Structure

Physi-Chem Properties

Molecular Weight:  676.29
Volume:  670.317
LogP:  3.439
LogD:  2.437
LogS:  -4.761
# Rotatable Bonds:  10
TPSA:  159.57
# H-Bond Aceptor:  11
# H-Bond Donor:  1
# Rings:  8
# Heavy Atoms:  11

MedChem Properties

QED Drug-Likeness Score:  0.139
Synthetic Accessibility Score:  6.716
Fsp3:  0.684
Lipinski Rule-of-5:  Rejected
Pfizer Rule:  Accepted
GSK Rule:  Rejected
BMS Rule:  0
Golden Triangle Rule:  Rejected
Chelating Alert:  0
PAINS Alert:  1

ADMET Properties (ADMETlab2.0)

ADMET: Absorption

Caco-2 Permeability:  -5.336
MDCK Permeability:  9.306997526437044e-05
Pgp-inhibitor:  0.999
Pgp-substrate:  0.862
Human Intestinal Absorption (HIA):  0.054
20% Bioavailability (F20%):  0.993
30% Bioavailability (F30%):  0.988

ADMET: Distribution

Blood-Brain-Barrier Penetration (BBB):  0.879
Plasma Protein Binding (PPB):  64.39659118652344%
Volume Distribution (VD):  0.662
Pgp-substrate:  22.13786506652832%

ADMET: Metabolism

CYP1A2-inhibitor:  0.018
CYP1A2-substrate:  0.898
CYP2C19-inhibitor:  0.392
CYP2C19-substrate:  0.64
CYP2C9-inhibitor:  0.211
CYP2C9-substrate:  0.007
CYP2D6-inhibitor:  0.007
CYP2D6-substrate:  0.022
CYP3A4-inhibitor:  0.93
CYP3A4-substrate:  0.772

ADMET: Excretion

Clearance (CL):  11.507
Half-life (T1/2):  0.005

ADMET: Toxicity

hERG Blockers:  0.27
Human Hepatotoxicity (H-HT):  0.139
Drug-inuced Liver Injury (DILI):  0.37
AMES Toxicity:  0.008
Rat Oral Acute Toxicity:  0.288
Maximum Recommended Daily Dose:  0.947
Skin Sensitization:  0.383
Carcinogencity:  0.217
Eye Corrosion:  0.003
Eye Irritation:  0.009
Respiratory Toxicity:  0.983

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  Natural Product: NPC35109

Natural Product ID:  NPC35109
Common Name*:   WZKZSZYDBUUHLB-IBBKUXAASA-N
IUPAC Name:   n.a.
Synonyms:  
Standard InCHIKey:  WZKZSZYDBUUHLB-IBBKUXAASA-N
Standard InCHI:  InChI=1S/C38H44O11/c1-8-15(2)32(42)48-14-37(45)24-11-23(24)35(5)25(37)12-22-20(13-47-17(4)39)34(44)49-38(22)26(35)10-19-18-9-21(18)36(6)28(19)29(38)27(30(40)31(36)41)16(3)33(43)46-7/h8,18,21,23-26,29,31,41,45H,9-14H2,1-7H3/b15-8+,27-16-/t18-,21-,23-,24+,25-,26+,29+,31+,35+,36+,37+,38+/m1/s1
SMILES:  COC(=O)/C(=C/1C(=O)[C@H](O)[C@@]2(C3=C(C[C@@H]4[C@@]5([C@@H]13)OC(=O)C(=C5C[C@@H]1[C@]4(C)[C@@H]3C[C@@H]3[C@@]1(O)COC(=O)/C(=C/C)/C)COC(=O)C)[C@@H]1[C@H]2C1)C)/C
Synthetic Gene Cluster:   n.a.
ChEMBL Identifier:   CHEMBL2229596
PubChem CID:   44207635
Chemical Classification**:  
  • CHEMONTID:0000000 [Organic compounds]
    • [CHEMONTID:0000012] Lipids and lipid-like molecules
      • [CHEMONTID:0000259] Prenol lipids
        • [CHEMONTID:0001553] Triterpenoids

*Note: the InCHIKey will be temporarily assigned as the "Common Name" if no IUPAC name or alternative short name is available.
**Note: the Chemical Classification was calculated by NPClassifier Version 1.5. Reference: PMID:34662515.

