Natural Product: NPC158059| Natural Product ID | NPC158059 |
|
Common Name
The InCHIKey will be temporarily assigned as the "Common Name" if no IUPAC name or alternative short name is available.
| Pomolic Acid |
| IUPAC Name | (1R,2R,4aS,6aR,6aS,6bR,8aR,10S,12aR,14bS)-1,10-dihydroxy-1,2,6a,6b,9,9,12a-heptamethyl-2,3,4,5,6,6a,7,8,8a,10,11,12,13,14b-tetradecahydropicene-4a-carboxylic acid |
| Synonyms | Pomolic Acid |
| Synthetic Gene Cluster | n.a. |
| ChEMBL Identifier | CHEMBL486986 |
| PubChem CID |
382831 |
| Chemical Classification |
|
The Chemical Classification was calculated by Classyfire, a software for chemical taxonomy calculation. Reference: DOI:10.1186/s13321-016-0174-y.
Chemical Representations
| Standard InCHIKey | ZZTYPLSBNNGEIS-OPAXANQDSA-N |
| Standard InCHI | InChI=1S/C30H48O4/c1-18-10-15-30(24(32)33)17-16-27(5)19(23(30)29(18,7)34)8-9-21-26(4)13-12-22(31)25(2,3)20(26)11-14-28(21,27)6/h8,18,20-23,31,34H,9-17H2,1-7H3,(H,32,33)/t18-,20+,21-,22+,23-,26+,27-,28-,29-,30+/m1/s1 |
| SMILES | O[C@H]1CC[C@]2([C@H](C1(C)C)CC[C@@]1([C@@H]2CC=C2[C@@]1(C)CC[C@@]1([C@H]2[C@](C)(O)[C@H](C)CC1)C(=O)O)C)C |
  Calculated Properties| Molecular Weight:   | 472.36 | Volume:   | 514.542 Van der Waals volume.
|
| Dense:   | 0.918 | LogP:   | 3.535 The logarithm of the n-octanol/water distribution coefficients.
|
| logD7.4:   | 3.159 The logarithm of the n-octanol/water distribution coefficient at pH=7.4.
|
LogS:   | -5.035 The logarithm of aqueous solubility value.
|
| Rotatable Bonds:   | 1.0 | Rigid Bonds:   | 27.0 |
| TPSA:   | 77.76 Topological Polar Surface Area.
|
H-Bond Acceptor:   | 4.0 |
| H-Bond Donor:   | 3.0 | Rings:   | 5.0 |
| Heavy Atoms:   | 4.0 |
| QED Drug-Likeness Score:   | 0.397 | GASA:   | 1.0 GASA represents the probability of being difficult to synthesize, ranging from 0 to 1.
|
| Synthetic Accessibility Score:   | 4.864 | Fsp3:   | 0.9 |
| MCE-18:   | 108.07 MCE-18 stands for medicinal chemistry evolution.MCE-18≥45 is considered a suitable value.
|
Lipinski Rule-of-5:   | Rejected |
| Pfizer Rule:   | Rejected | GSK Rule:   | Accepted |
| Golden Triangle Rule:   | Rejected | BMS Rule:   | 0 |
| Chelating Alert:   | 0 | PAINS Alert:   | 0 |
| Colloidal aggregators:   | 0.624 | Fluc inhibitor:   | 0.0 The fluc inhibitor value is the probability of being fLuc inhibitors, within the range of 0 to 1.
|
| Blue fluorescence:   | 0.06 The blue fluorescence value is the probability of being blue fluorescence, within the range of 0 to 1
|
Green fluorescence:   | 0.0 The green fluorescence value is the probability of being green fluorescence, within the range of 0 to 1
|
| Reactive compounds:   | 0.344 | Promiscuous compounds:   | 0.066 |
| Caco-2 Permeability:   | -5.529 | MDCK Permeability:   | -5.099 |
| Pgp-inhibitor:   | 0.0 | Pgp-substrate:   | 0.051 |
| PAMPA:   |
1.0 The experimental data for Peff was logarithmically transformed (logPeff). Molecules with log Peff values below 2.0 were classified as low-permeability (Category 0), while those with log Peff values exceeding 2.5 were classified as high-permeability (Category 1).
|
Human Intestinal Absorption (HIA):   | 0.004 |
| 20% Bioavailability (F20%):   | 0.601 | 30% Bioavailability (F30%):   | 0.091 |
| 50% Bioavailability (F50%):   | 0.983 |
| Blood-Brain-Barrier Penetration (BBB):   | 0.202 | MRP1:   | 0.997 |
| Plasma Protein Binding (PPB):   | 92.793% | Volume Distribution (VD):   | -0.463 |
| Fu: |
6.895% The fraction unbound in plasms.
|
OATP1B1 inhibitor:   | 1.0 |
| OATP1B3 inhibitor:   | 0.856 | BCRP inhibitor:   | 0.003 |
| BSEP inhibitor:   | 0.785 |
| CYP1A2-inhibitor:   | 0.003 | CYP1A2-substrate:   | 0.0 |
| CYP2C19-inhibitor:   | 0.451 | CYP2C19-substrate:   | 0.011 |
| CYP2C9-inhibitor:   | 0.767 | CYP2C9-substrate:   | 0.0 |
| CYP2D6-inhibitor:   | 0.0 | CYP2D6-substrate:   | 0.0 |
| CYP3A4-inhibitor:   | 0.193 | CYP3A4-substrate:   | 0.732 |
| CYP2B6-substrate:   | 0.0 | CYP2C8-inhibitor:   | 0.242 |
| HLM stability:   |
0.021 Human liver microsomal (HLM) stability. Category 0: stable+ (HLM > 30 min); Category 1: unstable- (HLM ≤ 30 min). The output value is the probability of human liver microsomal instability, where a value closer to 1 indicates a higher likelihood of instability.
|
| Clearance (CL):   | 3.906 | Half-life (T1/2):   | 0.91 |
| hERG Blockers:   | 0.025 | hERG Blockers (10um):   | 0.055 |
| Human Hepatotoxicity (H-HT):   | 0.675 | Drug-induced Liver Injury (DILI):   | 0.481 |
| AMES Toxicity:   | 0.364 | Rat Oral Acute Toxicity:   | 0.505 |
| Maximum Recommended Daily Dose:   | 0.551 | Skin Sensitization:   | 0.963 |
| Carcinogencity:   | 0.93 | Eye Corrosion:   | 0.032 |
| Eye Irritation:   | 0.639 | Respiratory Toxicity:   | 0.949 |
| Drug-induced Neurotoxicity:   | 0.113 | Ototoxicity:   | 0.605 |
| Hematotoxicity:   | 0.401 | Drug-induced Nephrotoxicity:   | 0.95 |
| Genotoxicity:   | 0.915 | RPMI-8226 Immunitoxicity:   | 0.044 |
| A549 Cytotoxicity:   | 0.362 | Hek293 Cytotoxicity:   | 0.249 |
| BCF:   |
0.962 Bioconcentration factors are used for considering secondary poisoning potential and assessing risks to human health via the food chain. The unit is -log10[(mg/L)/(1000*MW)].
|
IGC50:   |
3.569 48 hour Tetrahymena pyriformis IGC50. The unit of IGC50 is -log10[(mg/L)/(1000*MW)].
|
| LC50DM:   |
5.135 48 hour Daphnia magna LC50. The unit of LC50DM is -log10[(mg/L)/(1000*MW)].
