NPASS Compound

Natural Product: NPC290693

Natural Product ID	NPC290693
Common Name ? The InCHIKey will be temporarily assigned as the "Common Name" if no IUPAC name or alternative short name is available.	BYZQVAOKDQTHHP-QFUJVLJYSA-N
IUPAC Name	n.a.
Synonyms
Synthetic Gene Cluster	n.a.
ChEMBL Identifier	CHEMBL375720
PubChem CID	441840
Chemical Classification	CHEMONTID:0000000 [Organic compounds] [CHEMONTID:0000012] Lipids and lipid-like molecules [CHEMONTID:0000258] Steroids and steroid derivatives [CHEMONTID:0001125] Steroid lactones [CHEMONTID:0001555] Cardenolides and derivatives [CHEMONTID:0001559] Cardenolide glycosides and derivatives

The Chemical Classification was calculated by Classyfire, a software for chemical taxonomy calculation. Reference: DOI:10.1186/s13321-016-0174-y.

Chemical Representations

RDKit 3D 81 87 0 0 0 0 0 0 0 0999 V2000 8.1357 -1.0348 -0.8952 C 0 0 0 0 0 0 0 0 0 0 0 0 7.1865 -0.0328 -0.8297 O 0 0 0 0 0 0 0 0 0 0 0 0 6.9318 0.3937 0.4661 C 0 0 2 0 0 0 0 0 0 0 0 0 5.4528 0.0775 0.7274 C 0 0 0 0 0 0 0 0 0 0 0 0 4.5704 0.9010 -0.2202 C 0 0 2 0 0 0 0 0 0 0 0 0 3.6463 0.0084 -0.7478 O 0 0 0 0 0 0 0 0 0 0 0 0 2.3318 0.3115 -0.3892 C 0 0 1 0 0 0 0 0 0 0 0 0 1.4560 0.6010 -1.5604 C 0 0 0 0 0 0 0 0 0 0 0 0 0.3618 -0.3775 -1.8051 C 0 0 0 0 0 0 0 0 0 0 0 0 -0.4090 -0.8116 -0.6015 C 0 0 1 0 0 0 0 0 0 0 0 0 0.3114 -0.5118 0.7010 C 0 0 1 0 0 0 0 0 0 0 0 0 1.7646 -0.7756 0.4863 C 0 0 0 0 0 0 0 0 0 0 0 0 -0.0117 0.8261 1.2677 C 0 0 0 0 0 0 0 0 0 0 0 0 -1.4216 0.7868 1.7971 C 0 0 0 0 0 0 0 0 0 0 0 0 -2.2077 -0.1622 0.8994 C 0 0 2 0 0 0 0 0 0 0 0 0 -1.7560 -0.0874 -0.5114 C 0 0 2 0 0 0 0 0 0 0 0 0 -2.7316 -0.5754 -1.5168 C 0 0 0 0 0 0 0 0 0 0 0 0 -4.1642 -0.4761 -1.1754 C 0 0 0 0 0 0 0 0 0 0 0 0 -4.5615 -0.7620 0.2341 C 0 0 1 0 0 0 0 0 0 0 0 0 -3.4469 -0.5832 1.2370 C 0 0 1 0 0 0 0 0 0 0 0 0 -2.4223 -1.4792 1.3648 O 0 0 0 0 0 0 0 0 0 0 0 0 -4.1197 -0.1977 2.5303 C 0 0 0 0 0 0 0 0 0 0 0 0 -5.5362 0.1933 2.1965 C 0 0 0 0 0 0 0 0 0 0 0 0 -5.5042 0.2963 0.6888 C 0 0 2 0 0 0 0 0 0 0 0 0 -6.8548 0.2742 0.1021 C 0 0 0 0 0 0 0 0 0 0 0 0 -7.4359 -0.5092 -0.7563 C 0 0 0 0 0 0 0 0 0 0 0 0 -8.7931 -0.0867 -0.9984 C 0 0 0 0 0 0 0 0 0 0 0 0 -9.5942 -0.6674 -1.7908 O 0 0 0 0 0 0 0 0 0 0 0 0 -9.0156 1.0259 -0.2214 O 0 0 0 0 0 0 0 0 0 0 0 0 -7.8617 1.3127 0.4922 C 0 0 0 0 0 0 0 0 0 0 0 0 -5.0990 -2.1626 0.4273 C 0 0 0 0 0 0 0 0 0 0 0 0 -0.5689 -2.3096 -0.6612 C 0 0 0 0 0 0 0 0 0 0 0 0 5.3921 1.4037 -1.2054 O 0 0 0 0 0 0 0 0 0 0 0 0 6.2165 2.4016 -0.6916 C 0 0 1 0 0 0 0 0 0 0 0 0 7.0385 1.8991 0.4756 C 0 0 2 0 0 0 0 0 0 0 0 0 8.3404 2.3463 0.3287 O 0 0 0 0 0 0 0 0 0 0 0 0 7.1021 2.8582 -1.8365 C 0 0 0 0 0 0 0 0 0 0 0 0 9.1149 -0.7652 -0.4979 H 0 0 0 0 0 0 0 0 0 0 0 0 8.2690 -1.2694 -1.9845 H 0 0 0 0 0 0 0 0 0 0 0 0 7.7113 -1.9304 -0.3918 H 0 0 0 0 0 0 0 0 0 0 0 0 7.5077 -0.1124 1.2372 H 0 0 0 0 0 0 0 0 0 0 0 0 5.3272 -1.0065 0.5626 H 0 0 0 0 0 0 0 0 0 0 0 0 5.2222 0.3006 1.7886 H 0 0 0 0 0 0 0 0 0 0 0 0 4.0625 1.6635 0.3736 H 0 0 0 0 0 0 0 0 0 0 0 0 2.3849 1.2320 0.2499 H 0 0 0 0 0 0 0 0 0 0 0 0 2.1263 0.5590 -2.4719 H 0 0 0 0 0 0 0 0 0 0 0 0 1.0820 1.6673 -1.5883 H 0 0 0 0 0 0 0 0 0 0 0 0 -0.3769 0.1199 -2.5001 H 0 0 0 0 0 0 0 0 0 0 0 0 0.7940 -1.2547 -2.3479 H 0 0 0 0 0 0 0 0 0 0 0 0 -0.0391 -1.2708 1.4625 H 0 0 0 0 0 0 0 0 0 0 0 0 2.2564 -0.7901 1.4802 H 0 0 0 0 0 0 0 0 0 0 0 0 1.8708 -1.7266 -0.0596 H 0 0 0 0 0 0 0 0 0 0 0 0 0.6505 0.9526 2.1672 H 0 0 0 0 0 0 0 0 0 0 0 0 0.1767 1.6827 0.6280 H 0 0 0 0 0 0 0 0 0 0 0 0 -1.8951 1.7938 1.7855 H 0 0 0 0 0 0 0 0 0 0 0 0 -1.4406 0.4474 2.8569 H 0 0 0 0 0 0 0 0 0 0 0 0 -1.4993 0.9943 -0.7216 H 0 0 0 0 0 0 0 0 0 0 0 0 -2.5681 0.0348 -2.4569 H 0 0 0 0 0 0 0 0 0 0 0 0 -2.5185 -1.6296 -1.8630 H 0 0 0 0 0 0 0 0 0 0 0 0 -4.7119 -1.2035 -1.8455 H 0 0 0 0 0 0 0 0 0 0 0 0 -4.5575 0.5256 -1.5218 H 0 0 0 0 0 0 0 0 0 0 0 0 -4.0739 -1.0511 3.2593 H 0 0 0 0 0 0 0 0 0 0 0 0 -3.5279 0.6224 2.9763 H 0 0 0 0 0 0 0 0 0 0 0 0 -5.7021 1.2032 2.6646 H 0 0 0 0 0 0 0 0 0 0 0 0 -6.2892 -0.5204 2.5672 H 0 0 0 0 0 0 0 0 0 0 0 0 -5.0524 1.2806 0.4489 H 0 0 0 0 0 0 0 0 0 0 0 0 -6.9764 -1.3576 -1.2213 H 0 0 0 0 0 0 0 0 0 0 0 0 -8.0091 1.3019 1.6041 H 0 0 0 0 0 0 0 0 0 0 0 0 -7.4095 2.2868 0.2134 H 0 0 0 0 0 0 0 0 0 0 0 0 -6.1226 -2.1264 0.8837 H 0 0 0 0 0 0 0 0 0 0 0 0 -5.0996 -2.7483 -0.5314 H 0 0 0 0 0 0 0 0 0 0 0 0 -4.4848 -2.7662 1.1303 H 0 0 0 0 0 0 0 0 0 0 0 0 -1.5556 -2.6930 -0.4212 H 0 0 0 0 0 0 0 0 0 0 0 0 -0.3016 -2.7089 -1.6789 H 0 0 0 0 0 0 0 0 0 0 0 0 0.1516 -2.8321 0.0329 H 0 0 0 0 0 0 0 0 0 0 0 0 5.5708 3.2605 -0.4214 H 0 0 0 0 0 0 0 0 0 0 0 0 6.5735 2.3069 1.3962 H 0 0 0 0 0 0 0 0 0 0 0 0 8.6077 2.8034 1.1567 H 0 0 0 0 0 0 0 0 0 0 0 0 8.1197 2.4467 -1.6979 H 0 0 0 0 0 0 0 0 0 0 0 0 7.1877 3.9619 -1.8935 H 0 0 0 0 0 0 0 0 0 0 0 0 6.7215 2.5102 -2.8173 H 0 0 0 0 0 0 0 0 0 0 0 0 1 2 1 0 2 3 1 0 3 4 1 0 4 5 1 0 5 6 1 0 6 7 1 0 7 8 1 0 8 9 1 0 9 10 1 0 10 11 1 0 11 12 1 0 11 13 1 0 13 14 1 0 14 15 1 0 15 16 1 0 16 17 1 0 17 18 1 0 18 19 1 0 19 20 1 0 20 21 1 1 20 22 1 0 22 23 1 0 23 24 1 0 24 25 1 0 25 26 2 0 26 27 1 0 27 28 2 0 27 29 1 0 29 30 1 0 19 31 1 6 10 32 1 6 5 33 1 0 33 34 1 0 34 35 1 0 35 36 1 0 34 37 1 0 35 3 1 0 12 7 1 0 15 21 1 1 30 25 1 0 16 10 1 0 24 19 1 0 20 15 1 0 1 38 1 0 1 39 1 0 1 40 1 0 3 41 1 1 4 42 1 0 4 43 1 0 5 44 1 1 7 45 1 1 8 46 1 0 8 47 1 0 9 48 1 0 9 49 1 0 11 50 1 1 12 51 1 0 12 52 1 0 13 53 1 0 13 54 1 0 14 55 1 0 14 56 1 0 16 57 1 6 17 58 1 0 17 59 1 0 18 60 1 0 18 61 1 0 22 62 1 0 22 63 1 0 23 64 1 0 23 65 1 0 24 66 1 1 26 67 1 0 30 68 1 0 30 69 1 0 31 70 1 0 31 71 1 0 31 72 1 0 32 73 1 0 32 74 1 0 32 75 1 0 34 76 1 1 35 77 1 1 36 78 1 0 37 79 1 0 37 80 1 0 37 81 1 0 M END