  Species Source

Organism ID Organism Name Taxonomy Level Family SuperKingdom Isolation Part Collection Location Collection Time Reference
NPO2300 Actinidia deliciosa Species Actinidiaceae Eukaryota Fruits Spanish DOI[10.1021/jf00010a019]
NPO2300 Actinidia deliciosa Species Actinidiaceae Eukaryota n.a. Italy DOI[10.1021/jf00016a013]
NPO2300 Actinidia deliciosa Species Actinidiaceae Eukaryota Fruits n.a. DOI[10.1021/jf00016a013]
NPO2300 Actinidia deliciosa Species Actinidiaceae Eukaryota n.a. Germany DOI[10.1021/jf00016a013]
NPO2300 Actinidia deliciosa Species Actinidiaceae Eukaryota Fruits Turkey DOI[10.1111/j.1745-4557.2003.tb00250.x]
NPO2300 Actinidia deliciosa Species Actinidiaceae Eukaryota Fruits n.a. DOI[10.17660/ActaHortic.2003.610.16]
NPO2300 Actinidia deliciosa Species Actinidiaceae Eukaryota Fruits n.a. PMID[10794642]
NPO2300 Actinidia deliciosa Species Actinidiaceae Eukaryota Fruits n.a. PMID[10820090]
NPO2300 Actinidia deliciosa Species Actinidiaceae Eukaryota Fruits n.a. PMID[11754554]
NPO2300 Actinidia deliciosa Species Actinidiaceae Eukaryota Fruits n.a. PMID[15315387]
NPO2300 Actinidia deliciosa Species Actinidiaceae Eukaryota Fruits n.a. PMID[16076125]
NPO2300 Actinidia deliciosa Species Actinidiaceae Eukaryota Fruits n.a. PMID[16920856]
NPO21178 Chloranthus serratus Species Chloranthaceae Eukaryota n.a. n.a. n.a. PMID[19053511]
NPO2300 Actinidia deliciosa Species Actinidiaceae Eukaryota Fruits n.a. PMID[19358604]
NPO2300 Actinidia deliciosa Species Actinidiaceae Eukaryota Fruits n.a. PMID[21190690]
NPO21178 Chloranthus serratus Species Chloranthaceae Eukaryota n.a. n.a. n.a. PMID[22372956]
NPO6674 Burkholderia ambifaria Species Burkholderiaceae Bacteria n.a. n.a. n.a. PMID[22988812]
NPO2300 Actinidia deliciosa Species Actinidiaceae Eukaryota Fruits n.a. PMID[23394984]
NPO2300 Actinidia deliciosa Species Actinidiaceae Eukaryota n.a. Germany PMID[23394984]
NPO2300 Actinidia deliciosa Species Actinidiaceae Eukaryota n.a. New Zealand PMID[23394984]
NPO2300 Actinidia deliciosa Species Actinidiaceae Eukaryota Fruits n.a. PMID[2413754]
NPO17386 Securidaca longepedunculata Species Polygalaceae Eukaryota n.a. n.a. n.a. PMID[24216090]
NPO21178 Chloranthus serratus Species Chloranthaceae Eukaryota n.a. n.a. n.a. PMID[27588583]
NPO15190 Chloranthus fortunei Species Chloranthaceae Eukaryota n.a. n.a. n.a. PMID[27997206]
NPO11257 Momordica dioica Species Cucurbitaceae Eukaryota n.a. n.a. n.a. PMID[30673219]
NPO21178 Chloranthus serratus Species Chloranthaceae Eukaryota n.a. n.a. n.a. PMID[30724564]
NPO2300 Actinidia deliciosa Species Actinidiaceae Eukaryota Fruits n.a. PMID[9542132]
NPO11097 Lepidium apetalum Species Brassicaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO21178 Chloranthus serratus Species Chloranthaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO21178 Chloranthus serratus Species Chloranthaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO2300 Actinidia deliciosa Species Actinidiaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO11097 Lepidium apetalum Species Brassicaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO11257 Momordica dioica Species Cucurbitaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO11097 Lepidium apetalum Species Brassicaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO11257 Momordica dioica Species Cucurbitaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO21178 Chloranthus serratus Species Chloranthaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO11097 Lepidium apetalum Species Brassicaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO11257 Momordica dioica Species Cucurbitaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO9512 Phlomis fruticosa Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO21178 Chloranthus serratus Species Chloranthaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO12891 Minasia alpestris Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO11097 Lepidium apetalum Species Brassicaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO1185 Stereocaulon strictum Species Stereocaulaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO6674 Burkholderia ambifaria Species Burkholderiaceae Bacteria n.a. n.a. n.a. Database[UNPD]
NPO468 Dryopteris oligophlebia Species Dryopteridaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO9928 Cephalaria cilicica Species Caprifoliaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO9040 Elsinoe annonae Species Elsinoaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO17386 Securidaca longepedunculata Species Polygalaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO11815 Mikania hirsutissima Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO19898 Stevia lucida Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO15190 Chloranthus fortunei Species Chloranthaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO16164 Podocarpus urbani Species Podocarpaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO12998 Salvia rubescens Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO10399 Manfreda virginica Species Asparagaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO936 Pinalia spicata Species Orchidaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO7048 Eucalyptus rariflora Species Myrtaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO2300 Actinidia deliciosa Species Actinidiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO12192 Coronilla scorpioides Species Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO9307 Ficus indica Species Ficidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO5013 Loranthus spicatus Species Loranthaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO7345 Ptilonia magellanica Species Bonnemaisoniaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO5392 Pachycereus pecten-aboriginum Species Cactaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO8484 Codonopsis lanceolata Species Campanulaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO5827 Dalea tuberculata Species Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO6256 Eucalyptus umbra Species Myrtaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO10738 Cotoneaster horizontalis Species Rosaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO3740 Trisetum flavescens Species Poaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO11555 Pterocaulon purpurascens Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO3385 Cassine transvaalensis Species Celastraceae Eukaryota n.a. n.a. n.a. Database[UNPD]

