Structure

Physi-Chem Properties

Molecular Weight:  288.25
Volume:  332.324
LogP:  4.582
LogD:  4.122
LogS:  -4.472
# Rotatable Bonds:  2
TPSA:  20.23
# H-Bond Aceptor:  1
# H-Bond Donor:  1
# Rings:  3
# Heavy Atoms:  1

MedChem Properties

QED Drug-Likeness Score:  0.748
Synthetic Accessibility Score:  4.278
Fsp3:  0.8
Lipinski Rule-of-5:  Accepted
Pfizer Rule:  Rejected
GSK Rule:  Rejected
BMS Rule:  0
Golden Triangle Rule:  Accepted
Chelating Alert:  0
PAINS Alert:  0

ADMET Properties (ADMETlab2.0)

ADMET: Absorption

Caco-2 Permeability:  -4.725
MDCK Permeability:  1.8789172827382572e-05
Pgp-inhibitor:  0.965
Pgp-substrate:  0.004
Human Intestinal Absorption (HIA):  0.003
20% Bioavailability (F20%):  0.025
30% Bioavailability (F30%):  0.272

ADMET: Distribution

Blood-Brain-Barrier Penetration (BBB):  0.079
Plasma Protein Binding (PPB):  98.27192687988281%
Volume Distribution (VD):  1.46
Pgp-substrate:  1.725226879119873%

ADMET: Metabolism

CYP1A2-inhibitor:  0.316
CYP1A2-substrate:  0.464
CYP2C19-inhibitor:  0.285
CYP2C19-substrate:  0.926
CYP2C9-inhibitor:  0.434
CYP2C9-substrate:  0.23
CYP2D6-inhibitor:  0.309
CYP2D6-substrate:  0.302
CYP3A4-inhibitor:  0.856
CYP3A4-substrate:  0.635

ADMET: Excretion

Clearance (CL):  2.302
Half-life (T1/2):  0.61

ADMET: Toxicity

hERG Blockers:  0.045
Human Hepatotoxicity (H-HT):  0.365
Drug-inuced Liver Injury (DILI):  0.018
AMES Toxicity:  0.006
Rat Oral Acute Toxicity:  0.016
Maximum Recommended Daily Dose:  0.911
Skin Sensitization:  0.949
Carcinogencity:  0.049
Eye Corrosion:  0.703
Eye Irritation:  0.974
Respiratory Toxicity:  0.646

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  Natural Product: NPC216460

Natural Product ID:  NPC216460
Common Name*:   Abietadien-18-Ol
IUPAC Name:   [(1R,4aR,4bR,10aR)-1,4a-dimethyl-7-propan-2-yl-2,3,4,4b,5,6,10,10a-octahydrophenanthren-1-yl]methanol
Synonyms:   Abietadien-18-ol
Standard InCHIKey:  GQRUHVMVWNKUFW-LWYYNNOASA-N
Standard InCHI:  InChI=1S/C20H32O/c1-14(2)15-6-8-17-16(12-15)7-9-18-19(3,13-21)10-5-11-20(17,18)4/h7,12,14,17-18,21H,5-6,8-11,13H2,1-4H3/t17-,18-,19-,20+/m0/s1
SMILES:  CC(C)C1=CC2=CC[C@H]3[C@@](C)(CCC[C@]3(C)[C@H]2CC1)CO
Synthetic Gene Cluster:   n.a.
ChEMBL Identifier:   CHEMBL304954
PubChem CID:   443474
Chemical Classification**:  
  • CHEMONTID:0000000 [Organic compounds]
    • [CHEMONTID:0000012] Lipids and lipid-like molecules
      • [CHEMONTID:0000259] Prenol lipids
        • [CHEMONTID:0001551] Diterpenoids

*Note: the InCHIKey will be temporarily assigned as the "Common Name" if no IUPAC name or alternative short name is available.
**Note: the Chemical Classification was calculated by NPClassifier Version 1.5. Reference: PMID:34662515.

