Natural Product: NPC158059

Natural Product IDNPC158059
Common Name
?
The InCHIKey will be temporarily assigned as the "Common Name" if no IUPAC name or alternative short name is available.
Pomolic Acid
IUPAC Name (1R,2R,4aS,6aR,6aS,6bR,8aR,10S,12aR,14bS)-1,10-dihydroxy-1,2,6a,6b,9,9,12a-heptamethyl-2,3,4,5,6,6a,7,8,8a,10,11,12,13,14b-tetradecahydropicene-4a-carboxylic acid
Synonyms Pomolic Acid
Synthetic Gene Cluster n.a.
ChEMBL Identifier CHEMBL486986
PubChem CID 382831
Chemical Classification
  • CHEMONTID:0000000 [Organic compounds]
    • [CHEMONTID:0000012] Lipids and lipid-like molecules
      • [CHEMONTID:0000259] Prenol lipids
        • [CHEMONTID:0001553] Triterpenoids

The Chemical Classification was calculated by Classyfire, a software for chemical taxonomy calculation. Reference: DOI:10.1186/s13321-016-0174-y.

  Chemical Representations

Standard InCHIKey ZZTYPLSBNNGEIS-OPAXANQDSA-N
Standard InCHI InChI=1S/C30H48O4/c1-18-10-15-30(24(32)33)17-16-27(5)19(23(30)29(18,7)34)8-9-21-26(4)13-12-22(31)25(2,3)20(26)11-14-28(21,27)6/h8,18,20-23,31,34H,9-17H2,1-7H3,(H,32,33)/t18-,20+,21-,22+,23-,26+,27-,28-,29-,30+/m1/s1
SMILES O[C@H]1CC[C@]2([C@H](C1(C)C)CC[C@@]1([C@@H]2CC=C2[C@@]1(C)CC[C@@]1([C@H]2[C@](C)(O)[C@H](C)CC1)C(=O)O)C)C

  Calculated Properties

Physi-Chem Properties

Molecular Weight:   472.36 Volume:   514.542
?
Van der Waals volume.
Dense:   0.918 LogP:   3.535
?
The logarithm of the n-octanol/water distribution coefficients.
logD7.4:   3.159
?
The logarithm of the n-octanol/water distribution coefficient at pH=7.4.
LogS:   -5.035
?
The logarithm of aqueous solubility value.
Rotatable Bonds:   1.0 Rigid Bonds:   27.0
TPSA:   77.76
?
Topological Polar Surface Area.
H-Bond Acceptor:   4.0
H-Bond Donor:   3.0 Rings:   5.0
Heavy Atoms:   4.0

MedChem Properties

QED Drug-Likeness Score:   0.397 GASA:   1.0
?
GASA represents the probability of being difficult to synthesize, ranging from 0 to 1.
Synthetic Accessibility Score:   4.864 Fsp3:   0.9
MCE-18:   108.07
?
MCE-18 stands for medicinal chemistry evolution.MCE-18≥45 is considered a suitable value.
Lipinski Rule-of-5:   Rejected
Pfizer Rule:   Rejected GSK Rule:   Accepted
Golden Triangle Rule:   Rejected BMS Rule:   0
Chelating Alert:   0 PAINS Alert:   0
Colloidal aggregators:   0.624 Fluc inhibitor:   0.0
?
The fluc inhibitor value is the probability of being fLuc inhibitors, within the range of 0 to 1.
Blue fluorescence:   0.06
?
The blue fluorescence value is the probability of being blue fluorescence, within the range of 0 to 1
Green fluorescence:   0.0
?
The green fluorescence value is the probability of being green fluorescence, within the range of 0 to 1
Reactive compounds:   0.344 Promiscuous compounds:   0.066

ADMET Properties (ADMETlab3.0)

ADMET: Absorption

Caco-2 Permeability:   -5.529 MDCK Permeability:   -5.099
Pgp-inhibitor:   0.0 Pgp-substrate:   0.051
PAMPA:   1.0
?
The experimental data for Peff was logarithmically transformed (logPeff). Molecules with log Peff values below 2.0 were classified as low-permeability (Category 0), while those with log Peff values exceeding 2.5 were classified as high-permeability (Category 1).
Human Intestinal Absorption (HIA):   0.004
20% Bioavailability (F20%):   0.601 30% Bioavailability (F30%):   0.091
50% Bioavailability (F50%):   0.983

ADMET: Distribution

Blood-Brain-Barrier Penetration (BBB):   0.202 MRP1:   0.997
Plasma Protein Binding (PPB):   92.793% Volume Distribution (VD):   -0.463
Fu: 6.895%
?
The fraction unbound in plasms.
OATP1B1 inhibitor:   1.0
OATP1B3 inhibitor:   0.856 BCRP inhibitor:   0.003
BSEP inhibitor:   0.785

ADMET: Metabolism

CYP1A2-inhibitor:   0.003 CYP1A2-substrate:   0.0
CYP2C19-inhibitor:   0.451 CYP2C19-substrate:   0.011
CYP2C9-inhibitor:   0.767 CYP2C9-substrate:   0.0
CYP2D6-inhibitor:   0.0 CYP2D6-substrate:   0.0
CYP3A4-inhibitor:   0.193 CYP3A4-substrate:   0.732
CYP2B6-substrate:   0.0 CYP2C8-inhibitor:   0.242
HLM stability:   0.021
?
Human liver microsomal (HLM) stability. Category 0: stable+ (HLM > 30 min); Category 1: unstable- (HLM ≤ 30 min). The output value is the probability of human liver microsomal instability, where a value closer to 1 indicates a higher likelihood of instability.

