Natural Product: NPC474727

Natural Product IDNPC474727
Common Name
?
The InCHIKey will be temporarily assigned as the "Common Name" if no IUPAC name or alternative short name is available.
25-Acetoxy-3R-Hydroxyolean-12-En-28-Oic Acid
IUPAC Name (4aS,6aS,6aS,6bR,10R,12aS,14bS)-12a-(acetyloxymethyl)-10-hydroxy-2,2,6a,6b,9,9-hexamethyl-1,3,4,5,6,6a,7,8,8a,10,11,12,13,14b-tetradecahydropicene-4a-carboxylic acid
Synonyms
Synthetic Gene Cluster n.a.
ChEMBL Identifier CHEMBL480497
PubChem CID 11420932
Chemical Classification
  • CHEMONTID:0000000 [Organic compounds]
    • [CHEMONTID:0000012] Lipids and lipid-like molecules
      • [CHEMONTID:0000259] Prenol lipids
        • [CHEMONTID:0001553] Triterpenoids

The Chemical Classification was calculated by Classyfire, a software for chemical taxonomy calculation. Reference: DOI:10.1186/s13321-016-0174-y.

  Chemical Representations

Standard InCHIKey FHWNEUNAQWTXBE-LPRJUICTSA-N
Standard InCHI InChI=1S/C32H50O5/c1-20(33)37-19-32-13-11-25(34)28(4,5)23(32)10-12-30(7)24(32)9-8-21-22-18-27(2,3)14-16-31(22,26(35)36)17-15-29(21,30)6/h8,22-25,34H,9-19H2,1-7H3,(H,35,36)/t22-,23?,24-,25+,29+,30+,31-,32+/m0/s1
SMILES CC(=O)OC[C@]12CC[C@H](C(C)(C)C1CC[C@]1(C)[C@@H]2CC=C2[C@@H]3CC(C)(C)CC[C@@]3(CC[C@@]12C)C(=O)O)O

  Calculated Properties

Physi-Chem Properties

MedChem Properties

ADMET Properties (ADMETlab3.0)

ADMET: Absorption

ADMET: Distribution

ADMET: Metabolism

ADMET: Excretion

ADMET: Toxicity

  Species Source

Organism ID Organism Name Taxonomy Level Family SuperKingdom Isolation Part Collection Location Collection Time Reference
NPO40714 Cones liquidamber styraciflua Strain n.a. n.a. n.a. n.a. n.a. PMID[15270558]
NPO32560 liquidamber styraciflua Species n.a. n.a. n.a. n.a. n.a. PMID[16441087]

Note for Reference:
In addition to directly collecting NP source organism data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated them from below databases:
UNPD: Universal Natural Products Database [PMID: 23638153].
StreptomeDB: a database of streptomycetes natural products [PMID: 33051671].
TM-MC: a database of medicinal materials and chemical compounds in Northeast Asian traditional medicine [PMID: 26156871].
TCM@Taiwan: a Traditional Chinese Medicine database [PMID: 21253603].
TCMID: a Traditional Chinese Medicine database [PMID: 29106634].
TCMSP: The traditional Chinese medicine systems pharmacology database and analysis platform [PMID: 24735618].
HerDing: a herb recommendation system to treat diseases using genes and chemicals [PMID: 26980517].
MetaboLights: a metabolomics database [PMID: 27010336].
FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].



  NP Quantity Composition/Concentration

Organism ID Organism Name Organism Material Preparation Organism Part NP Quantity (Standard) NP Quantity (Minimum) NP Quantity (Maximum) Quantity Unit Reference

Note for Reference:
In addition to directly collecting NP quantitative data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated NP quantitative records for specific NP domains (e.g., NPS from foods or herbs) from domain-specific databases. These databases include:
DUKE: Dr. Duke's Phytochemical and Ethnobotanical Databases.
PHENOL EXPLORER: is the first comprehensive database on polyphenol content in foods [PMID: 24103452], its homepage can be accessed at here.
FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].



