collection Location Collection Time Reference
NPO8680 Polypodium niponicum Species Polypodiaceae Eukaryota n.a. n.a. n.a. DOI[10.1016/S0031-9422(00)80275-7]
NPO29535 Samadera indica Species Simaroubaceae Eukaryota n.a. n.a. n.a. DOI[10.1039/C39770000295]
NPO7574 Garcinia pyrifera Species Clusiaceae Eukaryota n.a. n.a. n.a. PMID[10978200]
NPO29535 Samadera indica Species Simaroubaceae Eukaryota n.a. n.a. n.a. PMID[11429258]
NPO15077 Achyranthes bidentata Species Amaranthaceae Eukaryota n.a. n.a. n.a. PMID[11430011]
NPO11017 Silene fortunei Species Caryophyllaceae Eukaryota n.a. n.a. n.a. PMID[12444678]
NPO22686 Gentiana macrophylla Species Gentianaceae Eukaryota n.a. root n.a. PMID[16335823]
NPO2798 Geranium thunbergii Species Geraniaceae Eukaryota n.a. whole plant n.a. PMID[17225459]
NPO10008 Tinospora capillipes Species Menispermaceae Eukaryota n.a. root n.a. PMID[17340259]
NPO20751 Hypserpa nitida Species Menispermaceae Eukaryota n.a. n.a. n.a. PMID[17723297]
NPO22874 Bombyx mori Species Bombycidae Eukaryota n.a. n.a. n.a. PMID[18071251]
NPO9248 Cystodytes dellechiajei Species Polycitoridae Eukaryota n.a. n.a. n.a. PMID[1812214]
NPO22874 Bombyx mori Species Bombycidae Eukaryota n.a. faeces n.a. PMID[18323202]
NPO12525 Eriosema chinense Species Fabaceae Eukaryota Roots n.a. n.a. PMID[19555123]
NPO6964 Cistanche tubulosa Species Orobanchaceae Eukaryota fresh stems n.a. n.a. PMID[20159656]
NPO9248 Cystodytes dellechiajei Species Polycitoridae Eukaryota n.a. n.a. n.a. PMID[20491501]
NPO27 Gentiana dahurica Species Gentianaceae Eukaryota n.a. root n.a. PMID[22233034]
NPO30517 Paris polyphylla Species Melanthiaceae Eukaryota n.a. n.a. n.a. PMID[22663190]
NPO20775 Populus tremuloides Species Salicaceae Eukaryota n.a. n.a. n.a. PMID[24248582]
NPO16653 Matteuccia struthiopteris Species Onocleaceae Eukaryota rhizomes Liaoning province, China 2011-SEP PMID[25927664]
NPO9835 Catalpa ovata Species Bignoniaceae Eukaryota stem bark Medicinal Plant Garden, College of Pharmacy, Ewha Womans University 2013-DEC PMID[28787158]
NPO25734 Tinospora sagittata Species Menispermaceae Eukaryota n.a. n.a. n.a. PMID[28836430]
NPO26763 Rhododendron micranthum Species Ericaceae Eukaryota Leaves n.a. n.a. PMID[30452260]
NPO362 Gentiana crassicaulis Species Gentianaceae Eukaryota n.a. n.a. n.a. PMID[33052051]
NPO40263 Parazoanthus sp. Species Parazoanthidae Eukaryota n.a. n.a. n.a. PMID[7769393]
NPO15630 Manduca sexta Species Sphingidae Eukaryota n.a. n.a. n.a. PMID[8748375]
NPO7049 Trichocolea tomentella Species Trichocoleaceae Eukaryota n.a. n.a. n.a. PMID[8792619]
NPO29535 Samadera indica Species Simaroubaceae Eukaryota n.a. stem n.a. PMID[8945767]
NPO22686 Gentiana macrophylla Species Gentianaceae Eukaryota n.a. root n.a. PMID[9397205]
NPO9835 Catalpa ovata Species Bignoniaceae Eukaryota n.a. n.a. n.a. PMID[9599262]
NPO11017 Silene fortunei Species Caryophyllaceae Eukaryota n.a. n.a. n.a. PMID[9917300]
NPO26164 Lablab purpureus Species Fabaceae Eukaryota Fruit n.a. n.a. Database[FooDB]
NPO29532 Vigna angularis Species Fabaceae Eukaryota Leaf Diffusate n.a. n.a. Database[FooDB]
NPO29532 Vigna angularis Species Fabaceae Eukaryota Seed n.a. n.a. Database[FooDB]
NPO26164 Lablab purpureus Species Fabaceae Eukaryota Seed n.a. n.a. Database[FooDB]
NPO29532 Vigna angularis Species Fabaceae Eukaryota n.a. n.a. Database[FooDB]
NPO26164 Lablab purpureus Species Fabaceae Eukaryota n.a. n.a. Database[FooDB]
NPO16653 Matteuccia struthiopteris Species Onocleaceae Eukaryota n.a. n.a. Database[FooDB]
NPO29532 Vigna angularis Species Fabaceae Eukaryota n.a. n.a. Database[FooDB]
NPO15077 Achyranthes bidentata Species Amaranthaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO11017 Silene fortunei Species Caryophyllaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO22686 Gentiana macrophylla Species Gentianaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO13426 Lemmaphyllum microphyllum Species Polypodiaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO13420 Osmunda japonica Species Osmundaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO8681 Artemisia lactiflora Species Asteraceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO30517 Paris polyphylla Species Melanthiaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO20775 Populus tremuloides Species Salicaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO26763 Rhododendron micranthum Species Ericaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO8133 Woodwardia orientalis Species Blechnaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO8680 Polypodium niponicum Species Polypodiaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO20352 Gentiana straminea Species Gentianaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO31506 Lychnis fulgens Species Caryophyllaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO14123 Achyranthes fauriei Species Amaranthaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO27 Gentiana dahurica Species Gentianaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO29970 Blechnum minus Species Blechnaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO22874 Bombyx mori Species Bombycidae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO11785 Citrus hassaku Species Rutaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO2551 Plumbagella micrantha Species Plumbaginaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO7538 Cyanotis vaga Species Commelinaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO28696 Rhaponticum uniflorum Species Asteraceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO20168 Melilotus albus Species Fabaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO16653 Matteuccia struthiopteris Species Onocleaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO362 Gentiana crassicaulis Species Gentianaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO10008 Tinospora capillipes Species Menispermaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO12373 Vinca minor Species Apocynaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO12993 Polypodium vulgare Species Polypodiaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO9835 Catalpa ovata Species Bignoniaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO6964 Cistanche tubulosa Species Orobanchaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO29532 Vigna angularis Species Fabaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO7730 Commiphora myrrha Species Burseraceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO13087 Pteridium aquilinum Species Dennstaedtiaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO29532 Vigna angularis Species Fabaceae Eukaryota Seeds n.a. Database[Phenol-Explorer]
NPO17283 Rhizoma dryopteris crassirhizomae n.a. n.a. n.a. n.a. n.a. n.a. Database[TCMID]
NPO27487 Silene banksia Species Caryophyllaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO8680 Polypodium niponicum Species Polypodiaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO25734 Tinospora sagittata Species Menispermaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO20168 Melilotus albus Species Fabaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO20352 Gentiana straminea Species Gentianaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO23802 Styrax formosanus Species Styracaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO829 Vaccaria hispanica Species Caryophyllaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO15077 Achyranthes bidentata Species Amaranthaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO13087 Pteridium aquilinum Species Dennstaedtiaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO8681 Artemisia lactiflora Species Asteraceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO26763 Rhododendron micranthum Species Ericaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO11017 Silene fortunei Species Caryophyllaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO27 Gentiana dahurica Species Gentianaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO22686 Gentiana macrophylla Species Gentianaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO29532 Vigna angularis Species Fabaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO22014 Dysphania botrys Species Chenopodiaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO362 Gentiana crassicaulis Species Gentianaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO16653 Matteuccia struthiopteris Species Onocleaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO9835 Catalpa ovata Species Bignoniaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO22303 Rhizoma paridis n.a. n.a. n.a. n.a. n.a. n.a. Database[TCMID]