  Species Source

Organism ID Organism Name Taxonomy Level Family SuperKingdom Isolation Part Collection Location Collection Time Reference
NPO17839 Machaerium mucronulatum Species Dolichopodidae Eukaryota n.a. n.a. n.a. DOI[10.1016/S0031-9422(00)94598-9]
NPO25454 Plumbago europaea Species Plumbaginaceae Eukaryota n.a. root n.a. DOI[10.2225/vol5-issue3-fulltext-4]
NPO21179 Streptomyces griseoaurantiacus Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[10048567]
NPO21302 Cladosporium herbarum Species Cladosporiaceae Eukaryota n.a. n.a. n.a. PMID[11325242]
NPO7174 Callyspongia truncata Species Callyspongiidae Eukaryota n.a. n.a. n.a. PMID[12088440]
NPO7174 Callyspongia truncata Species Callyspongiidae Eukaryota n.a. n.a. n.a. PMID[12713420]
NPO7090 Ammi majus Species Apiaceae Eukaryota n.a. n.a. n.a. PMID[15009205]
NPO21302 Cladosporium herbarum Species Cladosporiaceae Eukaryota n.a. n.a. n.a. PMID[16038560]
NPO1338 Arcangelisia gusanlung Species Menispermaceae Eukaryota n.a. stem n.a. PMID[21500777]
NPO9604 Amycolatopsis lurida Species Pseudonocardiaceae Bacteria n.a. n.a. n.a. PMID[25323720]
NPO16653 Matteuccia struthiopteris Species Onocleaceae Eukaryota rhizomes Liaoning province, China 2011-SEP PMID[25927664]
NPO16966 Leptospermum scoparium Species Myrtaceae Eukaryota n.a. n.a. n.a. PMID[26731565]
NPO18983 Cleidion brevipetiolatum Species Euphorbiaceae Eukaryota n.a. n.a. n.a. PMID[31419126]
NPO16653 Matteuccia struthiopteris Species Onocleaceae Eukaryota n.a. n.a. Database[FooDB]
NPO19127 Citrus tankan Species Rutaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO16653 Matteuccia struthiopteris Species Onocleaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO7090 Ammi majus Species Apiaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO25454 Plumbago europaea Species Plumbaginaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO16293 Babylonia japonica Species Buccinidae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO18881 Loropetalum chinense Species Hamamelidaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO18306 Juniperus thurifera Species Cupressaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO17385 Magnolia acuminata Species Magnoliaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO13963 Laurencia elata Species Rhodomelaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO14307 Rhizopus oryzae Species Rhizopodaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO25454 Plumbago europaea Species Plumbaginaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO18881 Loropetalum chinense Species Hamamelidaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO17831 Millettia racemosa Species Fabaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO18306 Juniperus thurifera Species Cupressaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO7090 Ammi majus Species Apiaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO16653 Matteuccia struthiopteris Species Onocleaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO13963 Laurencia elata Species Rhodomelaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO5764 Ophioglossum vulgatum Species Ophioglossaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO15358 Entandrophragma cylindricum Species Meliaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO16293 Babylonia japonica Species Buccinidae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO17385 Magnolia acuminata Species Magnoliaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO19127 Citrus tankan Species Rutaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO18881 Loropetalum chinense Species Hamamelidaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO19127 Citrus tankan Species Rutaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO17385 Magnolia acuminata Species Magnoliaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO16653 Matteuccia struthiopteris Species Onocleaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO7090 Ammi majus Species Apiaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO12801 Aglaia meridionalis Species Meliaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO22147 Goniothalamus macrophyllus Species Annonaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO7174 Callyspongia truncata Species Callyspongiidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO11677 Lactobacillus acidophilus Species Lactobacillaceae Bacteria n.a. n.a. n.a. Database[UNPD]
NPO17068 Talaromyces wortmanni Species Trichocomaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO18792 Crotalaria lechnaultii Species Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO7090 Ammi majus Species Apiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO18061 Anacystis cyanea n.a. n.a. n.a. n.a. n.a. n.a. Database[UNPD]
NPO17839 Machaerium mucronulatum Species Dolichopodidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO22968 Elaeocarpus serratus Species Elaeocarpaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO14307 Rhizopus oryzae Species Rhizopodaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO21938 Coleus carnosus Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO11603 Lathyrus macrorrhizus Species Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO17718 Artemisia schmidtiana Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO18173 Pyrocystis lunula Species Pyrocystaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO15469 Myodocarpus gracilis Species Myodocarpaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO10712 Tabebuia rosea Species Bignoniaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO18575 Ochtodes crockeri Species Rhizophyllidaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO3050 Cladonia pseudodidyma Species Cladoniaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO15358 Entandrophragma cylindricum Species Meliaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO1338 Arcangelisia gusanlung Species Menispermaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO21704 Papaver suaveolens Species Papaveraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO9535 Cortinarius basirubescens Species Cortinariaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO16293 Babylonia japonica Species Buccinidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO18983 Cleidion brevipetiolatum Species Euphorbiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO9604 Amycolatopsis lurida Species Pseudonocardiaceae Bacteria n.a. n.a. n.a. Database[UNPD]
NPO21302 Cladosporium herbarum Species Cladosporiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO6953.1 Aconitum sachalinense subsp. yezoense Subspecies Ranunculaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO13308 Polycitor adriaticus Species Polycitoridae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO18306 Juniperus thurifera Species Cupressaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO17190 Senecio erraticus Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO7807 Polyporus sulphureus Species Polyporaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO19189 Brickellia pendula Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO17385 Magnolia acuminata Species Magnoliaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO18242 Gleichenia glauca Species Gleicheniaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO17709 Timonius kaniensis Species Rubiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO17831 Millettia racemosa Species Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO21179 Streptomyces griseoaurantiacus Species Streptomycetaceae Bacteria n.a. n.a. n.a. Database[UNPD]
NPO13963 Laurencia elata Species Rhodomelaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO17596 Ficus maxima Species Moraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO17802 Simmondsia chinensis Species Simmondsiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO20425 Epimedium macranthum Species Berberidaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO16966 Leptospermum scoparium Species Myrtaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO18377 Chaetomium retardatum Species Chaetomiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO3746 Hesperocyparis nevadensis Species Cupressaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO18881 Loropetalum chinense Species Hamamelidaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO25454 Plumbago europaea Species Plumbaginaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO16653 Matteuccia struthiopteris Species Onocleaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO23157 Wigandia kunthii Species Namaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO18847 Copaifera paupera Species Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO15608 Tanacetum santolina Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO22530 Vigna luteola Species Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO21894 Psychotria granadensis Species Rubiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO19127 Citrus tankan Species Rutaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO18520 Helipterum strictum Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO12282 Parmelia conspersa Species Parmeliaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO16829 Dunaliella acidophila Species Dunaliellaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO13594 Hippocratea indica Species Celastraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO17275 Chamaemelum scariosum Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO18707 Allium ursinum Species Amaryllidaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO19057 Lentinellus omphalodes Species Auriscalpiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO5764 Ophioglossum vulgatum Species Ophioglossaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO23194 Berberis beaniana Species Berberidaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO12072 Escallonia philippiana Species Escalloniaceae Eukaryota n.a. n.a. n.a. Database[UNPD]