Standard InCHIKey	BYZQVAOKDQTHHP-QFUJVLJYSA-N
Standard InCHI	InChI=1S/C30H44O7/c1-17-26(32)22(33-4)15-25(35-17)36-20-6-9-27(2)19(14-20)5-11-29-23(27)8-10-28(3)21(7-12-30(28,29)37-29)18-13-24(31)34-16-18/h13,17,19-23,25-26,32H,5-12,14-16H2,1-4H3/t17-,19-,20+,21-,22-,23-,25+,26+,27+,28-,29+,30-/m1/s1
SMILES	CO[C@@H]1C[C@H](O[C@H]2CC[C@]3([C@@H](C2)CC[C@@]24[C@@H]3CC[C@]3([C@]4(O2)CC[C@@H]3C2=CC(=O)OC2)C)C)O[C@@H]([C@@H]1O)C

Calculated Properties

Physi-Chem Properties

Molecular Weight:	516.31	Volume:	523.799 ? Van der Waals volume.
Dense:	0.986	LogP:	3.001 ? The logarithm of the n-octanol/water distribution coefficients.
logD7.4:	3.08 ? The logarithm of the n-octanol/water distribution coefficient at pH=7.4.	LogS:	-4.625 ? The logarithm of aqueous solubility value.
Rotatable Bonds:	4.0	Rigid Bonds:	34.0
TPSA:	86.75 ? Topological Polar Surface Area.	H-Bond Acceptor:	7.0
H-Bond Donor:	1.0	Rings:	7.0
Heavy Atoms:	7.0

MedChem Properties

QED Drug-Likeness Score:	0.339	GASA:	1.0 ? GASA represents the probability of being difficult to synthesize, ranging from 0 to 1.
Synthetic Accessibility Score:	6.068	Fsp³:	0.9
MCE-18:	163.702 ? MCE-18 stands for medicinal chemistry evolution.MCE-18≥45 is considered a suitable value.	Lipinski Rule-of-5:	Rejected
Pfizer Rule:	Rejected	GSK Rule:	Accepted
Golden Triangle Rule:	Accepted	BMS Rule:	0
Chelating Alert:	0	PAINS Alert:	0
Colloidal aggregators:	0.917	Fluc inhibitor:	0.006 ? The fluc inhibitor value is the probability of being fLuc inhibitors, within the range of 0 to 1.
Blue fluorescence:	0.011 ? The blue fluorescence value is the probability of being blue fluorescence, within the range of 0 to 1	Green fluorescence:	0.002 ? The green fluorescence value is the probability of being green fluorescence, within the range of 0 to 1
Reactive compounds:	0.123	Promiscuous compounds:	0.174

ADMET Properties (ADMETlab3.0)

ADMET: Absorption

Caco-2 Permeability:	-5.365	MDCK Permeability:	-5.162
Pgp-inhibitor:	0.925	Pgp-substrate:	0.007
PAMPA:	0.898 ? The experimental data for Peff was logarithmically transformed (logPeff). Molecules with log Peff values below 2.0 were classified as low-permeability (Category 0), while those with log Peff values exceeding 2.5 were classified as high-permeability (Category 1).	Human Intestinal Absorption (HIA):	0.002
20% Bioavailability (F20%):	0.033	30% Bioavailability (F30%):	0.025
50% Bioavailability (F50%):	0.498

ADMET: Distribution

Blood-Brain-Barrier Penetration (BBB):	0.018	MRP1:	0.501
Plasma Protein Binding (PPB):	56.787%	Volume Distribution (VD):	0.042
Fu:	48.967% ? The fraction unbound in plasms.	OATP1B1 inhibitor:	0.999
OATP1B3 inhibitor:	0.925	BCRP inhibitor:	0.156
BSEP inhibitor:	0.996

ADMET: Metabolism

CYP1A2-inhibitor:	0.998	CYP1A2-substrate:	0.0
CYP2C19-inhibitor:	0.832	CYP2C19-substrate:	0.005
CYP2C9-inhibitor:	0.0	CYP2C9-substrate:	0.0
CYP2D6-inhibitor:	0.0	CYP2D6-substrate:	0.0
CYP3A4-inhibitor:	0.978	CYP3A4-substrate:	1.0
CYP2B6-substrate:	0.0	CYP2C8-inhibitor:	0.811
HLM stability:	0.226 ? Human liver microsomal (HLM) stability. Category 0: stable+ (HLM > 30 min); Category 1: unstable- (HLM ≤ 30 min). The output value is the probability of human liver microsomal instability, where a value closer to 1 indicates a higher likelihood of instability.

