NPASS Compound

Natural Product: NPC189880

Natural Product ID	NPC189880
Common Name ? The InCHIKey will be temporarily assigned as the "Common Name" if no IUPAC name or alternative short name is available.	3Beta,6Beta-Dihydroxy-24-Noroleana-12,4(23)-Dien-27-Oic Acid
IUPAC Name	(4aR,6aR,6aR,6bR,8R,8aR,10S,12aR,14bR)-8,10-dihydroxy-2,2,4a,6b,12a-pentamethyl-9-methylidene-1,3,4,5,6,6a,7,8,8a,10,11,12,13,14b-tetradecahydropicene-6a-carboxylic acid
Synonyms
Synthetic Gene Cluster	n.a.
ChEMBL Identifier	CHEMBL550553
PubChem CID	44236365
Chemical Classification	CHEMONTID:0000000 [Organic compounds] [CHEMONTID:0000012] Lipids and lipid-like molecules [CHEMONTID:0000258] Steroids and steroid derivatives [CHEMONTID:0001194] Oxosteroids [CHEMONTID:0003557] 19-oxosteroids

The Chemical Classification was calculated by Classyfire, a software for chemical taxonomy calculation. Reference: DOI:10.1186/s13321-016-0174-y.

Chemical Representations

RDKit 3D 77 81 0 0 0 0 0 0 0 0999 V2000 6.0593 0.3530 0.4806 C 0 0 0 0 0 0 0 0 0 0 0 0 5.1038 0.4051 -0.4068 C 0 0 0 0 0 0 0 0 0 0 0 0 5.4585 0.1803 -1.8331 C 0 0 2 0 0 0 0 0 0 0 0 0 4.3971 -0.4217 -2.6561 C 0 0 0 0 0 0 0 0 0 0 0 0 2.9963 -0.2581 -2.1736 C 0 0 0 0 0 0 0 0 0 0 0 0 2.8941 -0.4753 -0.6438 C 0 0 2 0 0 0 0 0 0 0 0 0 3.6038 -1.8006 -0.4330 C 0 0 0 0 0 0 0 0 0 0 0 0 1.4688 -0.4432 -0.2929 C 0 0 1 0 0 0 0 0 0 0 0 0 0.8379 -1.7945 -0.4492 C 0 0 0 0 0 0 0 0 0 0 0 0 -0.6173 -1.6231 -0.2581 C 0 0 0 0 0 0 0 0 0 0 0 0 -1.2113 -0.6103 0.3372 C 0 0 0 0 0 0 0 0 0 0 0 0 -2.6956 -0.6142 0.4370 C 0 0 2 0 0 0 0 0 0 0 0 0 -3.2369 -0.9958 -0.9051 C 0 0 0 0 0 0 0 0 0 0 0 0 -4.5784 -0.4068 -1.2283 C 0 0 0 0 0 0 0 0 0 0 0 0 -5.7366 -1.0778 -0.5695 C 0 0 0 0 0 0 0 0 0 0 0 0 -4.7826 -0.6494 -2.7436 C 0 0 0 0 0 0 0 0 0 0 0 0 -4.5017 1.0635 -1.0842 C 0 0 0 0 0 0 0 0 0 0 0 0 -4.1139 1.4726 0.2667 C 0 0 0 0 0 0 0 0 0 0 0 0 -3.3309 0.5142 1.1149 C 0 0 1 0 0 0 0 0 0 0 0 0 -4.3523 -0.0474 2.1316 C 0 0 0 0 0 0 0 0 0 0 0 0 -2.4194 1.3811 1.9656 C 0 0 0 0 0 0 0 0 0 0 0 0 -1.0837 0.7327 2.2581 C 0 0 0 0 0 0 0 0 0 0 0 0 -0.4128 0.5430 0.9181 C 0 0 2 0 0 0 0 0 0 0 0 0 -0.5951 1.6760 0.0185 C 0 0 0 0 0 0 0 0 0 0 0 0 -1.1499 1.5233 -1.1255 O 0 0 0 0 0 0 0 0 0 0 0 0 -0.2191 2.9990 0.2647 O 0 0 0 0 0 0 0 0 0 0 0 0 1.0424 0.1408 1.0082 C 0 0 1 0 0 0 0 0 0 0 0 0 1.1449 -0.7969 2.1879 C 0 0 0 0 0 0 0 0 0 0 0 0 1.8755 1.3478 1.3251 C 0 0 0 0 0 0 0 0 0 0 0 0 3.3707 1.0081 1.3178 C 0 0 2 0 0 0 0 0 0 0 0 0 3.7051 0.6760 -0.1007 C 0 0 1 0 0 0 0 0 0 0 0 0 3.7125 0.0735 2.2531 O 0 0 0 0 0 0 0 0 0 0 0 0 6.6325 -0.5683 -1.8657 O 0 0 0 0 0 0 0 0 0 0 0 0 5.8541 0.5096 1.5287 H 0 0 0 0 0 0 0 0 0 0 0 0 7.1013 0.1551 0.2316 H 0 0 0 0 0 0 0 0 0 0 0 0 5.7513 1.1995 -2.2277 H 0 0 0 0 0 0 0 0 0 0 0 0 4.4365 0.0521 -3.6803 H 