|
LC50FM:   |
4.446 96 hour fathead minnow LC50. The unit of LC50FM is -log10[(mg/L)/(1000*MW)].
|
  Species Source| Organism ID | Organism Name | Taxonomy Level | Family | SuperKingdom | Isolation Part | Collection Location | Collection Time | Reference |
|---|---|---|---|---|---|---|---|---|
| NPO11144 | Centella asiatica | Species | Apiaceae | Eukaryota | n.a. | n.a. | n.a. |
PMID[ 17560738] |
| NPO28011 | Swertia japonica | Species | Gentianaceae | Eukaryota | n.a. | n.a. | n.a. | DOI[10.1007/BF02675902] |
| NPO11144 | Centella asiatica | Species | Apiaceae | Eukaryota | n.a. | n.a. | n.a. | DOI[10.1007/s11816-015-0350-y] |
| NPO22175 | Perovskia abrotanoides | Species | Lamiaceae | Eukaryota | n.a. | n.a. | n.a. | DOI[10.1016/j.indcrop.2015.01.015] |
| NPO3595 | Euscaphis japonica | Species | Staphyleaceae | Eukaryota | n.a. | twig | n.a. | DOI[10.1021/np1003593] |
| NPO28011 | Swertia japonica | Species | Gentianaceae | Eukaryota | n.a. | n.a. | n.a. | DOI[10.1055/s-2008-1074888] |
| NPO28011 | Swertia japonica | Species | Gentianaceae | Eukaryota | n.a. | n.a. | n.a. | DOI[10.1248/cpb.30.4088] |
| NPO28011 | Swertia japonica | Species | Gentianaceae | Eukaryota | n.a. | n.a. | n.a. |
PMID[10353265] |
| NPO20081 | Mycobacterium tuberculosis | Species | Mycobacteriaceae | Bacteria | n.a. | n.a. | n.a. |
PMID[10553679] |
| NPO22175 | Perovskia abrotanoides | Species | Lamiaceae | Eukaryota | n.a. | n.a. | n.a. |
PMID[11720520] |
| NPO20081 | Mycobacterium tuberculosis | Species | Mycobacteriaceae | Bacteria | n.a. | n.a. | n.a. |
PMID[12055308] |
| NPO9096 | Scutellaria lateriflora | Species | Lamiaceae | Eukaryota | n.a. | n.a. | n.a. |
PMID[12713409] |
| NPO20081 | Mycobacterium tuberculosis | Species | Mycobacteriaceae | Bacteria | n.a. | n.a. | n.a. |
PMID[15070765] |
| NPO28035 | Streptomyces fumanus | Species | Streptomycetaceae | Bacteria | n.a. | n.a. | n.a. |
PMID[15730262] |
| NPO13968 | Garcinia scortechinii | Species | Clusiaceae | Eukaryota | fruits | n.a. | n.a. |
PMID[16038540] |
| NPO14358 | Rhodobacter sphaeroides | Species | Rhodobacteraceae | Bacteria | n.a. | n.a. | n.a. |
PMID[1612412] |
| NPO9518 | Gardenia jasminoides | Species | Rubiaceae | Eukaryota | Fruits | n.a. | n.a. |
PMID[16309325] |
| NPO28391 | Euonymus nanoides | Species | Celastraceae | Eukaryota | n.a. | seed | n.a. |
PMID[16462067] |
| NPO22364 | Weigela subsessilis | Species | Caprifoliaceae | Eukaryota | n.a. | leaf | n.a. |
PMID[16595930] |
| NPO22364 | Weigela subsessilis | Species | Caprifoliaceae | Eukaryota | n.a. | stem | n.a. |
PMID[16595930] |
| NPO9518 | Gardenia jasminoides | Species | Rubiaceae | Eukaryota | n.a. | Seoul, Korea | 2000-Jun |
PMID[16643034] |
| NPO11144 | Centella asiatica | Species | Apiaceae | Eukaryota | n.a. | aerial part | n.a. |
PMID[17520525] |
| NPO5158 | Cecropia pachystachya | Species | Urticaceae | Eukaryota | n.a. | leaf | n.a. |
PMID[18260049] |
| NPO28528 | Bridelia ferruginea | Species | Phyllanthaceae | Eukaryota | roots | Gabon | 1987 |
PMID[18327911] |
| NPO28528 | Bridelia ferruginea | Species | Phyllanthaceae | Eukaryota | n.a. | n.a. | n.a. |
PMID[18327911] |
| NPO9518 | Gardenia jasminoides | Species | Rubiaceae | Eukaryota | fruit | n.a. | n.a. |
PMID[18505286] |
| NPO8068 | Blumea mollis | Species | Asteraceae | Eukaryota | n.a. | leaf | n.a. |
PMID[18566831] |
| NPO29554 | Diospyros kaki | Species | Ebenaceae | Eukaryota | leaves | n.a. | n.a. |
PMID[18798681] |
| NPO14162 | Chlorophytum borivilianum | Species | Asparagaceae | Eukaryota | roots | n.a. | n.a. |
PMID[19128156] |
| NPO20081 | Mycobacterium tuberculosis | Species | Mycobacteriaceae | Bacteria | n.a. | n.a. | n.a. |
PMID[19276083] |
| NPO9096 | Scutellaria lateriflora | Species | Lamiaceae | Eukaryota | n.a. | n.a. | n.a. |
PMID[19555121] |
| NPO9096 | Scutellaria lateriflora | Species | Lamiaceae | Eukaryota | aerial parts | n.a. | n.a. |
PMID[19555121] |
| NPO9518 | Gardenia jasminoides | Species | Rubiaceae | Eukaryota | fruit | n.a. | n.a. |
PMID[19650637] |
| NPO7016 | Gardenia tubifera | Species | Rubiaceae | Eukaryota | exudate | n.a. | n.a. |
PMID[20028108] |
| NPO20081 | Mycobacterium tuberculosis | Species | Mycobacteriaceae | Bacteria | n.a. | n.a. | n.a. |
PMID[20448045] |
| NPO10946 | Pseudallescheria boydii | Species | Microascaceae | Eukaryota | n.a. | n.a. | n.a. |
PMID[20509707] |
| NPO28217 | Septoria pistaciarum | Species | Mycosphaerellaceae | Eukaryota | n.a. | n.a. | n.a. |
PMID[20550123] |
| NPO12357 | Lycopus europaeus | Species | Lamiaceae | Eukaryota | n.a. | n.a. | n.a. |
PMID[20674349] |
| NPO20081 | Mycobacterium tuberculosis | Species | Mycobacteriaceae | Bacteria | n.a. | n.a. | n.a. |
PMID[20843794] |
| NPO3595 | Euscaphis japonica | Species | Staphyleaceae | Eukaryota | Twigs | Yangming mountain, Taiwan | 2008-APR |
PMID[20873721] |
| NPO11492 | Kopsia grandifolia | Species | Apocynaceae | Eukaryota | n.a. | stem | n.a. |
PMID[21428274] |
| NPO11492 | Kopsia grandifolia | Species | Apocynaceae | Eukaryota | n.a. | leaf | n.a. |
PMID[21428274] |
| NPO20081 | Mycobacterium tuberculosis | Species | Mycobacteriaceae | Bacteria | n.a. | n.a. | n.a. |
PMID[22194604] |
| NPO8650 | Perilla frutescens | Species | Lamiaceae | Eukaryota | leaves | n.a. | n.a. |
PMID[22272932] |
| NPO28217 | Septoria pistaciarum | Species | Mycosphaerellaceae | Eukaryota | n.a. | n.a. | n.a. |
PMID[22530813] |
| NPO11144 | Centella asiatica | Species | Apiaceae | Eukaryota | n.a. | n.a. | n.a. |
PMID[22966846] |
| NPO9518 | Gardenia jasminoides | Species | Rubiaceae | Eukaryota | fruits | n.a. | n.a. |
PMID[23305920] |
| NPO10946 | Pseudallescheria boydii | Species | Microascaceae | Eukaryota | n.a. | n.a. | n.a. |
PMID[23964677] |
| NPO20081 | Mycobacterium tuberculosis | Species | Mycobacteriaceae | Bacteria | n.a. | n.a. | n.a. |
PMID[24516143] |
| NPO20081 | Mycobacterium tuberculosis | Species | Mycobacteriaceae | Bacteria | n.a. | n.a. | n.a. |
PMID[25028392] |
| NPO8650 | Perilla frutescens | Species | Lamiaceae | Eukaryota | n.a. | n.a. | n.a. |
PMID[25320841] |
| NPO9096 | Scutellaria lateriflora | Species | Lamiaceae | Eukaryota | aerial part | n.a. | n.a. |
PMID[25442304] |
| NPO1795 | Fragaria vesca | Species | Rosaceae | Eukaryota | n.a. | fruit | n.a. |
PMID[26169681] |
| NPO20081 | Mycobacterium tuberculosis | Species | Mycobacteriaceae | Bacteria | n.a. | n.a. | n.a. |
PMID[26466957] |
| NPO20081 | Mycobacterium tuberculosis | Species | Mycobacteriaceae | Bacteria | n.a. | n.a. | n.a. |
PMID[26774486] |
| NPO28528 | Bridelia ferruginea | Species | Phyllanthaceae | Eukaryota | n.a. | n.a. | n.a. |
PMID[26938998] |
| NPO28011 | Swertia japonica | Species | Gentianaceae | Eukaryota | n.a. | n.a. | n.a. |
PMID[26996316] |
| NPO20081 | Mycobacterium tuberculosis | Species | Mycobacteriaceae | Bacteria | n.a. | n.a. | n.a. |