ADMET: Excretion

Clearance (CL):

8.268

Half-life (T1/2):

1.695

ADMET: Toxicity

hERG Blockers:	0.191	hERG Blockers (10um):	0.585
Human Hepatotoxicity (H-HT):	0.649	Drug-induced Liver Injury (DILI):	0.987
AMES Toxicity:	0.992	Rat Oral Acute Toxicity:	0.962
Maximum Recommended Daily Dose:	0.986	Skin Sensitization:	1.0
Carcinogencity:	0.965	Eye Corrosion:	0.0
Eye Irritation:	0.007	Respiratory Toxicity:	0.925
Drug-induced Neurotoxicity:	0.368	Ototoxicity:	0.704
Hematotoxicity:	0.921	Drug-induced Nephrotoxicity:	0.934
Genotoxicity:	0.994	RPMI-8226 Immunitoxicity:	0.497
A549 Cytotoxicity:	0.968	Hek293 Cytotoxicity:	0.921
BCF:	1.937 ? Bioconcentration factors are used for considering secondary poisoning potential and assessing risks to human health via the food chain. The unit is -log10[(mg/L)/(1000*MW)].	IGC50:	4.484 ? 48 hour Tetrahymena pyriformis IGC50. The unit of IGC50 is -log10[(mg/L)/(1000*MW)].
LC50DM:	5.881 ? 48 hour Daphnia magna LC50. The unit of LC50DM is -log10[(mg/L)/(1000*MW)].	LC50FM:	5.426 ? 96 hour fathead minnow LC50. The unit of LC50FM is -log10[(mg/L)/(1000*MW)].

