Structure

Physi-Chem Properties

Molecular Weight:  458.34
Volume:  497.246
LogP:  5.183
LogD:  3.937
LogS:  -3.531
# Rotatable Bonds:  1
TPSA:  77.76
# H-Bond Aceptor:  4
# H-Bond Donor:  3
# Rings:  5
# Heavy Atoms:  4

MedChem Properties

QED Drug-Likeness Score:  0.424
Synthetic Accessibility Score:  4.77
Fsp3:  0.897
Lipinski Rule-of-5:  Accepted
Pfizer Rule:  Accepted
GSK Rule:  Rejected
BMS Rule:  0
Golden Triangle Rule:  Accepted
Chelating Alert:  0
PAINS Alert:  0

ADMET Properties (ADMETlab2.0)

ADMET: Absorption

Caco-2 Permeability:  -5.337
MDCK Permeability:  1.4635053048550617e-05
Pgp-inhibitor:  0.024
Pgp-substrate:  0.001
Human Intestinal Absorption (HIA):  0.009
20% Bioavailability (F20%):  0.059
30% Bioavailability (F30%):  0.826

ADMET: Distribution

Blood-Brain-Barrier Penetration (BBB):  0.584
Plasma Protein Binding (PPB):  94.92499542236328%
Volume Distribution (VD):  0.745
Pgp-substrate:  4.913923740386963%

ADMET: Metabolism

CYP1A2-inhibitor:  0.009
CYP1A2-substrate:  0.395
CYP2C19-inhibitor:  0.014
CYP2C19-substrate:  0.798
CYP2C9-inhibitor:  0.109
CYP2C9-substrate:  0.391
CYP2D6-inhibitor:  0.006
CYP2D6-substrate:  0.138
CYP3A4-inhibitor:  0.298
CYP3A4-substrate:  0.161

ADMET: Excretion

Clearance (CL):  2.971
Half-life (T1/2):  0.075

ADMET: Toxicity

hERG Blockers:  0.012
Human Hepatotoxicity (H-HT):  0.55
Drug-inuced Liver Injury (DILI):  0.011
AMES Toxicity:  0.005
Rat Oral Acute Toxicity:  0.284
Maximum Recommended Daily Dose:  0.78
Skin Sensitization:  0.053
Carcinogencity:  0.272
Eye Corrosion:  0.037
Eye Irritation:  0.027
Respiratory Toxicity:  0.98

Download Data

Data Type Select
General Info & Identifiers & Properties  
Structure MOL file  
Source Organisms  
Biological Activities  
Similar NPs/Drugs  

  Natural Product: NPC275809

Natural Product ID:  NPC275809
Common Name*:   Gypsogenin
IUPAC Name:   (4aS,6aS,6bR,8aR,9S,10S,12aR,14bS)-9,10-dihydroxy-2,2,6a,6b,9,12a-hexamethyl-1,3,4,5,6,6a,7,8,8a,10,11,12,13,14b-tetradecahydropicene-4a-carboxylic acid
Synonyms:   Gypsogenin
Standard InCHIKey:  BUOYQGLRFDDTLB-KBIKRTHESA-N
Standard InCHI:  InChI=1S/C29H46O4/c1-24(2)13-15-29(23(31)32)16-14-26(4)18(19(29)17-24)7-8-20-25(3)11-10-22(30)28(6,33)21(25)9-12-27(20,26)5/h7,19-22,30,33H,8-17H2,1-6H3,(H,31,32)/t19-,20?,21+,22-,25+,26+,27+,28-,29-/m0/s1
SMILES:  CC1(C)CC[C@@]2(CC[C@]3(C)C(=CCC4[C@@]5(C)CC[C@@H]([C@](C)([C@@H]5CC[C@@]34C)O)O)[C@@H]2C1)C(=O)O
Synthetic Gene Cluster:   n.a.
ChEMBL Identifier:   CHEMBL261695
PubChem CID:   44451366
Chemical Classification**:  
  • CHEMONTID:0000000 [Organic compounds]
    • [CHEMONTID:0000012] Lipids and lipid-like molecules
      • [CHEMONTID:0000259] Prenol lipids
        • [CHEMONTID:0001553] Triterpenoids

*Note: the InCHIKey will be temporarily assigned as the "Common Name" if no IUPAC name or alternative short name is available.
**Note: the Chemical Classification was calculated by NPClassifier Version 1.5. Reference: PMID:34662515.