ADMET: Excretion

Clearance (CL):  3.906 Half-life (T1/2):  0.91

ADMET: Toxicity

hERG Blockers:  0.025 hERG Blockers (10um):  0.055
Human Hepatotoxicity (H-HT):  0.675 Drug-induced Liver Injury (DILI):  0.481
AMES Toxicity:  0.364 Rat Oral Acute Toxicity:  0.505
Maximum Recommended Daily Dose:  0.551 Skin Sensitization:  0.963
Carcinogencity:  0.93 Eye Corrosion:  0.032
Eye Irritation:  0.639 Respiratory Toxicity:  0.949
Drug-induced Neurotoxicity:  0.113 Ototoxicity:  0.605
Hematotoxicity:  0.401 Drug-induced Nephrotoxicity:  0.95
Genotoxicity:  0.915 RPMI-8226 Immunitoxicity:  0.044
A549 Cytotoxicity:  0.362 Hek293 Cytotoxicity:  0.249
BCF:   0.962
?
Bioconcentration factors are used for considering secondary poisoning potential and assessing risks to human health via the food chain. The unit is -log10[(mg/L)/(1000*MW)].
IGC50:   3.569
?
48 hour Tetrahymena pyriformis IGC50. The unit of IGC50 is -log10[(mg/L)/(1000*MW)].
LC50DM:   5.135
?
48 hour Daphnia magna LC50. The unit of LC50DM is -log10[(mg/L)/(1000*MW)].
LC50FM:   4.446
?
96 hour fathead minnow LC50. The unit of LC50FM is -log10[(mg/L)/(1000*MW)].