 Biological Activity

Molecular-level activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference

In vitro activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference
NPT306 Cell line PC-3 Homo sapiens GI50 = 11481.54 nM PubChem BioAssay data set
NPT90 Cell line DU-145 Homo sapiens GI50 = 13182.57 nM PMID[16562826]
NPT2723 Cell line MKN-74 Homo sapiens GI50 = 7762.47 nM PMID[16562826]
NPT1097 Cell line MKN-45 Homo sapiens GI50 = 17782.79 nM PMID[16562826]
NPT1179 Cell line MKN-28 Homo sapiens GI50 = 5623.41 nM PMID[16562826]
NPT2722 Cell line St-4 Homo sapiens GI50 = 9120.11 nM PMID[16562826]
NPT369 Cell line ACHN Homo sapiens GI50 = 5370.32 nM PMID[18590312]
NPT146 Cell line SK-OV-3 Homo sapiens GI50 = 20417.38 nM PMID[18590312]
NPT381 Cell line OVCAR-8 Homo sapiens GI50 = 11220.18 nM PMID[8133298]
NPT382 Cell line OVCAR-5 Homo sapiens GI50 = 18197.01 nM PMID[23571415]
NPT456 Cell line OVCAR-4 Homo sapiens GI50 = 10000.0 nM PMID[18590312]
NPT377 Cell line OVCAR-3 Homo sapiens GI50 = 10964.78 nM PMID[8133298]
NPT390 Cell line LOX IMVI Homo sapiens GI50 = 11220.18 nM PMID[8133298]
NPT576 Cell line DMS-114 Homo sapiens GI50 = 13489.63 nM PMID[22676269]
NPT572 Cell line DMS-273 Homo sapiens GI50 = 6309.57 nM PMID[11087618]
NPT81 Cell line A549 Homo sapiens GI50 = 4265.8 nM PMID[26169123]
NPT397 Cell line NCI-H460 Homo sapiens GI50 = 13803.84 nM PMID[17844994]
NPT455 Cell line NCI-H522 Homo sapiens GI50 = 13803.84 nM PMID[26169123]
NPT405 Cell line NCI-H226 Homo sapiens GI50 = 18620.87 nM PMID[26169123]
NPT370 Cell line NCI-H23 Homo sapiens GI50 = 8511.38 nM PMID[26169123]
NPT393 Cell line HCT-116 Homo sapiens GI50 = 4570.88 nM PMID[17844994]
NPT148 Cell line HCT-15 Homo sapiens GI50 = 6456.54 nM PMID[26169123]
NPT139 Cell line HT-29 Homo sapiens GI50 = 3388.44 nM PMID[26169123]
NPT386 Cell line KM12 Homo sapiens GI50 = 5128.61 nM PMID[26305181]
NPT391 Cell line HCC 2998 Homo sapiens GI50 = 28183.83 nM PMID[26305181]
NPT578 Cell line SNB-78 Homo sapiens GI50 = 15848.93 nM PMID[18314958]
NPT392 Cell line SNB-75 Homo sapiens GI50 = 15848.93 nM PMID[26996372]
NPT374 Cell line SF-539 Homo sapiens GI50 = 6309.57 nM PMID[11520219]
NPT399 Cell line SF-295 Homo sapiens GI50 = 8709.64 nM PMID[23639538]
NPT395 Cell line SF-268 Homo sapiens GI50 = 15488.17 nM PMID[23639538]
NPT380 Cell line U-251 Homo sapiens GI50 = 6025.6 nM PMID[15497935]
NPT82 Cell line MDA-MB-231 Homo sapiens GI50 = 19498.45 nM PMID[15497935]
NPT83 Cell line MCF7 Homo sapiens GI50 = 8317.64 nM PMID[18980381]
NPT2398 Cell line MKN-7 Homo sapiens GI50 = 6606.93 nM PMID[8984155]
NPT168 Cell line P388 Mus musculus ED50 = 28.22 uM PMID[10924160]
NPT81 Cell line A549 Homo sapiens ED50 = 13.31 uM PMID[10924160]
NPT20529 Non-molecular NON-PROTEIN TARGET n.a. GI50 = 10964.78 nM PMID[15270558]
NPT20529 Non-molecular NON-PROTEIN TARGET n.a. GI50 = 11748.98 nM PMID[15270558]
NPT20529 Non-molecular NON-PROTEIN TARGET n.a. GI50 = 10715.19 nM PMID[15270558]
NPT20529 Non-molecular NON-PROTEIN TARGET n.a. GI50 = 7943.28 nM PMID[15270558]

