Structure

Physi-Chem Properties

Molecular Weight:  248.14
Volume:  266.708
LogP:  2.371
LogD:  2.106
LogS:  -2.712
# Rotatable Bonds:  3
TPSA:  43.37
# H-Bond Aceptor:  3
# H-Bond Donor:  0
# Rings:  2
# Heavy Atoms:  3

MedChem Properties

QED Drug-Likeness Score:  0.438
Synthetic Accessibility Score:  4.117
Fsp3:  0.6
Lipinski Rule-of-5:  Accepted
Pfizer Rule:  Accepted
GSK Rule:  Accepted
BMS Rule:  2
Golden Triangle Rule:  Accepted
Chelating Alert:  0
PAINS Alert:  0

ADMET Properties (ADMETlab2.0)

ADMET: Absorption

Caco-2 Permeability:  -4.56
MDCK Permeability:  2.369832873228006e-05
Pgp-inhibitor:  0.003
Pgp-substrate:  0.0
Human Intestinal Absorption (HIA):  0.024
20% Bioavailability (F20%):  0.073
30% Bioavailability (F30%):  0.027

ADMET: Distribution

Blood-Brain-Barrier Penetration (BBB):  0.098
Plasma Protein Binding (PPB):  89.67510223388672%
Volume Distribution (VD):  1.218
Pgp-substrate:  9.66836929321289%

ADMET: Metabolism

CYP1A2-inhibitor:  0.352
CYP1A2-substrate:  0.148
CYP2C19-inhibitor:  0.289
CYP2C19-substrate:  0.285
CYP2C9-inhibitor:  0.258
CYP2C9-substrate:  0.639
CYP2D6-inhibitor:  0.026
CYP2D6-substrate:  0.467
CYP3A4-inhibitor:  0.353
CYP3A4-substrate:  0.251

ADMET: Excretion

Clearance (CL):  7.761
Half-life (T1/2):  0.701

ADMET: Toxicity

hERG Blockers:  0.007
Human Hepatotoxicity (H-HT):  0.278
Drug-inuced Liver Injury (DILI):  0.483
AMES Toxicity:  0.073
Rat Oral Acute Toxicity:  0.133
Maximum Recommended Daily Dose:  0.898
Skin Sensitization:  0.314
Carcinogencity:  0.933
Eye Corrosion:  0.564
Eye Irritation:  0.853
Respiratory Toxicity:  0.929

Download Data

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General Info & Identifiers & Properties  
Structure MOL file  
Source Organisms  
Biological Activities  
Similar NPs/Drugs  

  Natural Product: NPC138374

Natural Product ID:  NPC138374
Common Name*:   3-Epi-Taraxerol
IUPAC Name:   (3R,4aR,6aR,6aS,8aR,12aR,14aR,14bR)-4,4,6a,6a,8a,11,11,14b-octamethyl-1,2,3,4a,5,6,8,9,10,12,12a,13,14,14a-tetradecahydropicen-3-ol
Synonyms:   3-Epi-Taraxerol
Standard InCHIKey:  GGGUGZHBAOMSFJ-VONAQYPGSA-N
Standard InCHI:  InChI=1S/C30H50O/c1-25(2)17-18-27(5)13-9-21-29(7)14-10-20-26(3,4)24(31)12-16-28(20,6)22(29)11-15-30(21,8)23(27)19-25/h9,20,22-24,31H,10-19H2,1-8H3/t20-,22+,23+,24+,27-,28-,29-,30+/m0/s1
SMILES:  O[C@@H]1CC[C@]2([C@H](C1(C)C)CC[C@@]1([C@@H]2CC[C@@]2(C1=CC[C@@]1([C@H]2CC(C)(C)CC1)C)C)C)C
Synthetic Gene Cluster:   n.a.
ChEMBL Identifier:   CHEMBL470462
PubChem CID:   12443227
Chemical Classification**:  
  • CHEMONTID:0000000 [Organic compounds]
    • [CHEMONTID:0000012] Lipids and lipid-like molecules
      • [CHEMONTID:0000259] Prenol lipids
        • [CHEMONTID:0001552] Sesterterpenoids
          • [CHEMONTID:0002883] Scalarane sesterterpenoids

*Note: the InCHIKey will be temporarily assigned as the "Common Name" if no IUPAC name or alternative short name is available.
**Note: the Chemical Classification was calculated by NPClassifier Version 1.5. Reference: PMID:34662515.