PMID[27242221] |
| NPO20081 | Mycobacterium tuberculosis | Species | Mycobacteriaceae | Bacteria | n.a. | n.a. | n.a. |
PMID[27807341] |
| NPO13017 | Nauclea latifolia | Species | Rubiaceae | Eukaryota | n.a. | n.a. | n.a. |
PMID[31429278] |
| NPO9518 | Gardenia jasminoides | Species | Rubiaceae | Eukaryota | n.a. | n.a. | n.a. |
PMID[32141747] |
| NPO29554 | Diospyros kaki | Species | Ebenaceae | Eukaryota | Leaves | n.a. | n.a. |
PMID[3430165] |
| NPO22175 | Perovskia abrotanoides | Species | Lamiaceae | Eukaryota | n.a. | n.a. | n.a. |
PMID[37770099] |
| NPO3595 | Euscaphis japonica | Species | Staphyleaceae | Eukaryota | n.a. | pericarp | n.a. |
PMID[4421158] |
| NPO28011 | Swertia japonica | Species | Gentianaceae | Eukaryota | n.a. | n.a. | n.a. |
PMID[5583807] |
| NPO20081 | Mycobacterium tuberculosis | Species | Mycobacteriaceae | Bacteria | n.a. | n.a. | n.a. |
PMID[8917504] |
| NPO20081 | Mycobacterium tuberculosis | Species | Mycobacteriaceae | Bacteria | n.a. | n.a. | n.a. |
PMID[97292] |
| NPO9467 | Rosa woodsii | Species | Rosaceae | Eukaryota | n.a. | leaf | n.a. |
PMID[9748372] |
| NPO16124 | Hyptis capitata | Species | Lamiaceae | Eukaryota | n.a. | whole plant | n.a. |
PMID[9748372] |
| NPO20081 | Mycobacterium tuberculosis | Species | Mycobacteriaceae | Bacteria | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO8650 | Perilla frutescens | Species | Lamiaceae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO9518 | Gardenia jasminoides | Species | Rubiaceae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO14358 | Rhodobacter sphaeroides | Species | Rhodobacteraceae | Bacteria | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO11144 | Centella asiatica | Species | Apiaceae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO28035 | Streptomyces fumanus | Species | Streptomycetaceae | Bacteria | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO3595 | Euscaphis japonica | Species | Staphyleaceae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO28011 | Swertia japonica | Species | Gentianaceae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO25776 | Buddleja scordioides | Species | Scrophulariaceae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO26254 | Fagus crenata | Species | Fagaceae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO26412 | Streptomyces tauricus | Species | Streptomycetaceae | Bacteria | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO3465 | Aconitum leucostomum | Species | Ranunculaceae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO13467 | Anarsia lineatella | Species | Gelechiidae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO14057 | Apollonias barbujana | Species | Lauraceae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO4004 | Aquilegia ecalcarata | Species | Ranunculaceae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO10550 | Artemisia hanseniana | Species | Asteraceae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO8068 | Blumea mollis | Species | Asteraceae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO13766 | Ceanothus velutinus | Species | Rhamnaceae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO14162 | Chlorophytum borivilianum | Species | Asparagaceae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO12509 | Dipterocarpus dyeri | Species | Dipterocarpaceae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO1795 | Fragaria vesca | Species | Rosaceae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO13968 | Garcinia scortechinii | Species | Clusiaceae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO7016 | Gardenia tubifera | Species | Rubiaceae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO13014 | Ipomoea cairica | Species | Convolvulaceae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO16703 | Isodon lophanthoides | Species | Lamiaceae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO11492 | Kopsia grandifolia | Species | Apocynaceae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO205 | Lasianthus fordii | Species | Rubiaceae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO11998 | Ledebouria socialis | Species | Hyacinthaceae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO12357 | Lycopus europaeus | Species | Lamiaceae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO746 | Panax innovans | Species | Araliaceae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO5191 | Penicillium cinerascens | Species | Aspergillaceae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO4671 | Persea mexicana | Species | Lauraceae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO8892 | Sordaria araneosa | Species | Sordariaceae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO13524 | Pyrola japonica | Species | Ericaceae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO28614 | Zieria smithii | Species | Rutaceae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO16765 | Knoxia valerianoides | Species | Rubiaceae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO28696 | Rhaponticum uniflorum | Species | Asteraceae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO27959 | Codonocarpus australis | Species | Gyrostemonaceae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO12450 | Cneorum pulverulentum | Species | Rutaceae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO28704 | Agaricus hortensis | Species | Agaricaceae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO9096 | Scutellaria lateriflora | Species | Lamiaceae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO3287 | Hymenoxys scaposa | Species | Asteraceae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO28481 | Cerbera dilatata | Species | Apocynaceae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO22175 | Perovskia abrotanoides | Species | Lamiaceae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO28509 | Achillea clypeolata | Species | Asteraceae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO16669 | Diospyros verrucosa | Species | Ebenaceae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO28528 | Bridelia ferruginea | Species | Phyllanthaceae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO28334 | Pyrola decorata | Species | Ericaceae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO16124 | Hyptis capitata | Species | Lamiaceae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO9467 | Rosa woodsii | Species | Rosaceae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO10946 | Pseudallescheria boydii | Species | Microascaceae | Eukaryota | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO28596 | Streptomyces lavendofoliae | Species | Streptomycetaceae | Bacteria | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO28656 | Lactobacillus casei | Species | Lactobacillaceae | Bacteria | n.a. | n.a. | n.a. | Database[COCONUT] |