NPO26899 Cheilanthes argentea Species Pteridaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO12993 Polypodium vulgare Species Polypodiaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO20775 Populus tremuloides Species Salicaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO8133 Woodwardia orientalis Species Blechnaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO12373 Vinca minor Species Apocynaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO13420 Osmunda japonica Species Osmundaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO9698 Parablechnum minus Species Blechnaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO22874 Bombyx mori Species Bombycidae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO15354.1 Vicia sativa subsp. nigra Subspecies Fabaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO6964 Cistanche tubulosa Species Orobanchaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO7538 Cyanotis vaga Species Commelinaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO13426 Lemmaphyllum microphyllum Species Polypodiaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO2551 Plumbagella micrantha Species Plumbaginaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO7730 Commiphora myrrha Species Burseraceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO10008 Tinospora capillipes Species Menispermaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO14123 Achyranthes fauriei Species Amaranthaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO11785 Citrus hassaku Species Rutaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO27472 Daiswa polyphylla Species Melanthiaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO28696 Rhaponticum uniflorum Species Asteraceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO12993 Polypodium vulgare Species Polypodiaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO27 Gentiana dahurica Species Gentianaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO8680 Polypodium niponicum Species Polypodiaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO30517 Paris polyphylla Species Melanthiaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO16653 Matteuccia struthiopteris Species Onocleaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO22874 Bombyx mori Species Bombycidae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO15077 Achyranthes bidentata Species Amaranthaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO26763 Rhododendron micranthum Species Ericaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO28696 Rhaponticum uniflorum Species Asteraceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO22686 Gentiana macrophylla Species Gentianaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO30113 Cistanche tubelosa Species Orobanchaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO362 Gentiana crassicaulis Species Gentianaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO8133 Woodwardia orientalis Species Blechnaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO9835 Catalpa ovata Species Bignoniaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO13420 Osmunda japonica Species Osmundaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO6964 Cistanche tubulosa Species Orobanchaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO25734 Tinospora sagittata Species Menispermaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO6752 Melandryum firmum n.a. n.a. n.a. n.a. n.a. n.a. Database[TM-MC]
NPO27 Gentiana dahurica Species Gentianaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO27472 Daiswa polyphylla Species Melanthiaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO15077 Achyranthes bidentata Species Amaranthaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO10008 Tinospora capillipes Species Menispermaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO20352 Gentiana straminea Species Gentianaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO23189 Achyranthes japonica Species Amaranthaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO22699 Echinops setifer Species Asteraceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO29532 Vigna angularis Species Fabaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO829 Vaccaria hispanica Species Caryophyllaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO2798 Geranium thunbergii Species Geraniaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO14123 Achyranthes fauriei Species Amaranthaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO4163 Echinopsis latifolius Species Cactaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO10861 Dipsacus asper Species Caprifoliaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO28696 Rhaponticum uniflorum Species Asteraceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO22686 Gentiana macrophylla Species Gentianaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO26164 Lablab purpureus Species Fabaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO362 Gentiana crassicaulis Species Gentianaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO11531 Duguetia calycina Species Annonaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO26164 Lablab purpureus Species Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO829 Vaccaria hispanica Species Caryophyllaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO27472 Daiswa polyphylla Species Melanthiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO13426 Lemmaphyllum microphyllum Species Polypodiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO29451 Clostridium tertium Species Clostridiaceae Bacteria n.a. n.a. n.a. Database[UNPD]
NPO22014 Dysphania botrys Species Chenopodiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO11214 Rivina humilis Species Petiveriaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO22686 Gentiana macrophylla Species Gentianaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO29172 Ricasolia amplissima Species Lobariaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO12030 Streptomyces yokosukanensis Species Streptomycetaceae Bacteria n.a. n.a. n.a. Database[UNPD]
NPO28013 Grifola gargal Species Schizophyllaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO28529 Roldana lineolata Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO16653 Matteuccia struthiopteris Species Onocleaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO7049 Trichocolea tomentella Species Trichocoleaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO11785 Citrus hassaku Species Rutaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO22149 Rhodella reticulata Species Rhodellaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO7733 Aplidium haouarianum Species Polyclinidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO25734 Tinospora sagittata Species Menispermaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO29029 Ophistreptus levis n.a. n.a. n.a. n.a. n.a. n.a. Database[UNPD]