0 0 0 0 0 0 0 0 0 0 0 0 4.6371 -1.5022 -2.8574 H 0 0 0 0 0 0 0 0 0 0 0 0 2.6011 0.7320 -2.4263 H 0 0 0 0 0 0 0 0 0 0 0 0 2.3628 -1.0153 -2.7005 H 0 0 0 0 0 0 0 0 0 0 0 0 4.7048 -1.6267 -0.2380 H 0 0 0 0 0 0 0 0 0 0 0 0 3.1598 -2.4276 0.3592 H 0 0 0 0 0 0 0 0 0 0 0 0 3.5996 -2.4438 -1.3497 H 0 0 0 0 0 0 0 0 0 0 0 0 0.9422 0.2010 -1.0722 H 0 0 0 0 0 0 0 0 0 0 0 0 1.1643 -2.4657 0.4022 H 0 0 0 0 0 0 0 0 0 0 0 0 1.0565 -2.2729 -1.4212 H 0 0 0 0 0 0 0 0 0 0 0 0 -1.2772 -2.4155 -0.6493 H 0 0 0 0 0 0 0 0 0 0 0 0 -2.8915 -1.5460 1.0711 H 0 0 0 0 0 0 0 0 0 0 0 0 -3.3663 -2.1142 -1.0349 H 0 0 0 0 0 0 0 0 0 0 0 0 -2.5583 -0.7304 -1.7449 H 0 0 0 0 0 0 0 0 0 0 0 0 -5.3487 -1.9772 -0.0306 H 0 0 0 0 0 0 0 0 0 0 0 0 -6.4817 -1.5218 -1.2968 H 0 0 0 0 0 0 0 0 0 0 0 0 -6.3478 -0.4399 0.0795 H 0 0 0 0 0 0 0 0 0 0 0 0 -5.7739 -0.2103 -2.9742 H 0 0 0 0 0 0 0 0 0 0 0 0 -4.8580 -1.7288 -2.9102 H 0 0 0 0 0 0 0 0 0 0 0 0 -3.9925 -0.1480 -3.3277 H 0 0 0 0 0 0 0 0 0 0 0 0 -3.7747 1.4336 -1.8424 H 0 0 0 0 0 0 0 0 0 0 0 0 -5.5141 1.4891 -1.3313 H 0 0 0 0 0 0 0 0 0 0 0 0 -5.0468 1.8326 0.8044 H 0 0 0 0 0 0 0 0 0 0 0 0 -3.5630 2.4619 0.1484 H 0 0 0 0 0 0 0 0 0 0 0 0 -4.0054 0.0837 3.1761 H 0 0 0 0 0 0 0 0 0 0 0 0 -5.3265 0.4265 2.0630 H 0 0 0 0 0 0 0 0 0 0 0 0 -4.4343 -1.1656 2.0191 H 0 0 0 0 0 0 0 0 0 0 0 0 -2.8538 1.6477 2.9507 H 0 0 0 0 0 0 0 0 0 0 0 0 -2.1869 2.3532 1.4728 H 0 0 0 0 0 0 0 0 0 0 0 0 -0.5487 1.4099 2.9312 H 0 0 0 0 0 0 0 0 0 0 0 0 -1.3417 -0.2540 2.7347 H 0 0 0 0 0 0 0 0 0 0 0 0 -0.8470 3.7456 -0.0519 H 0 0 0 0 0 0 0 0 0 0 0 0 1.9937 -1.4701 2.1859 H 0 0 0 0 0 0 0 0 0 0 0 0 1.2404 -0.1656 3.0995 H 0 0 0 0 0 0 0 0 0 0 0 0 0.2413 -1.4428 2.2834 H 0 0 0 0 0 0 0 0 0 0 0 0 1.7936 2.1597 0.5713 H 0 0 0 0 0 0 0 0 0 0 0 0 1.6473 1.6592 2.3611 H 0 0 0 0 0 0 0 0 0 0 0 0 3.8772 1.9608 1.5676 H 0 0 0 0 0 0 0 0 0 0 0 0 3.4320 1.6058 -0.6913 H 0 0 0 0 0 0 0 0 0 0 0 0 4.0297 0.4731 3.1198 H 0 0 0 0 0 0 0 0 0 0 0 0 7.4461 -0.0135 -1.9562 H 0 0 0 0 0 0 0 0 0 0 0 0 1 2 2 0 2 3 1 0 3 4 1 0 4 5 1 0 5 6 1 0 6 7 1 6 6 8 1 0 8 9 1 0 9 10 1 0 10 11 2 0 11 12 1 0 12 13 1 0 13 14 1 0 14 15 1 0 14 16 1 0 14 17 1 0 17 18 1 0 18 19 1 0 19 20 1 1 19 21 1 0 21 22 1 0 22 23 1 0 23 24 1 6 24 25 2 0 24 26 1 0 23 27 1 0 27 28 1 1 27 29 1 0 29 30 1 0 30 31 1 0 30 32 1 0 3 33 1 0 31 2 1 0 31 6 1 0 27 8 1 0 23 11 1 0 19 12 1 0 1 34 1 0 1 35 1 0 3 36 1 6 4 37 1 0 4 38 1 0 5 39 1 0 5 40 1 0 7 41 1 0 7 42 1 0 7 43 1 0 8 44 1 6 9 45 1 0 9 46 1 0 10 47 1 0 12 48 1 1 13 49 1 0 13 50 1 0 15 51 1 0 15 52 1 0 15 53 1 0 16 54 1 0 16 55 1 0 16 56 1 0 17 57 1 0 17 58 1 0 18 59 1 0 18 60 1 0 20 61 1 0 20 62 1 0 20 63 1 0 21 64 1 0 21 65 1 0 22 66 1 0 22 67 1 0 26 68 1 0 28 69 1 0 28 70 1 0 28 71 1 0 29 72 1 0 29 73 1 0 30 74 1 1 31 75 1 6 32 76 1 0 33 77 1 0 M END