| NPO29554 | Diospyros kaki | Species | Ebenaceae | Eukaryota | n.a. | n.a. | Database[FooDB] | |
| NPO8650 | Perilla frutescens | Species | Lamiaceae | Eukaryota | n.a. | n.a. | n.a. | Database[HerDing] |
| NPO9518 | Gardenia jasminoides | Species | Rubiaceae | Eukaryota | n.a. | n.a. | n.a. | Database[HerDing] |
| NPO13014 | Ipomoea cairica | Species | Convolvulaceae | Eukaryota | n.a. | n.a. | n.a. | Database[HerDing] |
| NPO28696 | Rhaponticum uniflorum | Species | Asteraceae | Eukaryota | n.a. | n.a. | n.a. | Database[HerDing] |
| NPO13524 | Pyrola japonica | Species | Ericaceae | Eukaryota | n.a. | n.a. | n.a. | Database[HerDing] |
| NPO28011 | Swertia japonica | Species | Gentianaceae | Eukaryota | n.a. | n.a. | n.a. | Database[HerDing] |
| NPO3595 | Euscaphis japonica | Species | Staphyleaceae | Eukaryota | n.a. | n.a. | n.a. | Database[HerDing] |
| NPO28576 | Berberis julianae | Species | Berberidaceae | Eukaryota | n.a. | n.a. | n.a. | Database[HerDing] |
| NPO11144 | Centella asiatica | Species | Apiaceae | Eukaryota | n.a. | n.a. | n.a. | Database[HerDing] |
| NPO12357 | Lycopus europaeus | Species | Lamiaceae | Eukaryota | n.a. | n.a. | n.a. | Database[HerDing] |
| NPO28334 | Pyrola decorata | Species | Ericaceae | Eukaryota | n.a. | n.a. | n.a. | Database[HerDing] |
| NPO1795 | Fragaria vesca | Species | Rosaceae | Eukaryota | n.a. | n.a. | n.a. | Database[HerDing] |
| NPO11144 | Centella asiatica | Species | Apiaceae | Eukaryota | n.a. | n.a. | n.a. | Database[MetaboLights] |
| NPO9518 | Gardenia jasminoides | Species | Rubiaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TCMID] |
| NPO13524 | Pyrola japonica | Species | Ericaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TCMID] |
| NPO28696 | Rhaponticum uniflorum | Species | Asteraceae | Eukaryota | n.a. | n.a. | n.a. | Database[TCMID] |
| NPO13014 | Ipomoea cairica | Species | Convolvulaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TCMID] |
| NPO11144 | Centella asiatica | Species | Apiaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TCMID] |
| NPO12357 | Lycopus europaeus | Species | Lamiaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TCMID] |
| NPO8650 | Perilla frutescens | Species | Lamiaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TCMID] |
| NPO3595 | Euscaphis japonica | Species | Staphyleaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TCMID] |
| NPO3465 | Aconitum leucostomum | Species | Ranunculaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TCMID] |
| NPO28011 | Swertia japonica | Species | Gentianaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TCMID] |
| NPO16703 | Isodon lophanthoides | Species | Lamiaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TCMID] |
| NPO12450 | Cneorum pulverulentum | Species | Rutaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TCMID] |
| NPO1795 | Fragaria vesca | Species | Rosaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TCMID] |
| NPO28576 | Berberis julianae | Species | Berberidaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TCMID] |
| NPO28334 | Pyrola decorata | Species | Ericaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TCMID] |
| NPO4004 | Aquilegia ecalcarata | Species | Ranunculaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TCMID] |
| NPO13968 | Garcinia scortechinii | Species | Clusiaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TCMID] |
| NPO16765 | Knoxia valerianoides | Species | Rubiaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TCMID] |
| NPO28576 | Berberis julianae | Species | Berberidaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TCM_Taiwan] |
| NPO9518 | Gardenia jasminoides | Species | Rubiaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TCM_Taiwan] |
| NPO8650 | Perilla frutescens | Species | Lamiaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TCM_Taiwan] |
| NPO13524 | Pyrola japonica | Species | Ericaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TCM_Taiwan] |
| NPO28334 | Pyrola decorata | Species | Ericaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TCM_Taiwan] |
| NPO11144 | Centella asiatica | Species | Apiaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TCM_Taiwan] |
| NPO13014 | Ipomoea cairica | Species | Convolvulaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TCM_Taiwan] |
| NPO28011 | Swertia japonica | Species | Gentianaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TCM_Taiwan] |
| NPO28696 | Rhaponticum uniflorum | Species | Asteraceae | Eukaryota | n.a. | n.a. | n.a. | Database[TCM_Taiwan] |
| NPO3465 | Aconitum leucostomum | Species | Ranunculaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TCM_Taiwan] |
| NPO16765 | Knoxia valerianoides | Species | Rubiaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TM-MC] |
| NPO8650 | Perilla frutescens | Species | Lamiaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TM-MC] |
| NPO9518 | Gardenia jasminoides | Species | Rubiaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TM-MC] |
| NPO22699 | Echinops setifer | Species | Asteraceae | Eukaryota | n.a. | n.a. | n.a. | Database[TM-MC] |
| NPO4163 | Echinopsis latifolius | Species | Cactaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TM-MC] |
| NPO11144 | Centella asiatica | Species | Apiaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TM-MC] |
| NPO13524 | Pyrola japonica | Species | Ericaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TM-MC] |
| NPO28696 | Rhaponticum uniflorum | Species | Asteraceae | Eukaryota | n.a. | n.a. | n.a. | Database[TM-MC] |
| NPO28011 | Swertia japonica | Species | Gentianaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TM-MC] |
| NPO5191 | Penicillium cinerascens | Species | Aspergillaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO8650 | Perilla frutescens | Species | Lamiaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO4671 | Persea mexicana | Species | Lauraceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO28509 | Achillea clypeolata | Species | Asteraceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO11492 | Kopsia grandifolia | Species | Apocynaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO13017 | Nauclea latifolia | Species | Rubiaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO28161 | Stephania sutchuenensis | Species | Menispermaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO28691 | Streptomyces odorifer | Species | Streptomycetaceae | Bacteria | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO27867 | Turbo argyrostoma | Species | Turbinidae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO8892 | Sordaria araneosa | Species | Sordariaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO14358 | Rhodobacter sphaeroides | Species | Rhodobacteraceae | Bacteria | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO28481 | Cerbera dilatata | Species | Apocynaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO10946 | Pseudallescheria boydii | Species | Microascaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO11441 | Barbacenia flava | Species | Velloziaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO13968 | Garcinia scortechinii | Species | Clusiaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO9096 | Scutellaria lateriflora | Species | Lamiaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO13766 | Ceanothus velutinus | Species | Rhamnaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO28576 | Berberis julianae | Species | Berberidaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO20395 | Athanasia crithmifolia | Species | Asteraceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO28053 | Quercus serrata | Species | Fagaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO29353 | Benzoin praecox | n.a. | n.a. | n.a. | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO28528 | Bridelia ferruginea | Species | Phyllanthaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO28334 | Pyrola decorata | Species | Ericaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO28391 | Euonymus nanoides | Species | Celastraceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO28374 | Pleogyne cunninghami | Species | Menispermaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO4004 | Aquilegia ecalcarata | Species | Ranunculaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO28073 | Crateva nurvala | Species | Capparaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO28200 | Unonopsis glaucopetala | Species | Annonaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO1795 | Fragaria vesca | Species | Rosaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO28217 | Septoria pistaciarum | Species | Mycosphaerellaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO16669 | Diospyros verrucosa | Species | Ebenaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO28704 | Agaricus hortensis | Species | Agaricaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO28131 | Polygala amara | Species | Polygalaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO14057 | Apollonias barbujana | Species | Lauraceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO16703 | Isodon lophanthoides | Species | Lamiaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO22175 | Perovskia abrotanoides | Species | Lamiaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO27943 | Cardamine pinnata | Species | Brassicaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO29115 | Rhinella arenarum | Species | Bufonidae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO27959 | Codonocarpus australis | Species | Gyrostemonaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO5158 | Cecropia pachystachya | Species | Urticaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO28035 | Streptomyces fumanus | Species | Streptomycetaceae | Bacteria | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO11998 | Ledebouria socialis | Species | Hyacinthaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO746 | Panax innovans | Species | Araliaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO12357 | Lycopus europaeus | Species | Lamiaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO28633 | Bystropogon origanifolius | Species | Lamiaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO10550 | Artemisia hanseniana | Species | Asteraceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO3465 | Aconitum leucostomum | Species | Ranunculaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO13467 | Anarsia lineatella | Species | Gelechiidae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO11144 | Centella asiatica | Species | Apiaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO14162 | Chlorophytum borivilianum | Species | Asparagaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO12509 | Dipterocarpus dyeri | Species | Dipterocarpaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO13014 | Ipomoea cairica | Species | Convolvulaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO6331 | Jacobaea subalpina | Species | Asteraceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO12450 | Cneorum pulverulentum | Species | Rutaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO20081 | Mycobacterium tuberculosis | Species | Mycobacteriaceae | Bacteria | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO7016 | Gardenia tubifera | Species | Rubiaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO205 | Lasianthus fordii | Species | Rubiaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO22364 | Weigela subsessilis | Species | Caprifoliaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO8068 | Blumea mollis | Species | Asteraceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO28656 | Lactobacillus casei | Species | Lactobacillaceae | Bacteria | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO28303 | Pleogyne cunninghamii | Species | Menispermaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO9518 | Gardenia jasminoides | Species | Rubiaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO28011 | Swertia japonica | Species | Gentianaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO27990 | Schizonepeta multifida | Species | Lamiaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO16124 | Hyptis capitata | Species | Lamiaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO3595 | Euscaphis japonica | Species | Staphyleaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO28614 | Zieria smithii | Species | Rutaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO28596 | Streptomyces lavendofoliae | Species | Streptomycetaceae | Bacteria | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO28670 | Mortierella elongata | Species | Mortierellaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO25704 | Tetraneuris acaulis | Species | Asteraceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO28269 | Rubus rosa | Species | Rosaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO26254 | Fagus crenata | Species | Fagaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO25776 | Buddleja scordioides | Species | Scrophulariaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO13524 | Pyrola japonica | Species | Ericaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO26412 | Streptomyces tauricus | Species | Streptomycetaceae | Bacteria | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO3287 | Hymenoxys scaposa | Species | Asteraceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO16765 | Knoxia valerianoides | Species | Rubiaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO9467 | Rosa woodsii | Species | Rosaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