  Species Source

Organism ID Organism Name Taxonomy Level Family SuperKingdom Isolation Part Collection Location Collection Time Reference
NPO11144 Centella asiatica Species Apiaceae Eukaryota n.a. n.a. n.a. PMID[ 17560738]
NPO28011 Swertia japonica Species Gentianaceae Eukaryota n.a. n.a. n.a. DOI[10.1007/BF02675902]
NPO11144 Centella asiatica Species Apiaceae Eukaryota n.a. n.a. n.a. DOI[10.1007/s11816-015-0350-y]
NPO22175 Perovskia abrotanoides Species Lamiaceae Eukaryota n.a. n.a. n.a. DOI[10.1016/j.indcrop.2015.01.015]
NPO3595 Euscaphis japonica Species Staphyleaceae Eukaryota n.a. twig n.a. DOI[10.1021/np1003593]
NPO28011 Swertia japonica Species Gentianaceae Eukaryota n.a. n.a. n.a. DOI[10.1055/s-2008-1074888]
NPO28011 Swertia japonica Species Gentianaceae Eukaryota n.a. n.a. n.a. DOI[10.1248/cpb.30.4088]
NPO28011 Swertia japonica Species Gentianaceae Eukaryota n.a. n.a. n.a. PMID[10353265]
NPO20081 Mycobacterium tuberculosis Species Mycobacteriaceae Bacteria n.a. n.a. n.a. PMID[10553679]
NPO22175 Perovskia abrotanoides Species Lamiaceae Eukaryota n.a. n.a. n.a. PMID[11720520]
NPO20081 Mycobacterium tuberculosis Species Mycobacteriaceae Bacteria n.a. n.a. n.a. PMID[12055308]
NPO9096 Scutellaria lateriflora Species Lamiaceae Eukaryota n.a. n.a. n.a. PMID[12713409]
NPO20081 Mycobacterium tuberculosis Species Mycobacteriaceae Bacteria n.a. n.a. n.a. PMID[15070765]
NPO28035 Streptomyces fumanus Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[15730262]
NPO13968 Garcinia scortechinii Species Clusiaceae Eukaryota fruits n.a. n.a. PMID[16038540]
NPO14358 Rhodobacter sphaeroides Species Rhodobacteraceae Bacteria n.a. n.a. n.a. PMID[1612412]
NPO9518 Gardenia jasminoides Species Rubiaceae Eukaryota Fruits n.a. n.a. PMID[16309325]
NPO28391 Euonymus nanoides Species Celastraceae Eukaryota n.a. seed n.a. PMID[16462067]
NPO22364 Weigela subsessilis Species Caprifoliaceae Eukaryota n.a. leaf n.a. PMID[16595930]
NPO22364 Weigela subsessilis Species Caprifoliaceae Eukaryota n.a. stem n.a. PMID[16595930]
NPO9518 Gardenia jasminoides Species Rubiaceae Eukaryota n.a. Seoul, Korea 2000-Jun PMID[16643034]
NPO11144 Centella asiatica Species Apiaceae Eukaryota n.a. aerial part n.a. PMID[17520525]
NPO5158 Cecropia pachystachya Species Urticaceae Eukaryota n.a. leaf n.a. PMID[18260049]
NPO28528 Bridelia ferruginea Species Phyllanthaceae Eukaryota roots Gabon 1987 PMID[18327911]
NPO28528 Bridelia ferruginea Species Phyllanthaceae Eukaryota n.a. n.a. n.a. PMID[18327911]
NPO9518 Gardenia jasminoides Species Rubiaceae Eukaryota fruit n.a. n.a. PMID[18505286]
NPO8068 Blumea mollis Species Asteraceae Eukaryota n.a. leaf n.a. PMID[18566831]
NPO29554 Diospyros kaki Species Ebenaceae Eukaryota leaves n.a. n.a. PMID[18798681]
NPO14162 Chlorophytum borivilianum Species Asparagaceae Eukaryota roots n.a. n.a. PMID[19128156]
NPO20081 Mycobacterium tuberculosis Species Mycobacteriaceae Bacteria n.a. n.a. n.a. PMID[19276083]
NPO9096 Scutellaria lateriflora Species Lamiaceae Eukaryota n.a. n.a. n.a. PMID[19555121]
NPO9096 Scutellaria lateriflora Species Lamiaceae Eukaryota aerial parts n.a. n.a. PMID[19555121]
NPO9518 Gardenia jasminoides Species Rubiaceae Eukaryota fruit n.a. n.a. PMID[19650637]
NPO7016 Gardenia tubifera Species Rubiaceae Eukaryota exudate n.a. n.a. PMID[20028108]
NPO20081 Mycobacterium tuberculosis Species Mycobacteriaceae Bacteria n.a. n.a. n.a. PMID[20448045]
NPO10946 Pseudallescheria boydii Species Microascaceae Eukaryota n.a. n.a. n.a. PMID[20509707]
NPO28217 Septoria pistaciarum Species Mycosphaerellaceae Eukaryota n.a. n.a. n.a. PMID[20550123]
NPO12357 Lycopus europaeus Species Lamiaceae Eukaryota n.a. n.a. n.a. PMID[20674349]
NPO20081 Mycobacterium tuberculosis Species Mycobacteriaceae Bacteria n.a. n.a. n.a. PMID[20843794]
NPO3595 Euscaphis japonica Species Staphyleaceae Eukaryota Twigs Yangming mountain, Taiwan 2008-APR PMID[20873721]
NPO11492 Kopsia grandifolia Species Apocynaceae Eukaryota n.a. stem n.a. PMID[21428274]
NPO11492 Kopsia grandifolia Species Apocynaceae Eukaryota n.a. leaf n.a. PMID[21428274]
NPO20081 Mycobacterium tuberculosis Species Mycobacteriaceae Bacteria n.a. n.a. n.a. PMID[22194604]
NPO8650 Perilla frutescens Species Lamiaceae Eukaryota leaves n.a. n.a. PMID[22272932]
NPO28217 Septoria pistaciarum Species Mycosphaerellaceae Eukaryota n.a. n.a. n.a. PMID[22530813]
NPO11144 Centella asiatica Species Apiaceae Eukaryota n.a. n.a. n.a. PMID[22966846]
NPO9518 Gardenia jasminoides Species Rubiaceae Eukaryota fruits n.a. n.a. PMID[23305920]
NPO10946 Pseudallescheria boydii Species Microascaceae Eukaryota n.a. n.a. n.a. PMID[23964677]
NPO20081 Mycobacterium tuberculosis Species Mycobacteriaceae Bacteria n.a. n.a. n.a. PMID[24516143]
NPO20081 Mycobacterium tuberculosis Species Mycobacteriaceae Bacteria n.a. n.a. n.a. PMID[25028392]
NPO8650 Perilla frutescens Species Lamiaceae Eukaryota n.a. n.a. n.a. PMID[25320841]
NPO9096 Scutellaria lateriflora Species Lamiaceae Eukaryota aerial part n.a. n.a. PMID[25442304]
NPO1795 Fragaria vesca Species Rosaceae Eukaryota n.a. fruit n.a. PMID[26169681]
NPO20081 Mycobacterium tuberculosis Species Mycobacteriaceae Bacteria n.a. n.a. n.a. PMID[26466957]
NPO20081 Mycobacterium tuberculosis Species Mycobacteriaceae Bacteria n.a. n.a. n.a. PMID[26774486]
NPO28528 Bridelia ferruginea Species Phyllanthaceae Eukaryota n.a. n.a. n.a. PMID[26938998]
NPO28011 Swertia japonica Species Gentianaceae Eukaryota n.a. n.a. n.a. PMID[26996316]
NPO20081 Mycobacterium tuberculosis Species Mycobacteriaceae Bacteria n.a. n.a. n.a. PMID[27242221]
NPO20081 Mycobacterium tuberculosis Species Mycobacteriaceae Bacteria n.a. n.a. n.a. PMID[27807341]
NPO13017 Nauclea latifolia Species Rubiaceae Eukaryota n.a. n.a. n.a. PMID[31429278]
NPO9518 Gardenia jasminoides Species Rubiaceae Eukaryota n.a. n.a. n.a. PMID[32141747]
NPO29554 Diospyros kaki Species Ebenaceae Eukaryota Leaves n.a. n.a. PMID[3430165]
NPO22175 Perovskia abrotanoides Species Lamiaceae Eukaryota n.a. n.a. n.a. PMID[37770099]
NPO3595 Euscaphis japonica Species Staphyleaceae Eukaryota n.a. pericarp n.a. PMID[4421158]
NPO28011 Swertia japonica Species Gentianaceae Eukaryota n.a. n.a. n.a. PMID[5583807]
NPO20081 Mycobacterium tuberculosis Species Mycobacteriaceae Bacteria n.a. n.a. n.a. PMID[8917504]
NPO20081 Mycobacterium tuberculosis Species Mycobacteriaceae Bacteria n.a. n.a. n.a. PMID[97292]
NPO9467 Rosa woodsii Species Rosaceae Eukaryota n.a. leaf n.a. PMID[9748372]
NPO16124 Hyptis capitata Species Lamiaceae Eukaryota n.a. whole plant n.a. PMID[9748372]
NPO20081 Mycobacterium tuberculosis Species Mycobacteriaceae Bacteria n.a. n.a. n.a. Database[COCONUT]
NPO8650 Perilla frutescens Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO9518 Gardenia jasminoides Species Rubiaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO14358 Rhodobacter sphaeroides Species Rhodobacteraceae Bacteria n.a. n.a. n.a. Database[COCONUT]
NPO11144 Centella asiatica Species Apiaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO28035 Streptomyces fumanus Species Streptomycetaceae Bacteria n.a. n.a. n.a. Database[COCONUT]
NPO3595 Euscaphis japonica Species Staphyleaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO28011 Swertia japonica Species Gentianaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO25776 Buddleja scordioides Species Scrophulariaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO26254 Fagus crenata Species Fagaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO26412 Streptomyces tauricus Species Streptomycetaceae Bacteria n.a. n.a. n.a. Database[COCONUT]
NPO3465 Aconitum leucostomum Species Ranunculaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO13467 Anarsia lineatella Species Gelechiidae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO14057 Apollonias barbujana Species Lauraceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO4004 Aquilegia ecalcarata Species Ranunculaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO10550 Artemisia hanseniana Species Asteraceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO8068 Blumea mollis Species Asteraceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO13766 Ceanothus velutinus Species Rhamnaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO14162 Chlorophytum borivilianum Species Asparagaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO12509 Dipterocarpus dyeri Species Dipterocarpaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO1795 Fragaria vesca Species Rosaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO13968 Garcinia scortechinii Species Clusiaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO7016 Gardenia tubifera Species Rubiaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO13014 Ipomoea cairica Species Convolvulaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO16703 Isodon lophanthoides Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO11492 Kopsia grandifolia Species Apocynaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO205 Lasianthus fordii Species Rubiaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO11998 Ledebouria socialis Species Hyacinthaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO12357 Lycopus europaeus Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO746 Panax innovans Species Araliaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO5191 Penicillium cinerascens Species Aspergillaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO4671 Persea mexicana Species Lauraceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO8892 Sordaria araneosa Species Sordariaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO13524 Pyrola japonica Species Ericaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO28614 Zieria smithii Species Rutaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO16765 Knoxia valerianoides Species Rubiaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO28696 Rhaponticum uniflorum Species Asteraceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO27959 Codonocarpus australis Species Gyrostemonaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO12450 Cneorum pulverulentum Species Rutaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO28704 Agaricus hortensis Species Agaricaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO9096 Scutellaria lateriflora Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO3287 Hymenoxys scaposa Species Asteraceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO28481 Cerbera dilatata Species Apocynaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO22175 Perovskia abrotanoides Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO28509 Achillea clypeolata Species Asteraceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO16669 Diospyros verrucosa Species Ebenaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO28528 Bridelia ferruginea Species Phyllanthaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO28334 Pyrola decorata Species Ericaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO16124 Hyptis capitata Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO9467 Rosa woodsii Species Rosaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO10946 Pseudallescheria boydii Species Microascaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO28596 Streptomyces lavendofoliae Species Streptomycetaceae Bacteria n.a. n.a. n.a. Database[COCONUT]
NPO28656 Lactobacillus casei Species Lactobacillaceae Bacteria n.a. n.a. n.a. Database[COCONUT]
NPO29554 Diospyros kaki Species Ebenaceae Eukaryota n.a. n.a. Database[FooDB]
