Natural Product: NPC327664

Natural Product IDNPC327664
Common Name
?
The InCHIKey will be temporarily assigned as the "Common Name" if no IUPAC name or alternative short name is available.
Chloramultilide C
IUPAC Name n.a.
Synonyms Chloramultilide C
Synthetic Gene Cluster n.a.
ChEMBL Identifier CHEMBL1097992
PubChem CID 24763324
Chemical Classification
  • CHEMONTID:0000000 [Organic compounds]
    • [CHEMONTID:0000012] Lipids and lipid-like molecules
      • [CHEMONTID:0000259] Prenol lipids
        • [CHEMONTID:0001553] Triterpenoids

The Chemical Classification was calculated by Classyfire, a software for chemical taxonomy calculation. Reference: DOI:10.1186/s13321-016-0174-y.

  Chemical Representations

Standard InCHIKey VAOZXVGMCZGLOH-BQPKVCGRSA-N
Standard InCHI InChI=1S/C39H42O14/c1-15-7-8-49-25(40)5-6-26(41)50-13-17-18-11-23-34(3,19-9-22(19)37(23,47)14-51-30(15)42)24-12-36(46)21-10-20(21)35(4)29(36)28(38(18,24)52-32(17)44)27-16(2)31(43)53-39(27,48)33(35)45/h7,19-24,33,45-48H,5-6,8-14H2,1-4H3/b15-7+/t19-,20-,21+,22+,23-,24+,33-,34+,35+,36+,37+,38+,39+/m1/s1
SMILES C/C/1=CCOC(=O)CCC(=O)OCC2=C3C[C@@H]4[C@](C)([C@@H]5C[C@@H]5[C@]4(COC1=O)O)[C@@H]1C[C@@]4([C@H]5C[C@H]5[C@@]5(C)C4=C(C4=C(C)C(=O)O[C@@]4([C@@H]5O)O)[C@]31OC2=O)O

  Calculated Properties

Physi-Chem Properties

MedChem Properties

ADMET Properties (ADMETlab3.0)

ADMET: Absorption

ADMET: Distribution

ADMET: Metabolism

ADMET: Excretion

ADMET: Toxicity

  Species Source

Organism ID Organism Name Taxonomy Level Family SuperKingdom Isolation Part Collection Location Collection Time Reference
NPO6915 Chloranthus japonicus Species Chloranthaceae Eukaryota n.a. whole plant n.a. DOI[10.1016/j.phytol.2016.01.005]
NPO14995 Chloranthus spicatus Species Chloranthaceae Eukaryota whole plant n.a. n.a. PMID[18044839]
NPO6915 Chloranthus japonicus Species Chloranthaceae Eukaryota n.a. whole plant n.a. PMID[18451544]
NPO6915 Chloranthus japonicus Species Chloranthaceae Eukaryota Whole plant Suiling district, Heilongjiang Province, China 2008-AUG PMID[21142110]
NPO6915 Chloranthus japonicus Species Chloranthaceae Eukaryota whole plants Suiling district, Heilongjiang Province, China 2008-AUG PMID[21142110]
NPO6915 Chloranthus japonicus Species Chloranthaceae Eukaryota n.a. whole plant n.a. PMID[21142110]
NPO6915 Chloranthus japonicus Species Chloranthaceae Eukaryota n.a. whole plant n.a. PMID[21650224]
NPO6915 Chloranthus japonicus Species Chloranthaceae Eukaryota n.a. n.a. n.a. PMID[21650224]
NPO15190 Chloranthus fortunei Species Chloranthaceae Eukaryota n.a. n.a. n.a. PMID[27997206]
NPO14995 Chloranthus spicatus Species Chloranthaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO6915 Chloranthus japonicus Species Chloranthaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO15190 Chloranthus fortunei Species Chloranthaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO6915 Chloranthus japonicus Species Chloranthaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO14995 Chloranthus spicatus Species Chloranthaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO6915 Chloranthus japonicus Species Chloranthaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO14995 Chloranthus spicatus Species Chloranthaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO6915 Chloranthus japonicus Species Chloranthaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO14995 Chloranthus spicatus Species Chloranthaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO15190 Chloranthus fortunei Species Chloranthaceae Eukaryota n.a. n.a. n.a. Database[UNPD]

Note for Reference:
In addition to directly collecting NP source organism data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated them from below databases:
UNPD: Universal Natural Products Database [PMID: 23638153].
StreptomeDB: a database of streptomycetes natural products [PMID: 33051671].
TM-MC: a database of medicinal materials and chemical compounds in Northeast Asian traditional medicine [PMID: 26156871].
TCM@Taiwan: a Traditional Chinese Medicine database [PMID: 21253603].
TCMID: a Traditional Chinese Medicine database [PMID: 29106634].
TCMSP: The traditional Chinese medicine systems pharmacology database and analysis platform [PMID: 24735618].
HerDing: a herb recommendation system to treat diseases using genes and chemicals [PMID: 26980517].
MetaboLights: a metabolomics database [PMID: 27010336].
FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].



  NP Quantity Composition/Concentration

Organism ID Organism Name Organism Material Preparation Organism Part NP Quantity (Standard) NP Quantity (Minimum) NP Quantity (Maximum) Quantity Unit Reference

Note for Reference:
In addition to directly collecting NP quantitative data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated NP quantitative records for specific NP domains (e.g., NPS from foods or herbs) from domain-specific databases. These databases include:
DUKE: Dr. Duke's Phytochemical and Ethnobotanical Databases.
PHENOL EXPLORER: is the first comprehensive database on polyphenol content in foods [PMID: 24103452], its homepage can be accessed at here.
FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].