In vivo activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference





 Experimental ADME

Experiment Model Experiment Tissue ADME Type ADME Relation ADME Value ADME Unit Reference





 Experimental Toxicity

Quantitative toxicity

Experiment Model Experiment Organism Toxicity Type Toxicity Relation Toxicity Value Toxicity Unit Reference

Common Abbreviations:
LC: Lethal Concentration; LD: Lethal Dose; LT:Lethal Time; NOAEL: No-observed-adverse-effect Level; BMDL: Benchmark Dose Lower Confidence Limit; BMD: Benchmark Dose; BMC:Benchmark Concentration; LOAEL: Lowest Observed Adverse Effect Level; RfD:Reference Dose; RfC:Reference Concentration; MRL: Minimal Risk Level; MEG: Maximum Exposure Guideline; PAC: Protective Action Criteria

Categorical toxicity labels

Hepatotoxicity Carcinogenicity Mutagenicity Cardiotoxicity Respiratory Toxicity Eye Irritation Endocrine Disruption
Hepatotoxicity Carcinogenicity Mutagenicity Cardiotoxicity Respiratory Toxicity Eye Irritation Endocrine Disruption

Note for Reference:
In addition to directly collecting NP quantitative data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated NP toxicity records from domain-specific databases. These databases include:
ToxValDB: a curated database that compiles quantitative toxicity values for chemicals from diverse public sources to support toxicological research and risk assessment.
TOXRIC: a comprehensive, free-to-access, online database providing toxicological/feature data. The toxicity labels are retrieved from this database. [PMID: 36400569]


  Chemically structural similarity

Similar Active Natural Products in NPASS

Top-200 similar NPs were calculated against the active-NP-set (includes approximately 50,000 NPs with experimentally-derived bioactivity available in NPASS)

Similarity is measured using the Tanimoto coefficient (Tc) , which compares the binary fingerprints of two molecules. Tc is calculated as the intersection divided by the union of '1' bits in the fingerprints, ranging from 0 to 1, with 1 indicating highest similarity.

●  The left chart: Distribution of similarity level between NPC474727 and all remaining natural products in the NPASS database.
●  The right table: Most similar natural products (Tc>=0.5 or Top200).