Standard InCHIKey	LWKBRYTVAGKWHM-SYXCNQSHSA-N
Standard InCHI	InChI=1S/C29H44O4/c1-17-20(30)9-10-27(5)22-8-7-18-19-15-25(2,3)11-12-26(19,4)13-14-29(18,24(32)33)28(22,6)16-21(31)23(17)27/h7,19-23,30-31H,1,8-16H2,2-6H3,(H,32,33)/t19-,20-,21+,22+,23+,26+,27+,28+,29+/m0/s1
SMILES	C=C1[C@H](CC[C@]2(C)[C@H]3CC=C4[C@@H]5CC(C)(C)CC[C@]5(C)CC[C@@]4(C(=O)O)[C@]3(C)C[C@H]([C@@H]12)O)O

Calculated Properties

Physi-Chem Properties

Molecular Weight:	456.32	Volume:	494.609 ? Van der Waals volume.
Dense:	0.923	LogP:	2.552 ? The logarithm of the n-octanol/water distribution coefficients.
logD7.4:	2.466 ? The logarithm of the n-octanol/water distribution coefficient at pH=7.4.	LogS:	-3.831 ? The logarithm of aqueous solubility value.
Rotatable Bonds:	1.0	Rigid Bonds:	28.0
TPSA:	77.76 ? Topological Polar Surface Area.	H-Bond Acceptor:	4.0
H-Bond Donor:	3.0	Rings:	5.0
Heavy Atoms:	4.0