☑ Note for Reference:
In addition to directly collecting NP source organism data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated them from below databases:
UNPD: Universal Natural Products Database [PMID: 23638153].
StreptomeDB: a database of streptomycetes natural products [PMID: 33051671].
TM-MC: a database of medicinal materials and chemical compounds in Northeast Asian traditional medicine [PMID: 26156871].
TCM@Taiwan: a Traditional Chinese Medicine database [PMID: 21253603].
TCMID: a Traditional Chinese Medicine database [PMID: 29106634].
TCMSP: The traditional Chinese medicine systems pharmacology database and analysis platform [PMID: 24735618].
HerDing: a herb recommendation system to treat diseases using genes and chemicals [PMID: 26980517].
MetaboLights: a metabolomics database [PMID: 27010336].
FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].

  NP Quantity Composition/Concentration

Organism ID NP ID Organism Material Preparation Organism Part NP Quantity (Standard) NP Quantity (Minimum) NP Quantity (Maximum) Quantity Unit Reference

☑ Note for Reference:
In addition to directly collecting NP quantitative data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated NP quantitative records for specific NP domains (e.g., NPS from foods or herbs) from domain-specific databases. These databases include:
DUKE: Dr. Duke's Phytochemical and Ethnobotanical Databases.
PHENOL EXPLORER: is the first comprehensive database on polyphenol content in foods [PMID: 24103452], its homepage can be accessed at here.
FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].

  Biological Activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference
NPT1374 Cell Line WI-38 Homo sapiens IC50 = 160.0 nM PMID[559037]
NPT113 Cell Line RAW264.7 Mus musculus Activity < 50.0 % PMID[559038]
NPT2564 Organism Blumeria graminis Blumeria graminis Efficacy = 17.0 % PMID[559036]
NPT2564 Organism Blumeria graminis Blumeria graminis Efficacy = 0.0 % PMID[559036]
NPT829 Organism Puccinia recondita Puccinia recondita Efficacy = 100.0 % PMID[559036]
NPT829 Organism Puccinia recondita Puccinia recondita Efficacy = 87.0 % PMID[559036]
NPT829 Organism Puccinia recondita Puccinia recondita Efficacy = 80.0 % PMID[559036]
NPT825 Organism Phytophthora infestans Phytophthora infestans Efficacy = 93.0 % PMID[559036]
NPT825 Organism Phytophthora infestans Phytophthora infestans Efficacy = 91.0 % PMID[559036]
NPT825 Organism Phytophthora infestans Phytophthora infestans Efficacy = 29.0 % PMID[559036]
NPT635 Organism Botryotinia fuckeliana Botryotinia fuckeliana Efficacy = 36.0 % PMID[559036]
NPT635 Organism Botryotinia fuckeliana Botryotinia fuckeliana Efficacy = 14.0 % PMID[559036]
NPT635 Organism Botryotinia fuckeliana Botryotinia fuckeliana Efficacy = 7.2 % PMID[559036]
NPT724 Organism Corticium Corticium Efficacy = 69.0 % PMID[559036]
NPT724 Organism Corticium Corticium Efficacy = 50.0 % PMID[559036]
NPT1198 Organism Magnaporthe grisea Magnaporthe grisea Efficacy = 72.0 % PMID[559036]
NPT1198 Organism Magnaporthe grisea Magnaporthe grisea Efficacy = 50.0 % PMID[559036]
NPT1198 Organism Magnaporthe grisea Magnaporthe grisea Efficacy = 67.0 % PMID[559036]
NPT85 Organism Filobasidiella neoformans Cryptococcus neoformans MIC = 16.0 ug.mL-1 PMID[559036]
NPT186 Organism Candida tropicalis Candida tropicalis MIC > 128.0 ug.mL-1 PMID[559036]
NPT187 Organism Issatchenkia orientalis Pichia kudriavzevii MIC = 128.0 ug.mL-1 PMID[559036]
NPT820 Organism Clavispora lusitaniae Clavispora lusitaniae MIC = 128.0 ug.mL-1 PMID[559036]
NPT20 Organism Candida albicans Candida albicans MIC = 8.0 ug.mL-1 PMID[559036]
NPT20 Organism Candida albicans Candida albicans MIC = 64.0 ug.mL-1 PMID[559036]
NPT529 Organism Rhizoctonia solani Rhizoctonia solani MIC = 16.0 ug.mL-1 PMID[559036]
NPT2527 Organism Pythium ultimum Pythium ultimum MIC = 1.0 ug.mL-1 PMID[559036]
NPT825 Organism Phytophthora infestans Phytophthora infestans MIC = 32.0 ug.mL-1 PMID[559036]
NPT1198 Organism Magnaporthe grisea Magnaporthe grisea MIC = 4.0 ug.mL-1 PMID[559036]
NPT637 Organism Fusarium oxysporum Fusarium oxysporum MIC = 16.0 ug.mL-1 PMID[559036]
NPT2637 Organism Colletotrichum lagenarium Colletotrichum lagenarium MIC = 8.0 ug.mL-1 PMID[559036]
NPT635 Organism Botryotinia fuckeliana Botryotinia fuckeliana MIC = 8.0 ug.mL-1 PMID[559036]
NPT2638 Organism Alternaria kikuchiana Alternaria kikuchiana MIC = 8.0 ug.mL-1 PMID[559036]
NPT6 Organism Plasmodium falciparum Plasmodium falciparum IC50 = 13.0 nM PMID[559037]
NPT2 Others Unspecified Ratio IC50 = 12.0 n.a. PMID[559037]