  Species Source

Organism ID Organism Name Taxonomy Level Family SuperKingdom Isolation Part Collection Location Collection Time Reference
NPO23323 Dianthus superbus Species Caryophyllaceae Eukaryota n.a. n.a. n.a. PMID[15387653]
NPO11597.1 Stellaria dichotoma var. lanceolata Under-species Caryophyllaceae Eukaryota n.a. root n.a. PMID[15467234]
NPO25660 Gypsophila oldhamiana Species Caryophyllaceae Eukaryota n.a. root n.a. PMID[16880670]
NPO25660 Gypsophila oldhamiana Species Caryophyllaceae Eukaryota n.a. root n.a. PMID[17409564]
NPO25660 Gypsophila oldhamiana Species Caryophyllaceae Eukaryota roots n.a. n.a. PMID[18194870]
NPO12934 Gynostemma pentaphyllum Species Cucurbitaceae Eukaryota Stems n.a. n.a. PMID[20104880]
NPO11597.1 Stellaria dichotoma var. lanceolata Under-species Caryophyllaceae Eukaryota roots n.a. n.a. PMID[21090796]
NPO11597.1 Stellaria dichotoma var. lanceolata Under-species Caryophyllaceae Eukaryota n.a. root n.a. PMID[21090796]
NPO23323 Dianthus superbus Species Caryophyllaceae Eukaryota n.a. n.a. n.a. PMID[22325941]
NPO12934 Gynostemma pentaphyllum Species Cucurbitaceae Eukaryota n.a. n.a. n.a. PMID[22342101]
NPO12934 Gynostemma pentaphyllum Species Cucurbitaceae Eukaryota aerial parts n.a. n.a. PMID[25895106]
NPO28836 Gypsophila pacifica Species Caryophyllaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO23323 Dianthus superbus Species Caryophyllaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO13052 Agrostemma githago Species Caryophyllaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO12934 Gynostemma pentaphyllum Species Cucurbitaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO11597.1 Stellaria dichotoma var. lanceolata Under-species Caryophyllaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO11597.1 Stellaria dichotoma var. lanceolata Under-species Caryophyllaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO13052 Agrostemma githago Species Caryophyllaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO23323 Dianthus superbus Species Caryophyllaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO12934 Gynostemma pentaphyllum Species Cucurbitaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO28836 Gypsophila pacifica Species Caryophyllaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO12934 Gynostemma pentaphyllum Species Cucurbitaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO23323 Dianthus superbus Species Caryophyllaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO25660 Gypsophila oldhamiana Species Caryophyllaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO23323 Dianthus superbus Species Caryophyllaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO23323 Dianthus superbus Species Caryophyllaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO13052 Agrostemma githago Species Caryophyllaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO25660 Gypsophila oldhamiana Species Caryophyllaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO12934 Gynostemma pentaphyllum Species Cucurbitaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO28836 Gypsophila pacifica Species Caryophyllaceae Eukaryota n.a. n.a. n.a. Database[UNPD]

☑ Note for Reference:
In addition to directly collecting NP source organism data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated them from below databases:
☉ UNPD: Universal Natural Products Database [PMID: 23638153].
☉ StreptomeDB: a database of streptomycetes natural products [PMID: 33051671].
☉ TM-MC: a database of medicinal materials and chemical compounds in Northeast Asian traditional medicine [PMID: 26156871].
☉ TCM@Taiwan: a Traditional Chinese Medicine database [PMID: 21253603].
☉ TCMID: a Traditional Chinese Medicine database [PMID: 29106634].
☉ TCMSP: The traditional Chinese medicine systems pharmacology database and analysis platform [PMID: 24735618].
☉ HerDing: a herb recommendation system to treat diseases using genes and chemicals [PMID: 26980517].
☉ MetaboLights: a metabolomics database [PMID: 27010336].
☉ FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].