☑ Note for Reference:
In addition to directly collecting NP source organism data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated them from below databases:
UNPD: Universal Natural Products Database [PMID: 23638153].
StreptomeDB: a database of streptomycetes natural products [PMID: 33051671].
TM-MC: a database of medicinal materials and chemical compounds in Northeast Asian traditional medicine [PMID: 26156871].
TCM@Taiwan: a Traditional Chinese Medicine database [PMID: 21253603].
TCMID: a Traditional Chinese Medicine database [PMID: 29106634].
TCMSP: The traditional Chinese medicine systems pharmacology database and analysis platform [PMID: 24735618].
HerDing: a herb recommendation system to treat diseases using genes and chemicals [PMID: 26980517].
MetaboLights: a metabolomics database [PMID: 27010336].
FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].

  NP Quantity Composition/Concentration

Organism ID NP ID Organism Material Preparation Organism Part NP Quantity (Standard) NP Quantity (Minimum) NP Quantity (Maximum) Quantity Unit Reference

☑ Note for Reference:
In addition to directly collecting NP quantitative data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated NP quantitative records for specific NP domains (e.g., NPS from foods or herbs) from domain-specific databases. These databases include:
DUKE: Dr. Duke's Phytochemical and Ethnobotanical Databases.
PHENOL EXPLORER: is the first comprehensive database on polyphenol content in foods [PMID: 24103452], its homepage can be accessed at here.
FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].

  Biological Activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference
NPT165 Cell Line HeLa Homo sapiens CC50 = 5.2 ug.mL-1 PMID[518878]
NPT189 Cell Line Vero Chlorocebus aethiops CC50 = 12.7 ug.mL-1 PMID[518878]
NPT165 Cell Line HeLa Homo sapiens CC100 = 25.0 ug ml-1 PMID[518878]
NPT2826 Protein Family Pyruvate dehydrogenase kinase Homo sapiens IC50 ~ 10000.0 nM PMID[518877]
NPT32 Organism Mus musculus Mus musculus Efficacy = 7.0 % PMID[518877]
NPT32 Organism Mus musculus Mus musculus Efficacy = -8.0 % PMID[518877]
NPT32 Organism Mus musculus Mus musculus Efficacy = 19.0 % PMID[518877]
NPT32 Organism Mus musculus Mus musculus Efficacy = 10.0 % PMID[518877]
NPT32 Organism Mus musculus Mus musculus Efficacy = 24.0 % PMID[518877]
NPT2 Others Unspecified Selectivity Index = 2.4 n.a. PMID[518878]
NPT190 Organism Human herpesvirus 1 Human herpesvirus 1 Activity = 10.0 n.a. PMID[518878]
NPT190 Organism Human herpesvirus 1 Human herpesvirus 1 Activity = 6.25 ug ml-1 PMID[518878]

☑ Note for Activity Records:
☉ The quantitative biological activities were primarily integrated from ChEMBL (Version-30) database and were also directly collected from PubMed literature. PubMed PMID was provided as the reference link for each activity record.