MedChem Properties

QED Drug-Likeness Score:	0.44	GASA:	1.0 ? GASA represents the probability of being difficult to synthesize, ranging from 0 to 1.
Synthetic Accessibility Score:	5.102	Fsp³:	0.828
MCE-18:	103.245 ? MCE-18 stands for medicinal chemistry evolution.MCE-18≥45 is considered a suitable value.	Lipinski Rule-of-5:	Rejected
Pfizer Rule:	Rejected	GSK Rule:	Accepted
Golden Triangle Rule:	Rejected	BMS Rule:	0
Chelating Alert:	0	PAINS Alert:	0
Colloidal aggregators:	0.85	Fluc inhibitor:	0.0 ? The fluc inhibitor value is the probability of being fLuc inhibitors, within the range of 0 to 1.
Blue fluorescence:	0.014 ? The blue fluorescence value is the probability of being blue fluorescence, within the range of 0 to 1	Green fluorescence:	0.0 ? The green fluorescence value is the probability of being green fluorescence, within the range of 0 to 1
Reactive compounds:	0.359	Promiscuous compounds:	0.132

ADMET Properties (ADMETlab3.0)

ADMET: Absorption

Caco-2 Permeability:	-5.556	MDCK Permeability:	-5.139
Pgp-inhibitor:	0.001	Pgp-substrate:	0.107
PAMPA:	0.999 ? The experimental data for Peff was logarithmically transformed (logPeff). Molecules with log Peff values below 2.0 were classified as low-permeability (Category 0), while those with log Peff values exceeding 2.5 were classified as high-permeability (Category 1).	Human Intestinal Absorption (HIA):	0.001
20% Bioavailability (F20%):	0.544	30% Bioavailability (F30%):	0.075
50% Bioavailability (F50%):	0.934

ADMET: Distribution

Blood-Brain-Barrier Penetration (BBB):	0.379	MRP1:	0.913
Plasma Protein Binding (PPB):	96.138%	Volume Distribution (VD):	-0.409
Fu:	4.988% ? The fraction unbound in plasms.	OATP1B1 inhibitor:	0.999
OATP1B3 inhibitor:	0.751	BCRP inhibitor:	0.014
BSEP inhibitor:	0.43

ADMET: Metabolism

CYP1A2-inhibitor:	0.001	CYP1A2-substrate:	0.004
CYP2C19-inhibitor:	0.921	CYP2C19-substrate:	0.017
CYP2C9-inhibitor:	0.976	CYP2C9-substrate:	0.001
CYP2D6-inhibitor:	0.055	CYP2D6-substrate:	0.03
CYP3A4-inhibitor:	0.011	CYP3A4-substrate:	0.128
CYP2B6-substrate:	0.0	CYP2C8-inhibitor:	0.442
HLM stability:	0.988 ? Human liver microsomal (HLM) stability. Category 0: stable+ (HLM > 30 min); Category 1: unstable- (HLM ≤ 30 min). The output value is the probability of human liver microsomal instability, where a value closer to 1 indicates a higher likelihood of instability.

ADMET: Excretion

Clearance (CL):

2.132

Half-life (T1/2):

1.358

ADMET: Toxicity

hERG Blockers:	0.025	hERG Blockers (10um):	0.038
Human Hepatotoxicity (H-HT):	0.563	Drug-induced Liver Injury (DILI):	0.284
AMES Toxicity:	0.4	Rat Oral Acute Toxicity:	0.71
Maximum Recommended Daily Dose:	0.435	Skin Sensitization:	0.994
Carcinogencity:	0.855	Eye Corrosion:	0.023
Eye Irritation:	0.304	Respiratory Toxicity:	0.895
Drug-induced Neurotoxicity:	0.057	Ototoxicity:	0.679
Hematotoxicity:	0.791	Drug-induced Nephrotoxicity:	0.924
Genotoxicity:	0.905	RPMI-8226 Immunitoxicity:	0.079
A549 Cytotoxicity:	0.702	Hek293 Cytotoxicity:	0.385
BCF:	0.758 ? Bioconcentration factors are used for considering secondary poisoning potential and assessing risks to human health via the food chain. The unit is -log10[(mg/L)/(1000*MW)].	IGC50:	3.486 ? 48 hour Tetrahymena pyriformis IGC50. The unit of IGC50 is -log10[(mg/L)/(1000*MW)].
LC50DM:	5.231 ? 48 hour Daphnia magna LC50. The unit of LC50DM is -log10[(mg/L)/(1000*MW)].	LC50FM:	4.405 ? 96 hour fathead minnow LC50. The unit of LC50FM is -log10[(mg/L)/(1000*MW)].

