Structure

Physi-Chem Properties

Molecular Weight:  568.43
Volume:  671.862
LogP:  5.611
LogD:  4.421
LogS:  -4.419
# Rotatable Bonds:  10
TPSA:  40.46
# H-Bond Aceptor:  2
# H-Bond Donor:  2
# Rings:  2
# Heavy Atoms:  2

MedChem Properties

QED Drug-Likeness Score:  0.203
Synthetic Accessibility Score:  4.96
Fsp3:  0.45
Lipinski Rule-of-5:  Rejected
Pfizer Rule:  Rejected
GSK Rule:  Rejected
BMS Rule:  1
Golden Triangle Rule:  Rejected
Chelating Alert:  0
PAINS Alert:  0

ADMET Properties (ADMETlab2.0)

ADMET: Absorption

Caco-2 Permeability:  -5.35
MDCK Permeability:  1.4917401131242514e-05
Pgp-inhibitor:  0.001
Pgp-substrate:  0.001
Human Intestinal Absorption (HIA):  0.017
20% Bioavailability (F20%):  0.011
30% Bioavailability (F30%):  0.002

ADMET: Distribution

Blood-Brain-Barrier Penetration (BBB):  0.001
Plasma Protein Binding (PPB):  102.64568328857422%
Volume Distribution (VD):  1.004
Pgp-substrate:  3.4870412349700928%

ADMET: Metabolism

CYP1A2-inhibitor:  0.442
CYP1A2-substrate:  0.902
CYP2C19-inhibitor:  0.828
CYP2C19-substrate:  0.943
CYP2C9-inhibitor:  0.695
CYP2C9-substrate:  1.0
CYP2D6-inhibitor:  0.948
CYP2D6-substrate:  0.98
CYP3A4-inhibitor:  0.865
CYP3A4-substrate:  0.512

ADMET: Excretion

Clearance (CL):  1.353
Half-life (T1/2):  0.019

ADMET: Toxicity

hERG Blockers:  0.006
Human Hepatotoxicity (H-HT):  0.059
Drug-inuced Liver Injury (DILI):  0.033
AMES Toxicity:  0.046
Rat Oral Acute Toxicity:  0.106
Maximum Recommended Daily Dose:  0.924
Skin Sensitization:  0.034
Carcinogencity:  0.048
Eye Corrosion:  0.003
Eye Irritation:  0.093
Respiratory Toxicity:  0.591

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  Natural Product: NPC171148

Natural Product ID:  NPC171148
Common Name*:   4-[(1E,3E,5E,7E,9E,11E,13E,15E,17E)-18-(4-Hydroxy-2,6,6-Trimethylcyclohex-2-En-1-Yl)-3,7,12,16-Tetramethyloctadeca-1,3,5,7,9,11,13,15,17-Nonaenyl]-3,5,5-Trimethylcyclohex-3-En-1-Ol
IUPAC Name:   4-[(1E,3E,5E,7E,9E,11E,13E,15E,17E)-18-(4-hydroxy-2,6,6-trimethylcyclohex-2-en-1-yl)-3,7,12,16-tetramethyloctadeca-1,3,5,7,9,11,13,15,17-nonaenyl]-3,5,5-trimethylcyclohex-3-en-1-ol
Synonyms:  
Standard InCHIKey:  KBPHJBAIARWVSC-DKLMTRRASA-N
Standard InCHI:  InChI=1S/C40H56O2/c1-29(17-13-19-31(3)21-23-37-33(5)25-35(41)27-39(37,7)8)15-11-12-16-30(2)18-14-20-32(4)22-24-38-34(6)26-36(42)28-40(38,9)10/h11-25,35-37,41-42H,26-28H2,1-10H3/b12-11+,17-13+,18-14+,23-21+,24-22+,29-15+,30-16+,31-19+,32-20+
SMILES:  C/C(=CC=CC=C(C=CC=C(C=CC1=C(C)CC(CC1(C)C)O)/C)/C)/C=C/C=C(/C=C/C1C(=CC(CC1(C)C)O)C)C
Synthetic Gene Cluster:   n.a.
ChEMBL Identifier:   CHEMBL1979448
PubChem CID:   5368396
Chemical Classification**:  
  • CHEMONTID:0000000 [Organic compounds]
    • [CHEMONTID:0000012] Lipids and lipid-like molecules
      • [CHEMONTID:0000259] Prenol lipids
        • [CHEMONTID:0001554] Tetraterpenoids
          • [CHEMONTID:0001277] Carotenoids
            • [CHEMONTID:0001410] Xanthophylls

*Note: the InCHIKey will be temporarily assigned as the "Common Name" if no IUPAC name or alternative short name is available.
**Note: the Chemical Classification was calculated by NPClassifier Version 1.5. Reference: PMID:34662515.