  Chemically structural similarity: I. Similar Active Natural Products in NPASS

Top-200 similar NPs were calculated against the active-NP-set (includes 4,3285 NPs with experimentally-derived bioactivity available in NPASS)

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules. Tc lies between [0, 1] where '1' indicates the highest similarity. What is Tanimoto coefficient

●  The left chart: Distribution of similarity level between NPC216460 and all remaining natural products in the NPASS database.
●  The right table: Most similar natural products (Tc>=0.56 or Top200).

Similarity Score Similarity Level Natural Product ID
0.9385 High Similarity NPC32055
0.9231 High Similarity NPC197805
0.9219 High Similarity NPC163678
0.913 High Similarity NPC471468
0.9077 High Similarity NPC222366
0.9077 High Similarity NPC476039
0.9077 High Similarity NPC149680
0.9077 High Similarity NPC286669
0.8806 High Similarity NPC208999
0.875 High Similarity NPC318136
0.875 High Similarity NPC186191
0.875 High Similarity NPC205455
0.8696 High Similarity NPC110799
0.8571 High Similarity NPC182717
0.8571 High Similarity NPC471799
0.8551 High Similarity NPC145498
0.8551 High Similarity NPC34834
0.8529 High Similarity NPC160209
0.8493 Intermediate Similarity NPC76931
0.8493 Intermediate Similarity NPC72507
0.8493 Intermediate Similarity NPC307965
0.8493 Intermediate Similarity NPC18603
0.8472 Intermediate Similarity NPC202642
0.8472 Intermediate Similarity NPC106432
0.8472 Intermediate Similarity NPC46160
0.8472 Intermediate Similarity NPC470362
0.8451 Intermediate Similarity NPC100334
0.8451 Intermediate Similarity NPC471797
0.8429 Intermediate Similarity NPC242001
0.8382 Intermediate Similarity NPC68703
0.8382 Intermediate Similarity NPC69649
0.8382 Intermediate Similarity NPC171225
0.8356 Intermediate Similarity NPC214570
0.8333 Intermediate Similarity NPC285893
0.8333 Intermediate Similarity NPC28657
0.8333 Intermediate Similarity NPC136188
0.8333 Intermediate Similarity NPC22105
0.8333 Intermediate Similarity NPC322353
0.8333 Intermediate Similarity NPC162742
0.8333 Intermediate Similarity NPC257347
0.8333 Intermediate Similarity NPC288035
0.8333 Intermediate Similarity NPC471723
0.8333 Intermediate Similarity NPC230301
0.8333 Intermediate Similarity NPC304309
0.8333 Intermediate Similarity NPC118508
0.8333 Intermediate Similarity NPC134847
0.8333 Intermediate Similarity NPC141071
0.8333 Intermediate Similarity NPC121744
0.831 Intermediate Similarity NPC130665
0.831 Intermediate Similarity NPC474743
0.831 Intermediate Similarity NPC68443
0.831 Intermediate Similarity NPC474140
0.8289 Intermediate Similarity NPC201852
0.8289 Intermediate Similarity NPC202389
0.8243 Intermediate Similarity NPC275910
0.8235 Intermediate Similarity NPC279434
0.8219 Intermediate Similarity NPC290598
0.8219 Intermediate Similarity NPC244488
0.8219 Intermediate Similarity NPC27765
0.8219 Intermediate Similarity NPC321381
0.8219 Intermediate Similarity NPC113733
0.8219 Intermediate Similarity NPC30590
0.8219 Intermediate Similarity NPC107059
0.8219 Intermediate Similarity NPC265328
0.8219 Intermediate Similarity NPC300324
0.8219 Intermediate Similarity NPC134330
0.8219 Intermediate Similarity NPC240604
0.8219 Intermediate Similarity NPC129165
0.8219 Intermediate Similarity NPC122418
0.8219 Intermediate Similarity NPC321016
0.8219 Intermediate Similarity NPC247325
0.8219 Intermediate Similarity NPC106364
0.8219 Intermediate Similarity NPC189883
0.8219 Intermediate Similarity NPC120098
0.8219 Intermediate Similarity NPC73875
0.8209 Intermediate Similarity NPC290367
0.8209 Intermediate Similarity NPC225415
0.8194 Intermediate Similarity NPC477138
0.8194 Intermediate Similarity NPC243342
0.8194 Intermediate Similarity NPC91858
0.8182 Intermediate Similarity NPC237795
0.8182 Intermediate Similarity NPC470384
0.8182 Intermediate Similarity NPC82538
0.8169 Intermediate Similarity NPC167706
0.8158 Intermediate Similarity NPC6707
0.8143 Intermediate Similarity NPC474248
0.8143 Intermediate Similarity NPC476431
0.8143 Intermediate Similarity NPC471560
0.8116 Intermediate Similarity NPC114651
0.8108 Intermediate Similarity NPC157996
0.8108 Intermediate Similarity NPC34019
0.8108 Intermediate Similarity NPC91594
0.8108 Intermediate Similarity NPC155986