NPO7313 Epirrhoe sperryi Species Geometridae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO15630 Manduca sexta Species Sphingidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO362 Gentiana crassicaulis Species Gentianaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO12516 Phalaris canariensis Species Poaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO29128 Pimpinella heyneana Species Apiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO28951 Manglietia phuthoensis Species Magnoliaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO5727 Hymenothrix wislizenii Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO22268 Beilschmiedia oligandra Species Lauraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO8681 Artemisia lactiflora Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO21929 Artemisia halophila Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO27944 Cotoneaster splendens Species Rosaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO10861 Dipsacus asper Species Caprifoliaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO28696 Rhaponticum uniflorum Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO9627 Plantago maritima Species Plantaginaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO18062 Tapinella atrotomentosa Species Tapinellaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO11017 Silene fortunei Species Caryophyllaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO12858 Jacaranda chelonia Species Bignoniaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO11032 Coutarea latifolia Species Rubiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO2798 Geranium thunbergii Species Geraniaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO28866 Haematomma ochrophaeum Species Haematommataceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO20168 Melilotus albus Species Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO29205 Vepris fitoravina Species Rutaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO1776 Attalea excelsa Species Arecaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO21964 Myoporum deserti Species Scrophulariaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO4842 Limonium vulgare Species Plumbaginaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO29535 Samadera indica Species Simaroubaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO5287 Strychnos cathayensis Species Loganiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO6964 Cistanche tubulosa Species Orobanchaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO9835 Catalpa ovata Species Bignoniaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO29173 Leucadendron adscendens Species Proteaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO7730 Commiphora myrrha Species Burseraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO2551 Plumbagella micrantha Species Plumbaginaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO15077 Achyranthes bidentata Species Amaranthaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO28900 Planobispora rosea Species Streptosporangiaceae Bacteria n.a. n.a. n.a. Database[UNPD]
NPO28846 Doris nobilis Species Dorididae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO26763 Rhododendron micranthum Species Ericaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO8389 Ophryosporus floribundus Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO12411 Eriostemon spicatus Species Rutaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO27 Gentiana dahurica Species Gentianaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO28115 Raphicerus melanotis Species Bovidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO11123 Kalanchoe prolifera Species Crassulaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO14025 Senna nomame Species Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO20775 Populus tremuloides Species Salicaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO9698 Parablechnum minus Species Blechnaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO8139 Clostridium paraputrificum Species Clostridiaceae Bacteria n.a. n.a. n.a. Database[UNPD]
NPO3991 Candida apicola Species n.a. Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO20621 Vicia variabilis Species Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO13087 Pteridium aquilinum Species Dennstaedtiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO7538 Cyanotis vaga Species Commelinaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO23195 Florestina tripteris Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO8133 Woodwardia orientalis Species Blechnaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO716 Greenwayodendron oliveri Species Annonaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO29489 Garcinia opaca Species Clusiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO12373 Vinca minor Species Apocynaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO18494 Carassea connexa Species Cladoniaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO28271 Persoonia elliptica Species Proteaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO28886 Acacia latifolia Species Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO23802 Styrax formosanus Species Styracaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO23926 Smirnowia turkestana Species Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO15354.1 Vicia sativa subsp. nigra Subspecies Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO28163 Phlomis linearis Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO10008 Tinospora capillipes Species Menispermaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO7574 Garcinia pyrifera Species Clusiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO28972 Comatula solaris Species Comatulidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO29416 Rhodophyllus nidorosus Species Entolomataceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO12525 Eriosema chinense Species Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO20352 Gentiana straminea Species Gentianaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO27659 Tanacetum parthenifolium Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO11692 Ranunculus sieboldi Species Ranunculaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO13121 Crepidiastrum sonchifolium Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO9572 Myrtopsis sellingii Species Rutaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO21630 Streptomyces shiodaensis Species Streptomycetaceae Bacteria n.a. n.a. n.a. Database[UNPD]
NPO1557 Rhizoplaca chrysoleuca Species Lecanoraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO8680 Polypodium niponicum Species Polypodiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO9248 Cystodytes dellechiajei Species Polycitoridae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO29532 Vigna angularis Species Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO28482 Blechnum regnellianum Species Blechnaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO24755 Abies nordmanniana Species Pinaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO12971 Payena lucida Species Sapotaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO20751 Hypserpa nitida Species Menispermaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO27487 Silene banksia Species Caryophyllaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO12993 Polypodium vulgare Species Polypodiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO22874 Bombyx mori Species Bombycidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO26899 Cheilanthes argentea Species Pteridaceae Eukaryota n.a. n.a. n.a. Database[UNPD]