  Species Source

Organism ID Organism Name Taxonomy Level Family SuperKingdom Isolation Part Collection Location Collection Time Reference
NPO19787 Citrus sinensis Species Rutaceae Eukaryota n.a. fruit n.a. PMID[10606547]
NPO7317 Citrus aurantium Species Rutaceae Eukaryota n.a. n.a. n.a. PMID[10606602]
NPO17823 Lycium chinense Species Solanaceae Eukaryota fruits n.a. n.a. PMID[12467621]
NPO16501 Capsicum annuum Species Solanaceae Eukaryota n.a. fruit n.a. PMID[12932131]
NPO17823 Lycium chinense Species Solanaceae Eukaryota n.a. root n.a. PMID[16212233]
NPO15095 Hippophae rhamnoides Species Elaeagnaceae Eukaryota n.a. fruit n.a. PMID[16417304]
NPO15095 Hippophae rhamnoides Species Elaeagnaceae Eukaryota n.a. branch n.a. PMID[17202693]
NPO5270 Citrus natsudaidai Species Rutaceae Eukaryota n.a. n.a. n.a. PMID[17689080]
NPO16501 Capsicum annuum Species Solanaceae Eukaryota n.a. n.a. n.a. PMID[20460582]
NPO8650 Perilla frutescens Species Lamiaceae Eukaryota leaves n.a. n.a. PMID[22272932]
NPO17823 Lycium chinense Species Solanaceae Eukaryota root bark n.a. n.a. PMID[23282106]
NPO21771 Citrus trifoliata Species Rutaceae Eukaryota n.a. fruit n.a. PMID[23872723]
NPO16501 Capsicum annuum Species Solanaceae Eukaryota n.a. fruit n.a. PMID[25172746]
NPO8650 Perilla frutescens Species Lamiaceae Eukaryota n.a. n.a. n.a. PMID[25320841]
NPO17823 Lycium chinense Species Solanaceae Eukaryota Root Bark n.a. n.a. PMID[26982999]
NPO23429 Lycium barbarum Species Solanaceae Eukaryota n.a. n.a. n.a. PMID[31397570]
NPO21771 Citrus trifoliata Species Rutaceae Eukaryota n.a. n.a. n.a. PMID[32996318]
NPO16501 Capsicum annuum Species Solanaceae Eukaryota n.a. n.a. n.a. PMID[8910532]
NPO17823 Lycium chinense Species Solanaceae Eukaryota fruits n.a. n.a. PMID[9090870]
NPO15095 Hippophae rhamnoides Species Elaeagnaceae Eukaryota Root n.a. n.a. Database[FooDB]
NPO16501 Capsicum annuum Species Solanaceae Eukaryota Root n.a. n.a. Database[FooDB]
NPO19787 Citrus sinensis Species Rutaceae Eukaryota Root Bark n.a. n.a. Database[FooDB]
NPO15095 Hippophae rhamnoides Species Elaeagnaceae Eukaryota Seed n.a. n.a. Database[FooDB]
NPO16501 Capsicum annuum Species Solanaceae Eukaryota n.a. n.a. Database[FooDB]
NPO16501 Capsicum annuum Species Solanaceae Eukaryota Seed n.a. n.a. Database[FooDB]
NPO19787 Citrus sinensis Species Rutaceae Eukaryota n.a. n.a. Database[FooDB]
NPO16501 Capsicum annuum Species Solanaceae Eukaryota Tissue Culture n.a. n.a. Database[FooDB]
NPO15095 Hippophae rhamnoides Species Elaeagnaceae Eukaryota Bark n.a. n.a. Database[FooDB]
NPO15095 Hippophae rhamnoides Species Elaeagnaceae Eukaryota n.a. n.a. Database[FooDB]
NPO19787 Citrus sinensis Species Rutaceae Eukaryota Bark n.a. n.a. Database[FooDB]
NPO19787 Citrus sinensis Species Rutaceae Eukaryota n.a. n.a. Database[FooDB]
NPO15095 Hippophae rhamnoides Species Elaeagnaceae Eukaryota Fruit n.a. n.a. Database[FooDB]
NPO16501 Capsicum annuum Species Solanaceae Eukaryota Fruit n.a. n.a. Database[FooDB]
NPO19787 Citrus sinensis Species Rutaceae Eukaryota Fruit n.a. n.a. Database[FooDB]
NPO19787 Citrus sinensis Species Rutaceae Eukaryota Fruit Juice n.a. n.a. Database[FooDB]
NPO15095 Hippophae rhamnoides Species Elaeagnaceae Eukaryota Leaf n.a. n.a. Database[FooDB]
NPO16501 Capsicum annuum Species Solanaceae Eukaryota Leaf n.a. n.a. Database[FooDB]
NPO16501 Capsicum annuum Species Solanaceae Eukaryota Pericarp n.a. n.a. Database[FooDB]
NPO19787 Citrus sinensis Species Rutaceae Eukaryota Pericarp n.a. n.a. Database[FooDB]
NPO16501 Capsicum annuum Species Solanaceae Eukaryota Resin, Exudate, Sap n.a. n.a. Database[FooDB]
NPO27653 Lablab niger Species Fabaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO17823 Lycium chinense Species Solanaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO16501 Capsicum annuum Species Solanaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO15095 Hippophae rhamnoides Species Elaeagnaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO8650 Perilla frutescens Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO23429 Lycium barbarum Species Solanaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO7317 Citrus aurantium Species Rutaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO19787 Citrus sinensis Species Rutaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO21771 Citrus trifoliata Species Rutaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO19787 Citrus sinensis Species Rutaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO8650 Perilla frutescens Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO27653 Lablab niger Species Fabaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO16501 Capsicum annuum Species Solanaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO17823 Lycium chinense Species Solanaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO7317 Citrus aurantium Species Rutaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO16749 Zostera marina Species Zosteraceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO23429 Lycium barbarum Species Solanaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO15095 Hippophae rhamnoides Species Elaeagnaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO16501 Capsicum annuum Species Solanaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO8650 Perilla frutescens Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO23429 Lycium barbarum Species Solanaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO17823 Lycium chinense Species Solanaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO7317 Citrus aurantium Species Rutaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO19787 Citrus sinensis Species Rutaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO15095 Hippophae rhamnoides Species Elaeagnaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO5270 Citrus natsudaidai Species Rutaceae Eukaryota n.a. n.a. n.a. Database[Title]
NPO15095 Hippophae rhamnoides Species Elaeagnaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO17823 Lycium chinense Species Solanaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO7317 Citrus aurantium Species Rutaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO5270 Citrus natsudaidai Species Rutaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO16749 Zostera marina Species Zosteraceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO19787 Citrus sinensis Species Rutaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO21771 Citrus trifoliata Species Rutaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO23429 Lycium barbarum Species Solanaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO16501 Capsicum annuum Species Solanaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO8650 Perilla frutescens Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO16501 Capsicum annuum Species Solanaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO17823 Lycium chinense Species Solanaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO23429 Lycium barbarum Species Solanaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO27653 Lablab niger Species Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO19787 Citrus sinensis Species Rutaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO5270 Citrus natsudaidai Species Rutaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO7317 Citrus aurantium Species Rutaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO15095 Hippophae rhamnoides Species Elaeagnaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO21771 Citrus trifoliata Species Rutaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO8650 Perilla frutescens Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]