NPO8650 Perilla frutescens Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO9518 Gardenia jasminoides Species Rubiaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO13014 Ipomoea cairica Species Convolvulaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO28696 Rhaponticum uniflorum Species Asteraceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO13524 Pyrola japonica Species Ericaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO28011 Swertia japonica Species Gentianaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO3595 Euscaphis japonica Species Staphyleaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO28576 Berberis julianae Species Berberidaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO11144 Centella asiatica Species Apiaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO12357 Lycopus europaeus Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO28334 Pyrola decorata Species Ericaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO1795 Fragaria vesca Species Rosaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO11144 Centella asiatica Species Apiaceae Eukaryota n.a. n.a. n.a. Database[MetaboLights]
NPO9518 Gardenia jasminoides Species Rubiaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO13524 Pyrola japonica Species Ericaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO28696 Rhaponticum uniflorum Species Asteraceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO13014 Ipomoea cairica Species Convolvulaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO11144 Centella asiatica Species Apiaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO12357 Lycopus europaeus Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO8650 Perilla frutescens Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO3595 Euscaphis japonica Species Staphyleaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO3465 Aconitum leucostomum Species Ranunculaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO28011 Swertia japonica Species Gentianaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO16703 Isodon lophanthoides Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO12450 Cneorum pulverulentum Species Rutaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO1795 Fragaria vesca Species Rosaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO28576 Berberis julianae Species Berberidaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO28334 Pyrola decorata Species Ericaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO4004 Aquilegia ecalcarata Species Ranunculaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO13968 Garcinia scortechinii Species Clusiaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO16765 Knoxia valerianoides Species Rubiaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO28576 Berberis julianae Species Berberidaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO9518 Gardenia jasminoides Species Rubiaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO8650 Perilla frutescens Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO13524 Pyrola japonica Species Ericaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO28334 Pyrola decorata Species Ericaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO11144 Centella asiatica Species Apiaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO13014 Ipomoea cairica Species Convolvulaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO28011 Swertia japonica Species Gentianaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO28696 Rhaponticum uniflorum Species Asteraceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO3465 Aconitum leucostomum Species Ranunculaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO16765 Knoxia valerianoides Species Rubiaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO8650 Perilla frutescens Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO9518 Gardenia jasminoides Species Rubiaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO22699 Echinops setifer Species Asteraceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO4163 Echinopsis latifolius Species Cactaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO11144 Centella asiatica Species Apiaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO13524 Pyrola japonica Species Ericaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO28696 Rhaponticum uniflorum Species Asteraceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO28011 Swertia japonica Species Gentianaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO5191 Penicillium cinerascens Species Aspergillaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO8650 Perilla frutescens Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO4671 Persea mexicana Species Lauraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO28509 Achillea clypeolata Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO11492 Kopsia grandifolia Species Apocynaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO13017 Nauclea latifolia Species Rubiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO28161 Stephania sutchuenensis Species Menispermaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO28691 Streptomyces odorifer Species Streptomycetaceae Bacteria n.a. n.a. n.a. Database[UNPD]
NPO27867 Turbo argyrostoma Species Turbinidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO8892 Sordaria araneosa Species Sordariaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO14358 Rhodobacter sphaeroides Species Rhodobacteraceae Bacteria n.a. n.a. n.a. Database[UNPD]
NPO28481 Cerbera dilatata Species Apocynaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO10946 Pseudallescheria boydii Species Microascaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO11441 Barbacenia flava Species Velloziaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO13968 Garcinia scortechinii Species Clusiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO9096 Scutellaria lateriflora Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO13766 Ceanothus velutinus Species Rhamnaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO28576 Berberis julianae Species Berberidaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO20395 Athanasia crithmifolia Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO28053 Quercus serrata Species Fagaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO29353 Benzoin praecox n.a. n.a. n.a. n.a. n.a. n.a. Database[UNPD]
NPO28528 Bridelia ferruginea Species Phyllanthaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO28334 Pyrola decorata Species Ericaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO28391 Euonymus nanoides Species Celastraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO28374 Pleogyne cunninghami Species Menispermaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO4004 Aquilegia ecalcarata Species Ranunculaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO28073 Crateva nurvala Species Capparaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO28200 Unonopsis glaucopetala Species Annonaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO1795 Fragaria vesca Species Rosaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO28217 Septoria pistaciarum Species Mycosphaerellaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO16669 Diospyros verrucosa Species Ebenaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO28704 Agaricus hortensis Species Agaricaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO28131 Polygala amara Species Polygalaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO14057 Apollonias barbujana Species Lauraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO16703 Isodon lophanthoides Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO22175 Perovskia abrotanoides Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO27943 Cardamine pinnata Species Brassicaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO29115 Rhinella arenarum Species Bufonidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO27959 Codonocarpus australis Species Gyrostemonaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO5158 Cecropia pachystachya Species Urticaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO28035 Streptomyces fumanus Species Streptomycetaceae Bacteria n.a. n.a. n.a. Database[UNPD]
NPO11998 Ledebouria socialis Species Hyacinthaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO746 Panax innovans Species Araliaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO12357 Lycopus europaeus Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO28633 Bystropogon origanifolius Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO10550 Artemisia hanseniana Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO3465 Aconitum leucostomum Species Ranunculaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO13467 Anarsia lineatella Species Gelechiidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO11144 Centella asiatica Species Apiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO14162 Chlorophytum borivilianum Species Asparagaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO12509 Dipterocarpus dyeri Species Dipterocarpaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO13014 Ipomoea cairica Species Convolvulaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO6331 Jacobaea subalpina Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO12450 Cneorum pulverulentum Species Rutaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO20081 Mycobacterium tuberculosis Species Mycobacteriaceae Bacteria n.a. n.a. n.a. Database[UNPD]
NPO7016 Gardenia tubifera Species Rubiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO205 Lasianthus fordii Species Rubiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO22364 Weigela subsessilis Species Caprifoliaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO8068 Blumea mollis Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO28656 Lactobacillus casei Species Lactobacillaceae Bacteria n.a. n.a. n.a. Database[UNPD]
NPO28303 Pleogyne cunninghamii Species Menispermaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO9518 Gardenia jasminoides Species Rubiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO28011 Swertia japonica Species Gentianaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO27990 Schizonepeta multifida Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO16124 Hyptis capitata Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO3595 Euscaphis japonica Species Staphyleaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO28614 Zieria smithii Species Rutaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO28596 Streptomyces lavendofoliae Species Streptomycetaceae Bacteria n.a. n.a. n.a. Database[UNPD]
NPO28670 Mortierella elongata Species Mortierellaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO25704 Tetraneuris acaulis Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO28269 Rubus rosa Species Rosaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO26254 Fagus crenata Species Fagaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO25776 Buddleja scordioides Species Scrophulariaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO13524 Pyrola japonica Species Ericaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO26412 Streptomyces tauricus Species Streptomycetaceae Bacteria n.a. n.a. n.a. Database[UNPD]
NPO3287 Hymenoxys scaposa Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO16765 Knoxia valerianoides Species Rubiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO9467 Rosa woodsii Species Rosaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO28696 Rhaponticum uniflorum Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]