☑ Note for Reference:
In addition to directly collecting NP source organism data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated them from below databases:
UNPD: Universal Natural Products Database [PMID: 23638153].
StreptomeDB: a database of streptomycetes natural products [PMID: 33051671].
TM-MC: a database of medicinal materials and chemical compounds in Northeast Asian traditional medicine [PMID: 26156871].
TCM@Taiwan: a Traditional Chinese Medicine database [PMID: 21253603].
TCMID: a Traditional Chinese Medicine database [PMID: 29106634].
TCMSP: The traditional Chinese medicine systems pharmacology database and analysis platform [PMID: 24735618].
HerDing: a herb recommendation system to treat diseases using genes and chemicals [PMID: 26980517].
MetaboLights: a metabolomics database [PMID: 27010336].
FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].

  NP Quantity Composition/Concentration

Organism ID NP ID Organism Material Preparation Organism Part NP Quantity (Standard) NP Quantity (Minimum) NP Quantity (Maximum) Quantity Unit Reference

☑ Note for Reference:
In addition to directly collecting NP quantitative data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated NP quantitative records for specific NP domains (e.g., NPS from foods or herbs) from domain-specific databases. These databases include:
DUKE: Dr. Duke's Phytochemical and Ethnobotanical Databases.
PHENOL EXPLORER: is the first comprehensive database on polyphenol content in foods [PMID: 24103452], its homepage can be accessed at here.
FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].