☑ Note for Reference:
In addition to directly collecting NP source organism data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated them from below databases:
UNPD: Universal Natural Products Database [PMID: 23638153].
StreptomeDB: a database of streptomycetes natural products [PMID: 33051671].
TM-MC: a database of medicinal materials and chemical compounds in Northeast Asian traditional medicine [PMID: 26156871].
TCM@Taiwan: a Traditional Chinese Medicine database [PMID: 21253603].
TCMID: a Traditional Chinese Medicine database [PMID: 29106634].
TCMSP: The traditional Chinese medicine systems pharmacology database and analysis platform [PMID: 24735618].
HerDing: a herb recommendation system to treat diseases using genes and chemicals [PMID: 26980517].
MetaboLights: a metabolomics database [PMID: 27010336].
FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].

  NP Quantity Composition/Concentration

Organism ID NP ID Organism Material Preparation Organism Part NP Quantity (Standard) NP Quantity (Minimum) NP Quantity (Maximum) Quantity Unit Reference
NPO42047 NPC171148 n.a. Seeds 3.68 ± 0.03 n.a. n.a. mg/kg of seed oil PMID[28255501]

☑ Note for Reference:
In addition to directly collecting NP quantitative data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated NP quantitative records for specific NP domains (e.g., NPS from foods or herbs) from domain-specific databases. These databases include:
DUKE: Dr. Duke's Phytochemical and Ethnobotanical Databases.
PHENOL EXPLORER: is the first comprehensive database on polyphenol content in foods [PMID: 24103452], its homepage can be accessed at here.
FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].