Species Source

Organism ID	Organism Name	Taxonomy Level	Family	SuperKingdom	Isolation Part	Collection Location	Collection Time	Reference
NPO6947	Astilbe chinensis	Species	Saxifragaceae	Eukaryota	rhizomes	n.a.	n.a.	PMID[19585998]
NPO6947	Astilbe chinensis	Species	Saxifragaceae	Eukaryota	n.a.	n.a.	n.a.	Database[COCONUT]
NPO6947	Astilbe chinensis	Species	Saxifragaceae	Eukaryota	n.a.	n.a.	n.a.	Database[HerDing]
NPO6947	Astilbe chinensis	Species	Saxifragaceae	Eukaryota	n.a.	n.a.	n.a.	Database[TCMID]
NPO6947	Astilbe chinensis	Species	Saxifragaceae	Eukaryota	n.a.	n.a.	n.a.	Database[UNPD]

Note for Reference:
In addition to directly collecting NP source organism data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated them from below databases:
☉ UNPD: Universal Natural Products Database [PMID: 23638153].
☉ StreptomeDB: a database of streptomycetes natural products [PMID: 33051671].
☉ TM-MC: a database of medicinal materials and chemical compounds in Northeast Asian traditional medicine [PMID: 26156871].
☉ TCM@Taiwan: a Traditional Chinese Medicine database [PMID: 21253603].
☉ TCMID: a Traditional Chinese Medicine database [PMID: 29106634].
☉ TCMSP: The traditional Chinese medicine systems pharmacology database and analysis platform [PMID: 24735618].
☉ HerDing: a herb recommendation system to treat diseases using genes and chemicals [PMID: 26980517].
☉ MetaboLights: a metabolomics database [PMID: 27010336].
☉ FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].

NP Quantity Composition/Concentration

Organism ID	Organism Name	Organism Material Preparation	Organism Part	NP Quantity (Standard)	NP Quantity (Minimum)	NP Quantity (Maximum)	Quantity Unit	Reference

Note for Reference:
In addition to directly collecting NP quantitative data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated NP quantitative records for specific NP domains (e.g., NPS from foods or herbs) from domain-specific databases. These databases include:
☉ DUKE: Dr. Duke's Phytochemical and Ethnobotanical Databases.
☉ PHENOL EXPLORER: is the first comprehensive database on polyphenol content in foods [PMID: 24103452], its homepage can be accessed at here.
☉ FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].

Biological Activity

Activity Type	# Activity
IC50	5

Activity Type	# Activity
Cell line	5

Molecular-level activity

Target ID	Target Type	Target Name	Target Organism	Activity Type	Activity Relation	Value	Unit	Reference

In vitro activity

Target ID	Target Type	Target Name	Target Organism	Activity Type	Activity Relation	Value	Unit	Reference
NPT116	Cell line	HL-60	Homo sapiens	IC50	>	10000.0	nM	PMID[17512741]
NPT788	Cell line	SNU1	Homo sapiens	IC50	>	10000.0	nM	PMID[10514329]
NPT111	Cell line	K562	Homo sapiens	IC50	>	10000.0	nM	PMID[23394318]
NPT81	Cell line	A549	Homo sapiens	IC50	>	10000.0	nM	PMID[15332862]
NPT65	Cell line	HepG2	Homo sapiens	IC50	>	10000.0	nM	PMID[25856683]

In vivo activity

Target ID	Target Type	Target Name	Target Organism	Activity Type	Activity Relation	Value	Unit	Reference

Experimental ADME

Experiment Model	Experiment Tissue	ADME Type	ADME Relation	ADME Value	ADME Unit	Reference

Experimental Toxicity

Quantitative toxicity

Experiment Model	Experiment Organism	Toxicity Type	Toxicity Relation	Toxicity Value	Toxicity Unit	Reference

Common Abbreviations:
LC: Lethal Concentration; LD: Lethal Dose; LT:Lethal Time; NOAEL: No-observed-adverse-effect Level; BMDL: Benchmark Dose Lower Confidence Limit; BMD: Benchmark Dose; BMC:Benchmark Concentration; LOAEL: Lowest Observed Adverse Effect Level; RfD:Reference Dose; RfC:Reference Concentration; MRL: Minimal Risk Level; MEG: Maximum Exposure Guideline; PAC: Protective Action Criteria