  Biological Activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference
NPT3064 Individual Protein Ecdysone receptor Drosophila melanogaster IC50 = 45.71 nM PMID[497117]
NPT4932 Individual Protein Ecdysone receptor Lucilia cuprina IC50 = 5500.0 nM PMID[497118]
NPT1098 Individual Protein Eyes absent homolog 2 Homo sapiens Potency n.a. 17782.8 nM PMID[497119]
NPT1098 Individual Protein Eyes absent homolog 2 Homo sapiens Potency n.a. 733271.3 nM PMID[497119]
NPT10 Individual Protein Geminin Homo sapiens Potency n.a. 1412.5 nM PMID[497119]
NPT66 Individual Protein Acetylcholinesterase Electrophorus electricus Inhibition = 3.26 % PMID[497122]
NPT439 Individual Protein Butyrylcholinesterase Homo sapiens Inhibition = 71.2 % PMID[497125]
NPT439 Individual Protein Butyrylcholinesterase Homo sapiens IC50 = 506.0 ug.mL-1 PMID[497125]
NPT4939 Organism Acyrthosiphon pisum Acyrthosiphon pisum LC50 = 1.07 ppm PMID[497115]
NPT2 Others Unspecified IC50 = 24000.0 nM PMID[497118]
NPT6 Organism Plasmodium falciparum Plasmodium falciparum Potency n.a. 11689.1 nM PMID[497119]
NPT8 Individual Protein DNA polymerase iota Homo sapiens Potency n.a. 28183.8 nM PMID[497119]
NPT668 Individual Protein P-glycoprotein 1 Homo sapiens Ratio = 1.76 n.a. PMID[497121]
NPT668 Individual Protein P-glycoprotein 1 Homo sapiens FICI = 2.0 n.a. PMID[497121]
NPT668 Individual Protein P-glycoprotein 1 Homo sapiens FICI = 2.02 n.a. PMID[497121]
NPT668 Individual Protein P-glycoprotein 1 Homo sapiens FICI = 2.04 n.a. PMID[497121]
NPT67 Individual Protein Cholinesterase Equus caballus Inhibition = -3.01 % PMID[497122]
NPT5226 Protein Complex Ecdysone receptor Spodoptera frugiperda IC50 = 165.96 nM PMID[497123]
NPT3079 Protein Complex Ecdysone receptor Nezara viridula IC50 = 1047.13 nM PMID[497123]
NPT5227 Protein Complex Ecdysone receptor Leptinotarsa decemlineata IC50 = 436.52 nM PMID[497123]
NPT5228 Protein Complex Ecdysone receptor Drosophila melanogaster IC50 = 45.71 nM PMID[497123]
NPT3079 Protein Complex Ecdysone receptor Nezara viridula Ki = 3000.0 nM PMID[497123]
NPT3079 Protein Complex Ecdysone receptor Nezara viridula IC50 = 4500.0 nM PMID[497123]
NPT3079 Protein Complex Ecdysone receptor Nezara viridula Ki = 2500.0 nM PMID[497123]
NPT3079 Protein Complex Ecdysone receptor Nezara viridula IC50 = 3000.0 nM PMID[497123]
NPT73 Individual Protein Solute carrier organic anion transporter family member 1B1 Homo sapiens Inhibition = 114.99 % PMID[497124]
NPT72 Individual Protein Solute carrier organic anion transporter family member 1B3 Homo sapiens Inhibition = 127.12 % PMID[497124]
NPT35 Others n.a. IC50 = 262.45 ug.mL-1 PMID[497125]
NPT35 Others n.a. IC50 = 98.74 ug.mL-1 PMID[497125]
NPT35 Others n.a. IC50 = 155.82 ug.mL-1 PMID[497125]
NPT35 Others n.a. Activity = 112.35 micromol/min PMID[497125]
NPT18 Organism Pseudomonas aeruginosa Pseudomonas aeruginosa MIC = 62.0 ug.mL-1 PMID[497125]
NPT19 Organism Escherichia coli Escherichia coli MIC = 125.0 ug.mL-1 PMID[497125]
NPT16 Organism Staphylococcus aureus Staphylococcus aureus MIC = 125.0 ug.mL-1 PMID[497125]
NPT175 Organism Enterococcus faecalis Enterococcus faecalis MIC = 125.0 ug.mL-1 PMID[497125]
NPT35 Others n.a. T1/2 = 1.39 hr PMID[497126]
NPT35 Others n.a. Drug metabolism = 0.84 % PMID[497126]
NPT35 Others n.a. Drug metabolism = 24.5 % PMID[497126]
NPT35 Others n.a. Drug metabolism = 40.0 % PMID[497126]
NPT2 Others Unspecified Ratio CC50/EC50 > 13.1 n.a. PMID[497127]
NPT27 Others Unspecified CC50 > 700000.0 nM PMID[497127]
NPT194 Organism Dengue virus 2 Dengue virus 2 EC50 = 53550.0 nM PMID[497127]
NPT20555 ORGANISM SARS-CoV-2 Severe acute respiratory syndrome coronavirus 2 IC50 > 20000.0 nM PMID[497128]
NPT20555 ORGANISM SARS-CoV-2 Severe acute respiratory syndrome coronavirus 2 IC50 > 19952.62 nM PMID[497128]

☑ Note for Activity Records:
☉ The quantitative biological activities were primarily integrated from ChEMBL (Version-30) database and were also directly collected from PubMed literature. PubMed PMID was provided as the reference link for each activity record.