  Species Source

Organism ID Organism Name Taxonomy Level Family SuperKingdom Isolation Part Collection Location Collection Time Reference
NPO20652 Phytolacca acinosa Species Phytolaccaceae Eukaryota n.a. n.a. n.a. PMID[12932140]
NPO13278 Strychnos spinosa Species Loganiaceae Eukaryota Leaves n.a. n.a. PMID[17637068]
NPO15233 Balanophora japonica Species Balanophoraceae Eukaryota n.a. n.a. n.a. PMID[18302336]
NPO8584 Schisandra arisanensis Species Schisandraceae Eukaryota fruits n.a. n.a. PMID[19673515]
NPO8584 Schisandra arisanensis Species Schisandraceae Eukaryota fruits n.a. n.a. PMID[20536188]
NPO5470 Cynoglossum amabile Species Boraginaceae Eukaryota n.a. n.a. n.a. PMID[22432912]
NPO8584 Schisandra arisanensis Species Schisandraceae Eukaryota fruits n.a. n.a. PMID[23265871]
NPO2330 Alchornea cordifolia Species Euphorbiaceae Eukaryota n.a. root n.a. PMID[26724423]
NPO2330 Alchornea cordifolia Species Euphorbiaceae Eukaryota n.a. stem n.a. PMID[26724423]
NPO6545 Artemisia sieversiana Species Asteraceae Eukaryota Aerial Parts n.a. n.a. PMID[29122483]
NPO20288 Polytolypa hystricis Species Onygenaceae Eukaryota n.a. n.a. n.a. PMID[8691217]
NPO1653 Streptomyces longissimus Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[903851]
NPO21582 Manihot esculenta Species Euphorbiaceae Eukaryota n.a. n.a. Database[FooDB]
NPO21582 Manihot esculenta Species Euphorbiaceae Eukaryota Leaf n.a. n.a. Database[FooDB]
NPO21582 Manihot esculenta Species Euphorbiaceae Eukaryota Root n.a. n.a. Database[FooDB]
NPO21582 Manihot esculenta Species Euphorbiaceae Eukaryota Tubers n.a. Database[FooDB]
NPO13278 Strychnos spinosa Species Loganiaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO5470 Cynoglossum amabile Species Boraginaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO19139 Senecio polyodon Species Asteraceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO20846 Sophora japonica Species Fabaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO6545 Artemisia sieversiana Species Asteraceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO8198 Podocarpus montanus Species Podocarpaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO8584 Schisandra arisanensis Species Schisandraceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO15233 Balanophora japonica Species Balanophoraceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO1034 Ophiorrhiza liukiuensis Species Rubiaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO21582 Manihot esculenta Species Euphorbiaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO4080 Salix purpurea Species Salicaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO118 Ustilago maydis Species Ustilaginaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO21582 Manihot esculenta Species Euphorbiaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO20846 Sophora japonica Species Fabaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO20652 Phytolacca acinosa Species Phytolaccaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO5470 Cynoglossum amabile Species Boraginaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO1034 Ophiorrhiza liukiuensis Species Rubiaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO19139 Senecio polyodon Species Asteraceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO10098 Glycosmis pseudoracemosa Species Rutaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO8198 Podocarpus montanus Species Podocarpaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO4080 Salix purpurea Species Salicaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO13278 Strychnos spinosa Species Loganiaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO12487 Juniperus horizontalis Species Cupressaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO118 Ustilago maydis Species Ustilaginaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO22294 Pteris inaequalis Species Pteridaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO15233 Balanophora japonica Species Balanophoraceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO15478 Senna sophera Species Fabaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO23772 Tetradium glabrifolium Species Rutaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO6545 Artemisia sieversiana Species Asteraceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO8584 Schisandra arisanensis Species Schisandraceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO8198 Podocarpus montanus Species Podocarpaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO6545 Artemisia sieversiana Species Asteraceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO20846 Sophora japonica Species Fabaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO4080 Salix purpurea Species Salicaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO5470 Cynoglossum amabile Species Boraginaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO20652 Phytolacca acinosa Species Phytolaccaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO20846 Sophora japonica Species Fabaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO20652 Phytolacca acinosa Species Phytolaccaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO15145 Rauvolfia salicifolia Species Apocynaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO6906 Atalantia wightii Species Rutaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO22871 Aster alpinus Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO3965 Corynanthe pachyceras Species Rubiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO4080 Salix purpurea Species Salicaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO4506 Corydalis paniculigera Species Papaveraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO20652 Phytolacca acinosa Species Phytolaccaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO3761 Plectosphaerella cucumerina Species Plectosphaerellaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO21951 Paramignya griffithii Species Rutaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO20592 Rhodoglossum japonicum Species Gigartinaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO23353 [polyangium] brachysporum Species n.a. Bacteria n.a. n.a. n.a. Database[UNPD]