Note for Reference:
In addition to directly collecting NP source organism data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated them from below databases:
UNPD: Universal Natural Products Database [PMID: 23638153].
StreptomeDB: a database of streptomycetes natural products [PMID: 33051671].
TM-MC: a database of medicinal materials and chemical compounds in Northeast Asian traditional medicine [PMID: 26156871].
TCM@Taiwan: a Traditional Chinese Medicine database [PMID: 21253603].
TCMID: a Traditional Chinese Medicine database [PMID: 29106634].
TCMSP: The traditional Chinese medicine systems pharmacology database and analysis platform [PMID: 24735618].
HerDing: a herb recommendation system to treat diseases using genes and chemicals [PMID: 26980517].
MetaboLights: a metabolomics database [PMID: 27010336].
FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].



  NP Quantity Composition/Concentration

Organism ID Organism Name Organism Material Preparation Organism Part NP Quantity (Standard) NP Quantity (Minimum) NP Quantity (Maximum) Quantity Unit Reference

Note for Reference:
In addition to directly collecting NP quantitative data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated NP quantitative records for specific NP domains (e.g., NPS from foods or herbs) from domain-specific databases. These databases include:
DUKE: Dr. Duke's Phytochemical and Ethnobotanical Databases.
PHENOL EXPLORER: is the first comprehensive database on polyphenol content in foods [PMID: 24103452], its homepage can be accessed at here.
FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].



 Biological Activity

Molecular-level activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference
NPT178 Individual protein Protein-tyrosine phosphatase 1B Homo sapiens IC50 = 3900.0 nM PMID[18798681]
NPT5212 Individual protein Sentrin-specific protease 1 Homo sapiens Inhibition > 100.0 % PMID[35500202]
NPT5212 Individual protein Sentrin-specific protease 1 Homo sapiens IC50 = 5100.0 nM PMID[35500202]
NPT5212 Individual protein Sentrin-specific protease 1 Homo sapiens Inhibition n.a. n.a. % PMID[35500202]