 Biological Activity

Molecular-level activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference

In vitro activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference
NPT81 Cell line A549 Homo sapiens IC50 > 10000.0 nM PMID[20392109]
NPT116 Cell line HL-60 Homo sapiens IC50 > 10000.0 nM PMID[20392109]
NPT461 Cell line PANC-1 Homo sapiens IC50 > 10000.0 nM PMID[20392109]
NPT659 Cell line SMMC-7721 Homo sapiens IC50 > 10000.0 nM PMID[20392109]
NPT134 Cell line SK-BR-3 Homo sapiens IC50 > 10000.0 nM PMID[20392109]
NPT188 Organism Candida parapsilosis Candida parapsilosis MIC > 157.0 nM PMID[18044839]
NPT6 Organism Plasmodium falciparum Plasmodium falciparum IC50 > 25000.0 nM PMID[27997206]
NPT20 Organism Candida albicans Candida albicans MIC > 157.0 nM PMID[18044839]

In vivo activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference





 Experimental ADME

Experiment Model Experiment Tissue ADME Type ADME Relation ADME Value ADME Unit Reference





 Experimental Toxicity

Quantitative toxicity

Experiment Model Experiment Organism Toxicity Type Toxicity Relation Toxicity Value Toxicity Unit Reference

Common Abbreviations:
LC: Lethal Concentration; LD: Lethal Dose; LT:Lethal Time; NOAEL: No-observed-adverse-effect Level; BMDL: Benchmark Dose Lower Confidence Limit; BMD: Benchmark Dose; BMC:Benchmark Concentration; LOAEL: Lowest Observed Adverse Effect Level; RfD:Reference Dose; RfC:Reference Concentration; MRL: Minimal Risk Level; MEG: Maximum Exposure Guideline; PAC: Protective Action Criteria

Categorical toxicity labels

Hepatotoxicity Carcinogenicity Mutagenicity Cardiotoxicity Respiratory Toxicity Eye Irritation Endocrine Disruption
Hepatotoxicity Carcinogenicity Mutagenicity Cardiotoxicity Respiratory Toxicity Eye Irritation Endocrine Disruption

Note for Reference:
In addition to directly collecting NP quantitative data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated NP toxicity records from domain-specific databases. These databases include:
ToxValDB: a curated database that compiles quantitative toxicity values for chemicals from diverse public sources to support toxicological research and risk assessment.
TOXRIC: a comprehensive, free-to-access, online database providing toxicological/feature data. The toxicity labels are retrieved from this database. [PMID: 36400569]


  Chemically structural similarity

Similar Active Natural Products in NPASS

Top-200 similar NPs were calculated against the active-NP-set (includes approximately 50,000 NPs with experimentally-derived bioactivity available in NPASS)

Similarity is measured using the Tanimoto coefficient (Tc) , which compares the binary fingerprints of two molecules. Tc is calculated as the intersection divided by the union of '1' bits in the fingerprints, ranging from 0 to 1, with 1 indicating highest similarity.

●  The left chart: Distribution of similarity level between NPC327664 and all remaining natural products in the NPASS database.
●  The right table: Most similar natural products (Tc>=0.5 or Top200).

Similarity Score Similarity Level Natural Product ID
1.0 High Similarity NPC476097
0.8427 Intermediate Similarity NPC242451
0.8172 Intermediate Similarity NPC279992
0.8172 Intermediate Similarity NPC476824
0.7708 Intermediate Similarity NPC481183
0.7526 Intermediate Similarity NPC213697
0.7423 Intermediate Similarity NPC192334
0.7423 Intermediate Similarity NPC60150
0.7419 Intermediate Similarity NPC134902
0.7172 Intermediate Similarity NPC470427
0.6602 Remote Similarity NPC470426
0.625 Remote Similarity NPC476825
0.6238 Remote Similarity NPC469381
0.6 Remote Similarity NPC84865
0.5804 Remote Similarity NPC486805
0.5596 Remote Similarity NPC24599
0.5586 Remote Similarity NPC486804
0.5577 Remote Similarity NPC25887
0.5545 Remote Similarity NPC226049
0.5429 Remote Similarity NPC254823
0.5225 Remote Similarity NPC34963
0.5225 Remote Similarity NPC186637

Similar Clinical/Approved Drugs

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules.

●  The left chart: Distribution of similarity level between NPC327664 and all drugs/candidates.
●  The right table: Most similar clinical/approved drugs (Tc>=0.5 or Top200).

Similarity Score Similarity Level Drug ID Developmental Stage
NPD

Bioactivity similarity

  Bioactivity similarity

Similar Natural Products in NPASS

Similarity level is defined by Bioactivity similarity was calculated based on bioactivity descriptors of compounds. The bioactivity descriptors were calculated by a recently developed AI algorithm Chemical Checker (CC) [Nature Biotechnology, 38:1087–1096, 2020; Nature Communications, 12:3932, 2021], which evaluated bioactivity similarities at five levels:
A: chemistry similarity;
B: biological targets similarity;
C: networks similarity;
D: cell-based bioactivity similarity;
E: similarity based on clinical data.
Those 5 categories of CC bioactivity descriptors were calculated and then subjected to manifold projection using UMAP algorithm, to project all NPs on a 2-Dimensional space. The current NP was highlighted with a small circle in the 2-D map. Below figures: left-to-right, A-to-E.

A: chemistry similarity
B: biological targets similarity
C: networks similarity
D: cell-based bioactivity similarity
E: similarity based on clinical data