  Biological Activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference
NPT367 Cell Line MDA-N Homo sapiens GI50 n.a. 18663.8 nM PMID[476185]
NPT370 Cell Line NCI-H23 Homo sapiens GI50 n.a. 24660.39 nM PMID[476185]
NPT371 Cell Line UO-31 Homo sapiens GI50 n.a. 33962.53 nM PMID[476185]
NPT369 Cell Line ACHN Homo sapiens GI50 n.a. 16595.87 nM PMID[476185]
NPT116 Cell Line HL-60 Homo sapiens GI50 n.a. 51641.64 nM PMID[476185]
NPT372 Cell Line HOP-92 Homo sapiens GI50 n.a. 21428.91 nM PMID[476185]
NPT90 Cell Line DU-145 Homo sapiens GI50 n.a. 7430.19 nM PMID[476185]
NPT373 Cell Line SK-MEL-5 Homo sapiens GI50 n.a. 16634.13 nM PMID[476185]
NPT375 Cell Line Malme-3M Homo sapiens GI50 n.a. 15631.48 nM PMID[476185]
NPT111 Cell Line K562 Homo sapiens GI50 n.a. 38282.47 nM PMID[476185]
NPT377 Cell Line OVCAR-3 Homo sapiens GI50 n.a. 17298.16 nM PMID[476185]
NPT112 Cell Line MOLT-4 Homo sapiens GI50 n.a. 20892.96 nM PMID[476185]
NPT378 Cell Line NCI/ADR-RES Homo sapiens GI50 n.a. 24490.63 nM PMID[476185]
NPT382 Cell Line OVCAR-5 Homo sapiens GI50 n.a. 34833.73 nM PMID[476185]
NPT381 Cell Line OVCAR-8 Homo sapiens GI50 n.a. 19678.86 nM PMID[476185]
NPT383 Cell Line SNB-19 Homo sapiens GI50 n.a. 53210.83 nM PMID[476185]
NPT385 Cell Line SR Homo sapiens GI50 n.a. 15667.51 nM PMID[476185]
NPT82 Cell Line MDA-MB-231 Homo sapiens GI50 n.a. 13489.63 nM PMID[476185]
NPT323 Cell Line SW-620 Homo sapiens GI50 n.a. 19098.53 nM PMID[476185]
NPT384 Cell Line TK-10 Homo sapiens GI50 n.a. 57809.6 nM PMID[476185]
NPT455 Cell Line NCI-H522 Homo sapiens GI50 n.a. 15205.48 nM PMID[476185]
NPT386 Cell Line KM12 Homo sapiens GI50 n.a. 38636.7 nM PMID[476185]
NPT387 Cell Line M14 Homo sapiens GI50 n.a. 13772.09 nM PMID[476185]
NPT388 Cell Line NCI-H322M Homo sapiens GI50 n.a. 100000.0 nM PMID[476185]
NPT389 Cell Line RPMI-8226 Homo sapiens GI50 n.a. 28248.8 nM PMID[476185]
NPT456 Cell Line OVCAR-4 Homo sapiens GI50 n.a. 28773.98 nM PMID[476185]
NPT390 Cell Line LOX IMVI Homo sapiens GI50 n.a. 56104.8 nM PMID[476185]
NPT457 Cell Line BT-549 Homo sapiens GI50 n.a. 17823.79 nM PMID[476185]
NPT147 Cell Line SK-MEL-2 Homo sapiens GI50 n.a. 25003.45 nM PMID[476185]
NPT81 Cell Line A549 Homo sapiens GI50 n.a. 35645.11 nM PMID[476185]
NPT391 Cell Line HCC 2998 Homo sapiens GI50 n.a. 83946.0 nM PMID[476185]
NPT392 Cell Line SNB-75 Homo sapiens GI50 n.a. 26546.06 nM PMID[476185]
NPT148 Cell Line HCT-15 Homo sapiens GI50 n.a. 19678.86 nM PMID[476185]
NPT393 Cell Line HCT-116 Homo sapiens GI50 n.a. 15739.83 nM PMID[476185]
NPT394 Cell Line EKVX Homo sapiens GI50 n.a. 79250.13 nM PMID[476185]
NPT83 Cell Line MCF7 Homo sapiens GI50 n.a. 27733.2 nM PMID[476185]
NPT306 Cell Line PC-3 Homo sapiens GI50 n.a. 23173.95 nM PMID[476185]
NPT146 Cell Line SK-OV-3 Homo sapiens GI50 n.a. 40831.94 nM PMID[476185]
NPT396 Cell Line T47D Homo sapiens GI50 n.a. 19952.62 nM PMID[476185]
NPT397 Cell Line NCI-H460 Homo sapiens GI50 n.a. 32583.67 nM PMID[476185]
NPT398 Cell Line UACC-62 Homo sapiens GI50 n.a. 14962.36 nM PMID[476185]
NPT308 Cell Line CAKI-1 Homo sapiens GI50 n.a. 23173.95 nM PMID[476185]
NPT400 Cell Line MDA-MB-435 Homo sapiens GI50 n.a. 17538.81 nM PMID[476185]
NPT458 Cell Line IGROV-1 Homo sapiens GI50 n.a. 26546.06 nM PMID[476185]
NPT399 Cell Line SF-295 Homo sapiens GI50 n.a. 23878.11 nM PMID[476185]
NPT402 Cell Line Hs-578T Homo sapiens GI50 n.a. 80537.84 nM PMID[476185]
NPT403 Cell Line UACC-257 Homo sapiens GI50 n.a. 24888.57 nM PMID[476185]
NPT401 Cell Line 786-0 Homo sapiens GI50 n.a. 19142.56 nM PMID[476185]
NPT404 Cell Line CCRF-CEM Homo sapiens GI50 n.a. 26181.83 nM PMID[476185]
NPT405 Cell Line NCI-H226 Homo sapiens GI50 n.a. 21428.91 nM PMID[476185]
NPT170 Cell Line SK-MEL-28 Homo sapiens GI50 n.a. 17538.81 nM PMID[476185]
NPT139 Cell Line HT-29 Homo sapiens GI50 n.a. 14893.61 nM PMID[476185]
NPT406 Cell Line RXF 393 Homo sapiens GI50 n.a. 18492.69 nM PMID[476185]
NPT407 Cell Line COLO 205 Homo sapiens GI50 n.a. 20749.14 nM PMID[476185]

☑ Note for Activity Records:
☉ The quantitative biological activities were primarily integrated from ChEMBL (Version-30) database and were also directly collected from PubMed literature. PubMed PMID was provided as the reference link for each activity record.

  Chemically structural similarity: I. Similar Active Natural Products in NPASS

Top-200 similar NPs were calculated against the active-NP-set (includes 4,3285 NPs with experimentally-derived bioactivity available in NPASS)

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules. Tc lies between [0, 1] where '1' indicates the highest similarity. What is Tanimoto coefficient

●  The left chart: Distribution of similarity level between NPC171148 and all remaining natural products in the NPASS database.
●  The right table: Most similar natural products (Tc>=0.56 or Top200).