NPO23025 Roccellaria mollis Species Roccellaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO2178 Cachrys trifida Species Apiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO11430 Inula grantioides Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO22529 Calceolaria thyrsiflora Species Calceolariaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO118 Ustilago maydis Species Ustilaginaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO13278 Strychnos spinosa Species Loganiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO16801 Cota tinctoria Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO10098 Glycosmis pseudoracemosa Species Rutaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO20846 Sophora japonica Species Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO6545 Artemisia sieversiana Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO5427 Sabal peregrina Species Arecaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO21582 Manihot esculenta Species Euphorbiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO21822 Berberis crataegina Species Berberidaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO15233 Balanophora japonica Species Balanophoraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO1653 Streptomyces longissimus Species Streptomycetaceae Bacteria n.a. n.a. n.a. Database[UNPD]
NPO18873.2 Salmonella enterica subsp. enterica serovar bovismorbificans Subspecies Enterobacteriaceae Bacteria n.a. n.a. n.a. Database[UNPD]
NPO20288 Polytolypa hystricis Species Onygenaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO1759 Alexandrium excavatum Species Gonyaulacaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO20015 Echinocystis lobata Species Cucurbitaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO9978 Indigofera microcarpa Species Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO22927 Xanthoparmelia pokornyi Species Parmeliaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO15329 Rhizoplaca baranowii Species Lecanoraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO8198 Podocarpus montanus Species Podocarpaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO14526 Plectranthus caninus Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO9332 Corydalis longipes Species Papaveraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO23772 Tetradium glabrifolium Species Rutaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO15839 Nicotiana repanda Species Solanaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO15478 Senna sophera Species Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO18684 Calophyllum thwaitesii Species Calophyllaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO22294 Pteris inaequalis Species Pteridaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO22812 Acacia cambagei Species Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO22711 Athanasia dregeana Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO13848 Amomum daniellii Species Zingiberaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO19139 Senecio polyodon Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO13647 Calcarisporium thermophilum Species n.a. Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO22650 Helenium quadridentatum Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO8775 Streptomyces rubellomurinus Species Streptomycetaceae Bacteria n.a. n.a. n.a. Database[UNPD]
NPO2330 Alchornea cordifolia Species Euphorbiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO11064 Haemanthus toxicarius Species Amaryllidaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO5398 Peucedanum oroselinum Species Apiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO6048 Sarcodictyon roseum n.a. n.a. n.a. n.a. n.a. n.a. Database[UNPD]
NPO28078 Melaleuca decora Species Myrtaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO22599 Crataegus pontica Species Rosaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO1034 Ophiorrhiza liukiuensis Species Rubiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO21530 Arnica viscosa Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO1109 Corydalis persica Species Papaveraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO7521 Hygrophorus eburneus Species Hygrophoraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO5470 Cynoglossum amabile Species Boraginaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO23952 Phlomoides medicinalis Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO8584 Schisandra arisanensis Species Schisandraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO28627.1 Coptis trifolia subsp. groenlandica Subspecies Ranunculaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO21101 Felicia amelloides Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO16711 Baccharis solieri Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO21368 Tricholoma batschii Species Tricholomataceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO14947 Lathyrus tingitanus Species Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO12487 Juniperus horizontalis Species Cupressaceae Eukaryota n.a. n.a. n.a. Database[UNPD]