  NP Quantity Composition/Concentration

Organism ID NP ID Organism Material Preparation Organism Part NP Quantity (Standard) NP Quantity (Minimum) NP Quantity (Maximum) Quantity Unit Reference

☑ Note for Reference:
In addition to directly collecting NP quantitative data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated NP quantitative records for specific NP domains (e.g., NPS from foods or herbs) from domain-specific databases. These databases include:
☉ DUKE: Dr. Duke's Phytochemical and Ethnobotanical Databases.
☉ PHENOL EXPLORER: is the first comprehensive database on polyphenol content in foods [PMID: 24103452], its homepage can be accessed at here.
☉ FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].

  Biological Activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference
NPT2 Others Unspecified IC50 = 85200.0 nM PMID[519490]

☑ Note for Activity Records:
☉ The quantitative biological activities were primarily integrated from ChEMBL (Version-30) database and were also directly collected from PubMed literature. PubMed PMID was provided as the reference link for each activity record.

  Chemically structural similarity: I. Similar Active Natural Products in NPASS

Top-200 similar NPs were calculated against the active-NP-set (includes 4,3285 NPs with experimentally-derived bioactivity available in NPASS)

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules. Tc lies between [0, 1] where '1' indicates the highest similarity. What is Tanimoto coefficient

●  The left chart: Distribution of similarity level between NPC275809 and all remaining natural products in the NPASS database.
●  The right table: Most similar natural products (Tc>=0.56 or Top200).