0.8108 Intermediate Similarity NPC318495
0.8108 Intermediate Similarity NPC471798
0.8108 Intermediate Similarity NPC198968
0.8108 Intermediate Similarity NPC90979
0.8108 Intermediate Similarity NPC472805
0.8108 Intermediate Similarity NPC101475
0.8108 Intermediate Similarity NPC34177
0.8108 Intermediate Similarity NPC130136
0.8108 Intermediate Similarity NPC40394
0.8088 Intermediate Similarity NPC476737
0.8088 Intermediate Similarity NPC27243
0.8082 Intermediate Similarity NPC138374
0.8082 Intermediate Similarity NPC66566
0.8082 Intermediate Similarity NPC34700
0.8082 Intermediate Similarity NPC477923
0.8082 Intermediate Similarity NPC291503
0.8077 Intermediate Similarity NPC53385
0.8077 Intermediate Similarity NPC231310
0.8077 Intermediate Similarity NPC238485
0.8056 Intermediate Similarity NPC201373
0.8052 Intermediate Similarity NPC20853
0.8052 Intermediate Similarity NPC15910
0.8028 Intermediate Similarity NPC92801
0.8028 Intermediate Similarity NPC475728
0.8 Intermediate Similarity NPC22955
0.8 Intermediate Similarity NPC94192
0.8 Intermediate Similarity NPC477514
0.8 Intermediate Similarity NPC196753
0.8 Intermediate Similarity NPC83351
0.8 Intermediate Similarity NPC253807
0.8 Intermediate Similarity NPC99168
0.8 Intermediate Similarity NPC473943
0.8 Intermediate Similarity NPC230295
0.8 Intermediate Similarity NPC474989
0.8 Intermediate Similarity NPC96484
0.8 Intermediate Similarity NPC158662
0.8 Intermediate Similarity NPC87604
0.8 Intermediate Similarity NPC477522
0.8 Intermediate Similarity NPC98386
0.8 Intermediate Similarity NPC167891
0.8 Intermediate Similarity NPC474216
0.8 Intermediate Similarity NPC300499
0.8 Intermediate Similarity NPC470396
0.7973 Intermediate Similarity NPC265588
0.7973 Intermediate Similarity NPC477925
0.7973 Intermediate Similarity NPC96319
0.7973 Intermediate Similarity NPC309399
0.7973 Intermediate Similarity NPC274079
0.7973 Intermediate Similarity NPC470749
0.7973 Intermediate Similarity NPC237460
0.7971 Intermediate Similarity NPC202017
0.7949 Intermediate Similarity NPC309309
0.7949 Intermediate Similarity NPC291999
0.7945 Intermediate Similarity NPC469534
0.7945 Intermediate Similarity NPC469533
0.7945 Intermediate Similarity NPC27395
0.7945 Intermediate Similarity NPC469593
0.7945 Intermediate Similarity NPC329090
0.7945 Intermediate Similarity NPC476366
0.7945 Intermediate Similarity NPC201048
0.7941 Intermediate Similarity NPC107540
0.7922 Intermediate Similarity NPC121984
0.7922 Intermediate Similarity NPC6663
0.7917 Intermediate Similarity NPC164022
0.7895 Intermediate Similarity NPC30986
0.7895 Intermediate Similarity NPC81306
0.7895 Intermediate Similarity NPC209430
0.7895 Intermediate Similarity NPC328714
0.7895 Intermediate Similarity NPC291379
0.7895 Intermediate Similarity NPC143182
0.7895 Intermediate Similarity NPC28862
0.7895 Intermediate Similarity NPC474113
0.7895 Intermediate Similarity NPC1319
0.7895 Intermediate Similarity NPC47982
0.7895 Intermediate Similarity NPC109546
0.7895 Intermediate Similarity NPC84694
0.7895 Intermediate Similarity NPC53744
0.7887 Intermediate Similarity NPC269877
0.7887 Intermediate Similarity NPC167272
0.7867 Intermediate Similarity NPC470711
0.7867 Intermediate Similarity NPC477924
0.7867 Intermediate Similarity NPC470758
0.7838 Intermediate Similarity NPC171148
0.7838 Intermediate Similarity NPC319090
0.7838 Intermediate Similarity NPC69383
0.7838 Intermediate Similarity NPC32832
0.7838 Intermediate Similarity NPC313179
0.7838 Intermediate Similarity NPC328104
0.7821 Intermediate Similarity NPC87489
0.7792 Intermediate Similarity NPC234193
0.7792 Intermediate Similarity NPC164840
0.7792 Intermediate Similarity NPC2482
0.7792 Intermediate Similarity NPC209944
0.7792 Intermediate Similarity NPC295131
0.7792 Intermediate Similarity NPC26117
0.7792 Intermediate Similarity NPC241290
0.7792 Intermediate Similarity NPC236112
0.7778 Intermediate Similarity NPC49422
0.7778 Intermediate Similarity NPC9161
0.7778 Intermediate Similarity NPC271967
0.7778 Intermediate Similarity NPC475772
0.7763 Intermediate Similarity NPC65897
0.7763 Intermediate Similarity NPC85346
0.7763 Intermediate Similarity NPC244385
0.7763 Intermediate Similarity NPC6978
0.7763 Intermediate Similarity NPC312328
0.7763 Intermediate Similarity NPC138621