  Chemically structural similarity: I. Similar Active Natural Products in NPASS

Top-200 similar NPs were calculated against the active-NP-set (includes 4,3285 NPs with experimentally-derived bioactivity available in NPASS)

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules. Tc lies between [0, 1] where '1' indicates the highest similarity. What is Tanimoto coefficient

●  The left chart: Distribution of similarity level between NPC260268 and all remaining natural products in the NPASS database.
●  The right table: Most similar natural products (Tc>=0.56 or Top200).

Similarity Score Similarity Level Natural Product ID
1.0 High Similarity NPC49958
1.0 High Similarity NPC48733
1.0 High Similarity NPC296945
1.0 High Similarity NPC50692
1.0 High Similarity NPC319077
1.0 High Similarity NPC97202
1.0 High Similarity NPC202167
1.0 High Similarity NPC171137
1.0 High Similarity NPC302607
1.0 High Similarity NPC85829
1.0 High Similarity NPC152695
1.0 High Similarity NPC150531
1.0 High Similarity NPC214264
1.0 High Similarity NPC476027
0.9898 High Similarity NPC475060
0.9898 High Similarity NPC83744
0.9898 High Similarity NPC220229
0.9897 High Similarity NPC204833
0.9897 High Similarity NPC209502
0.9798 High Similarity NPC329417
0.9798 High Similarity NPC217201
0.9796 High Similarity NPC149047
0.97 High Similarity NPC11710
0.9697 High Similarity NPC477916
0.9691 High Similarity NPC477915
0.9485 High Similarity NPC154072
0.9417 High Similarity NPC207251
0.9412 High Similarity NPC76084
0.9327 High Similarity NPC73300
0.9327 High Similarity NPC108721
0.9327 High Similarity NPC962
0.9327 High Similarity NPC250109
0.9327 High Similarity NPC317210
0.9238 High Similarity NPC326542
0.9216 High Similarity NPC65941
0.9151 High Similarity NPC49492
0.9151 High Similarity NPC266728
0.9126 High Similarity NPC214644
0.91 High Similarity NPC473424
0.9072 High Similarity NPC271195
0.902 High Similarity NPC323834
0.901 High Similarity NPC191892
0.8969 High Similarity NPC111015
0.8899 High Similarity NPC475041
0.8835 High Similarity NPC166607
0.8835 High Similarity NPC257353
0.8818 High Similarity NPC109973
0.8788 High Similarity NPC249954
0.8776 High Similarity NPC196227
0.875 High Similarity NPC165873
0.8738 High Similarity NPC160843
0.87 High Similarity NPC190554
0.87 High Similarity NPC18509
0.8687 High Similarity NPC259286
0.8687 High Similarity NPC200702
0.8673 High Similarity NPC69454
0.8661 High Similarity NPC222688
0.8661 High Similarity NPC28532
0.8661 High Similarity NPC269642
0.8641 High Similarity NPC117185
0.8641 High Similarity NPC311612
0.8641 High Similarity NPC247957
0.8641 High Similarity NPC55872
0.8641 High Similarity NPC249187
0.8614 High Similarity NPC103051
0.86 High Similarity NPC49371
0.86 High Similarity NPC471463
0.8586 High Similarity NPC472977
0.8586 High Similarity NPC8993
0.8586 High Similarity NPC472976
0.8571 High Similarity NPC63748
0.8571 High Similarity NPC116726
0.8571 High Similarity NPC233116
0.8571 High Similarity NPC473998
0.8571 High Similarity NPC185
0.8571 High Similarity NPC475806
0.8558 High Similarity NPC75531
0.8558 High Similarity NPC149124
0.8558 High Similarity NPC28656
0.8558 High Similarity NPC72255
0.8557 High Similarity NPC309603
0.8557 High Similarity NPC477943
0.8557 High Similarity NPC473999
0.8545 High Similarity NPC471854
0.8544 High Similarity NPC87351
0.8544 High Similarity NPC204450
0.8544 High Similarity NPC195290
0.8529 High Similarity NPC144956
0.8529 High Similarity NPC316964
0.8529 High Similarity NPC110149
0.8529 High Similarity NPC218383
0.8529 High Similarity NPC15390
0.8505 High Similarity NPC235077
0.85 High Similarity NPC473170
0.85 High Similarity NPC472932
0.85 High Similarity NPC472485
0.8485 Intermediate Similarity NPC472496
0.8485 Intermediate Similarity NPC472930
0.8485 Intermediate Similarity NPC109305
0.8469 Intermediate Similarity NPC48010
0.8469 Intermediate Similarity NPC136801
0.8469 Intermediate Similarity NPC100313
0.8462 Intermediate Similarity NPC236390
0.8455 Intermediate Similarity NPC196931
0.8454 Intermediate Similarity NPC328539
0.8416 Intermediate Similarity NPC117133
0.84 Intermediate Similarity NPC196485
0.84 Intermediate Similarity NPC245972
0.8396 Intermediate Similarity NPC43285
0.8396 Intermediate Similarity NPC58370
0.8396 Intermediate Similarity NPC144459
0.8384 Intermediate Similarity NPC472978
0.8384 Intermediate Similarity NPC155304
0.8384 Intermediate Similarity NPC168027
0.8384 Intermediate Similarity NPC185936
0.8381 Intermediate Similarity NPC477812
0.8367 Intermediate Similarity NPC472973
0.8367 Intermediate Similarity NPC2983
0.8367 Intermediate Similarity NPC186688
0.8367 Intermediate Similarity NPC86319
0.8367 Intermediate Similarity NPC32830
0.8367 Intermediate Similarity NPC275740
0.8365 Intermediate Similarity NPC22388
0.8365 Intermediate Similarity NPC234892
0.8365 Intermediate Similarity NPC136289
0.8365 Intermediate Similarity NPC293753
0.835 Intermediate Similarity NPC474720
0.835 Intermediate Similarity NPC476274
0.835 Intermediate Similarity NPC83709
0.8349 Intermediate Similarity NPC280782
0.8333 Intermediate Similarity NPC320306
0.8333 Intermediate Similarity NPC107243
0.8333 Intermediate Similarity NPC474938
0.8333 Intermediate Similarity NPC474785
0.8317 Intermediate Similarity NPC53565
0.8317 Intermediate Similarity NPC297199
0.8317 Intermediate Similarity NPC472824
0.8304 Intermediate Similarity NPC257457
0.8304 Intermediate Similarity NPC311554
0.8302 Intermediate Similarity NPC60681
0.83 Intermediate Similarity NPC470376
0.83 Intermediate Similarity NPC470375
0.83 Intermediate Similarity NPC475255
0.83 Intermediate Similarity NPC474736
0.8286 Intermediate Similarity NPC26478
0.8286 Intermediate Similarity NPC111323
0.8286 Intermediate Similarity NPC140723
0.8283 Intermediate Similarity NPC134321
0.8283 Intermediate Similarity NPC320026
0.8269 Intermediate Similarity NPC472924
0.8269 Intermediate Similarity NPC476223
0.8269 Intermediate Similarity NPC302537
0.8269 Intermediate Similarity NPC163372
0.8269 Intermediate Similarity NPC476240
0.8269 Intermediate Similarity NPC224720
0.8269 Intermediate Similarity NPC471401
0.8269 Intermediate Similarity NPC81530
0.8265 Intermediate Similarity NPC143767
0.8265 Intermediate Similarity NPC474668
0.8265 Intermediate Similarity NPC133588
0.8265 Intermediate Similarity NPC193360
0.8265 Intermediate Similarity NPC470417
0.8265 Intermediate Similarity NPC131470
0.8261 Intermediate Similarity NPC473979
0.8252 Intermediate Similarity NPC197386
0.8252 Intermediate Similarity NPC48647
0.8252 Intermediate Similarity NPC186810
0.8252 Intermediate Similarity NPC10364
0.8252 Intermediate Similarity NPC114274
0.8252 Intermediate Similarity NPC477854
0.8247 Intermediate Similarity NPC472985
0.8247 Intermediate Similarity NPC469994
0.8247 Intermediate Similarity NPC472986
0.8241 Intermediate Similarity NPC470257
0.8235 Intermediate Similarity NPC173272
0.8235 Intermediate Similarity NPC192428
0.8235 Intermediate Similarity NPC477853
0.823 Intermediate Similarity NPC61520
0.8224 Intermediate Similarity NPC472925
0.8224 Intermediate Similarity NPC230541
0.8218 Intermediate Similarity NPC292793
0.8218 Intermediate Similarity NPC299100
0.8218 Intermediate Similarity NPC103527
0.8218 Intermediate Similarity NPC470957
0.8218 Intermediate Similarity NPC280804
0.8218 Intermediate Similarity NPC470958
0.8214 Intermediate Similarity NPC218970
0.8208 Intermediate Similarity NPC471293
0.8205 Intermediate Similarity NPC470882
0.82 Intermediate Similarity NPC189520
0.819 Intermediate Similarity NPC119601
0.819 Intermediate Similarity NPC308726
0.819 Intermediate Similarity NPC185530
0.8182 Intermediate Similarity NPC77263
0.8182 Intermediate Similarity NPC472971
0.8182 Intermediate Similarity NPC472002
0.8182 Intermediate Similarity NPC71348
0.8182 Intermediate Similarity NPC472970
0.8182 Intermediate Similarity NPC250592
0.8182 Intermediate Similarity NPC1015