☑ Note for Activity Records:
☉ The quantitative biological activities were primarily integrated from ChEMBL (Version-30) database and were also directly collected from PubMed literature. PubMed PMID was provided as the reference link for each activity record.

  Chemically structural similarity: I. Similar Active Natural Products in NPASS

Top-200 similar NPs were calculated against the active-NP-set (includes 4,3285 NPs with experimentally-derived bioactivity available in NPASS)

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules. Tc lies between [0, 1] where '1' indicates the highest similarity. What is Tanimoto coefficient

●  The left chart: Distribution of similarity level between NPC35109 and all remaining natural products in the NPASS database.
●  The right table: Most similar natural products (Tc>=0.56 or Top200).

Similarity Score Similarity Level Natural Product ID
0.9916 High Similarity NPC220757
0.9916 High Similarity NPC196921
0.9833 High Similarity NPC34963
0.9752 High Similarity NPC469673
0.9752 High Similarity NPC58029
0.975 High Similarity NPC279478
0.975 High Similarity NPC241935
0.9746 High Similarity NPC15095
0.9672 High Similarity NPC476823
0.916 High Similarity NPC17938
0.8968 High Similarity NPC469674
0.8779 High Similarity NPC25887
0.8595 High Similarity NPC239273
0.8583 High Similarity NPC231529
0.8571 High Similarity NPC470063
0.8571 High Similarity NPC470426
0.8561 High Similarity NPC476825
0.856 High Similarity NPC8374
0.8548 High Similarity NPC470265
0.8548 High Similarity NPC23786
0.8527 High Similarity NPC327664
0.8527 High Similarity NPC476097
0.8527 High Similarity NPC470427
0.8527 High Similarity NPC24599
0.8525 High Similarity NPC257457
0.8525 High Similarity NPC311554
0.8492 Intermediate Similarity NPC63186
0.848 Intermediate Similarity NPC120724
0.8468 Intermediate Similarity NPC67569
0.8462 Intermediate Similarity NPC60150
0.8462 Intermediate Similarity NPC192334
0.8455 Intermediate Similarity NPC264954
0.845 Intermediate Similarity NPC476824
0.8438 Intermediate Similarity NPC471407
0.8438 Intermediate Similarity NPC470880
0.8438 Intermediate Similarity NPC134902
0.8425 Intermediate Similarity NPC473265
0.8425 Intermediate Similarity NPC473253
0.8425 Intermediate Similarity NPC287423
0.8425 Intermediate Similarity NPC470882
0.8413 Intermediate Similarity NPC8369
0.8403 Intermediate Similarity NPC179642
0.84 Intermediate Similarity NPC153700
0.84 Intermediate Similarity NPC88326
0.84 Intermediate Similarity NPC269642
0.8387 Intermediate Similarity NPC474370
0.8372 Intermediate Similarity NPC254823
0.8361 Intermediate Similarity NPC148458
0.8359 Intermediate Similarity NPC311534
0.8359 Intermediate Similarity NPC236999
0.8346 Intermediate Similarity NPC473635
0.8333 Intermediate Similarity NPC11895
0.8333 Intermediate Similarity NPC129992
0.8333 Intermediate Similarity NPC469789
0.8308 Intermediate Similarity NPC471855
0.8293 Intermediate Similarity NPC284068
0.8293 Intermediate Similarity NPC470493
0.8293 Intermediate Similarity NPC140055
0.8293 Intermediate Similarity NPC312824
0.8293 Intermediate Similarity NPC470492
0.8293 Intermediate Similarity NPC471854
0.8293 Intermediate Similarity NPC286528
0.8293 Intermediate Similarity NPC183580
0.8293 Intermediate Similarity NPC20302
0.8293 Intermediate Similarity NPC167606
0.8281 Intermediate Similarity NPC42399
0.8268 Intermediate Similarity NPC172154
0.8268 Intermediate Similarity NPC81736
0.8268 Intermediate Similarity NPC473255
0.8264 Intermediate Similarity NPC100267
0.8264 Intermediate Similarity NPC475524
0.8264 Intermediate Similarity NPC280782
0.8254 Intermediate Similarity NPC162009
0.8254 Intermediate Similarity NPC170538
0.8254 Intermediate Similarity NPC222688
0.8254 Intermediate Similarity NPC257017
0.825 Intermediate Similarity NPC475134
0.825 Intermediate Similarity NPC475563
0.8244 Intermediate Similarity NPC88668
0.824 Intermediate Similarity NPC472004
0.8226 Intermediate Similarity NPC709
0.8226 Intermediate Similarity NPC118638
0.8226 Intermediate Similarity NPC475372
0.8226 Intermediate Similarity NPC50774
0.8211 Intermediate Similarity NPC270958
0.8203 Intermediate Similarity NPC293112
0.8197 Intermediate Similarity NPC202889
0.8189 Intermediate Similarity NPC472399
0.8189 Intermediate Similarity NPC473979
0.8182 Intermediate Similarity NPC473921
0.8182 Intermediate Similarity NPC475668