  Chemically structural similarity: II. Similar Clinical/Approved Drugs

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules.

●  The left chart: Distribution of similarity level between NPC216460 and all drugs/candidates.
●  The right table: Most similar clinical/approved drugs (Tc>=0.56 or Top200).

Similarity Score Similarity Level Drug ID Developmental Stage
0.8333 Intermediate Similarity NPD6942 Approved
0.8333 Intermediate Similarity NPD7339 Approved
0.7973 Intermediate Similarity NPD3701 Clinical (unspecified phase)
0.7945 Intermediate Similarity NPD6926 Approved
0.7945 Intermediate Similarity NPD6924 Approved
0.7917 Intermediate Similarity NPD4243 Approved
0.7895 Intermediate Similarity NPD7645 Phase 2
0.7887 Intermediate Similarity NPD6923 Approved
0.7887 Intermediate Similarity NPD6922 Approved
0.7838 Intermediate Similarity NPD8264 Approved
0.7778 Intermediate Similarity NPD7143 Approved
0.7778 Intermediate Similarity NPD7144 Approved
0.7733 Intermediate Similarity NPD6933 Approved
0.7703 Intermediate Similarity NPD4784 Approved
0.7703 Intermediate Similarity NPD4785 Approved
0.7671 Intermediate Similarity NPD7150 Approved
0.7671 Intermediate Similarity NPD7151 Approved
0.7671 Intermediate Similarity NPD7152 Approved
0.7564 Intermediate Similarity NPD7525 Registered
0.7439 Intermediate Similarity NPD5279 Phase 3
0.7436 Intermediate Similarity NPD6929 Approved
0.7407 Intermediate Similarity NPD4786 Approved
0.7375 Intermediate Similarity NPD3667 Approved
0.7368 Intermediate Similarity NPD5275 Approved
0.7368 Intermediate Similarity NPD4190 Phase 3
0.7342 Intermediate Similarity NPD6931 Approved
0.7342 Intermediate Similarity NPD6930 Phase 2
0.7342 Intermediate Similarity NPD7509 Discontinued
0.7273 Intermediate Similarity NPD342 Phase 1
0.7195 Intermediate Similarity NPD3666 Approved
0.7195 Intermediate Similarity NPD3665 Phase 1
0.7195 Intermediate Similarity NPD3133 Approved
0.7179 Intermediate Similarity NPD6932 Approved
0.7179 Intermediate Similarity NPD5776 Phase 2
0.7179 Intermediate Similarity NPD6925 Approved
0.7164 Intermediate Similarity NPD4219 Approved
0.7125 Intermediate Similarity NPD4748 Discontinued
0.7089 Intermediate Similarity NPD7322 Clinical (unspecified phase)
0.7089 Intermediate Similarity NPD7145 Approved
0.7073 Intermediate Similarity NPD6695 Phase 3
0.7024 Intermediate Similarity NPD4694 Approved
0.7024 Intermediate Similarity NPD3618 Phase 1
0.7024 Intermediate Similarity NPD5280 Approved
0.7 Intermediate Similarity NPD4195 Approved
0.7 Intermediate Similarity NPD6683 Phase 2
0.6988 Remote Similarity NPD7338 Clinical (unspecified phase)
0.6977 Remote Similarity NPD5328 Approved
0.6941 Remote Similarity NPD4751 Clinical (unspecified phase)
0.6914 Remote Similarity NPD7514 Phase 3
0.6914 Remote Similarity NPD7332 Phase 2
0.6905 Remote Similarity NPD6893 Approved
0.6829 Remote Similarity NPD6898 Phase 1
0.6829 Remote Similarity NPD6902 Approved
0.6818 Remote Similarity NPD7515 Phase 2
0.6818 Remote Similarity NPD6411 Approved
0.6818 Remote Similarity NPD6079 Approved
0.6782 Remote Similarity NPD7285 Clinical (unspecified phase)
0.6782 Remote Similarity NPD4753 Phase 2
0.6747 Remote Similarity NPD4223 Phase 3
0.6747 Remote Similarity NPD4221 Approved
0.6744 Remote Similarity NPD7750 Discontinued
0.6744 Remote Similarity NPD7524 Approved
0.6707 Remote Similarity NPD4695 Discontinued
0.6706 Remote Similarity NPD5329 Approved
0.6667 Remote Similarity NPD368 Approved