☑ Note for Reference:
In addition to directly collecting NP source organism data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated them from below databases:
UNPD: Universal Natural Products Database [PMID: 23638153].
StreptomeDB: a database of streptomycetes natural products [PMID: 33051671].
TM-MC: a database of medicinal materials and chemical compounds in Northeast Asian traditional medicine [PMID: 26156871].
TCM@Taiwan: a Traditional Chinese Medicine database [PMID: 21253603].
TCMID: a Traditional Chinese Medicine database [PMID: 29106634].
TCMSP: The traditional Chinese medicine systems pharmacology database and analysis platform [PMID: 24735618].
HerDing: a herb recommendation system to treat diseases using genes and chemicals [PMID: 26980517].
MetaboLights: a metabolomics database [PMID: 27010336].
FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].

  NP Quantity Composition/Concentration

Organism ID NP ID Organism Material Preparation Organism Part NP Quantity (Standard) NP Quantity (Minimum) NP Quantity (Maximum) Quantity Unit Reference

☑ Note for Reference:
In addition to directly collecting NP quantitative data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated NP quantitative records for specific NP domains (e.g., NPS from foods or herbs) from domain-specific databases. These databases include:
DUKE: Dr. Duke's Phytochemical and Ethnobotanical Databases.
PHENOL EXPLORER: is the first comprehensive database on polyphenol content in foods [PMID: 24103452], its homepage can be accessed at here.
FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].

  Biological Activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference
NPT179 Cell Line A2780 Homo sapiens IC50 = 24.4 ug.mL-1 PMID[511905]

☑ Note for Activity Records:
☉ The quantitative biological activities were primarily integrated from ChEMBL (Version-30) database and were also directly collected from PubMed literature. PubMed PMID was provided as the reference link for each activity record.

  Chemically structural similarity: I. Similar Active Natural Products in NPASS

Top-200 similar NPs were calculated against the active-NP-set (includes 4,3285 NPs with experimentally-derived bioactivity available in NPASS)

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules. Tc lies between [0, 1] where '1' indicates the highest similarity. What is Tanimoto coefficient

●  The left chart: Distribution of similarity level between NPC138374 and all remaining natural products in the NPASS database.
●  The right table: Most similar natural products (Tc>=0.56 or Top200).