0.8182 Intermediate Similarity NPC475480
0.8182 Intermediate Similarity NPC471234
0.8175 Intermediate Similarity NPC471999
0.8175 Intermediate Similarity NPC46570
0.8175 Intermediate Similarity NPC472000
0.8175 Intermediate Similarity NPC52839
0.8168 Intermediate Similarity NPC231240
0.816 Intermediate Similarity NPC475041
0.816 Intermediate Similarity NPC312536
0.816 Intermediate Similarity NPC475520
0.816 Intermediate Similarity NPC472933
0.8154 Intermediate Similarity NPC473593
0.8154 Intermediate Similarity NPC476966
0.8145 Intermediate Similarity NPC475323
0.8145 Intermediate Similarity NPC473656
0.814 Intermediate Similarity NPC298841
0.813 Intermediate Similarity NPC147912
0.813 Intermediate Similarity NPC67259
0.813 Intermediate Similarity NPC178289
0.8125 Intermediate Similarity NPC469790
0.8125 Intermediate Similarity NPC3381
0.8125 Intermediate Similarity NPC226049
0.8115 Intermediate Similarity NPC71348
0.8115 Intermediate Similarity NPC317687
0.811 Intermediate Similarity NPC19464
0.811 Intermediate Similarity NPC107493
0.8106 Intermediate Similarity NPC316915
0.8095 Intermediate Similarity NPC157252
0.8095 Intermediate Similarity NPC109973
0.8095 Intermediate Similarity NPC471128
0.8095 Intermediate Similarity NPC476961
0.8095 Intermediate Similarity NPC145182
0.8095 Intermediate Similarity NPC471126
0.8092 Intermediate Similarity NPC173347
0.8083 Intermediate Similarity NPC472825
0.808 Intermediate Similarity NPC475401
0.808 Intermediate Similarity NPC329736
0.808 Intermediate Similarity NPC473720
0.808 Intermediate Similarity NPC186525
0.8077 Intermediate Similarity NPC473620
0.8065 Intermediate Similarity NPC49492
0.8065 Intermediate Similarity NPC469794
0.8065 Intermediate Similarity NPC196931
0.8065 Intermediate Similarity NPC266728
0.8065 Intermediate Similarity NPC470075
0.8065 Intermediate Similarity NPC72772
0.8062 Intermediate Similarity NPC222307
0.8049 Intermediate Similarity NPC250109
0.8049 Intermediate Similarity NPC962
0.8049 Intermediate Similarity NPC52634
0.8049 Intermediate Similarity NPC474937
0.8049 Intermediate Similarity NPC472926
0.8049 Intermediate Similarity NPC477126
0.8049 Intermediate Similarity NPC122056
0.8047 Intermediate Similarity NPC84865
0.8047 Intermediate Similarity NPC204812
0.8047 Intermediate Similarity NPC473802
0.8033 Intermediate Similarity NPC317107
0.8031 Intermediate Similarity NPC470921
0.8031 Intermediate Similarity NPC470878
0.8031 Intermediate Similarity NPC472001
0.8031 Intermediate Similarity NPC472401
0.8031 Intermediate Similarity NPC473256
0.8017 Intermediate Similarity NPC472216
0.8017 Intermediate Similarity NPC475065
0.8017 Intermediate Similarity NPC284828
0.8017 Intermediate Similarity NPC173905
0.8017 Intermediate Similarity NPC5475
0.8016 Intermediate Similarity NPC255081
0.8016 Intermediate Similarity NPC473203
0.8016 Intermediate Similarity NPC275696
0.8016 Intermediate Similarity NPC471108
0.8016 Intermediate Similarity NPC476960
0.8016 Intermediate Similarity NPC477092
0.8016 Intermediate Similarity NPC42673
0.8016 Intermediate Similarity NPC61520
0.8016 Intermediate Similarity NPC5989
0.8016 Intermediate Similarity NPC9674
0.8016 Intermediate Similarity NPC5991
0.8016 Intermediate Similarity NPC5292
0.8016 Intermediate Similarity NPC469380
0.8016 Intermediate Similarity NPC22628
0.8016 Intermediate Similarity NPC19028
0.8015 Intermediate Similarity NPC221414
0.8 Intermediate Similarity NPC117702
0.8 Intermediate Similarity NPC475305
0.8 Intermediate Similarity NPC243065
0.8 Intermediate Similarity NPC472927
0.8 Intermediate Similarity NPC131665
0.8 Intermediate Similarity NPC146456
0.8 Intermediate Similarity NPC255387
0.8 Intermediate Similarity NPC471357
0.8 Intermediate Similarity NPC472934
0.8 Intermediate Similarity NPC469757
0.7984 Intermediate Similarity NPC473709
0.7984 Intermediate Similarity NPC473919
0.7984 Intermediate Similarity NPC474872
0.7984 Intermediate Similarity NPC470494
0.7984 Intermediate Similarity NPC241456
0.7984 Intermediate Similarity NPC470922
0.7984 Intermediate Similarity NPC24651
0.7984 Intermediate Similarity NPC32868
0.7984 Intermediate Similarity NPC145238
0.7967 Intermediate Similarity NPC89227
0.7967 Intermediate Similarity NPC265499
0.7967 Intermediate Similarity NPC221144
0.7967 Intermediate Similarity NPC269530
0.7967 Intermediate Similarity NPC101825
0.7967 Intermediate Similarity NPC475391