Similarity Score Similarity Level Natural Product ID
0.7353 Intermediate Similarity NPC480946
0.7353 Intermediate Similarity NPC130577
0.7353 Intermediate Similarity NPC142415
0.7353 Intermediate Similarity NPC102683
0.6944 Remote Similarity NPC474963
0.6575 Remote Similarity NPC298554
0.6528 Remote Similarity NPC270768
0.6528 Remote Similarity NPC59263
0.6528 Remote Similarity NPC210106
0.6301 Remote Similarity NPC182797
0.6301 Remote Similarity NPC64872
0.6301 Remote Similarity NPC84319
0.6301 Remote Similarity NPC25906
0.6301 Remote Similarity NPC52021
0.6301 Remote Similarity NPC52169
0.6301 Remote Similarity NPC488562
0.6301 Remote Similarity NPC599947
0.6164 Remote Similarity NPC198664
0.6 Remote Similarity NPC231063
0.6 Remote Similarity NPC282395
0.6 Remote Similarity NPC158141
0.6 Remote Similarity NPC481360
0.6 Remote Similarity NPC110308
0.5921 Remote Similarity NPC228784
0.5921 Remote Similarity NPC324341
0.5921 Remote Similarity NPC120840
0.5921 Remote Similarity NPC601810
0.5889 Remote Similarity NPC198621
0.5889 Remote Similarity NPC216940
0.5867 Remote Similarity NPC282616
0.5867 Remote Similarity NPC275809
0.5867 Remote Similarity NPC156981
0.5789 Remote Similarity NPC106112
0.5789 Remote Similarity NPC261935
0.5789 Remote Similarity NPC130278
0.5733 Remote Similarity NPC187722
0.5714 Remote Similarity NPC200752
0.5696 Remote Similarity NPC296164
0.5676 Remote Similarity NPC161751
0.5676 Remote Similarity NPC474972
0.5676 Remote Similarity NPC600543
0.5667 Remote Similarity NPC475611
0.5658 Remote Similarity NPC121798
0.5658 Remote Similarity NPC234346
0.5641 Remote Similarity NPC91010
0.5625 Remote Similarity NPC96580
0.5618 Remote Similarity NPC284807
0.5616 Remote Similarity NPC604575
0.5581 Remote Similarity NPC283849
0.5581 Remote Similarity NPC28198
0.5581 Remote Similarity NPC476123
0.5568 Remote Similarity NPC100383
0.5513 Remote Similarity NPC202728
0.5513 Remote Similarity NPC158059
0.5476 Remote Similarity NPC603645
0.5455 Remote Similarity NPC51700
0.5455 Remote Similarity NPC37038
0.5455 Remote Similarity NPC88716
0.5455 Remote Similarity NPC68160
0.5455 Remote Similarity NPC606443
0.5444 Remote Similarity NPC473538
0.5422 Remote Similarity NPC481362
0.5385 Remote Similarity NPC472149
0.5376 Remote Similarity NPC262970
0.5375 Remote Similarity NPC130520
0.5325 Remote Similarity NPC474806
0.5325 Remote Similarity NPC133579
0.5316 Remote Similarity NPC139570
0.5316 Remote Similarity NPC291028
0.5316 Remote Similarity NPC293564
0.5309 Remote Similarity NPC222047
0.5287 Remote Similarity NPC204407
0.5287 Remote Similarity NPC473576
0.5263 Remote Similarity NPC280654
0.5256 Remote Similarity NPC307282
0.5256 Remote Similarity NPC32118
0.5238 Remote Similarity NPC188833
0.5227 Remote Similarity NPC473483
0.5227 Remote Similarity NPC475570
0.5227 Remote Similarity NPC606107
0.519 Remote Similarity NPC609452
0.5161 Remote Similarity NPC171007
0.5161 Remote Similarity NPC190849
0.5125 Remote Similarity NPC29765
0.5111 Remote Similarity NPC286347
0.5109 Remote Similarity NPC294112
0.5063 Remote Similarity NPC229281
0.5059 Remote Similarity NPC23241
0.5054 Remote Similarity NPC191410

Similar Clinical/Approved Drugs

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules.

●  The left chart: Distribution of similarity level between NPC474727 and all drugs/candidates.
●  The right table: Most similar clinical/approved drugs (Tc>=0.5 or Top200).

Similarity Score Similarity Level Drug ID Developmental Stage
NPD

Bioactivity similarity

  Bioactivity similarity

Similar Natural Products in NPASS

Similarity level is defined by Bioactivity similarity was calculated based on bioactivity descriptors of compounds. The bioactivity descriptors were calculated by a recently developed AI algorithm Chemical Checker (CC) [Nature Biotechnology, 38:1087–1096, 2020; Nature Communications, 12:3932, 2021], which evaluated bioactivity similarities at five levels:
A: chemistry similarity;
B: biological targets similarity;
C: networks similarity;
D: cell-based bioactivity similarity;
E: similarity based on clinical data.
Those 5 categories of CC bioactivity descriptors were calculated and then subjected to manifold projection using UMAP algorithm, to project all NPs on a 2-Dimensional space. The current NP was highlighted with a small circle in the 2-D map. Below figures: left-to-right, A-to-E.

A: chemistry similarity
B: biological targets similarity
C: networks similarity
D: cell-based bioactivity similarity
E: similarity based on clinical data