In vitro activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference
NPT759 Cell line H9 Homo sapiens EC50 = 1.4 ug.mL-1 PMID[9748372]
NPT759 Cell line H9 Homo sapiens EC50 = 3000.0 nM PMID[11141100]
NPT81 Cell line A549 Homo sapiens IC50 = 17220.0 nM PMID[20176479]
NPT146 Cell line SK-OV-3 Homo sapiens IC50 = 13950.0 nM PMID[20176479]
NPT147 Cell line SK-MEL-2 Homo sapiens IC50 = 19160.0 nM PMID[20176479]
NPT148 Cell line HCT-15 Homo sapiens IC50 = 13720.0 nM PMID[20176479]
NPT83 Cell line MCF7 Homo sapiens Activity = 79.0 % PMID[20873721]
NPT397 Cell line NCI-H460 Homo sapiens Activity = 82.0 % PMID[20873721]
NPT139 Cell line HT-29 Homo sapiens Activity = 91.0 % PMID[20873721]
NPT404 Cell line CCRF-CEM Homo sapiens Activity = 92.0 % PMID[20873721]
NPT367 Cell line MDA-N Homo sapiens GI50 n.a. 16330.52 nM PubChem BioAssay data set
NPT368 Cell line SN12C Homo sapiens GI50 n.a. 13645.83 nM PubChem BioAssay data set
NPT370 Cell line NCI-H23 Homo sapiens GI50 n.a. 18706.82 nM PubChem BioAssay data set
NPT369 Cell line ACHN Homo sapiens GI50 n.a. 16519.62 nM PubChem BioAssay data set
NPT371 Cell line UO-31 Homo sapiens GI50 n.a. 11297.96 nM PubChem BioAssay data set
NPT372 Cell line HOP-92 Homo sapiens GI50 n.a. 4446.31 nM PubChem BioAssay data set
NPT116 Cell line HL-60 Homo sapiens GI50 n.a. 4345.1 nM PubChem BioAssay data set
NPT90 Cell line DU-145 Homo sapiens GI50 n.a. 8974.29 nM PubChem BioAssay data set
NPT374 Cell line SF-539 Homo sapiens GI50 n.a. 3250.87 nM PubChem BioAssay data set
NPT375 Cell line Malme-3M Homo sapiens GI50 n.a. 12331.05 nM PubChem BioAssay data set
NPT376 Cell line A498 Homo sapiens GI50 n.a. 18967.06 nM PubChem BioAssay data set
NPT111 Cell line K562 Homo sapiens GI50 n.a. 6486.34 nM PubChem BioAssay data set
NPT377 Cell line OVCAR-3 Homo sapiens GI50 n.a. 18578.04 nM PubChem BioAssay data set
NPT112 Cell line MOLT-4 Homo sapiens GI50 n.a. 4864.07 nM PubChem BioAssay data set
NPT378 Cell line NCI/ADR-RES Homo sapiens GI50 n.a. 15488.17 nM PubChem BioAssay data set
NPT380 Cell line U-251 Homo sapiens GI50 n.a. 14125.38 nM PubChem BioAssay data set
NPT382 Cell line OVCAR-5 Homo sapiens GI50 n.a. 17701.09 nM PubChem BioAssay data set
NPT381 Cell line OVCAR-8 Homo sapiens GI50 n.a. 20183.66 nM PubChem BioAssay data set
NPT383 Cell line SNB-19 Homo sapiens GI50 n.a. 15667.51 nM PubChem BioAssay data set
NPT82 Cell line MDA-MB-231 Homo sapiens GI50 n.a. 8790.23 nM PubChem BioAssay data set
NPT384 Cell line TK-10 Homo sapiens GI50 n.a. 14454.4 nM PubChem BioAssay data set
NPT385 Cell line SR Homo sapiens GI50 n.a. 13867.56 nM PubChem BioAssay data set
NPT323 Cell line SW-620 Homo sapiens GI50 n.a. 21928.05 nM PubChem BioAssay data set
NPT455 Cell line NCI-H522 Homo sapiens GI50 n.a. 13867.56 nM PubChem BioAssay data set
NPT386 Cell line KM12 Homo sapiens GI50 n.a. 12416.52 nM PubChem BioAssay data set
NPT387 Cell line M14 Homo sapiens GI50 n.a. 2978.52 nM PubChem BioAssay data set
NPT389 Cell line RPMI-8226 Homo sapiens GI50 n.a. 16255.49 nM PubChem BioAssay data set
NPT456 Cell line OVCAR-4 Homo sapiens GI50 n.a. 16826.74 nM PubChem BioAssay data set
NPT390 Cell line LOX IMVI Homo sapiens GI50 n.a. 15739.83 nM PubChem BioAssay data set
NPT457 Cell line BT-549 Homo sapiens GI50 n.a. 14387.99 nM PubChem BioAssay data set
NPT147 Cell line SK-MEL-2 Homo sapiens GI50 n.a. 17100.15 nM PubChem BioAssay data set
NPT81 Cell line A549 Homo sapiens GI50 n.a. 17218.69 nM PubChem BioAssay data set
NPT391 Cell line HCC 2998 Homo sapiens GI50 n.a. 14996.85 nM PubChem BioAssay data set
NPT392 Cell line SNB-75 Homo sapiens GI50 n.a. 13489.63 nM PubChem BioAssay data set
NPT148 Cell line HCT-15 Homo sapiens GI50 n.a. 10616.96 nM PubChem BioAssay data set
NPT393 Cell line HCT-116 Homo sapiens GI50 n.a. 12246.16 nM PubChem BioAssay data set
NPT395 Cell line SF-268 Homo sapiens GI50 n.a. 17139.57 nM PubChem BioAssay data set
NPT394 Cell line EKVX Homo sapiens GI50 n.a. 18323.14 nM PubChem BioAssay data set
NPT83 Cell line MCF7 Homo sapiens GI50 n.a. 19952.62 nM PubChem BioAssay data set
NPT146 Cell line SK-OV-3 Homo sapiens GI50 n.a. 17947.34 nM PubChem BioAssay data set
NPT396 Cell line T47D Homo sapiens GI50 n.a. 16368.17 nM PubChem BioAssay data set
NPT397 Cell line NCI-H460 Homo sapiens GI50 n.a. 5407.54 nM PubChem BioAssay data set
NPT398 Cell line UACC-62 Homo sapiens GI50 n.a. 3491.4 nM PubChem BioAssay data set
NPT308 Cell line CAKI-1 Homo sapiens GI50 n.a. 13963.68 nM PubChem BioAssay data set
NPT400 Cell line MDA-MB-435 Homo sapiens GI50 n.a. 15452.54 nM PubChem BioAssay data set
NPT458 Cell line IGROV-1 Homo sapiens GI50 n.a. 16519.62 nM PubChem BioAssay data set
NPT399 Cell line SF-295 Homo sapiens GI50 n.a. 3221.07 nM PubChem BioAssay data set
NPT401 Cell line 786-0 Homo sapiens GI50 n.a. 5382.7 nM PubChem BioAssay data set
NPT402 Cell line Hs-578T Homo sapiens GI50 n.a. 3515.6 nM PubChem BioAssay data set
NPT403 Cell line UACC-257 Homo sapiens GI50 n.a. 5420.01 nM PubChem BioAssay data set
NPT404 Cell line CCRF-CEM Homo sapiens GI50 n.a. 10256.52 nM PubChem BioAssay data set
NPT170 Cell line SK-MEL-28 Homo sapiens GI50 n.a. 13614.45 nM PubChem BioAssay data set
NPT407 Cell line COLO 205 Homo sapiens GI50 n.a. 16443.72 nM PubChem BioAssay data set
NPT146 Cell line SK-OV-3 Homo sapiens IC50 = 3690.0 nM PMID[35500202]
NPT146 Cell line SK-OV-3 Homo sapiens IC50 = 51550.0 nM PMID[35500202]
NPT146 Cell line SK-OV-3 Homo sapiens Activity > 25.0 % PMID[35500202]
NPT146 Cell line SK-OV-3 Homo sapiens Activity n.a. n.a. n.a. PMID[35500202]
NPT993 Cell line Hepatocyte Mus musculus Activity = 0.1 % PMID[29353722]
NPT146 Cell line SK-OV-3 Homo sapiens CI = 0.23 n.a. PMID[35500202]
NPT1122 Organism Haemophilus influenzae Haemophilus influenzae MIC = 18.8 ug.mL-1 PMID[31429278]
NPT1122 Organism Haemophilus influenzae Haemophilus influenzae MBC = 50.0 ug ml-1 PMID[31429278]
NPT1122 Organism Haemophilus influenzae Haemophilus influenzae Ratio = 2.7 n.a. PMID[31429278]
NPT28438 Unchecked Unchecked n.a. IC50 = 20.0 nM PMID[34731765]
NPT450 Organism Meloidogyne incognita Meloidogyne incognita EC = 2.11 mM PMID[28231520]
NPT27675 Cell line NRK-52E Rattus norvegicus EC50 = 14.2 nM PMID[32141747]
NPT24 Organism Human immunodeficiency virus 1 Human immunodeficiency virus 1 IC50 = 48900.0 nM PMID[11141100]
NPT24 Organism Human immunodeficiency virus 1 Human immunodeficiency virus 1 IC50 = 23.3 ug.mL-1 PMID[9748372]
NPT20950 Cell line Erythrocyte n.a. Activity = 0.101 mg/ml PMID[28094185]
NPT20950 Cell line Erythrocyte n.a. Activity = 0.157 mg/ml PMID[28094185]