Similarity Score Similarity Level Natural Product ID
0.9884 High Similarity NPC300351
0.9884 High Similarity NPC235884
0.9884 High Similarity NPC71074
0.9884 High Similarity NPC25299
0.9884 High Similarity NPC52021
0.9884 High Similarity NPC84319
0.9884 High Similarity NPC472149
0.9884 High Similarity NPC306541
0.977 High Similarity NPC136313
0.977 High Similarity NPC307335
0.977 High Similarity NPC74855
0.9767 High Similarity NPC49320
0.9663 High Similarity NPC158371
0.9663 High Similarity NPC207922
0.9663 High Similarity NPC259733
0.9659 High Similarity NPC231063
0.9659 High Similarity NPC88116
0.9659 High Similarity NPC263548
0.9659 High Similarity NPC20235
0.9659 High Similarity NPC145667
0.9659 High Similarity NPC299996
0.9659 High Similarity NPC282395
0.9659 High Similarity NPC32407
0.9556 High Similarity NPC259788
0.9556 High Similarity NPC247139
0.9556 High Similarity NPC255589
0.9556 High Similarity NPC9613
0.9551 High Similarity NPC198245
0.9551 High Similarity NPC96916
0.9545 High Similarity NPC474806
0.9545 High Similarity NPC133579
0.9535 High Similarity NPC182797
0.9535 High Similarity NPC52169
0.9444 High Similarity NPC173744
0.9444 High Similarity NPC201657
0.9444 High Similarity NPC25848
0.9444 High Similarity NPC19376
0.9444 High Similarity NPC307282
0.9444 High Similarity NPC73004
0.9444 High Similarity NPC204961
0.9444 High Similarity NPC305464
0.9444 High Similarity NPC230151
0.9438 High Similarity NPC188102
0.9438 High Similarity NPC87095
0.9425 High Similarity NPC127689
0.9425 High Similarity NPC293048
0.9425 High Similarity NPC130520
0.9425 High Similarity NPC274330
0.9425 High Similarity NPC25906
0.9425 High Similarity NPC234346
0.9425 High Similarity NPC143232
0.9425 High Similarity NPC290972
0.9425 High Similarity NPC64872
0.9425 High Similarity NPC121798
0.9425 High Similarity NPC263393
0.9425 High Similarity NPC270768
0.9425 High Similarity NPC198664
0.9425 High Similarity NPC225585
0.9425 High Similarity NPC61543
0.9425 High Similarity NPC59263
0.9419 High Similarity NPC68160
0.9419 High Similarity NPC242468
0.9419 High Similarity NPC51700
0.9419 High Similarity NPC88716
0.9419 High Similarity NPC307426
0.9419 High Similarity NPC98442
0.9419 High Similarity NPC102683
0.9419 High Similarity NPC130577
0.9419 High Similarity NPC171203
0.9419 High Similarity NPC293564
0.9419 High Similarity NPC18064
0.9419 High Similarity NPC142415
0.9348 High Similarity NPC35239
0.9341 High Similarity NPC203343
0.9341 High Similarity NPC261935
0.9341 High Similarity NPC312075
0.9341 High Similarity NPC43686
0.9341 High Similarity NPC106112
0.9333 High Similarity NPC32118
0.9326 High Similarity NPC202728
0.9326 High Similarity NPC158059
0.9326 High Similarity NPC118519
0.9318 High Similarity NPC227467
0.9318 High Similarity NPC210037
0.9318 High Similarity NPC290614
0.9318 High Similarity NPC291028
0.9318 High Similarity NPC477872
0.9318 High Similarity NPC126369
0.9318 High Similarity NPC7260
0.9318 High Similarity NPC18872
0.9318 High Similarity NPC120968
0.9318 High Similarity NPC273621
0.9318 High Similarity NPC470589
0.9318 High Similarity NPC130278
0.9318 High Similarity NPC111110
0.931 High Similarity NPC474512
0.931 High Similarity NPC473242
0.931 High Similarity NPC17733
0.931 High Similarity NPC246708