  Chemically structural similarity: II. Similar Clinical/Approved Drugs

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules.

●  The left chart: Distribution of similarity level between NPC260268 and all drugs/candidates.
●  The right table: Most similar clinical/approved drugs (Tc>=0.56 or Top200).

Similarity Score Similarity Level Drug ID Developmental Stage
0.8725 High Similarity NPD5211 Phase 2
0.87 High Similarity NPD4755 Approved
0.8558 High Similarity NPD5141 Approved
0.8557 High Similarity NPD5328 Approved
0.8529 High Similarity NPD5285 Approved
0.8529 High Similarity NPD4700 Approved
0.8529 High Similarity NPD4696 Approved
0.8529 High Similarity NPD5286 Approved
0.8505 High Similarity NPD4634 Approved
0.8485 Intermediate Similarity NPD4202 Approved
0.8447 Intermediate Similarity NPD5223 Approved
0.8384 Intermediate Similarity NPD6079 Approved
0.8365 Intermediate Similarity NPD5224 Approved
0.8365 Intermediate Similarity NPD5225 Approved
0.8365 Intermediate Similarity NPD5226 Approved
0.8365 Intermediate Similarity NPD4633 Approved
0.8302 Intermediate Similarity NPD6675 Approved
0.8302 Intermediate Similarity NPD7128 Approved
0.8302 Intermediate Similarity NPD5739 Approved
0.8302 Intermediate Similarity NPD6402 Approved
0.8286 Intermediate Similarity NPD4754 Approved
0.8286 Intermediate Similarity NPD5174 Approved
0.8286 Intermediate Similarity NPD5175 Approved
0.8273 Intermediate Similarity NPD4632 Approved
0.8247 Intermediate Similarity NPD3618 Phase 1
0.8241 Intermediate Similarity NPD6373 Approved
0.8241 Intermediate Similarity NPD6372 Approved
0.8235 Intermediate Similarity NPD4697 Phase 3
0.8148 Intermediate Similarity NPD7320 Approved
0.8148 Intermediate Similarity NPD6899 Approved
0.8148 Intermediate Similarity NPD6881 Approved
0.8131 Intermediate Similarity NPD4768 Approved
0.8131 Intermediate Similarity NPD4767 Approved
0.8091 Intermediate Similarity NPD6650 Approved
0.8091 Intermediate Similarity NPD6649 Approved
0.8058 Intermediate Similarity NPD5220 Clinical (unspecified phase)
0.8058 Intermediate Similarity NPD5221 Approved
0.8058 Intermediate Similarity NPD5222 Approved
0.8056 Intermediate Similarity NPD5697 Approved
0.8056 Intermediate Similarity NPD5701 Approved
0.8041 Intermediate Similarity NPD3666 Approved
0.8041 Intermediate Similarity NPD3665 Phase 1
0.8041 Intermediate Similarity NPD3133 Approved
0.8018 Intermediate Similarity NPD8297 Approved
0.8 Intermediate Similarity NPD7102 Approved
0.8 Intermediate Similarity NPD7290 Approved
0.8 Intermediate Similarity NPD4753 Phase 2
0.8 Intermediate Similarity NPD6883 Approved
0.7982 Intermediate Similarity NPD4729 Approved
0.7982 Intermediate Similarity NPD4730 Approved
0.7982 Intermediate Similarity NPD6011 Approved
0.7982 Intermediate Similarity NPD5128 Approved
0.7981 Intermediate Similarity NPD5173 Approved
0.7963 Intermediate Similarity NPD6008 Approved
0.7928 Intermediate Similarity NPD8130 Phase 1
0.7928 Intermediate Similarity NPD6617 Approved
0.7928 Intermediate Similarity NPD6401 Clinical (unspecified phase)
0.7928 Intermediate Similarity NPD6869 Approved
0.7928 Intermediate Similarity NPD6847 Approved
0.7909 Intermediate Similarity NPD6014 Approved
0.7909 Intermediate Similarity NPD6012 Approved
0.7909 Intermediate Similarity NPD6013 Approved
0.7895 Intermediate Similarity NPD6009 Approved
0.7857 Intermediate Similarity NPD4786 Approved
0.7857 Intermediate Similarity NPD6882 Approved
0.7845 Intermediate Similarity NPD6319 Approved
0.7845 Intermediate Similarity NPD6054 Approved
0.7845 Intermediate Similarity NPD6059 Approved
0.7838 Intermediate Similarity NPD5249 Phase 3
0.7838 Intermediate Similarity NPD5250 Approved
0.7838 Intermediate Similarity NPD5251 Approved
0.7838 Intermediate Similarity NPD5169 Approved
0.7838 Intermediate Similarity NPD5247 Approved
0.7838 Intermediate Similarity NPD5248 Approved
0.7838 Intermediate Similarity NPD5134 Clinical (unspecified phase)
0.7838 Intermediate Similarity NPD5135 Approved
0.7835 Intermediate Similarity NPD4221 Approved
0.7835 Intermediate Similarity NPD4223 Phase 3
0.783 Intermediate Similarity NPD7639 Approved
0.783 Intermediate Similarity NPD7640 Approved
0.7788 Intermediate Similarity NPD4629 Approved
0.7788 Intermediate Similarity NPD5210 Approved
0.7778 Intermediate Similarity NPD5329 Approved
0.7768 Intermediate Similarity NPD5127 Approved
0.7768 Intermediate Similarity NPD5216 Approved
0.7768 Intermediate Similarity NPD5215 Approved
0.7768 Intermediate Similarity NPD5217 Approved
0.7739 Intermediate Similarity NPD7115 Discovery
0.7736 Intermediate Similarity NPD7638 Approved
0.7727 Intermediate Similarity NPD6412 Phase 2
0.7712 Intermediate Similarity NPD6370 Approved
0.77 Intermediate Similarity NPD3574 Clinical (unspecified phase)
0.7677 Intermediate Similarity NPD4197 Approved
0.7667 Intermediate Similarity NPD7507 Approved
0.7653 Intermediate Similarity NPD3667 Approved
0.7647 Intermediate Similarity NPD7604 Phase 2
0.7642 Intermediate Similarity NPD6083 Phase 2
0.7642 Intermediate Similarity NPD6084 Phase 2
0.7627 Intermediate Similarity NPD6016 Approved
0.7627 Intermediate Similarity NPD5983 Phase 2
0.7627 Intermediate Similarity NPD6015 Approved
0.7596 Intermediate Similarity NPD6399 Phase 3
0.7583 Intermediate Similarity NPD7492 Approved
0.7565 Intermediate Similarity NPD5167 Approved
0.7563 Intermediate Similarity NPD5988 Approved
0.7525 Intermediate Similarity NPD5205 Approved
0.7525 Intermediate Similarity NPD4689 Approved