In vivo activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference





 Experimental ADME

Experiment Model Experiment Tissue ADME Type ADME Relation ADME Value ADME Unit Reference





 Experimental Toxicity

Quantitative toxicity

Experiment Model Experiment Organism Toxicity Type Toxicity Relation Toxicity Value Toxicity Unit Reference

Common Abbreviations:
LC: Lethal Concentration; LD: Lethal Dose; LT:Lethal Time; NOAEL: No-observed-adverse-effect Level; BMDL: Benchmark Dose Lower Confidence Limit; BMD: Benchmark Dose; BMC:Benchmark Concentration; LOAEL: Lowest Observed Adverse Effect Level; RfD:Reference Dose; RfC:Reference Concentration; MRL: Minimal Risk Level; MEG: Maximum Exposure Guideline; PAC: Protective Action Criteria

Categorical toxicity labels

Hepatotoxicity Carcinogenicity Mutagenicity Cardiotoxicity Respiratory Toxicity Eye Irritation Endocrine Disruption
Hepatotoxicity Carcinogenicity Mutagenicity Cardiotoxicity Respiratory Toxicity Eye Irritation Endocrine Disruption

Note for Reference:
In addition to directly collecting NP quantitative data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated NP toxicity records from domain-specific databases. These databases include:
ToxValDB: a curated database that compiles quantitative toxicity values for chemicals from diverse public sources to support toxicological research and risk assessment.
TOXRIC: a comprehensive, free-to-access, online database providing toxicological/feature data. The toxicity labels are retrieved from this database. [PMID: 36400569]


  Chemically structural similarity

Similar Active Natural Products in NPASS

Top-200 similar NPs were calculated against the active-NP-set (includes approximately 50,000 NPs with experimentally-derived bioactivity available in NPASS)

Similarity is measured using the Tanimoto coefficient (Tc) , which compares the binary fingerprints of two molecules. Tc is calculated as the intersection divided by the union of '1' bits in the fingerprints, ranging from 0 to 1, with 1 indicating highest similarity.

●  The left chart: Distribution of similarity level between NPC158059 and all remaining natural products in the NPASS database.
●  The right table: Most similar natural products (Tc>=0.5 or Top200).