  Chemically structural similarity: II. Similar Clinical/Approved Drugs

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules.

●  The left chart: Distribution of similarity level between NPC35109 and all drugs/candidates.
●  The right table: Most similar clinical/approved drugs (Tc>=0.56 or Top200).

Similarity Score Similarity Level Drug ID Developmental Stage
0.8293 Intermediate Similarity NPD7115 Discovery
0.8095 Intermediate Similarity NPD6319 Approved
0.7967 Intermediate Similarity NPD8297 Approved
0.7879 Intermediate Similarity NPD7319 Approved
0.7863 Intermediate Similarity NPD7078 Approved
0.7846 Intermediate Similarity NPD7492 Approved
0.7812 Intermediate Similarity NPD6054 Approved
0.7803 Intermediate Similarity NPD7736 Approved
0.7786 Intermediate Similarity NPD6616 Approved
0.7786 Intermediate Similarity NPD7507 Approved
0.776 Intermediate Similarity NPD4632 Approved
0.7742 Intermediate Similarity NPD6649 Approved
0.7742 Intermediate Similarity NPD6650 Approved
0.7727 Intermediate Similarity NPD8293 Discontinued
0.7724 Intermediate Similarity NPD6372 Approved
0.7724 Intermediate Similarity NPD6373 Approved
0.7705 Intermediate Similarity NPD7899 Clinical (unspecified phase)
0.7692 Intermediate Similarity NPD6370 Approved
0.7674 Intermediate Similarity NPD6059 Approved
0.7661 Intermediate Similarity NPD6371 Approved
0.7642 Intermediate Similarity NPD7320 Approved
0.7642 Intermediate Similarity NPD6899 Approved
0.7642 Intermediate Similarity NPD6881 Approved
0.7634 Intermediate Similarity NPD7604 Phase 2
0.7623 Intermediate Similarity NPD5739 Approved
0.7623 Intermediate Similarity NPD6675 Approved
0.7623 Intermediate Similarity NPD7128 Approved
0.7623 Intermediate Similarity NPD6402 Approved
0.7615 Intermediate Similarity NPD8033 Approved
0.7615 Intermediate Similarity NPD6016 Approved
0.7615 Intermediate Similarity NPD6015 Approved
0.76 Intermediate Similarity NPD8130 Phase 1
0.7581 Intermediate Similarity NPD4061 Clinical (unspecified phase)
0.7563 Intermediate Similarity NPD7638 Approved
0.7561 Intermediate Similarity NPD5697 Approved
0.7557 Intermediate Similarity NPD5988 Approved
0.754 Intermediate Similarity NPD6882 Approved
0.7538 Intermediate Similarity NPD8377 Approved
0.7538 Intermediate Similarity NPD8294 Approved
0.752 Intermediate Similarity NPD5955 Clinical (unspecified phase)
0.752 Intermediate Similarity NPD6883 Approved
0.752 Intermediate Similarity NPD7102 Approved
0.752 Intermediate Similarity NPD7290 Approved
0.752 Intermediate Similarity NPD4634 Approved
0.7519 Intermediate Similarity NPD7327 Approved
0.7519 Intermediate Similarity NPD7328 Approved
0.75 Intermediate Similarity NPD7640 Approved
0.75 Intermediate Similarity NPD7639 Approved
0.7481 Intermediate Similarity NPD8380 Approved
0.7481 Intermediate Similarity NPD8296 Approved
0.7481 Intermediate Similarity NPD8378 Approved
0.7481 Intermediate Similarity NPD8379 Approved
0.7481 Intermediate Similarity NPD8335 Approved
0.748 Intermediate Similarity NPD6008 Approved
0.7479 Intermediate Similarity NPD6084 Phase 2
0.7479 Intermediate Similarity NPD6083 Phase 2
0.7462 Intermediate Similarity NPD7516 Approved
0.746 Intermediate Similarity NPD6847 Approved
0.746 Intermediate Similarity NPD6869 Approved
0.746 Intermediate Similarity NPD6617 Approved
0.7442 Intermediate Similarity NPD6009 Approved
0.744 Intermediate Similarity NPD6013 Approved
0.744 Intermediate Similarity NPD6012 Approved
0.744 Intermediate Similarity NPD6014 Approved
0.7419 Intermediate Similarity NPD5701 Approved
0.7417 Intermediate Similarity NPD4225 Approved