Similarity Score Similarity Level Natural Product ID
1.0 High Similarity NPC313179
1.0 High Similarity NPC69383
0.8986 High Similarity NPC45782
0.863 High Similarity NPC130665
0.8608 High Similarity NPC238485
0.8533 High Similarity NPC265588
0.8481 Intermediate Similarity NPC470384
0.8472 Intermediate Similarity NPC471560
0.8451 Intermediate Similarity NPC114651
0.8421 Intermediate Similarity NPC91594
0.8378 Intermediate Similarity NPC68443
0.8375 Intermediate Similarity NPC231310
0.8356 Intermediate Similarity NPC34834
0.8354 Intermediate Similarity NPC202389
0.8333 Intermediate Similarity NPC96362
0.8312 Intermediate Similarity NPC167891
0.8312 Intermediate Similarity NPC83351
0.8312 Intermediate Similarity NPC476314
0.8289 Intermediate Similarity NPC253190
0.8286 Intermediate Similarity NPC290367
0.8267 Intermediate Similarity NPC306727
0.8267 Intermediate Similarity NPC243342
0.8267 Intermediate Similarity NPC477138
0.8243 Intermediate Similarity NPC242001
0.8228 Intermediate Similarity NPC476646
0.8219 Intermediate Similarity NPC473893
0.8158 Intermediate Similarity NPC291503
0.8133 Intermediate Similarity NPC471799
0.8125 Intermediate Similarity NPC87489
0.8125 Intermediate Similarity NPC471408
0.8108 Intermediate Similarity NPC145498
0.8101 Intermediate Similarity NPC234193
0.8082 Intermediate Similarity NPC471238
0.8082 Intermediate Similarity NPC208999
0.8082 Intermediate Similarity NPC96484
0.8052 Intermediate Similarity NPC106432
0.8049 Intermediate Similarity NPC109528
0.8026 Intermediate Similarity NPC201048
0.8026 Intermediate Similarity NPC471797
0.8026 Intermediate Similarity NPC91858
0.8026 Intermediate Similarity NPC476366
0.8025 Intermediate Similarity NPC82538
0.8025 Intermediate Similarity NPC237795
0.8 Intermediate Similarity NPC264245
0.8 Intermediate Similarity NPC95863
0.8 Intermediate Similarity NPC477792
0.8 Intermediate Similarity NPC249423
0.8 Intermediate Similarity NPC110799
0.7975 Intermediate Similarity NPC81306
0.7975 Intermediate Similarity NPC109546
0.7975 Intermediate Similarity NPC84694
0.7975 Intermediate Similarity NPC143182
0.7975 Intermediate Similarity NPC30986
0.7975 Intermediate Similarity NPC28862
0.7975 Intermediate Similarity NPC209430
0.7975 Intermediate Similarity NPC47982
0.7973 Intermediate Similarity NPC9942
0.7949 Intermediate Similarity NPC471798
0.7949 Intermediate Similarity NPC470711
0.7949 Intermediate Similarity NPC470758
0.7945 Intermediate Similarity NPC68703
0.7945 Intermediate Similarity NPC69649
0.7922 Intermediate Similarity NPC66566
0.7922 Intermediate Similarity NPC477923
0.7901 Intermediate Similarity NPC50964
0.7901 Intermediate Similarity NPC49964
0.7901 Intermediate Similarity NPC201852
0.7895 Intermediate Similarity NPC265485
0.7895 Intermediate Similarity NPC182717
0.7895 Intermediate Similarity NPC220939
0.7875 Intermediate Similarity NPC164840
0.7875 Intermediate Similarity NPC295131
0.7875 Intermediate Similarity NPC241290
0.7875 Intermediate Similarity NPC209944
0.7867 Intermediate Similarity NPC92801
0.7867 Intermediate Similarity NPC189745
0.7867 Intermediate Similarity NPC49422
0.7867 Intermediate Similarity NPC9161
0.7848 Intermediate Similarity NPC11908
0.7848 Intermediate Similarity NPC307965
0.7848 Intermediate Similarity NPC18603
0.7848 Intermediate Similarity NPC318136
0.7848 Intermediate Similarity NPC186191
0.7848 Intermediate Similarity NPC72507
0.7848 Intermediate Similarity NPC205455
0.7848 Intermediate Similarity NPC76931
0.7848 Intermediate Similarity NPC275910
0.7848 Intermediate Similarity NPC474216
0.7838 Intermediate Similarity NPC216460
0.7821 Intermediate Similarity NPC477925
0.7821 Intermediate Similarity NPC274079
0.7821 Intermediate Similarity NPC470749
0.7821 Intermediate Similarity NPC470362
0.7816 Intermediate Similarity NPC310013
0.7808 Intermediate Similarity NPC202017
0.7808 Intermediate Similarity NPC149680
0.7805 Intermediate Similarity NPC317458
0.7805 Intermediate Similarity NPC57370
0.7792 Intermediate Similarity NPC469534
0.7792 Intermediate Similarity NPC469593