Similarity Score Similarity Level Natural Product ID
1.0 High Similarity NPC202728
0.871 High Similarity NPC136697
0.8571 High Similarity NPC191412
0.8571 High Similarity NPC114159
0.8571 High Similarity NPC6818
0.8308 Intermediate Similarity NPC187933
0.8 Intermediate Similarity NPC118519
0.7846 Intermediate Similarity NPC259733
0.7846 Intermediate Similarity NPC158371
0.7846 Intermediate Similarity NPC207922
0.75 Intermediate Similarity NPC157113
0.7463 Intermediate Similarity NPC132824
0.7353 Intermediate Similarity NPC137072
0.7353 Intermediate Similarity NPC148964
0.7324 Intermediate Similarity NPC54909
0.7273 Intermediate Similarity NPC51700
0.7273 Intermediate Similarity NPC88716
0.7273 Intermediate Similarity NPC68160
0.7206 Intermediate Similarity NPC247139
0.7121 Intermediate Similarity NPC480946
0.7121 Intermediate Similarity NPC187722
0.7121 Intermediate Similarity NPC130577
0.7121 Intermediate Similarity NPC142415
0.7121 Intermediate Similarity NPC102683
0.7101 Intermediate Similarity NPC62516
0.7059 Intermediate Similarity NPC256247
0.7059 Intermediate Similarity NPC293564
0.7042 Intermediate Similarity NPC603658
0.7015 Intermediate Similarity NPC182797
0.7015 Intermediate Similarity NPC52169
0.7015 Intermediate Similarity NPC488562
0.6957 Remote Similarity NPC35239
0.6857 Remote Similarity NPC118964
0.6849 Remote Similarity NPC96693
0.6849 Remote Similarity NPC233012
0.6761 Remote Similarity NPC284865
0.6667 Remote Similarity NPC235053
0.6528 Remote Similarity NPC116457
0.6522 Remote Similarity NPC606443
0.6377 Remote Similarity NPC274330
0.6301 Remote Similarity NPC147232
0.6286 Remote Similarity NPC171203
0.6286 Remote Similarity NPC307426
0.6286 Remote Similarity NPC98442
0.6286 Remote Similarity NPC242468
0.6232 Remote Similarity NPC477872
0.6197 Remote Similarity NPC61543
0.6197 Remote Similarity NPC293048
0.6197 Remote Similarity NPC225585
0.6184 Remote Similarity NPC327179
0.6143 Remote Similarity NPC198664
0.6111 Remote Similarity NPC228784
0.6111 Remote Similarity NPC324341
0.6111 Remote Similarity NPC601810
0.6056 Remote Similarity NPC7260
0.6056 Remote Similarity NPC270768
0.6056 Remote Similarity NPC59263
0.6056 Remote Similarity NPC210037
0.6056 Remote Similarity NPC210106
0.6056 Remote Similarity NPC229281
0.6056 Remote Similarity NPC120968
0.6056 Remote Similarity NPC121798
0.6056 Remote Similarity NPC234346
0.6056 Remote Similarity NPC227467
0.6056 Remote Similarity NPC273621
0.5949 Remote Similarity NPC600756
0.589 Remote Similarity NPC298554
0.5833 Remote Similarity NPC112866
0.5753 Remote Similarity NPC71074
0.5753 Remote Similarity NPC37221
0.5753 Remote Similarity NPC605937
0.5733 Remote Similarity NPC127689
0.5733 Remote Similarity NPC130520
0.5694 Remote Similarity NPC610937
0.5667 Remote Similarity NPC482049
0.5667 Remote Similarity NPC482050
0.5658 Remote Similarity NPC174663
0.5625 Remote Similarity NPC603645
0.5618 Remote Similarity NPC482052
0.5616 Remote Similarity NPC64872
0.5616 Remote Similarity NPC84319
0.5616 Remote Similarity NPC25906
0.5616 Remote Similarity NPC52021
0.5616 Remote Similarity NPC195019
0.5616 Remote Similarity NPC599947
0.56 Remote Similarity NPC263393
0.56 Remote Similarity NPC60692
0.5556 Remote Similarity NPC25491
0.5541 Remote Similarity NPC18872
0.5541 Remote Similarity NPC290614
0.5541 Remote Similarity NPC472149
0.5513 Remote Similarity NPC474727
0.5467 Remote Similarity NPC29765
0.5435 Remote Similarity NPC482051
0.5405 Remote Similarity NPC275809
0.5395 Remote Similarity NPC9613
0.5395 Remote Similarity NPC610635
0.5393 Remote Similarity NPC488215
0.5333 Remote Similarity NPC88116
0.5325 Remote Similarity NPC25299
0.5325 Remote Similarity NPC481322
0.5294 Remote Similarity NPC290598
0.5294 Remote Similarity NPC27765
0.5294 Remote Similarity NPC30590
0.5294 Remote Similarity NPC122418
0.5294 Remote Similarity NPC491014
0.5286 Remote Similarity NPC311078
0.5286 Remote Similarity NPC101475
0.5263 Remote Similarity NPC173089
0.5263 Remote Similarity NPC87095
0.5263 Remote Similarity NPC32407
0.5263 Remote Similarity NPC263548
0.5263 Remote Similarity NPC606320
0.5211 Remote Similarity NPC235341
0.5211 Remote Similarity NPC253807
0.5211 Remote Similarity NPC158662
0.5211 Remote Similarity NPC291379
0.52 Remote Similarity NPC282616
0.5195 Remote Similarity NPC91010
0.5155 Remote Similarity NPC481234
0.5155 Remote Similarity NPC479431
0.5139 Remote Similarity NPC159168
0.5135 Remote Similarity NPC242631
0.5132 Remote Similarity NPC231063
0.5132 Remote Similarity NPC38754
0.5132 Remote Similarity NPC282395
0.5132 Remote Similarity NPC73489
0.5132 Remote Similarity NPC130278
0.5132 Remote Similarity NPC173744
0.5132 Remote Similarity NPC204961
0.5132 Remote Similarity NPC158141
0.5132 Remote Similarity NPC73004
0.5132 Remote Similarity NPC481360
0.5132 Remote Similarity NPC110308
0.5132 Remote Similarity NPC609452
0.5072 Remote Similarity NPC120098
0.507 Remote Similarity NPC34177
0.5068 Remote Similarity NPC480950
0.5068 Remote Similarity NPC264317
0.5068 Remote Similarity NPC294438
0.5067 Remote Similarity NPC18064
0.5065 Remote Similarity NPC477288
0.5063 Remote Similarity NPC222047
0.5062 Remote Similarity NPC230151

Similar Clinical/Approved Drugs

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules.

●  The left chart: Distribution of similarity level between NPC158059 and all drugs/candidates.
●  The right table: Most similar clinical/approved drugs (Tc>=0.5 or Top200).

Similarity Score Similarity Level Drug ID Developmental Stage
0.5068 Remote Similarity NPD7520 Phase 1

Bioactivity similarity

  Bioactivity similarity

Similar Natural Products in NPASS

Similarity level is defined by Bioactivity similarity was calculated based on bioactivity descriptors of compounds. The bioactivity descriptors were calculated by a recently developed AI algorithm Chemical Checker (CC) [Nature Biotechnology, 38:1087–1096, 2020; Nature Communications, 12:3932, 2021], which evaluated bioactivity similarities at five levels:
A: chemistry similarity;
B: biological targets similarity;
C: networks similarity;
D: cell-based bioactivity similarity;
E: similarity based on clinical data.
Those 5 categories of CC bioactivity descriptors were calculated and then subjected to manifold projection using UMAP algorithm, to project all NPs on a 2-Dimensional space. The current NP was highlighted with a small circle in the 2-D map. Below figures: left-to-right, A-to-E.

A: chemistry similarity
B: biological targets similarity
C: networks similarity
D: cell-based bioactivity similarity
E: similarity based on clinical data