Species Source

Organism ID	Organism Name	Taxonomy Level	Family	SuperKingdom	Isolation Part	Collection Location	Collection Time	Reference
NPO13325	Plantago lanceolata	Species	Plantaginaceae	Eukaryota	n.a.	n.a.	n.a.	DOI[10.1038/ncomms4886]
NPO26266	Isodon japonicus	Species	Lamiaceae	Eukaryota	n.a.	n.a.	n.a.	DOI[10.1039/C39730000707]
NPO1071	Parerythropodium fulvum	Species	n.a.	n.a.	n.a.	n.a.	n.a.	PMID[11277760]
NPO10021	Nerium oleander	Species	Apocynaceae	Eukaryota	leaves	Niigata City, Niigata Province, Japan	2000-Nov	PMID[15730243]
NPO10021	Nerium oleander	Species	Apocynaceae	Eukaryota	leaves	n.a.	n.a.	PMID[16933868]
NPO10021	Nerium oleander	Species	Apocynaceae	Eukaryota	n.a.	n.a.	n.a.	PMID[17253842]
NPO10021	Nerium oleander	Species	Apocynaceae	Eukaryota	stems and twigs	Niigata City, Niigata Province, Japan	2001-NOV	PMID[17595134]
NPO10021	Nerium oleander	Species	Apocynaceae	Eukaryota	stems and twigs	n.a.	n.a.	PMID[17595134]
NPO26266	Isodon japonicus	Species	Lamiaceae	Eukaryota	n.a.	n.a.	n.a.	PMID[18491868]
NPO3936	Malva sylvestris	Species	Malvaceae	Eukaryota	n.a.	n.a.	n.a.	PMID[19731587]
NPO10021	Nerium oleander	Species	Apocynaceae	Eukaryota	n.a.	n.a.	n.a.	PMID[29693393]
NPO3936	Malva sylvestris	Species	Malvaceae	Eukaryota	n.a.	n.a.	n.a.	PMID[37726667]
NPO3936	Malva sylvestris	Species	Malvaceae	Eukaryota	n.a.	n.a.	n.a.	PMID[39382805]
NPO10021	Nerium oleander	Species	Apocynaceae	Eukaryota	Leaves; Stems	n.a.	n.a.	PMID[9214727]
NPO2342	Cytisus scoparius	Species	Fabaceae	Eukaryota	n.a.	n.a.	n.a.	Database[COCONUT]
NPO2518	Crinum kirkii	Species	Amaryllidaceae	Eukaryota	n.a.	n.a.	n.a.	Database[COCONUT]
NPO10021	Nerium oleander	Species	Apocynaceae	Eukaryota	n.a.	n.a.	n.a.	Database[COCONUT]
NPO24652	Toxicodendron succedaneum	Species	Anacardiaceae	Eukaryota	n.a.	n.a.	n.a.	Database[COCONUT]
NPO2361	Aconitum brevicalcaratum	Species	Ranunculaceae	Eukaryota	n.a.	n.a.	n.a.	Database[COCONUT]
NPO3146	Ammodendron conollyi	Species	Fabaceae	Eukaryota	n.a.	n.a.	n.a.	Database[COCONUT]
NPO351	Cirsium dipsacolepis	Species	Asteraceae	Eukaryota	n.a.	n.a.	n.a.	Database[COCONUT]
NPO6377	Cocculus diversifolius	Species	Menispermaceae	Eukaryota	n.a.	n.a.	n.a.	Database[COCONUT]
NPO1607	Croton rhamnifolius	Species	Euphorbiaceae	Eukaryota	n.a.	n.a.	n.a.	Database[COCONUT]
NPO5980	Eria subsessilis	Species	Orchidaceae	Eukaryota	n.a.	n.a.	n.a.	Database[COCONUT]
NPO5591	Fucus spiralis	Species	Fucaceae	Eukaryota	n.a.	n.a.	n.a.	Database[COCONUT]
NPO2747	Hypericum triquetrifolium	Species	Hypericaceae	Eukaryota	n.a.	n.a.	n.a.	Database[COCONUT]
NPO26266	Isodon japonicus	Species	Lamiaceae	Eukaryota	n.a.	n.a.	n.a.	Database[COCONUT]
NPO8472	Knightia deplanchei	Species	Proteaceae	Eukaryota	n.a.	n.a.	n.a.	Database[COCONUT]
NPO3936	Malva sylvestris	Species	Malvaceae	Eukaryota	n.a.	n.a.	n.a.	Database[COCONUT]
NPO3664	Mesembryanthemum anatomicum	Species	Aizoaceae	Eukaryota	n.a.	n.a.	n.a.	Database[COCONUT]
NPO6520	Myrica multiflora	Species	Myricaceae	Eukaryota	n.a.	n.a.	n.a.	Database[COCONUT]
NPO4082	Ophiarthrum elegans	Species	Ophiocomidae	Eukaryota	n.a.	n.a.	n.a.	Database[COCONUT]
NPO1071	Parerythropodium fulvum	Species	n.a.	n.a.	n.a.	n.a.	n.a.	Database[COCONUT]
NPO13325	Plantago lanceolata	Species	Plantaginaceae	Eukaryota	n.a.	n.a.	n.a.	Database[COCONUT]
NPO8840	Ptilidium ciliare	Species	Ptilidiaceae	Eukaryota	n.a.	n.a.	n.a.	Database[COCONUT]
NPO7097	Rhynchosporium orthosporum	Species	n.a.	Eukaryota	n.a.	n.a.	n.a.	Database[COCONUT]
NPO20132	Scutellaria seleriana	Species	Lamiaceae	Eukaryota	n.a.	n.a.	n.a.	Database[COCONUT]
NPO6974	Solanum racemigerum	Species	Solanaceae	Eukaryota	n.a.	n.a.	n.a.	Database[COCONUT]
NPO5197	Streptomyces eurythermus	Species	Streptomycetaceae	Bacteria	n.a.	n.a.	n.a.	Database[COCONUT]
NPO715	Teucrium pestalozzae	Species	Lamiaceae	Eukaryota	n.a.	n.a.	n.a.	Database[COCONUT]
NPO6776	Trifolium apertum	Species	Fabaceae	Eukaryota	n.a.	n.a.	n.a.	Database[COCONUT]
NPO15583	Tripodanthus acutifolius	Species	Loranthaceae	Eukaryota	n.a.	n.a.	n.a.	Database[COCONUT]
NPO1308	Veronica pectinata	Species	Plantaginaceae	Eukaryota	n.a.	n.a.	n.a.	Database[COCONUT]
NPO8585	Verpa digitaliformis	Species	Morchellaceae	Eukaryota	n.a.	n.a.	n.a.	Database[COCONUT]
NPO4253	Viguiera annua	Species	Asteraceae	Eukaryota	n.a.	n.a.	n.a.	Database[COCONUT]
NPO12987	Rhododendron farrerae	Species	Ericaceae	Eukaryota	n.a.	n.a.	n.a.	Database[COCONUT]
NPO6520	Myrica multiflora	Species	Myricaceae	Eukaryota	n.a.	n.a.	n.a.	Database[HerDing]
NPO14048	Cryptotaenia japonica	Species	Apiaceae	Eukaryota	n.a.	n.a.	n.a.	Database[HerDing]
NPO2342	Cytisus scoparius	Species	Fabaceae	Eukaryota	n.a.	n.a.	n.a.	Database[HerDing]
NPO13325	Plantago lanceolata	Species	Plantaginaceae	Eukaryota	n.a.	n.a.	n.a.	Database[HerDing]