0.7792 Intermediate Similarity NPC469533
0.7778 Intermediate Similarity NPC23852
0.7778 Intermediate Similarity NPC47761
0.7778 Intermediate Similarity NPC6663
0.7778 Intermediate Similarity NPC209620
0.7778 Intermediate Similarity NPC159148
0.7763 Intermediate Similarity NPC167706
0.7763 Intermediate Similarity NPC471268
0.7763 Intermediate Similarity NPC471272
0.7763 Intermediate Similarity NPC471271
0.7763 Intermediate Similarity NPC23954
0.7738 Intermediate Similarity NPC281316
0.7738 Intermediate Similarity NPC261266
0.7733 Intermediate Similarity NPC167272
0.7733 Intermediate Similarity NPC474248
0.7733 Intermediate Similarity NPC269877
0.7722 Intermediate Similarity NPC214570
0.7722 Intermediate Similarity NPC477924
0.7714 Intermediate Similarity NPC122239
0.7711 Intermediate Similarity NPC205845
0.7711 Intermediate Similarity NPC302360
0.7692 Intermediate Similarity NPC471468
0.7692 Intermediate Similarity NPC32832
0.7683 Intermediate Similarity NPC189972
0.7683 Intermediate Similarity NPC296701
0.7683 Intermediate Similarity NPC101462
0.7683 Intermediate Similarity NPC218616
0.7671 Intermediate Similarity NPC163678
0.7671 Intermediate Similarity NPC308844
0.7654 Intermediate Similarity NPC287749
0.7654 Intermediate Similarity NPC281880
0.7654 Intermediate Similarity NPC74086
0.7647 Intermediate Similarity NPC245004
0.7639 Intermediate Similarity NPC83200
0.7625 Intermediate Similarity NPC473943
0.7625 Intermediate Similarity NPC470396
0.7625 Intermediate Similarity NPC474989
0.7625 Intermediate Similarity NPC99168
0.7625 Intermediate Similarity NPC22955
0.7619 Intermediate Similarity NPC274448
0.7619 Intermediate Similarity NPC157257
0.76 Intermediate Similarity NPC117804
0.76 Intermediate Similarity NPC32055
0.7595 Intermediate Similarity NPC129165
0.7595 Intermediate Similarity NPC134330
0.7595 Intermediate Similarity NPC113733
0.7595 Intermediate Similarity NPC202642
0.7595 Intermediate Similarity NPC321016
0.7595 Intermediate Similarity NPC321381
0.7595 Intermediate Similarity NPC107059
0.7595 Intermediate Similarity NPC73875
0.7595 Intermediate Similarity NPC46160
0.7595 Intermediate Similarity NPC247325
0.7595 Intermediate Similarity NPC244488
0.759 Intermediate Similarity NPC474634
0.759 Intermediate Similarity NPC475789
0.7586 Intermediate Similarity NPC19771
0.7568 Intermediate Similarity NPC326310
0.7568 Intermediate Similarity NPC250977
0.7568 Intermediate Similarity NPC286669
0.7568 Intermediate Similarity NPC279434
0.7568 Intermediate Similarity NPC222366
0.7568 Intermediate Similarity NPC476406
0.7568 Intermediate Similarity NPC267027
0.7568 Intermediate Similarity NPC476039
0.7564 Intermediate Similarity NPC329090
0.7564 Intermediate Similarity NPC100334
0.7564 Intermediate Similarity NPC27395
0.7561 Intermediate Similarity NPC474759
0.7561 Intermediate Similarity NPC142163
0.7561 Intermediate Similarity NPC82986
0.7561 Intermediate Similarity NPC474752
0.7561 Intermediate Similarity NPC474683
0.7561 Intermediate Similarity NPC7505
0.7561 Intermediate Similarity NPC474731
0.7561 Intermediate Similarity NPC6707
0.7558 Intermediate Similarity NPC280556
0.7558 Intermediate Similarity NPC229612
0.7558 Intermediate Similarity NPC7280
0.7536 Intermediate Similarity NPC55412
0.7536 Intermediate Similarity NPC48891
0.7536 Intermediate Similarity NPC249645
0.7534 Intermediate Similarity NPC225415
0.7534 Intermediate Similarity NPC323424
0.7534 Intermediate Similarity NPC96793
0.7532 Intermediate Similarity NPC164022
0.7531 Intermediate Similarity NPC53744
0.7531 Intermediate Similarity NPC291379
0.7531 Intermediate Similarity NPC19900
0.7531 Intermediate Similarity NPC100906
0.7529 Intermediate Similarity NPC6391
0.7528 Intermediate Similarity NPC78159
0.75 Intermediate Similarity NPC101475
0.75 Intermediate Similarity NPC157996
0.75 Intermediate Similarity NPC198968
0.75 Intermediate Similarity NPC475251
0.75 Intermediate Similarity NPC474047
0.75 Intermediate Similarity NPC34177
0.75 Intermediate Similarity NPC469728
0.75 Intermediate Similarity NPC203403