Categorical toxicity labels

Hepatotoxicity	Carcinogenicity	Mutagenicity	Cardiotoxicity	Respiratory Toxicity	Eye Irritation	Endocrine Disruption

Note for Reference:
In addition to directly collecting NP quantitative data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated NP toxicity records from domain-specific databases. These databases include:
☉ ToxValDB: a curated database that compiles quantitative toxicity values for chemicals from diverse public sources to support toxicological research and risk assessment.
☉ TOXRIC: a comprehensive, free-to-access, online database providing toxicological/feature data. The toxicity labels are retrieved from this database. [PMID: 36400569]

Chemically structural similarity

Similar Active Natural Products in NPASS

Top-200 similar NPs were calculated against the active-NP-set (includes approximately 50,000 NPs with experimentally-derived bioactivity available in NPASS)

Similarity is measured using the Tanimoto coefficient (Tc) , which compares the binary fingerprints of two molecules. Tc is calculated as the intersection divided by the union of '1' bits in the fingerprints, ranging from 0 to 1, with 1 indicating highest similarity.

● The left chart: Distribution of similarity level between NPC189880 and all remaining natural products in the NPASS database.
● The right table: Most similar natural products (Tc>=0.5 or Top200).

range	Tanimoto Coefficient
0-0.1	24190
0.1-0.2	22444
0.2-0.3	2960
0.3-0.4	236
0.4-0.5	8
0.5-0.6	7
0.6-0.7	8
0.7-0.8	0
0.8-0.85	0
0.85-0.9	0
0.9-0.95	0
0.95-1	0

Similarity Score	Similarity Level	Natural Product ID
0.7344	Intermediate Similarity	NPC473240
0.7015	Intermediate Similarity	NPC476318
0.6667	Remote Similarity	NPC17733
0.6667	Remote Similarity	NPC470629
0.6377	Remote Similarity	NPC126369
0.6377	Remote Similarity	NPC470589
0.6377	Remote Similarity	NPC111110
0.6338	Remote Similarity	NPC260149
0.6286	Remote Similarity	NPC209868
0.6029	Remote Similarity	NPC71507
0.5797	Remote Similarity	NPC199595
0.5694	Remote Similarity	NPC1753
0.5571	Remote Similarity	NPC251779
0.5479	Remote Similarity	NPC470590
0.5479	Remote Similarity	NPC285184
0.5132	Remote Similarity	NPC476327
0.5132	Remote Similarity	NPC195715

Similar Clinical/Approved Drugs

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules.

● The left chart: Distribution of similarity level between NPC189880 and all drugs/candidates.
● The right table: Most similar clinical/approved drugs (Tc>=0.5 or Top200).

range	Tanimoto Coefficient
0-0.1	6850
0.1-0.2	2235
0.2-0.3	63
0.3-0.4	2
0.4-0.5	0
0.5-0.6	0
0.6-0.7	0
0.7-0.8	0
0.8-0.85	0
0.85-0.9	0
0.9-0.95	0
0.95-1	0

Similarity Score	Similarity Level	Drug ID	Developmental Stage
		NPD

Bioactivity similarity

Similar Natural Products in NPASS

Similarity level is defined by Bioactivity similarity was calculated based on bioactivity descriptors of compounds. The bioactivity descriptors were calculated by a recently developed AI algorithm Chemical Checker (CC) [Nature Biotechnology, 38:1087–1096, 2020; Nature Communications, 12:3932, 2021], which evaluated bioactivity similarities at five levels:
☉ A: chemistry similarity;
☉ B: biological targets similarity;
☉ C: networks similarity;
☉ D: cell-based bioactivity similarity;
☉ E: similarity based on clinical data.
Those 5 categories of CC bioactivity descriptors were calculated and then subjected to manifold projection using UMAP algorithm, to project all NPs on a 2-Dimensional space. The current NP was highlighted with a small circle in the 2-D map. Below figures: left-to-right, A-to-E.

A: chemistry similarity

B: biological targets similarity

C: networks similarity

D: cell-based bioactivity similarity

E: similarity based on clinical data