0.6629 Remote Similarity NPD5284 Approved
0.6629 Remote Similarity NPD5281 Approved
0.6628 Remote Similarity NPD5690 Phase 2
0.6615 Remote Similarity NPD8262 Approved
0.6591 Remote Similarity NPD5764 Clinical (unspecified phase)
0.6591 Remote Similarity NPD6101 Approved
0.6588 Remote Similarity NPD3668 Phase 3
0.6588 Remote Similarity NPD4197 Approved
0.6582 Remote Similarity NPD5733 Approved
0.6556 Remote Similarity NPD6399 Phase 3
0.6556 Remote Similarity NPD4202 Approved
0.6517 Remote Similarity NPD4096 Approved
0.6506 Remote Similarity NPD8259 Clinical (unspecified phase)
0.6484 Remote Similarity NPD7748 Approved
0.6471 Remote Similarity NPD4788 Approved
0.6463 Remote Similarity NPD3617 Approved
0.6452 Remote Similarity NPD6084 Phase 2
0.6452 Remote Similarity NPD6083 Phase 2
0.6444 Remote Similarity NPD7087 Discontinued
0.6437 Remote Similarity NPD5205 Approved
0.6437 Remote Similarity NPD5330 Approved
0.6437 Remote Similarity NPD4693 Phase 3
0.6437 Remote Similarity NPD7521 Approved
0.6437 Remote Similarity NPD4689 Approved
0.6437 Remote Similarity NPD4519 Discontinued
0.6437 Remote Similarity NPD6684 Approved
0.6437 Remote Similarity NPD7334 Approved
0.6437 Remote Similarity NPD6409 Approved
0.6437 Remote Similarity NPD7146 Approved
0.6437 Remote Similarity NPD4688 Approved
0.6437 Remote Similarity NPD4690 Approved
0.6437 Remote Similarity NPD4138 Approved
0.6437 Remote Similarity NPD4623 Approved
0.6429 Remote Similarity NPD4692 Approved
0.6429 Remote Similarity NPD4139 Approved
0.6413 Remote Similarity NPD5695 Phase 3
0.6413 Remote Similarity NPD5210 Approved
0.6413 Remote Similarity NPD4629 Approved
0.6375 Remote Similarity NPD4687 Approved
0.6374 Remote Similarity NPD5133 Approved
0.6344 Remote Similarity NPD5220 Clinical (unspecified phase)
0.6344 Remote Similarity NPD5222 Approved
0.6344 Remote Similarity NPD5221 Approved
0.6344 Remote Similarity NPD4697 Phase 3
0.6329 Remote Similarity NPD5276 Approved
0.6322 Remote Similarity NPD7520 Clinical (unspecified phase)
0.6316 Remote Similarity NPD6404 Discontinued
0.6292 Remote Similarity NPD6903 Approved
0.6292 Remote Similarity NPD6672 Approved
0.6292 Remote Similarity NPD4722 Approved
0.6292 Remote Similarity NPD7513 Clinical (unspecified phase)
0.6292 Remote Similarity NPD5737 Approved
0.6292 Remote Similarity NPD4723 Approved
0.6292 Remote Similarity NPD4518 Approved
0.6277 Remote Similarity NPD4755 Approved
0.6277 Remote Similarity NPD7902 Approved
0.6277 Remote Similarity NPD5173 Approved
0.6264 Remote Similarity NPD6050 Approved
0.625 Remote Similarity NPD3574 Clinical (unspecified phase)
0.6222 Remote Similarity NPD6051 Approved
0.6211 Remote Similarity NPD7638 Approved
0.6211 Remote Similarity NPD5290 Discontinued
0.6196 Remote Similarity NPD5778 Approved
0.6196 Remote Similarity NPD5779 Approved
0.6173 Remote Similarity NPD4058 Approved
0.6154 Remote Similarity NPD4001 Clinical (unspecified phase)
0.6154 Remote Similarity NPD3621 Clinical (unspecified phase)
0.6154 Remote Similarity NPD5692 Phase 3
0.6154 Remote Similarity NPD5207 Approved
0.6154 Remote Similarity NPD7136 Phase 2
0.6146 Remote Similarity NPD4700 Approved
0.6146 Remote Similarity NPD5286 Approved
0.6146 Remote Similarity NPD4696 Approved
0.6146 Remote Similarity NPD7640 Approved
0.6146 Remote Similarity NPD7639 Approved
0.6146 Remote Similarity NPD5285 Approved
0.6136 Remote Similarity NPD1696 Phase 3
0.6098 Remote Similarity NPD8039 Approved