  Chemically structural similarity: II. Similar Clinical/Approved Drugs

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules.

●  The left chart: Distribution of similarity level between NPC171148 and all drugs/candidates.
●  The right table: Most similar clinical/approved drugs (Tc>=0.56 or Top200).

Similarity Score Similarity Level Drug ID Developmental Stage
1.0 High Similarity NPD8264 Approved
0.8077 Intermediate Similarity NPD7322 Clinical (unspecified phase)
0.8 Intermediate Similarity NPD7150 Approved
0.8 Intermediate Similarity NPD7152 Approved
0.8 Intermediate Similarity NPD7151 Approved
0.7875 Intermediate Similarity NPD7514 Phase 3
0.7875 Intermediate Similarity NPD7332 Phase 2
0.7867 Intermediate Similarity NPD7143 Approved
0.7867 Intermediate Similarity NPD7144 Approved
0.7848 Intermediate Similarity NPD7145 Approved
0.7778 Intermediate Similarity NPD6902 Approved
0.7733 Intermediate Similarity NPD6923 Approved
0.7733 Intermediate Similarity NPD6922 Approved
0.7722 Intermediate Similarity NPD5776 Phase 2
0.7722 Intermediate Similarity NPD6925 Approved
0.7654 Intermediate Similarity NPD8259 Clinical (unspecified phase)
0.7564 Intermediate Similarity NPD6926 Approved
0.7564 Intermediate Similarity NPD6924 Approved
0.7536 Intermediate Similarity NPD4219 Approved
0.7531 Intermediate Similarity NPD6929 Approved
0.75 Intermediate Similarity NPD6932 Approved
0.7468 Intermediate Similarity NPD6942 Approved
0.7468 Intermediate Similarity NPD7339 Approved
0.7439 Intermediate Similarity NPD6930 Phase 2
0.7439 Intermediate Similarity NPD6931 Approved
0.7375 Intermediate Similarity NPD3701 Clinical (unspecified phase)
0.7375 Intermediate Similarity NPD6933 Approved
0.7349 Intermediate Similarity NPD6898 Phase 1
0.7317 Intermediate Similarity NPD7645 Phase 2
0.726 Intermediate Similarity NPD368 Approved
0.7229 Intermediate Similarity NPD7509 Discontinued
0.7176 Intermediate Similarity NPD6695 Phase 3
0.7108 Intermediate Similarity NPD6683 Phase 2
0.7093 Intermediate Similarity NPD7338 Clinical (unspecified phase)
0.7045 Intermediate Similarity NPD4751 Clinical (unspecified phase)
0.7045 Intermediate Similarity NPD7750 Discontinued
0.7033 Intermediate Similarity NPD5778 Approved
0.7033 Intermediate Similarity NPD5779 Approved
0.7024 Intermediate Similarity NPD7525 Registered
0.7011 Intermediate Similarity NPD6893 Approved
0.7 Intermediate Similarity NPD4732 Discontinued
0.6923 Remote Similarity NPD7637 Suspended
0.6923 Remote Similarity NPD6411 Approved
0.6897 Remote Similarity NPD4786 Approved
0.686 Remote Similarity NPD3667 Approved
0.6854 Remote Similarity NPD7524 Approved
0.6824 Remote Similarity NPD4748 Discontinued
0.6818 Remote Similarity NPD1696 Phase 3
0.6813 Remote Similarity NPD7136 Phase 2
0.6742 Remote Similarity NPD5279 Phase 3
0.6707 Remote Similarity NPD4784 Approved
0.6707 Remote Similarity NPD4785 Approved
0.6703 Remote Similarity NPD5764 Clinical (unspecified phase)
0.6703 Remote Similarity NPD6101 Approved
0.6667 Remote Similarity NPD342 Phase 1
0.6588 Remote Similarity NPD5784 Clinical (unspecified phase)
0.6579 Remote Similarity NPD4194 Approved
0.6579 Remote Similarity NPD4193 Approved
0.6579 Remote Similarity NPD4191 Approved
0.6579 Remote Similarity NPD4192 Approved
0.6559 Remote Similarity NPD6079 Approved
0.6559 Remote Similarity NPD7087 Discontinued
0.6556 Remote Similarity NPD3618 Phase 1
0.6522 Remote Similarity NPD5328 Approved
0.6522 Remote Similarity NPD8262 Approved
0.6517 Remote Similarity NPD6400 Clinical (unspecified phase)
0.6463 Remote Similarity NPD4243 Approved
0.6429 Remote Similarity NPD8039 Approved
0.641 Remote Similarity NPD5325 Clinical (unspecified phase)
0.6383 Remote Similarity NPD7515 Phase 2
0.6333 Remote Similarity NPD3665 Phase 1
0.6333 Remote Similarity NPD3666 Approved
0.6333 Remote Similarity NPD3133 Approved
0.6327 Remote Similarity NPD4225 Approved
0.6263 Remote Similarity NPD7639 Approved
0.6263 Remote Similarity NPD7640 Approved
0.625 Remote Similarity NPD4822 Approved
0.625 Remote Similarity NPD4820 Approved
0.625 Remote Similarity NPD7748 Approved
0.625 Remote Similarity NPD4821 Approved
0.625 Remote Similarity NPD4819 Approved
0.6234 Remote Similarity NPD4246 Clinical (unspecified phase)
0.6222 Remote Similarity NPD5362 Discontinued
0.6222 Remote Similarity NPD5332 Approved
0.6222 Remote Similarity NPD5331 Approved
0.6207 Remote Similarity NPD4268 Approved
0.6207 Remote Similarity NPD4271 Approved
0.6196 Remote Similarity NPD4623 Approved
0.6196 Remote Similarity NPD4519 Discontinued
0.618 Remote Similarity NPD4790 Discontinued
0.6162 Remote Similarity NPD7638 Approved
0.6154 Remote Similarity NPD3668 Phase 3
0.6146 Remote Similarity NPD4202 Approved
0.6146 Remote Similarity NPD6399 Phase 3
0.6139 Remote Similarity NPD5211 Phase 2
0.6136 Remote Similarity NPD4195 Approved
0.6122 Remote Similarity NPD5221 Approved
0.6122 Remote Similarity NPD5222 Approved
0.6122 Remote Similarity NPD5220 Clinical (unspecified phase)
0.6111 Remote Similarity NPD4269 Approved