0.931 High Similarity NPC40552
0.931 High Similarity NPC290690
0.931 High Similarity NPC470629
0.931 High Similarity NPC181225
0.9302 High Similarity NPC72638
0.9247 High Similarity NPC233012
0.9247 High Similarity NPC256247
0.9247 High Similarity NPC54909
0.9239 High Similarity NPC29765
0.9239 High Similarity NPC188833
0.9239 High Similarity NPC271614
0.9239 High Similarity NPC111214
0.9222 High Similarity NPC114159
0.9222 High Similarity NPC6818
0.9222 High Similarity NPC191412
0.9222 High Similarity NPC296164
0.9213 High Similarity NPC324341
0.9213 High Similarity NPC105189
0.9213 High Similarity NPC155120
0.9213 High Similarity NPC966
0.9213 High Similarity NPC145067
0.9213 High Similarity NPC233455
0.9213 High Similarity NPC282616
0.9213 High Similarity NPC288833
0.9213 High Similarity NPC158030
0.9213 High Similarity NPC187722
0.9213 High Similarity NPC4036
0.9213 High Similarity NPC65120
0.9213 High Similarity NPC228784
0.9213 High Similarity NPC474525
0.9205 High Similarity NPC474972
0.9205 High Similarity NPC95246
0.9205 High Similarity NPC161751
0.9205 High Similarity NPC470588
0.9111 High Similarity NPC298554
0.9111 High Similarity NPC214756
0.9111 High Similarity NPC272075
0.9111 High Similarity NPC118490
0.9111 High Similarity NPC295643
0.9111 High Similarity NPC229281
0.9111 High Similarity NPC86368
0.9101 High Similarity NPC120840
0.9101 High Similarity NPC113989
0.9101 High Similarity NPC46441
0.9101 High Similarity NPC193750
0.9101 High Similarity NPC86372
0.9101 High Similarity NPC474728
0.9101 High Similarity NPC172361
0.908 High Similarity NPC73038
0.908 High Similarity NPC324063
0.9022 High Similarity NPC62516
0.9022 High Similarity NPC132824
0.9022 High Similarity NPC327179
0.9022 High Similarity NPC116457
0.9022 High Similarity NPC157113
0.9022 High Similarity NPC88847
0.9011 High Similarity NPC222047
0.9011 High Similarity NPC91010
0.9011 High Similarity NPC60692
0.9011 High Similarity NPC209868
0.9011 High Similarity NPC159365
0.9011 High Similarity NPC474529
0.9 High Similarity NPC285184
0.9 High Similarity NPC60755
0.9 High Similarity NPC189520
0.9 High Similarity NPC471588
0.9 High Similarity NPC38754
0.9 High Similarity NPC77099
0.9 High Similarity NPC470590
0.9 High Similarity NPC475708
0.9 High Similarity NPC6255
0.8989 High Similarity NPC30522
0.8989 High Similarity NPC474686
0.8977 High Similarity NPC71507
0.8966 High Similarity NPC133954
0.8958 High Similarity NPC284865
0.8925 High Similarity NPC187933
0.8913 High Similarity NPC473240
0.8913 High Similarity NPC474727
0.8913 High Similarity NPC139570
0.8913 High Similarity NPC83693
0.8913 High Similarity NPC53565
0.8913 High Similarity NPC290481
0.8913 High Similarity NPC148523
0.8901 High Similarity NPC63118
0.8901 High Similarity NPC474436
0.8901 High Similarity NPC49776
0.8866 High Similarity NPC477877
0.8864 High Similarity NPC74363
0.8864 High Similarity NPC477579
0.8864 High Similarity NPC475862
0.8864 High Similarity NPC235341
0.8864 High Similarity NPC213412
0.8864 High Similarity NPC95594
0.8851 High Similarity NPC171789
0.883 High Similarity NPC174663
0.8817 High Similarity NPC476327
0.8817 High Similarity NPC98874
0.8817 High Similarity NPC476318
0.8804 High Similarity NPC215700
0.8804 High Similarity NPC80365