NPO24652	Toxicodendron succedaneum	Species	Anacardiaceae	Eukaryota	n.a.	n.a.	n.a.	Database[HerDing]
NPO2747	Hypericum triquetrifolium	Species	Hypericaceae	Eukaryota	n.a.	n.a.	n.a.	Database[HerDing]
NPO10021	Nerium oleander	Species	Apocynaceae	Eukaryota	n.a.	n.a.	n.a.	Database[HerDing]
NPO3664	Mesembryanthemum anatomicum	Species	Aizoaceae	Eukaryota	n.a.	n.a.	n.a.	Database[HerDing]
NPO3936	Malva sylvestris	Species	Malvaceae	Eukaryota	n.a.	n.a.	n.a.	Database[HerDing]
NPO14048	Cryptotaenia japonica	Species	Apiaceae	Eukaryota	n.a.	n.a.	n.a.	Database[TCMID]
NPO2342	Cytisus scoparius	Species	Fabaceae	Eukaryota	n.a.	n.a.	n.a.	Database[TCMID]
NPO10021	Nerium oleander	Species	Apocynaceae	Eukaryota	n.a.	n.a.	n.a.	Database[TCMID]
NPO13325	Plantago lanceolata	Species	Plantaginaceae	Eukaryota	n.a.	n.a.	n.a.	Database[TCMID]
NPO3936	Malva sylvestris	Species	Malvaceae	Eukaryota	n.a.	n.a.	n.a.	Database[TCMID]
NPO24652	Toxicodendron succedaneum	Species	Anacardiaceae	Eukaryota	n.a.	n.a.	n.a.	Database[TCMID]
NPO2518	Crinum kirkii	Species	Amaryllidaceae	Eukaryota	n.a.	n.a.	n.a.	Database[TCMID]
NPO6520	Myrica multiflora	Species	Myricaceae	Eukaryota	n.a.	n.a.	n.a.	Database[TCMID]
NPO3664	Mesembryanthemum anatomicum	Species	Aizoaceae	Eukaryota	n.a.	n.a.	n.a.	Database[TCMID]
NPO2747	Hypericum triquetrifolium	Species	Hypericaceae	Eukaryota	n.a.	n.a.	n.a.	Database[TCMID]
NPO2342	Cytisus scoparius	Species	Fabaceae	Eukaryota	n.a.	n.a.	n.a.	Database[TCM_Taiwan]
NPO14048	Cryptotaenia japonica	Species	Apiaceae	Eukaryota	n.a.	n.a.	n.a.	Database[TCM_Taiwan]
NPO24652	Toxicodendron succedaneum	Species	Anacardiaceae	Eukaryota	n.a.	n.a.	n.a.	Database[TCM_Taiwan]
NPO15583	Tripodanthus acutifolius	Species	Loranthaceae	Eukaryota	n.a.	n.a.	n.a.	Database[UNPD]
NPO1071	Parerythropodium fulvum	Species	n.a.	n.a.	n.a.	n.a.	n.a.	Database[UNPD]
NPO351	Cirsium dipsacolepis	Species	Asteraceae	Eukaryota	n.a.	n.a.	n.a.	Database[UNPD]
NPO5197	Streptomyces eurythermus	Species	Streptomycetaceae	Bacteria	n.a.	n.a.	n.a.	Database[UNPD]
NPO6776	Trifolium apertum	Species	Fabaceae	Eukaryota	n.a.	n.a.	n.a.	Database[UNPD]
NPO2361	Aconitum brevicalcaratum	Species	Ranunculaceae	Eukaryota	n.a.	n.a.	n.a.	Database[UNPD]
NPO14048	Cryptotaenia japonica	Species	Apiaceae	Eukaryota	n.a.	n.a.	n.a.	Database[UNPD]
NPO4082	Ophiarthrum elegans	Species	Ophiocomidae	Eukaryota	n.a.	n.a.	n.a.	Database[UNPD]
NPO2342	Cytisus scoparius	Species	Fabaceae	Eukaryota	n.a.	n.a.	n.a.	Database[UNPD]
NPO8840	Ptilidium ciliare	Species	Ptilidiaceae	Eukaryota	n.a.	n.a.	n.a.	Database[UNPD]
NPO26266	Isodon japonicus	Species	Lamiaceae	Eukaryota	n.a.	n.a.	n.a.	Database[UNPD]
NPO5591	Fucus spiralis	Species	Fucaceae	Eukaryota	n.a.	n.a.	n.a.	Database[UNPD]
NPO20132	Scutellaria seleriana	Species	Lamiaceae	Eukaryota	n.a.	n.a.	n.a.	Database[UNPD]
NPO2747	Hypericum triquetrifolium	Species	Hypericaceae	Eukaryota	n.a.	n.a.	n.a.	Database[UNPD]
NPO715	Teucrium pestalozzae	Species	Lamiaceae	Eukaryota	n.a.	n.a.	n.a.	Database[UNPD]
NPO24652	Toxicodendron succedaneum	Species	Anacardiaceae	Eukaryota	n.a.	n.a.	n.a.	Database[UNPD]
NPO8472	Knightia deplanchei	Species	Proteaceae	Eukaryota	n.a.	n.a.	n.a.	Database[UNPD]
NPO3936	Malva sylvestris	Species	Malvaceae	Eukaryota	n.a.	n.a.	n.a.	Database[UNPD]
NPO3664	Mesembryanthemum anatomicum	Species	Aizoaceae	Eukaryota	n.a.	n.a.	n.a.	Database[UNPD]
NPO8585	Verpa digitaliformis	Species	Morchellaceae	Eukaryota	n.a.	n.a.	n.a.	Database[UNPD]
NPO6377	Cocculus diversifolius	Species	Menispermaceae	Eukaryota	n.a.	n.a.	n.a.	Database[UNPD]
NPO7097	Rhynchosporium orthosporum	Species	n.a.	Eukaryota	n.a.	n.a.	n.a.	Database[UNPD]
NPO12987	Rhododendron farrerae	Species	Ericaceae	Eukaryota	n.a.	n.a.	n.a.	Database[UNPD]
NPO6974	Solanum racemigerum	Species	Solanaceae	Eukaryota	n.a.	n.a.	n.a.	Database[UNPD]
NPO13325	Plantago lanceolata	Species	Plantaginaceae	Eukaryota	n.a.	n.a.	n.a.	Database[UNPD]
NPO1607	Croton rhamnifolius	Species	Euphorbiaceae	Eukaryota	n.a.	n.a.	n.a.	Database[UNPD]
NPO6520	Myrica multiflora	Species	Myricaceae	Eukaryota	n.a.	n.a.	n.a.	Database[UNPD]
NPO5980	Eria subsessilis	Species	Orchidaceae	Eukaryota	n.a.	n.a.	n.a.	Database[UNPD]
NPO3146	Ammodendron conollyi	Species	Fabaceae	Eukaryota	n.a.	n.a.	n.a.	Database[UNPD]
NPO2518	Crinum kirkii	Species	Amaryllidaceae	Eukaryota	n.a.	n.a.	n.a.	Database[UNPD]
NPO4253	Viguiera annua	Species	Asteraceae	Eukaryota	n.a.	n.a.	n.a.	Database[UNPD]
NPO1308	Veronica pectinata	Species	Plantaginaceae	Eukaryota	n.a.	n.a.	n.a.	Database[UNPD]
NPO10021	Nerium oleander	Species	Apocynaceae	Eukaryota	n.a.	n.a.	n.a.	Database[UNPD]
NPO18054	Curvularia coicis	Species	Pleosporaceae	Eukaryota	n.a.	n.a.	n.a.	Database[UNPD]