0.6111 Remote Similarity NPD4270 Approved
0.6087 Remote Similarity NPD4265 Approved
0.6067 Remote Similarity NPD4252 Approved
0.6067 Remote Similarity NPD4695 Discontinued
0.6067 Remote Similarity NPD5790 Clinical (unspecified phase)
0.6064 Remote Similarity NPD4518 Approved
0.6061 Remote Similarity NPD7902 Approved
0.6061 Remote Similarity NPD5173 Approved
0.6047 Remote Similarity NPD5275 Approved
0.6047 Remote Similarity NPD4190 Phase 3
0.6044 Remote Similarity NPD7154 Phase 3
0.6042 Remote Similarity NPD7983 Approved
0.6022 Remote Similarity NPD4694 Approved
0.6022 Remote Similarity NPD5280 Approved
0.6019 Remote Similarity NPD5141 Approved
0.6 Remote Similarity NPD5290 Discontinued
0.6 Remote Similarity NPD8029 Clinical (unspecified phase)
0.6 Remote Similarity NPD7285 Clinical (unspecified phase)
0.5962 Remote Similarity NPD6640 Phase 3
0.596 Remote Similarity NPD7839 Suspended
0.596 Remote Similarity NPD4697 Phase 3
0.5941 Remote Similarity NPD6648 Approved
0.5941 Remote Similarity NPD5285 Approved
0.5941 Remote Similarity NPD5286 Approved
0.5941 Remote Similarity NPD4696 Approved
0.5938 Remote Similarity NPD4001 Clinical (unspecified phase)
0.5938 Remote Similarity NPD7838 Discovery
0.5938 Remote Similarity NPD5785 Approved
0.593 Remote Similarity NPD4687 Approved
0.593 Remote Similarity NPD5733 Approved
0.5914 Remote Similarity NPD5363 Approved
0.5914 Remote Similarity NPD7520 Clinical (unspecified phase)
0.59 Remote Similarity NPD4755 Approved
0.5882 Remote Similarity NPD5276 Approved
0.5882 Remote Similarity NPD5344 Discontinued
0.5882 Remote Similarity NPD5223 Approved
0.5876 Remote Similarity NPD5281 Approved
0.5876 Remote Similarity NPD5284 Approved
0.5856 Remote Similarity NPD7115 Discovery
0.5851 Remote Similarity NPD5786 Approved
0.5851 Remote Similarity NPD5690 Phase 2
0.5833 Remote Similarity NPD4753 Phase 2
0.5833 Remote Similarity NPD6051 Approved
0.5825 Remote Similarity NPD5226 Approved
0.5825 Remote Similarity NPD4633 Approved
0.5825 Remote Similarity NPD5224 Approved
0.5825 Remote Similarity NPD5225 Approved
0.581 Remote Similarity NPD7333 Discontinued
0.5784 Remote Similarity NPD4700 Approved
0.5784 Remote Similarity NPD6404 Discontinued
0.5783 Remote Similarity NPD4247 Clinical (unspecified phase)
0.5773 Remote Similarity NPD4096 Approved
0.5769 Remote Similarity NPD5174 Approved
0.5769 Remote Similarity NPD5175 Approved
0.5769 Remote Similarity NPD5700 Clinical (unspecified phase)
0.5761 Remote Similarity NPD4221 Approved
0.5761 Remote Similarity NPD4223 Phase 3
0.5758 Remote Similarity NPD7901 Clinical (unspecified phase)
0.5758 Remote Similarity NPD7900 Approved
0.5747 Remote Similarity NPD4058 Approved
0.5745 Remote Similarity NPD5329 Approved
0.5728 Remote Similarity NPD4159 Approved
0.5702 Remote Similarity NPD7741 Discontinued
0.5702 Remote Similarity NPD3091 Approved
0.5701 Remote Similarity NPD6881 Approved
0.5701 Remote Similarity NPD6899 Approved
0.57 Remote Similarity NPD5210 Approved
0.57 Remote Similarity NPD4629 Approved
0.5699 Remote Similarity NPD6110 Phase 1
0.5688 Remote Similarity NPD8130 Phase 1
0.5684 Remote Similarity NPD5330 Approved
0.5684 Remote Similarity NPD6684 Approved
0.5684 Remote Similarity NPD7146 Approved
0.5684 Remote Similarity NPD6409 Approved
0.5684 Remote Similarity NPD7521 Approved
0.5684 Remote Similarity NPD7334 Approved
0.5673 Remote Similarity NPD7632 Discontinued
0.5663 Remote Similarity NPD7331 Phase 2
0.566 Remote Similarity NPD7128 Approved
0.566 Remote Similarity NPD6402 Approved
0.566 Remote Similarity NPD5739 Approved
0.566 Remote Similarity NPD6675 Approved
0.5652 Remote Similarity NPD5369 Approved
0.5647 Remote Similarity NPD15 Approved
0.5647 Remote Similarity NPD791 Approved
0.5638 Remote Similarity NPD4197 Approved
0.5636 Remote Similarity NPD8297 Approved
0.5625 Remote Similarity NPD4251 Approved
0.5625 Remote Similarity NPD4250 Approved
0.5619 Remote Similarity NPD4754 Approved
0.5618 Remote Similarity NPD1346 Approved
0.5607 Remote Similarity NPD5697 Approved

  Bioactivity similarity: Similar Natural Products in NPASS

Bioactivity similarity was calculated based on bioactivity descriptors of compounds. The bioactivity descriptors were calculated by a recently developed AI algorithm Chemical Checker (CC) [Nature Biotechnology, 38:1087–1096, 2020; Nature Communications, 12:3932, 2021], which evaluated bioactivity similarities at five levels:
A: chemistry similarity;
B: biological targets similarity;
C: networks similarity;
D: cell-based bioactivity similarity;
E: similarity based on clinical data.

Those 5 categories of CC bioactivity descriptors were calculated and then subjected to manifold projection using UMAP algorithm, to project all NPs on a 2-Dimensional space. The current NP was highlighted with a small circle in the 2-D map. Below figures: left-to-right, A-to-E.

A: chemistry similarity
B: biological targets similarity
C: networks similarity
D: cell-based bioactivity similarity
E: similarity based on clinical data