| NPO28696 | Rhaponticum uniflorum | Species | Asteraceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
Note for Reference:
In addition to directly collecting NP source organism data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated them from below databases:
☉ UNPD: Universal Natural Products Database [PMID: 23638153].
☉ StreptomeDB: a database of streptomycetes natural products [PMID: 33051671].
☉ TM-MC: a database of medicinal materials and chemical compounds in Northeast Asian traditional medicine [PMID: 26156871].
☉ TCM@Taiwan: a Traditional Chinese Medicine database [PMID: 21253603].
☉ TCMID: a Traditional Chinese Medicine database [PMID: 29106634].
☉ TCMSP: The traditional Chinese medicine systems pharmacology database and analysis platform [PMID: 24735618].
☉ HerDing: a herb recommendation system to treat diseases using genes and chemicals [PMID: 26980517].
☉ MetaboLights: a metabolomics database [PMID: 27010336].
☉ FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].
  NP Quantity Composition/Concentration| Organism ID | Organism Name | Organism Material Preparation | Organism Part | NP Quantity (Standard) | NP Quantity (Minimum) | NP Quantity (Maximum) | Quantity Unit | Reference |
|---|
Note for Reference:
In addition to directly collecting NP quantitative data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated NP quantitative records for specific NP domains (e.g., NPS from foods or herbs) from domain-specific databases. These databases include:
☉ DUKE: Dr. Duke's Phytochemical and Ethnobotanical Databases.
☉ PHENOL EXPLORER: is the first comprehensive database on polyphenol content in foods [PMID: 24103452], its homepage can be accessed at here.
☉ FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].
Biological Activity
| Target ID | Target Type | Target Name | Target Organism | Activity Type | Activity Relation | Value | Unit | Reference |
|---|---|---|---|---|---|---|---|---|
| NPT178 | Individual protein | Protein-tyrosine phosphatase 1B | Homo sapiens | IC50 | = | 3900.0 | nM | PMID[18798681] |
| NPT5212 | Individual protein | Sentrin-specific protease 1 | Homo sapiens | Inhibition | > | 100.0 | % | PMID[35500202] |
| NPT5212 | Individual protein | Sentrin-specific protease 1 | Homo sapiens | IC50 | = | 5100.0 | nM | PMID[35500202] |
| NPT5212 | Individual protein | Sentrin-specific protease 1 | Homo sapiens | Inhibition | n.a. | n.a. | % | PMID[35500202] |
| Target ID | Target Type | Target Name | Target Organism | Activity Type | Activity Relation | Value | Unit | Reference |
|---|---|---|---|---|---|---|---|---|
| NPT759 | Cell line | H9 | Homo sapiens | EC50 | = | 1.4 | ug.mL-1 | PMID[9748372] |
| NPT759 | Cell line | H9 | Homo sapiens | EC50 | = | 3000.0 | nM | PMID[11141100] |
| NPT81 | Cell line | A549 | Homo sapiens | IC50 | = | 17220.0 | nM | PMID[20176479] |
| NPT146 | Cell line | SK-OV-3 | Homo sapiens | IC50 | = | 13950.0 | nM | PMID[20176479] |
| NPT147 | Cell line | SK-MEL-2 | Homo sapiens | IC50 | = | 19160.0 | nM | PMID[20176479] |
| NPT148 | Cell line | HCT-15 | Homo sapiens | IC50 | = | 13720.0 | nM | PMID[20176479] |
| NPT83 | Cell line | MCF7 | Homo sapiens | Activity | = | 79.0 | % | PMID[20873721] |
| NPT397 | Cell line | NCI-H460 | Homo sapiens | Activity | = | 82.0 | % | PMID[20873721] |
| NPT139 | Cell line | HT-29 | Homo sapiens | Activity | = | 91.0 | % | PMID[20873721] |
| NPT404 | Cell line | CCRF-CEM | Homo sapiens | Activity | = | 92.0 | % | PMID[20873721] |
| NPT367 | Cell line | MDA-N | Homo sapiens | GI50 | n.a. | 16330.52 | nM | PubChem BioAssay data set |
| NPT368 | Cell line | SN12C | Homo sapiens | GI50 | n.a. | 13645.83 | nM | PubChem BioAssay data set |
| NPT370 | Cell line | NCI-H23 | Homo sapiens | GI50 | n.a. | 18706.82 | nM | PubChem BioAssay data set |
| NPT369 | Cell line | ACHN | Homo sapiens | GI50 | n.a. | 16519.62 | nM | PubChem BioAssay data set |
| NPT371 | Cell line | UO-31 | Homo sapiens | GI50 | n.a. | 11297.96 | nM | PubChem BioAssay data set |
| NPT372 | Cell line | HOP-92 | Homo sapiens | GI50 | n.a. | 4446.31 | nM | PubChem BioAssay data set |
| NPT116 | Cell line | HL-60 | Homo sapiens | GI50 | n.a. | 4345.1 | nM | PubChem BioAssay data set |
| NPT90 | Cell line | DU-145 | Homo sapiens | GI50 | n.a. | 8974.29 | nM | PubChem BioAssay data set |
| NPT374 | Cell line | SF-539 | Homo sapiens | GI50 | n.a. | 3250.87 | nM | PubChem BioAssay data set |
| NPT375 | Cell line | Malme-3M | Homo sapiens | GI50 | n.a. | 12331.05 | nM | PubChem BioAssay data set |
| NPT376 | Cell line | A498 | Homo sapiens | GI50 | n.a. | 18967.06 | nM | PubChem BioAssay data set |
| NPT111 | Cell line | K562 | Homo sapiens | GI50 | n.a. | 6486.34 | nM | PubChem BioAssay data set |
| NPT377 | Cell line | OVCAR-3 | Homo sapiens | GI50 | n.a. | 18578.04 | nM | PubChem BioAssay data set |
| NPT112 | Cell line | MOLT-4 | Homo sapiens | GI50 | n.a. | 4864.07 | nM | PubChem BioAssay data set |
| NPT378 | Cell line | NCI/ADR-RES | Homo sapiens | GI50 | n.a. | 15488.17 | nM | PubChem BioAssay data set |
| NPT380 | Cell line | U-251 | Homo sapiens | GI50 | n.a. | 14125.38 | nM | PubChem BioAssay data set |
| NPT382 | Cell line | OVCAR-5 | Homo sapiens | GI50 | n.a. | 17701.09 | nM | PubChem BioAssay data set |
| NPT381 | Cell line | OVCAR-8 | Homo sapiens | GI50 | n.a. | 20183.66 | nM | PubChem BioAssay data set |
| NPT383 | Cell line | SNB-19 | Homo sapiens | GI50 | n.a. | 15667.51 | nM | PubChem BioAssay data set |
| NPT82 | Cell line | MDA-MB-231 | Homo sapiens | GI50 | n.a. | 8790.23 | nM | PubChem BioAssay data set |
| NPT384 | Cell line | TK-10 | Homo sapiens | GI50 | n.a. | 14454.4 | nM | PubChem BioAssay data set |
| NPT385 | Cell line | SR | Homo sapiens | GI50 | n.a. | 13867.56 | nM | PubChem BioAssay data set |
| NPT323 | Cell line | SW-620 | Homo sapiens | GI50 | n.a. | 21928.05 | nM | PubChem BioAssay data set |
| NPT455 | Cell line | NCI-H522 | Homo sapiens | GI50 | n.a. | 13867.56 | nM | PubChem BioAssay data set |
| NPT386 | Cell line | KM12 | Homo sapiens | GI50 | n.a. | 12416.52 | nM | PubChem BioAssay data set |
| NPT387 | Cell line | M14 | Homo sapiens | GI50 | n.a. | 2978.52 | nM | PubChem BioAssay data set |
| NPT389 | Cell line | RPMI-8226 | Homo sapiens | GI50 | n.a. | 16255.49 | nM | PubChem BioAssay data set |
| NPT456 | Cell line | OVCAR-4 | Homo sapiens | GI50 | n.a. | 16826.74 | nM | PubChem BioAssay data set |
| NPT390 | Cell line | LOX IMVI | Homo sapiens | GI50 | n.a. | 15739.83 | nM | PubChem BioAssay data set |
| NPT457 | Cell line | BT-549 | Homo sapiens | GI50 | n.a. | 14387.99 | nM | PubChem BioAssay data set |
| NPT147 | Cell line | SK-MEL-2 | Homo sapiens | GI50 | n.a. | 17100.15 | nM | PubChem BioAssay data set |
| NPT81 | Cell line | A549 | Homo sapiens | GI50 | n.a. | 17218.69 | nM | PubChem BioAssay data set |