  Chemically structural similarity: II. Similar Clinical/Approved Drugs

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules.

●  The left chart: Distribution of similarity level between NPC275809 and all drugs/candidates.
●  The right table: Most similar clinical/approved drugs (Tc>=0.56 or Top200).

Similarity Score Similarity Level Drug ID Developmental Stage
0.9213 High Similarity NPD7515 Phase 2
0.8804 High Similarity NPD7748 Approved
0.8526 High Similarity NPD7902 Approved
0.8333 Intermediate Similarity NPD7520 Clinical (unspecified phase)
0.8211 Intermediate Similarity NPD7900 Approved
0.8211 Intermediate Similarity NPD7901 Clinical (unspecified phase)
0.8068 Intermediate Similarity NPD7645 Phase 2
0.7849 Intermediate Similarity NPD3618 Phase 1
0.7826 Intermediate Similarity NPD4786 Approved
0.7812 Intermediate Similarity NPD8034 Phase 2
0.7812 Intermediate Similarity NPD8035 Phase 2
0.7802 Intermediate Similarity NPD3667 Approved
0.7789 Intermediate Similarity NPD5328 Approved
0.7732 Intermediate Similarity NPD6399 Phase 3
0.7629 Intermediate Similarity NPD6079 Approved
0.7604 Intermediate Similarity NPD7285 Clinical (unspecified phase)
0.7596 Intermediate Similarity NPD5739 Approved
0.7596 Intermediate Similarity NPD6675 Approved
0.7596 Intermediate Similarity NPD6402 Approved
0.7596 Intermediate Similarity NPD7128 Approved
0.7582 Intermediate Similarity NPD7525 Registered
0.7551 Intermediate Similarity NPD4202 Approved
0.7547 Intermediate Similarity NPD8132 Clinical (unspecified phase)
0.7525 Intermediate Similarity NPD7638 Approved
0.75 Intermediate Similarity NPD7513 Clinical (unspecified phase)
0.7453 Intermediate Similarity NPD7320 Approved
0.7453 Intermediate Similarity NPD6899 Approved
0.7453 Intermediate Similarity NPD6881 Approved
0.7451 Intermediate Similarity NPD7639 Approved
0.7451 Intermediate Similarity NPD7640 Approved
0.7447 Intermediate Similarity NPD3665 Phase 1
0.7447 Intermediate Similarity NPD3666 Approved
0.7447 Intermediate Similarity NPD3133 Approved
0.7426 Intermediate Similarity NPD6083 Phase 2
0.7426 Intermediate Similarity NPD4755 Approved
0.7426 Intermediate Similarity NPD6084 Phase 2
0.7396 Intermediate Similarity NPD3573 Approved
0.7387 Intermediate Similarity NPD7115 Discovery
0.7383 Intermediate Similarity NPD6373 Approved
0.7383 Intermediate Similarity NPD6372 Approved
0.7358 Intermediate Similarity NPD5697 Approved
0.7358 Intermediate Similarity NPD5701 Approved
0.7339 Intermediate Similarity NPD8297 Approved
0.7333 Intermediate Similarity NPD6117 Approved
0.7327 Intermediate Similarity NPD5222 Approved
0.7327 Intermediate Similarity NPD5221 Approved
0.7327 Intermediate Similarity NPD4697 Phase 3
0.7327 Intermediate Similarity NPD5220 Clinical (unspecified phase)
0.7315 Intermediate Similarity NPD6883 Approved
0.7315 Intermediate Similarity NPD7102 Approved
0.7315 Intermediate Similarity NPD7290 Approved
0.7304 Intermediate Similarity NPD8328 Phase 3
0.7292 Intermediate Similarity NPD6684 Approved
0.7292 Intermediate Similarity NPD7146 Approved
0.7292 Intermediate Similarity NPD6409 Approved
0.7292 Intermediate Similarity NPD5330 Approved
0.7292 Intermediate Similarity NPD7521 Approved
0.7292 Intermediate Similarity NPD7334 Approved
0.729 Intermediate Similarity NPD6011 Approved
0.7282 Intermediate Similarity NPD4700 Approved
0.7282 Intermediate Similarity NPD4696 Approved
0.7282 Intermediate Similarity NPD5285 Approved
0.7282 Intermediate Similarity NPD5286 Approved
0.7273 Intermediate Similarity NPD4632 Approved
0.7273 Intermediate Similarity NPD6411 Approved
0.7263 Intermediate Similarity NPD3668 Phase 3