0.736 Intermediate Similarity NPD6011 Approved
0.736 Intermediate Similarity NPD6686 Approved
0.7348 Intermediate Similarity NPD5983 Phase 2
0.7311 Intermediate Similarity NPD6356 Clinical (unspecified phase)
0.728 Intermediate Similarity NPD5954 Clinical (unspecified phase)
0.7273 Intermediate Similarity NPD5696 Approved
0.7259 Intermediate Similarity NPD6336 Discontinued
0.7239 Intermediate Similarity NPD8328 Phase 3
0.7236 Intermediate Similarity NPD5211 Phase 2
0.7227 Intermediate Similarity NPD6001 Approved
0.7222 Intermediate Similarity NPD5345 Clinical (unspecified phase)
0.7218 Intermediate Similarity NPD7503 Approved
0.7213 Intermediate Similarity NPD5286 Approved
0.7213 Intermediate Similarity NPD5285 Approved
0.7213 Intermediate Similarity NPD4696 Approved
0.719 Intermediate Similarity NPD4755 Approved
0.7188 Intermediate Similarity NPD6401 Clinical (unspecified phase)
0.7167 Intermediate Similarity NPD5695 Phase 3
0.7153 Intermediate Similarity NPD6033 Approved
0.7143 Intermediate Similarity NPD6412 Phase 2
0.7132 Intermediate Similarity NPD6053 Discontinued
0.712 Intermediate Similarity NPD5141 Approved
0.7099 Intermediate Similarity NPD6274 Approved
0.7097 Intermediate Similarity NPD4633 Approved
0.7097 Intermediate Similarity NPD5226 Approved
0.7097 Intermediate Similarity NPD5224 Approved
0.7097 Intermediate Similarity NPD5225 Approved
0.7073 Intermediate Similarity NPD4700 Approved
0.7068 Intermediate Similarity NPD7100 Approved
0.7068 Intermediate Similarity NPD7101 Approved
0.7059 Intermediate Similarity NPD5693 Phase 1
0.704 Intermediate Similarity NPD5174 Approved
0.704 Intermediate Similarity NPD5175 Approved
0.7034 Intermediate Similarity NPD4753 Phase 2
0.7025 Intermediate Similarity NPD5210 Approved
0.7025 Intermediate Similarity NPD4629 Approved
0.7016 Intermediate Similarity NPD5223 Approved
0.7 Intermediate Similarity NPD6399 Phase 3
0.6992 Remote Similarity NPD6335 Approved
0.6963 Remote Similarity NPD6291 Clinical (unspecified phase)
0.696 Remote Similarity NPD7632 Discontinued
0.6953 Remote Similarity NPD4730 Approved
0.6953 Remote Similarity NPD4729 Approved
0.6947 Remote Similarity NPD8133 Approved
0.6929 Remote Similarity NPD4768 Approved
0.6929 Remote Similarity NPD4767 Approved
0.6917 Remote Similarity NPD8295 Clinical (unspecified phase)
0.6917 Remote Similarity NPD6317 Approved
0.6891 Remote Similarity NPD6080 Approved
0.6891 Remote Similarity NPD6673 Approved
0.6891 Remote Similarity NPD6904 Approved
0.6866 Remote Similarity NPD6313 Approved
0.6866 Remote Similarity NPD6314 Approved
0.686 Remote Similarity NPD4202 Approved
0.6846 Remote Similarity NPD5248 Approved
0.6846 Remote Similarity NPD5247 Approved
0.6846 Remote Similarity NPD5249 Phase 3
0.6846 Remote Similarity NPD5251 Approved
0.6846 Remote Similarity NPD5250 Approved
0.6838 Remote Similarity NPD6908 Approved
0.6838 Remote Similarity NPD6909 Approved
0.6833 Remote Similarity NPD5785 Approved
0.6829 Remote Similarity NPD4697 Phase 3
0.6829 Remote Similarity NPD5221 Approved
0.6829 Remote Similarity NPD5220 Clinical (unspecified phase)
0.6829 Remote Similarity NPD5222 Approved
0.6822 Remote Similarity NPD5128 Approved
0.6809 Remote Similarity NPD5956 Approved
0.6807 Remote Similarity NPD5737 Approved
0.6807 Remote Similarity NPD6672 Approved
0.6807 Remote Similarity NPD6903 Approved
0.6803 Remote Similarity NPD7748 Approved
0.678 Remote Similarity NPD7521 Approved
0.678 Remote Similarity NPD7146 Approved
0.678 Remote Similarity NPD6684 Approved
0.678 Remote Similarity NPD3618 Phase 1