0.7525 Intermediate Similarity NPD4688 Approved
0.7525 Intermediate Similarity NPD4690 Approved
0.7525 Intermediate Similarity NPD4693 Phase 3
0.7525 Intermediate Similarity NPD4138 Approved
0.7521 Intermediate Similarity NPD6616 Approved
0.7521 Intermediate Similarity NPD6336 Discontinued
0.7521 Intermediate Similarity NPD6335 Approved
0.75 Intermediate Similarity NPD7515 Phase 2
0.75 Intermediate Similarity NPD5281 Approved
0.75 Intermediate Similarity NPD6274 Approved
0.75 Intermediate Similarity NPD5284 Approved
0.748 Intermediate Similarity NPD7319 Approved
0.7459 Intermediate Similarity NPD7078 Approved
0.7459 Intermediate Similarity NPD8293 Discontinued
0.7458 Intermediate Similarity NPD7101 Approved
0.7458 Intermediate Similarity NPD7100 Approved
0.7453 Intermediate Similarity NPD6356 Clinical (unspecified phase)
0.7451 Intermediate Similarity NPD4751 Clinical (unspecified phase)
0.7449 Intermediate Similarity NPD7525 Registered
0.7436 Intermediate Similarity NPD6317 Approved
0.7407 Intermediate Similarity NPD5696 Approved
0.74 Intermediate Similarity NPD4788 Approved
0.7398 Intermediate Similarity NPD6033 Approved
0.7398 Intermediate Similarity NPD7736 Approved
0.7373 Intermediate Similarity NPD6314 Approved
0.7373 Intermediate Similarity NPD6313 Approved
0.7353 Intermediate Similarity NPD5690 Phase 2
0.7353 Intermediate Similarity NPD6684 Approved
0.7353 Intermediate Similarity NPD5330 Approved
0.7353 Intermediate Similarity NPD7521 Approved
0.7353 Intermediate Similarity NPD7334 Approved
0.7353 Intermediate Similarity NPD5280 Approved
0.7353 Intermediate Similarity NPD5279 Phase 3
0.7353 Intermediate Similarity NPD6409 Approved
0.7353 Intermediate Similarity NPD7146 Approved
0.7353 Intermediate Similarity NPD4694 Approved
0.7345 Intermediate Similarity NPD5168 Approved
0.7333 Intermediate Similarity NPD6909 Approved
0.7333 Intermediate Similarity NPD6291 Clinical (unspecified phase)
0.7333 Intermediate Similarity NPD6908 Approved
0.7315 Intermediate Similarity NPD7902 Approved
0.729 Intermediate Similarity NPD5695 Phase 3
0.7281 Intermediate Similarity NPD4061 Clinical (unspecified phase)
0.7241 Intermediate Similarity NPD6053 Discontinued
0.7212 Intermediate Similarity NPD6903 Approved
0.7212 Intermediate Similarity NPD7513 Clinical (unspecified phase)
0.7207 Intermediate Similarity NPD7632 Discontinued
0.7196 Intermediate Similarity NPD7748 Approved
0.7184 Intermediate Similarity NPD4623 Approved
0.7184 Intermediate Similarity NPD4519 Discontinued
0.7172 Intermediate Similarity NPD4195 Approved
0.7167 Intermediate Similarity NPD4522 Approved
0.7167 Intermediate Similarity NPD7516 Approved
0.7157 Intermediate Similarity NPD3668 Phase 3
0.7143 Intermediate Similarity NPD6673 Approved
0.7143 Intermediate Similarity NPD6080 Approved
0.7143 Intermediate Similarity NPD6904 Approved
0.7087 Intermediate Similarity NPD7520 Clinical (unspecified phase)
0.7083 Intermediate Similarity NPD7328 Approved
0.7083 Intermediate Similarity NPD7327 Approved
0.7073 Intermediate Similarity NPD6067 Discontinued
0.7069 Intermediate Similarity NPD5955 Clinical (unspecified phase)
0.7059 Intermediate Similarity NPD6868 Approved
0.7048 Intermediate Similarity NPD6672 Approved
0.7048 Intermediate Similarity NPD5737 Approved
0.7043 Intermediate Similarity NPD5345 Clinical (unspecified phase)
0.7041 Intermediate Similarity NPD3701 Clinical (unspecified phase)
0.7037 Intermediate Similarity NPD7900 Approved
0.7037 Intermediate Similarity NPD7901 Clinical (unspecified phase)
0.7037 Intermediate Similarity NPD6001 Approved
0.7009 Intermediate Similarity NPD8035 Phase 2
0.7009 Intermediate Similarity NPD8034 Phase 2
0.7009 Intermediate Similarity NPD5693 Phase 1
0.6967 Remote Similarity NPD8377 Approved
0.6967 Remote Similarity NPD8294 Approved
0.6952 Remote Similarity NPD7524 Approved
0.6939 Remote Similarity NPD7339 Approved
0.6939 Remote Similarity NPD3703 Phase 2
0.6939 Remote Similarity NPD6942 Approved
0.6937 Remote Similarity NPD4225 Approved
0.6935 Remote Similarity NPD8328 Phase 3
0.6916 Remote Similarity NPD4096 Approved
0.6911 Remote Similarity NPD8335 Approved
0.6911 Remote Similarity NPD8380 Approved
0.6911 Remote Similarity NPD7503 Approved
0.6911 Remote Similarity NPD8033 Approved
0.6911 Remote Similarity NPD8379 Approved
0.6911 Remote Similarity NPD8296 Approved
0.6911 Remote Similarity NPD8378 Approved
0.6903 Remote Similarity NPD5091 Approved
0.69 Remote Similarity NPD3617 Approved
0.6897 Remote Similarity NPD6686 Approved
0.6887 Remote Similarity NPD5208 Approved

  Bioactivity similarity: Similar Natural Products in NPASS

Bioactivity similarity was calculated based on bioactivity descriptors of compounds. The bioactivity descriptors were calculated by a recently developed AI algorithm Chemical Checker (CC) [Nature Biotechnology, 38:1087–1096, 2020; Nature Communications, 12:3932, 2021], which evaluated bioactivity similarities at five levels:
A: chemistry similarity;
B: biological targets similarity;
C: networks similarity;
D: cell-based bioactivity similarity;
E: similarity based on clinical data.

Those 5 categories of CC bioactivity descriptors were calculated and then subjected to manifold projection using UMAP algorithm, to project all NPs on a 2-Dimensional space. The current NP was highlighted with a small circle in the 2-D map. Below figures: left-to-right, A-to-E.

A: chemistry similarity
B: biological targets similarity
C: networks similarity
D: cell-based bioactivity similarity
E: similarity based on clinical data