0.7255 Intermediate Similarity NPD5173 Approved
0.7253 Intermediate Similarity NPD6116 Phase 1
0.7248 Intermediate Similarity NPD6649 Approved
0.7248 Intermediate Similarity NPD8130 Phase 1
0.7248 Intermediate Similarity NPD6847 Approved
0.7248 Intermediate Similarity NPD6617 Approved
0.7248 Intermediate Similarity NPD6401 Clinical (unspecified phase)
0.7248 Intermediate Similarity NPD6650 Approved
0.7248 Intermediate Similarity NPD6869 Approved
0.7245 Intermediate Similarity NPD4753 Phase 2
0.7232 Intermediate Similarity NPD8295 Clinical (unspecified phase)
0.7222 Intermediate Similarity NPD6012 Approved
0.7222 Intermediate Similarity NPD6014 Approved
0.7222 Intermediate Similarity NPD6013 Approved
0.7222 Intermediate Similarity NPD4061 Clinical (unspecified phase)
0.7212 Intermediate Similarity NPD5223 Approved
0.7182 Intermediate Similarity NPD6882 Approved
0.7174 Intermediate Similarity NPD6118 Approved
0.7174 Intermediate Similarity NPD6115 Approved
0.7174 Intermediate Similarity NPD6114 Approved
0.7174 Intermediate Similarity NPD6697 Approved
0.7157 Intermediate Similarity NPD7614 Phase 1
0.7143 Intermediate Similarity NPD5224 Approved
0.7143 Intermediate Similarity NPD5211 Phase 2
0.7143 Intermediate Similarity NPD6903 Approved
0.7143 Intermediate Similarity NPD5225 Approved
0.7143 Intermediate Similarity NPD6672 Approved
0.7143 Intermediate Similarity NPD5226 Approved
0.7143 Intermediate Similarity NPD5737 Approved
0.7143 Intermediate Similarity NPD4633 Approved
0.7113 Intermediate Similarity NPD3574 Clinical (unspecified phase)
0.7111 Intermediate Similarity NPD6113 Clinical (unspecified phase)
0.7075 Intermediate Similarity NPD5174 Approved
0.7075 Intermediate Similarity NPD4754 Approved
0.7075 Intermediate Similarity NPD5175 Approved
0.7071 Intermediate Similarity NPD6101 Approved
0.7071 Intermediate Similarity NPD5764 Clinical (unspecified phase)
0.7059 Intermediate Similarity NPD6356 Clinical (unspecified phase)
0.7059 Intermediate Similarity NPD5695 Phase 3
0.7053 Intermediate Similarity NPD4221 Approved
0.7053 Intermediate Similarity NPD4223 Phase 3
0.7037 Intermediate Similarity NPD6412 Phase 2
0.7033 Intermediate Similarity NPD6942 Approved
0.7033 Intermediate Similarity NPD7339 Approved
0.7021 Intermediate Similarity NPD4695 Discontinued
0.7019 Intermediate Similarity NPD5696 Approved
0.7019 Intermediate Similarity NPD4225 Approved
0.701 Intermediate Similarity NPD5329 Approved
0.7009 Intermediate Similarity NPD5141 Approved
0.7 Intermediate Similarity NPD4634 Approved
0.6979 Remote Similarity NPD4788 Approved
0.6972 Remote Similarity NPD5345 Clinical (unspecified phase)
0.6964 Remote Similarity NPD8133 Approved
0.6957 Remote Similarity NPD3701 Clinical (unspecified phase)
0.6944 Remote Similarity NPD4767 Approved
0.6944 Remote Similarity NPD4768 Approved
0.6939 Remote Similarity NPD5279 Phase 3
0.6939 Remote Similarity NPD6098 Approved
0.6931 Remote Similarity NPD5281 Approved
0.6931 Remote Similarity NPD5284 Approved
0.693 Remote Similarity NPD6009 Approved
0.6907 Remote Similarity NPD4197 Approved
0.69 Remote Similarity NPD6673 Approved
0.69 Remote Similarity NPD6080 Approved
0.69 Remote Similarity NPD6904 Approved
0.6897 Remote Similarity NPD6319 Approved
0.6893 Remote Similarity NPD5210 Approved
0.6893 Remote Similarity NPD4629 Approved
0.6891 Remote Similarity NPD7507 Approved
0.687 Remote Similarity NPD6335 Approved
0.6847 Remote Similarity NPD5955 Clinical (unspecified phase)
0.6842 Remote Similarity NPD6868 Approved
0.6842 Remote Similarity NPD6274 Approved
0.6827 Remote Similarity NPD7732 Phase 3
0.6822 Remote Similarity NPD7632 Discontinued