0.678 Remote Similarity NPD7334 Approved
0.678 Remote Similarity NPD5330 Approved
0.678 Remote Similarity NPD3574 Clinical (unspecified phase)
0.678 Remote Similarity NPD6409 Approved
0.6777 Remote Similarity NPD6079 Approved
0.6774 Remote Similarity NPD5173 Approved
0.6774 Remote Similarity NPD7902 Approved
0.6772 Remote Similarity NPD4754 Approved
0.6769 Remote Similarity NPD8132 Clinical (unspecified phase)
0.6761 Remote Similarity NPD7260 Phase 2
0.675 Remote Similarity NPD5328 Approved
0.6746 Remote Similarity NPD5344 Discontinued
0.6716 Remote Similarity NPD6868 Approved
0.6715 Remote Similarity NPD6921 Approved
0.6715 Remote Similarity NPD8513 Phase 3
0.6715 Remote Similarity NPD8516 Approved
0.6715 Remote Similarity NPD8517 Approved
0.6715 Remote Similarity NPD8515 Approved
0.6712 Remote Similarity NPD6334 Approved
0.6712 Remote Similarity NPD6333 Approved
0.6695 Remote Similarity NPD5329 Approved
0.6694 Remote Similarity NPD46 Approved
0.6694 Remote Similarity NPD6698 Approved
0.6691 Remote Similarity NPD4522 Approved
0.6667 Remote Similarity NPD5215 Approved
0.6667 Remote Similarity NPD5216 Approved
0.6667 Remote Similarity NPD7513 Clinical (unspecified phase)
0.6667 Remote Similarity NPD5217 Approved
0.6639 Remote Similarity NPD7515 Phase 2
0.6639 Remote Similarity NPD6098 Approved
0.6639 Remote Similarity NPD6050 Approved
0.6619 Remote Similarity NPD6067 Discontinued
0.661 Remote Similarity NPD3133 Approved
0.661 Remote Similarity NPD4197 Approved
0.661 Remote Similarity NPD3665 Phase 1
0.661 Remote Similarity NPD3666 Approved
0.661 Remote Similarity NPD4786 Approved
0.6597 Remote Similarity NPD6845 Suspended
0.6591 Remote Similarity NPD5169 Approved
0.6591 Remote Similarity NPD5134 Clinical (unspecified phase)
0.6591 Remote Similarity NPD5135 Approved
0.6566 Remote Similarity NPD7799 Discontinued
0.6557 Remote Similarity NPD5692 Phase 3
0.6541 Remote Similarity NPD5127 Approved
0.6541 Remote Similarity NPD8413 Clinical (unspecified phase)
0.6532 Remote Similarity NPD5282 Discontinued
0.6532 Remote Similarity NPD7901 Clinical (unspecified phase)
0.6532 Remote Similarity NPD7900 Approved
0.6504 Remote Similarity NPD5694 Approved
0.6504 Remote Similarity NPD5284 Approved
0.6504 Remote Similarity NPD5281 Approved
0.6504 Remote Similarity NPD8034 Phase 2
0.6504 Remote Similarity NPD7637 Suspended
0.6504 Remote Similarity NPD8035 Phase 2
0.65 Remote Similarity NPD5690 Phase 2
0.648 Remote Similarity NPD1698 Clinical (unspecified phase)
0.6479 Remote Similarity NPD8074 Phase 3
0.6475 Remote Similarity NPD6051 Approved

  Bioactivity similarity: Similar Natural Products in NPASS

Bioactivity similarity was calculated based on bioactivity descriptors of compounds. The bioactivity descriptors were calculated by a recently developed AI algorithm Chemical Checker (CC) [Nature Biotechnology, 38:1087–1096, 2020; Nature Communications, 12:3932, 2021], which evaluated bioactivity similarities at five levels:
A: chemistry similarity;
B: biological targets similarity;
C: networks similarity;
D: cell-based bioactivity similarity;
E: similarity based on clinical data.

Those 5 categories of CC bioactivity descriptors were calculated and then subjected to manifold projection using UMAP algorithm, to project all NPs on a 2-Dimensional space. The current NP was highlighted with a small circle in the 2-D map. Below figures: left-to-right, A-to-E.

A: chemistry similarity
B: biological targets similarity
C: networks similarity
D: cell-based bioactivity similarity
E: similarity based on clinical data