| NPT391 | Cell line | HCC 2998 | Homo sapiens | GI50 | n.a. | 14996.85 | nM | PubChem BioAssay data set |
| NPT392 | Cell line | SNB-75 | Homo sapiens | GI50 | n.a. | 13489.63 | nM | PubChem BioAssay data set |
| NPT148 | Cell line | HCT-15 | Homo sapiens | GI50 | n.a. | 10616.96 | nM | PubChem BioAssay data set |
| NPT393 | Cell line | HCT-116 | Homo sapiens | GI50 | n.a. | 12246.16 | nM | PubChem BioAssay data set |
| NPT395 | Cell line | SF-268 | Homo sapiens | GI50 | n.a. | 17139.57 | nM | PubChem BioAssay data set |
| NPT394 | Cell line | EKVX | Homo sapiens | GI50 | n.a. | 18323.14 | nM | PubChem BioAssay data set |
| NPT83 | Cell line | MCF7 | Homo sapiens | GI50 | n.a. | 19952.62 | nM | PubChem BioAssay data set |
| NPT146 | Cell line | SK-OV-3 | Homo sapiens | GI50 | n.a. | 17947.34 | nM | PubChem BioAssay data set |
| NPT396 | Cell line | T47D | Homo sapiens | GI50 | n.a. | 16368.17 | nM | PubChem BioAssay data set |
| NPT397 | Cell line | NCI-H460 | Homo sapiens | GI50 | n.a. | 5407.54 | nM | PubChem BioAssay data set |
| NPT398 | Cell line | UACC-62 | Homo sapiens | GI50 | n.a. | 3491.4 | nM | PubChem BioAssay data set |
| NPT308 | Cell line | CAKI-1 | Homo sapiens | GI50 | n.a. | 13963.68 | nM | PubChem BioAssay data set |
| NPT400 | Cell line | MDA-MB-435 | Homo sapiens | GI50 | n.a. | 15452.54 | nM | PubChem BioAssay data set |
| NPT458 | Cell line | IGROV-1 | Homo sapiens | GI50 | n.a. | 16519.62 | nM | PubChem BioAssay data set |
| NPT399 | Cell line | SF-295 | Homo sapiens | GI50 | n.a. | 3221.07 | nM | PubChem BioAssay data set |
| NPT401 | Cell line | 786-0 | Homo sapiens | GI50 | n.a. | 5382.7 | nM | PubChem BioAssay data set |
| NPT402 | Cell line | Hs-578T | Homo sapiens | GI50 | n.a. | 3515.6 | nM | PubChem BioAssay data set |
| NPT403 | Cell line | UACC-257 | Homo sapiens | GI50 | n.a. | 5420.01 | nM | PubChem BioAssay data set |
| NPT404 | Cell line | CCRF-CEM | Homo sapiens | GI50 | n.a. | 10256.52 | nM | PubChem BioAssay data set |
| NPT170 | Cell line | SK-MEL-28 | Homo sapiens | GI50 | n.a. | 13614.45 | nM | PubChem BioAssay data set |
| NPT407 | Cell line | COLO 205 | Homo sapiens | GI50 | n.a. | 16443.72 | nM | PubChem BioAssay data set |
| NPT146 | Cell line | SK-OV-3 | Homo sapiens | IC50 | = | 3690.0 | nM | PMID[35500202] |
| NPT146 | Cell line | SK-OV-3 | Homo sapiens | IC50 | = | 51550.0 | nM | PMID[35500202] |
| NPT146 | Cell line | SK-OV-3 | Homo sapiens | Activity | > | 25.0 | % | PMID[35500202] |
| NPT146 | Cell line | SK-OV-3 | Homo sapiens | Activity | n.a. | n.a. | n.a. | PMID[35500202] |
| NPT993 | Cell line | Hepatocyte | Mus musculus | Activity | = | 0.1 | % | PMID[29353722] |
| NPT146 | Cell line | SK-OV-3 | Homo sapiens | CI | = | 0.23 | n.a. | PMID[35500202] |
| NPT1122 | Organism | Haemophilus influenzae | Haemophilus influenzae | MIC | = | 18.8 | ug.mL-1 | PMID[31429278] |
| NPT1122 | Organism | Haemophilus influenzae | Haemophilus influenzae | MBC | = | 50.0 | ug ml-1 | PMID[31429278] |
| NPT1122 | Organism | Haemophilus influenzae | Haemophilus influenzae | Ratio | = | 2.7 | n.a. | PMID[31429278] |
| NPT28438 | Unchecked | Unchecked | n.a. | IC50 | = | 20.0 | nM | PMID[34731765] |
| NPT450 | Organism | Meloidogyne incognita | Meloidogyne incognita | EC | = | 2.11 | mM | PMID[28231520] |
| NPT27675 | Cell line | NRK-52E | Rattus norvegicus | EC50 | = | 14.2 | nM | PMID[32141747] |
| NPT24 | Organism | Human immunodeficiency virus 1 | Human immunodeficiency virus 1 | IC50 | = | 48900.0 | nM | PMID[11141100] |
| NPT24 | Organism | Human immunodeficiency virus 1 | Human immunodeficiency virus 1 | IC50 | = | 23.3 | ug.mL-1 | PMID[9748372] |
| NPT20950 | Cell line | Erythrocyte | n.a. | Activity | = | 0.101 | mg/ml | PMID[28094185] |
| NPT20950 | Cell line | Erythrocyte | n.a. | Activity | = | 0.157 | mg/ml | PMID[28094185] |
| Target ID | Target Type | Target Name | Target Organism | Activity Type | Activity Relation | Value | Unit | Reference |
|---|
Experimental ADME
| Experiment Model | Experiment Tissue | ADME Type | ADME Relation | ADME Value | ADME Unit | Reference |
|---|
Experimental Toxicity
| Experiment Model | Experiment Organism | Toxicity Type | Toxicity Relation | Toxicity Value | Toxicity Unit | Reference |
|---|
Common Abbreviations:
LC: Lethal Concentration; LD: Lethal Dose; LT:Lethal Time; NOAEL: No-observed-adverse-effect Level; BMDL: Benchmark Dose Lower Confidence Limit; BMD: Benchmark Dose; BMC:Benchmark Concentration; LOAEL: Lowest Observed Adverse Effect Level; RfD:Reference Dose; RfC:Reference Concentration; MRL: Minimal Risk Level; MEG: Maximum Exposure Guideline; PAC: Protective Action Criteria
| Hepatotoxicity | Carcinogenicity | Mutagenicity | Cardiotoxicity | Respiratory Toxicity | Eye Irritation | Endocrine Disruption |
|---|---|---|---|---|---|---|
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Note for Reference:
In addition to directly collecting NP quantitative data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated NP toxicity records from domain-specific databases. These databases include:
☉ ToxValDB: a curated database that compiles quantitative toxicity values for chemicals from diverse public sources to support toxicological research and risk assessment.
☉ TOXRIC: a comprehensive, free-to-access, online database providing toxicological/feature data. The toxicity labels are retrieved from this database. [PMID: 36400569]
  Chemically structural similarityTop-200 similar NPs were calculated against the active-NP-set (includes approximately 50,000 NPs with experimentally-derived bioactivity available in NPASS)
Similarity is measured using the Tanimoto coefficient (Tc) , which compares the binary fingerprints of two molecules. Tc is calculated as the intersection divided by the union of '1' bits in the fingerprints, ranging from 0 to 1, with 1 indicating highest similarity.
●  The left chart: Distribution of similarity level between NPC158059 and all remaining natural products in the NPASS database.
●  The right table: Most similar natural products (Tc>=0.5 or Top200).
| Similarity Score | Similarity Level | Natural Product ID |
|---|---|---|
| 1.0 | High Similarity | NPC202728 |
| 0.871 | High Similarity | NPC136697 |
| 0.8571 | High Similarity | NPC191412 |
| 0.8571 | High Similarity | NPC114159 |
| 0.8571 | High Similarity | NPC6818 |
| 0.8308 | Intermediate Similarity | NPC187933 |
| 0.8 | Intermediate Similarity | NPC118519 |
| 0.7846 | Intermediate Similarity | NPC259733 |
| 0.7846 | Intermediate Similarity | NPC158371 |
| 0.7846 | Intermediate Similarity | NPC207922 |
| 0.75 | Intermediate Similarity | NPC157113 |
| 0.7463 | Intermediate Similarity | NPC132824 |
| 0.7353 | Intermediate Similarity | NPC137072 |
| 0.7353 | Intermediate Similarity | NPC148964 |
| 0.7324 | Intermediate Similarity | NPC54909 |