0.6818 Remote Similarity NPD4730 Approved
0.6818 Remote Similarity NPD5128 Approved
0.6818 Remote Similarity NPD6686 Approved
0.6818 Remote Similarity NPD4729 Approved
0.681 Remote Similarity NPD7101 Approved
0.681 Remote Similarity NPD7100 Approved
0.6789 Remote Similarity NPD6008 Approved
0.6783 Remote Similarity NPD6317 Approved
0.6777 Remote Similarity NPD7736 Approved
0.6774 Remote Similarity NPD6933 Approved
0.6768 Remote Similarity NPD4623 Approved
0.6768 Remote Similarity NPD4690 Approved
0.6768 Remote Similarity NPD4519 Discontinued
0.6768 Remote Similarity NPD4689 Approved
0.6768 Remote Similarity NPD5205 Approved
0.6768 Remote Similarity NPD4138 Approved
0.6768 Remote Similarity NPD4693 Phase 3
0.6768 Remote Similarity NPD4688 Approved
0.6724 Remote Similarity NPD6313 Approved
0.6724 Remote Similarity NPD6314 Approved
0.6723 Remote Similarity NPD7604 Phase 2
0.6721 Remote Similarity NPD7319 Approved
0.6703 Remote Similarity NPD4808 Clinical (unspecified phase)
0.6703 Remote Similarity NPD4809 Clinical (unspecified phase)
0.6701 Remote Similarity NPD4752 Clinical (unspecified phase)
0.6699 Remote Similarity NPD5779 Approved
0.6699 Remote Similarity NPD5778 Approved
0.6696 Remote Similarity NPD5251 Approved
0.6696 Remote Similarity NPD5248 Approved
0.6696 Remote Similarity NPD5247 Approved
0.6696 Remote Similarity NPD5250 Approved
0.6696 Remote Similarity NPD5134 Clinical (unspecified phase)
0.6696 Remote Similarity NPD5249 Phase 3
0.6696 Remote Similarity NPD5135 Approved
0.6696 Remote Similarity NPD5169 Approved
0.6695 Remote Similarity NPD6909 Approved
0.6695 Remote Similarity NPD6908 Approved
0.6695 Remote Similarity NPD5983 Phase 2
0.6667 Remote Similarity NPD3700 Clinical (unspecified phase)
0.6667 Remote Similarity NPD7516 Approved
0.6667 Remote Similarity NPD7492 Approved
0.6667 Remote Similarity NPD3699 Clinical (unspecified phase)
0.6667 Remote Similarity NPD5168 Approved
0.6637 Remote Similarity NPD5216 Approved
0.6637 Remote Similarity NPD5217 Approved
0.6637 Remote Similarity NPD5215 Approved
0.6637 Remote Similarity NPD5127 Approved
0.6635 Remote Similarity NPD6001 Approved
0.6634 Remote Similarity NPD5208 Approved
0.6632 Remote Similarity NPD3617 Approved
0.6632 Remote Similarity NPD5784 Clinical (unspecified phase)
0.6612 Remote Similarity NPD6336 Discontinued
0.6612 Remote Similarity NPD6616 Approved
0.661 Remote Similarity NPD6059 Approved
0.661 Remote Similarity NPD8294 Approved
0.661 Remote Similarity NPD8377 Approved
0.661 Remote Similarity NPD6054 Approved
0.6602 Remote Similarity NPD6050 Approved
0.6602 Remote Similarity NPD5693 Phase 1

  Bioactivity similarity: Similar Natural Products in NPASS

Bioactivity similarity was calculated based on bioactivity descriptors of compounds. The bioactivity descriptors were calculated by a recently developed AI algorithm Chemical Checker (CC) [Nature Biotechnology, 38:1087–1096, 2020; Nature Communications, 12:3932, 2021], which evaluated bioactivity similarities at five levels:
☉ A: chemistry similarity;
☉ B: biological targets similarity;
☉ C: networks similarity;
☉ D: cell-based bioactivity similarity;
☉ E: similarity based on clinical data.

Those 5 categories of CC bioactivity descriptors were calculated and then subjected to manifold projection using UMAP algorithm, to project all NPs on a 2-Dimensional space. The current NP was highlighted with a small circle in the 2-D map. Below figures: left-to-right, A-to-E.

A: chemistry similarity
B: biological targets similarity
C: networks similarity
D: cell-based bioactivity similarity
E: similarity based on clinical data