Note for Reference:
In addition to directly collecting NP source organism data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated them from below databases:
☉ UNPD: Universal Natural Products Database [PMID: 23638153].
☉ StreptomeDB: a database of streptomycetes natural products [PMID: 33051671].
☉ TM-MC: a database of medicinal materials and chemical compounds in Northeast Asian traditional medicine [PMID: 26156871].
☉ TCM@Taiwan: a Traditional Chinese Medicine database [PMID: 21253603].
☉ TCMID: a Traditional Chinese Medicine database [PMID: 29106634].
☉ TCMSP: The traditional Chinese medicine systems pharmacology database and analysis platform [PMID: 24735618].
☉ HerDing: a herb recommendation system to treat diseases using genes and chemicals [PMID: 26980517].
☉ MetaboLights: a metabolomics database [PMID: 27010336].
☉ FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].

NP Quantity Composition/Concentration

Organism ID	Organism Name	Organism Material Preparation	Organism Part	NP Quantity (Standard)	NP Quantity (Minimum)	NP Quantity (Maximum)	Quantity Unit	Reference

Note for Reference:
In addition to directly collecting NP quantitative data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated NP quantitative records for specific NP domains (e.g., NPS from foods or herbs) from domain-specific databases. These databases include:
☉ DUKE: Dr. Duke's Phytochemical and Ethnobotanical Databases.
☉ PHENOL EXPLORER: is the first comprehensive database on polyphenol content in foods [PMID: 24103452], its homepage can be accessed at here.
☉ FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].

Biological Activity

Activity Type	# Activity
IC50	4
Activity	3

Activity Type	# Activity
Cell line	4
Others	3

Molecular-level activity

Target ID	Target Type	Target Name	Target Organism	Activity Type	Activity Relation	Value	Unit	Reference

In vitro activity

Target ID	Target Type	Target Name	Target Organism	Activity Type	Activity Relation	Value	Unit	Reference
NPT1475	Cell line	WI-38 VA13	Homo sapiens	IC50	=	13400000.0	nM	PMID[17595134]
NPT65	Cell line	HepG2	Homo sapiens	IC50	=	76400000.0	nM	PMID[17595134]
NPT81	Cell line	A549	Homo sapiens	IC50	=	13900.0	nM	PMID[17595134]
NPT81	Cell line	A549	Homo sapiens	IC50	>	316000.0	nM	PMID[17595134]
NPT2	Others	Unspecified	n.a.	Activity	=	92.0	%	PMID[17595134]
NPT2	Others	Unspecified	n.a.	Activity	=	102.0	%	PMID[17595134]
NPT2	Others	Unspecified	n.a.	Activity	=	112.0	%	PMID[17595134]

In vivo activity

Target ID	Target Type	Target Name	Target Organism	Activity Type	Activity Relation	Value	Unit	Reference