0.6087 Remote Similarity NPD7637 Suspended
0.6087 Remote Similarity NPD5694 Approved
0.6082 Remote Similarity NPD5223 Approved
0.6076 Remote Similarity NPD4137 Phase 3
0.6067 Remote Similarity NPD6098 Approved
0.6053 Remote Similarity NPD5325 Clinical (unspecified phase)
0.6049 Remote Similarity NPD4732 Discontinued
0.6042 Remote Similarity NPD5696 Approved
0.6024 Remote Similarity NPD1346 Approved
0.602 Remote Similarity NPD5224 Approved
0.602 Remote Similarity NPD5225 Approved
0.602 Remote Similarity NPD5226 Approved
0.602 Remote Similarity NPD4633 Approved
0.602 Remote Similarity NPD5211 Phase 2
0.6 Remote Similarity NPD6675 Approved
0.6 Remote Similarity NPD4691 Approved
0.6 Remote Similarity NPD4193 Approved
0.6 Remote Similarity NPD4192 Approved
0.6 Remote Similarity NPD7614 Phase 1
0.6 Remote Similarity NPD4747 Approved
0.6 Remote Similarity NPD5739 Approved
0.6 Remote Similarity NPD6938 Clinical (unspecified phase)
0.6 Remote Similarity NPD7128 Approved
0.6 Remote Similarity NPD4194 Approved
0.6 Remote Similarity NPD6939 Phase 2
0.6 Remote Similarity NPD6402 Approved
0.6 Remote Similarity NPD4191 Approved
0.5977 Remote Similarity NPD4752 Clinical (unspecified phase)
0.596 Remote Similarity NPD5175 Approved
0.596 Remote Similarity NPD4754 Approved
0.596 Remote Similarity NPD5174 Approved
0.5957 Remote Similarity NPD7901 Clinical (unspecified phase)
0.5957 Remote Similarity NPD7900 Approved
0.5941 Remote Similarity NPD6412 Phase 2
0.5938 Remote Similarity NPD1799 Clinical (unspecified phase)
0.59 Remote Similarity NPD5141 Approved
0.5897 Remote Similarity NPD7331 Phase 2
0.5882 Remote Similarity NPD6881 Approved
0.5882 Remote Similarity NPD6899 Approved
0.5882 Remote Similarity NPD7320 Approved
0.5875 Remote Similarity NPD4267 Clinical (unspecified phase)
0.5875 Remote Similarity NPD15 Approved
0.5875 Remote Similarity NPD791 Approved
0.587 Remote Similarity NPD6673 Approved
0.587 Remote Similarity NPD6080 Approved
0.587 Remote Similarity NPD6904 Approved
0.5842 Remote Similarity NPD4768 Approved
0.5842 Remote Similarity NPD4767 Approved
0.5825 Remote Similarity NPD6373 Approved
0.5825 Remote Similarity NPD6372 Approved
0.5824 Remote Similarity NPD3573 Approved
0.5821 Remote Similarity NPD385 Approved
0.5821 Remote Similarity NPD384 Approved
0.5802 Remote Similarity NPD4789 Approved
0.5802 Remote Similarity NPD4244 Approved
0.5802 Remote Similarity NPD4245 Approved
0.5802 Remote Similarity NPD4787 Phase 1

  Bioactivity similarity: Similar Natural Products in NPASS

Bioactivity similarity was calculated based on bioactivity descriptors of compounds. The bioactivity descriptors were calculated by a recently developed AI algorithm Chemical Checker (CC) [Nature Biotechnology, 38:1087–1096, 2020; Nature Communications, 12:3932, 2021], which evaluated bioactivity similarities at five levels:
A: chemistry similarity;
B: biological targets similarity;
C: networks similarity;
D: cell-based bioactivity similarity;
E: similarity based on clinical data.

Those 5 categories of CC bioactivity descriptors were calculated and then subjected to manifold projection using UMAP algorithm, to project all NPs on a 2-Dimensional space. The current NP was highlighted with a small circle in the 2-D map. Below figures: left-to-right, A-to-E.

A: chemistry similarity
B: biological targets similarity
C: networks similarity
D: cell-based bioactivity similarity
E: similarity based on clinical data