| 0.7273 | Intermediate Similarity | NPC51700 |
| 0.7273 | Intermediate Similarity | NPC88716 |
| 0.7273 | Intermediate Similarity | NPC68160 |
| 0.7206 | Intermediate Similarity | NPC247139 |
| 0.7121 | Intermediate Similarity | NPC480946 |
| 0.7121 | Intermediate Similarity | NPC187722 |
| 0.7121 | Intermediate Similarity | NPC130577 |
| 0.7121 | Intermediate Similarity | NPC142415 |
| 0.7121 | Intermediate Similarity | NPC102683 |
| 0.7101 | Intermediate Similarity | NPC62516 |
| 0.7059 | Intermediate Similarity | NPC256247 |
| 0.7059 | Intermediate Similarity | NPC293564 |
| 0.7042 | Intermediate Similarity | NPC603658 |
| 0.7015 | Intermediate Similarity | NPC182797 |
| 0.7015 | Intermediate Similarity | NPC52169 |
| 0.7015 | Intermediate Similarity | NPC488562 |
| 0.6957 | Remote Similarity | NPC35239 |
| 0.6857 | Remote Similarity | NPC118964 |
| 0.6849 | Remote Similarity | NPC96693 |
| 0.6849 | Remote Similarity | NPC233012 |
| 0.6761 | Remote Similarity | NPC284865 |
| 0.6667 | Remote Similarity | NPC235053 |
| 0.6528 | Remote Similarity | NPC116457 |
| 0.6522 | Remote Similarity | NPC606443 |
| 0.6377 | Remote Similarity | NPC274330 |
| 0.6301 | Remote Similarity | NPC147232 |
| 0.6286 | Remote Similarity | NPC171203 |
| 0.6286 | Remote Similarity | NPC307426 |
| 0.6286 | Remote Similarity | NPC98442 |
| 0.6286 | Remote Similarity | NPC242468 |
| 0.6232 | Remote Similarity | NPC477872 |
| 0.6197 | Remote Similarity | NPC61543 |
| 0.6197 | Remote Similarity | NPC293048 |
| 0.6197 | Remote Similarity | NPC225585 |
| 0.6184 | Remote Similarity | NPC327179 |
| 0.6143 | Remote Similarity | NPC198664 |
| 0.6111 | Remote Similarity | NPC228784 |
| 0.6111 | Remote Similarity | NPC324341 |
| 0.6111 | Remote Similarity | NPC601810 |
| 0.6056 | Remote Similarity | NPC7260 |
| 0.6056 | Remote Similarity | NPC270768 |
| 0.6056 | Remote Similarity | NPC59263 |
| 0.6056 | Remote Similarity | NPC210037 |
| 0.6056 | Remote Similarity | NPC210106 |
| 0.6056 | Remote Similarity | NPC229281 |
| 0.6056 | Remote Similarity | NPC120968 |
| 0.6056 | Remote Similarity | NPC121798 |
| 0.6056 | Remote Similarity | NPC234346 |
| 0.6056 | Remote Similarity | NPC227467 |
| 0.6056 | Remote Similarity | NPC273621 |
| 0.5949 | Remote Similarity | NPC600756 |
| 0.589 | Remote Similarity | NPC298554 |
| 0.5833 | Remote Similarity | NPC112866 |
| 0.5753 | Remote Similarity | NPC71074 |
| 0.5753 | Remote Similarity | NPC37221 |
| 0.5753 | Remote Similarity | NPC605937 |
| 0.5733 | Remote Similarity | NPC127689 |
| 0.5733 | Remote Similarity | NPC130520 |
| 0.5694 | Remote Similarity | NPC610937 |
| 0.5667 | Remote Similarity | NPC482049 |
| 0.5667 | Remote Similarity | NPC482050 |
| 0.5658 | Remote Similarity | NPC174663 |
| 0.5625 | Remote Similarity | NPC603645 |
| 0.5618 | Remote Similarity | NPC482052 |
| 0.5616 | Remote Similarity | NPC64872 |
| 0.5616 | Remote Similarity | NPC84319 |
| 0.5616 | Remote Similarity | NPC25906 |
| 0.5616 | Remote Similarity | NPC52021 |
| 0.5616 | Remote Similarity | NPC195019 |
| 0.5616 | Remote Similarity | NPC599947 |
| 0.56 | Remote Similarity | NPC263393 |
| 0.56 | Remote Similarity | NPC60692 |
| 0.5556 | Remote Similarity | NPC25491 |
| 0.5541 | Remote Similarity | NPC18872 |
| 0.5541 | Remote Similarity | NPC290614 |
| 0.5541 | Remote Similarity | NPC472149 |
| 0.5513 | Remote Similarity | NPC474727 |
| 0.5467 | Remote Similarity | NPC29765 |
| 0.5435 | Remote Similarity | NPC482051 |
| 0.5405 | Remote Similarity | NPC275809 |
| 0.5395 | Remote Similarity | NPC9613 |
| 0.5395 | Remote Similarity | NPC610635 |
| 0.5393 | Remote Similarity | NPC488215 |
| 0.5333 | Remote Similarity | NPC88116 |
| 0.5325 | Remote Similarity | NPC25299 |
| 0.5325 | Remote Similarity | NPC481322 |
| 0.5294 | Remote Similarity | NPC290598 |
| 0.5294 | Remote Similarity | NPC27765 |
| 0.5294 | Remote Similarity | NPC30590 |
| 0.5294 | Remote Similarity | NPC122418 |
| 0.5294 | Remote Similarity | NPC491014 |
| 0.5286 | Remote Similarity | NPC311078 |
| 0.5286 | Remote Similarity | NPC101475 |
| 0.5263 | Remote Similarity | NPC173089 |
| 0.5263 | Remote Similarity | NPC87095 |
| 0.5263 | Remote Similarity | NPC32407 |
| 0.5263 | Remote Similarity | NPC263548 |
| 0.5263 | Remote Similarity | NPC606320 |
| 0.5211 | Remote Similarity | NPC235341 |
| 0.5211 | Remote Similarity | NPC253807 |
| 0.5211 | Remote Similarity | NPC158662 |
| 0.5211 | Remote Similarity | NPC291379 |
| 0.52 | Remote Similarity | NPC282616 |
| 0.5195 | Remote Similarity | NPC91010 |
| 0.5155 | Remote Similarity | NPC481234 |
| 0.5155 | Remote Similarity | NPC479431 |
| 0.5139 | Remote Similarity | NPC159168 |
| 0.5135 | Remote Similarity | NPC242631 |
| 0.5132 | Remote Similarity | NPC231063 |
| 0.5132 | Remote Similarity | NPC38754 |
| 0.5132 | Remote Similarity | NPC282395 |
| 0.5132 | Remote Similarity | NPC73489 |
| 0.5132 | Remote Similarity | NPC130278 |
| 0.5132 | Remote Similarity | NPC173744 |
| 0.5132 | Remote Similarity | NPC204961 |
| 0.5132 | Remote Similarity | NPC158141 |
| 0.5132 | Remote Similarity | NPC73004 |
| 0.5132 | Remote Similarity | NPC481360 |
| 0.5132 | Remote Similarity | NPC110308 |
| 0.5132 | Remote Similarity | NPC609452 |
| 0.5072 | Remote Similarity | NPC120098 |
| 0.507 | Remote Similarity | NPC34177 |
| 0.5068 | Remote Similarity | NPC480950 |
| 0.5068 | Remote Similarity | NPC264317 |
| 0.5068 | Remote Similarity | NPC294438 |
| 0.5067 | Remote Similarity | NPC18064 |
| 0.5065 | Remote Similarity | NPC477288 |
| 0.5063 | Remote Similarity | NPC222047 |
| 0.5062 | Remote Similarity | NPC230151 |
Similarity level is defined by Tanimoto coefficient (Tc) between two molecules.
●  The left chart: Distribution of similarity level between NPC158059 and all drugs/candidates.
●  The right table: Most similar clinical/approved drugs (Tc>=0.5 or Top200).
| Similarity Score | Similarity Level | Drug ID | Developmental Stage |
|---|---|---|---|
| 0.5068 | Remote Similarity | NPD7520 | Phase 1 |
  Bioactivity similaritySimilarity level is defined by Bioactivity similarity was calculated based on bioactivity descriptors of compounds. The bioactivity descriptors were calculated by a recently developed AI algorithm Chemical Checker (CC) [Nature Biotechnology, 38:1087–1096, 2020; Nature Communications, 12:3932, 2021], which evaluated bioactivity similarities at five levels:
☉ A: chemistry similarity;
☉ B: biological targets similarity;
☉ C: networks similarity;
☉ D: cell-based bioactivity similarity;
☉ E: similarity based on clinical data.
Those 5 categories of CC bioactivity descriptors were calculated and then subjected to manifold projection using UMAP algorithm, to project all NPs on a 2-Dimensional space. The current NP was highlighted with a small circle in the 2-D map. Below figures: left-to-right, A-to-E.