Experimental ADME

Experiment Model	Experiment Tissue	ADME Type	ADME Relation	ADME Value	ADME Unit	Reference

Experimental Toxicity

Quantitative toxicity

Experiment Model	Experiment Organism	Toxicity Type	Toxicity Relation	Toxicity Value	Toxicity Unit	Reference

Common Abbreviations:
LC: Lethal Concentration; LD: Lethal Dose; LT:Lethal Time; NOAEL: No-observed-adverse-effect Level; BMDL: Benchmark Dose Lower Confidence Limit; BMD: Benchmark Dose; BMC:Benchmark Concentration; LOAEL: Lowest Observed Adverse Effect Level; RfD:Reference Dose; RfC:Reference Concentration; MRL: Minimal Risk Level; MEG: Maximum Exposure Guideline; PAC: Protective Action Criteria

Categorical toxicity labels

Hepatotoxicity	Carcinogenicity	Mutagenicity	Cardiotoxicity	Respiratory Toxicity	Eye Irritation	Endocrine Disruption

Note for Reference:
In addition to directly collecting NP quantitative data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated NP toxicity records from domain-specific databases. These databases include:
☉ ToxValDB: a curated database that compiles quantitative toxicity values for chemicals from diverse public sources to support toxicological research and risk assessment.
☉ TOXRIC: a comprehensive, free-to-access, online database providing toxicological/feature data. The toxicity labels are retrieved from this database. [PMID: 36400569]

Chemically structural similarity

Similar Active Natural Products in NPASS

Top-200 similar NPs were calculated against the active-NP-set (includes approximately 50,000 NPs with experimentally-derived bioactivity available in NPASS)

Similarity is measured using the Tanimoto coefficient (Tc) , which compares the binary fingerprints of two molecules. Tc is calculated as the intersection divided by the union of '1' bits in the fingerprints, ranging from 0 to 1, with 1 indicating highest similarity.

● The left chart: Distribution of similarity level between NPC290693 and all remaining natural products in the NPASS database.
● The right table: Most similar natural products (Tc>=0.5 or Top200).

range	Tanimoto Coefficient
0-0.1	15985
0.1-0.2	30726
0.2-0.3	2904
0.3-0.4	182
0.4-0.5	44
0.5-0.6	8
0.6-0.7	6
0.7-0.8	0
0.8-0.85	0
0.85-0.9	0
0.9-0.95	0
0.95-1	0

Similarity Score	Similarity Level	Natural Product ID
0.7561	Intermediate Similarity	NPC268326
0.7561	Intermediate Similarity	NPC153085
0.7209	Intermediate Similarity	NPC115349
0.6207	Remote Similarity	NPC152615
0.6023	Remote Similarity	NPC84949
0.6023	Remote Similarity	NPC480562
0.6023	Remote Similarity	NPC74945
0.6023	Remote Similarity	NPC31354
0.6023	Remote Similarity	NPC69576
0.5909	Remote Similarity	NPC99080
0.5532	Remote Similarity	NPC103534
0.5532	Remote Similarity	NPC44899
0.5532	Remote Similarity	NPC304260
0.5532	Remote Similarity	NPC29639
0.5521	Remote Similarity	NPC603096
0.5376	Remote Similarity	NPC483822
0.5054	Remote Similarity	NPC34390

Similar Clinical/Approved Drugs

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules.

● The left chart: Distribution of similarity level between NPC290693 and all drugs/candidates.
● The right table: Most similar clinical/approved drugs (Tc>=0.5 or Top200).

range	Tanimoto Coefficient
0-0.1	6353
0.1-0.2	2729
0.2-0.3	54
0.3-0.4	4
0.4-0.5	7
0.5-0.6	3
0.6-0.7	0
0.7-0.8	0
0.8-0.85	0
0.85-0.9	0
0.9-0.95	0
0.95-1	0

Similarity Score	Similarity Level	Drug ID	Developmental Stage
0.51	Remote Similarity	NPD8377	Phase 4
0.505	Remote Similarity	NPD8378	Pre-clinical
0.505	Remote Similarity	NPD8379	Approved

Bioactivity similarity

Similar Natural Products in NPASS

Similarity level is defined by Bioactivity similarity was calculated based on bioactivity descriptors of compounds. The bioactivity descriptors were calculated by a recently developed AI algorithm Chemical Checker (CC) [Nature Biotechnology, 38:1087–1096, 2020; Nature Communications, 12:3932, 2021], which evaluated bioactivity similarities at five levels:
☉ A: chemistry similarity;
☉ B: biological targets similarity;
☉ C: networks similarity;
☉ D: cell-based bioactivity similarity;
☉ E: similarity based on clinical data.
Those 5 categories of CC bioactivity descriptors were calculated and then subjected to manifold projection using UMAP algorithm, to project all NPs on a 2-Dimensional space. The current NP was highlighted with a small circle in the 2-D map. Below figures: left-to-right, A-to-E.

A: chemistry similarity

B: biological targets similarity

C: networks similarity

D: cell-based bioactivity similarity

E: similarity based on clinical data