Similarity Score Similarity Level Natural Product ID
1.0 High Similarity NPC34700
0.9857 High Similarity NPC30590
0.9857 High Similarity NPC122418
0.9857 High Similarity NPC120098
0.9857 High Similarity NPC290598
0.9857 High Similarity NPC265328
0.9857 High Similarity NPC27765
0.9718 High Similarity NPC101475
0.9718 High Similarity NPC40394
0.9718 High Similarity NPC157996
0.9718 High Similarity NPC34177
0.9583 High Similarity NPC230295
0.9583 High Similarity NPC98386
0.9583 High Similarity NPC158662
0.9583 High Similarity NPC196753
0.9583 High Similarity NPC300499
0.9583 High Similarity NPC474989
0.9583 High Similarity NPC99168
0.9583 High Similarity NPC22955
0.9583 High Similarity NPC470396
0.9583 High Similarity NPC253807
0.9577 High Similarity NPC106364
0.9571 High Similarity NPC100334
0.9452 High Similarity NPC291379
0.9452 High Similarity NPC53744
0.9324 High Similarity NPC295131
0.9315 High Similarity NPC72507
0.92 High Similarity NPC116202
0.92 High Similarity NPC242350
0.9178 High Similarity NPC90979
0.9178 High Similarity NPC472805
0.9155 High Similarity NPC182717
0.9079 High Similarity NPC304285
0.9079 High Similarity NPC47763
0.9014 High Similarity NPC110799
0.9014 High Similarity NPC301226
0.8961 High Similarity NPC253402
0.8961 High Similarity NPC159168
0.8889 High Similarity NPC211009
0.8846 High Similarity NPC238992
0.8784 High Similarity NPC237460
0.8784 High Similarity NPC189883
0.8784 High Similarity NPC106432
0.8767 High Similarity NPC477138
0.8767 High Similarity NPC243342
0.8767 High Similarity NPC91858
0.875 High Similarity NPC167706
0.8734 High Similarity NPC191965
0.8734 High Similarity NPC133954
0.8718 High Similarity NPC237795
0.8718 High Similarity NPC82538
0.8667 High Similarity NPC470758
0.8667 High Similarity NPC470711
0.8667 High Similarity NPC471798
0.8649 High Similarity NPC141071
0.8649 High Similarity NPC66566
0.8649 High Similarity NPC477923
0.8649 High Similarity NPC291503
0.8649 High Similarity NPC144075
0.8649 High Similarity NPC471723
0.8649 High Similarity NPC257347
0.863 High Similarity NPC471799
0.8625 High Similarity NPC235341
0.8625 High Similarity NPC137306
0.8625 High Similarity NPC475862
0.8625 High Similarity NPC72638
0.8625 High Similarity NPC237344
0.8625 High Similarity NPC95594
0.8625 High Similarity NPC74363
0.8625 High Similarity NPC213412
0.8625 High Similarity NPC477579
0.8625 High Similarity NPC84121
0.8611 High Similarity NPC145498
0.8592 High Similarity NPC208999
0.8592 High Similarity NPC94192
0.859 High Similarity NPC248886
0.8553 High Similarity NPC85346
0.8553 High Similarity NPC6978
0.8553 High Similarity NPC244385
0.8553 High Similarity NPC302041
0.8553 High Similarity NPC285761
0.8553 High Similarity NPC312328
0.8553 High Similarity NPC138621
0.8553 High Similarity NPC167037
0.8553 High Similarity NPC65897
0.8533 High Similarity NPC240604
0.8533 High Similarity NPC300324
0.8533 High Similarity NPC129165
0.8533 High Similarity NPC202642
0.8533 High Similarity NPC470749
0.8533 High Similarity NPC134330
0.8533 High Similarity NPC46160
0.8519 High Similarity NPC242468
0.8519 High Similarity NPC171203
0.8519 High Similarity NPC293564
0.8519 High Similarity NPC307426
0.8519 High Similarity NPC102683
0.8519 High Similarity NPC88716
0.8519 High Similarity NPC68160
0.8519 High Similarity NPC142415
0.8519 High Similarity NPC51700
0.8519 High Similarity NPC18064
0.8519 High Similarity NPC73064
0.8519 High Similarity NPC130577
0.8519 High Similarity NPC98442
0.8514 High Similarity NPC62657
0.8514 High Similarity NPC471797
0.8514 High Similarity NPC25511
0.8514 High Similarity NPC192638
0.85 High Similarity NPC477578
0.8493 Intermediate Similarity NPC242001
0.8472 Intermediate Similarity NPC210323
0.8451 Intermediate Similarity NPC197805
0.8442 Intermediate Similarity NPC1319
0.8442 Intermediate Similarity NPC273410
0.8442 Intermediate Similarity NPC472463
0.8442 Intermediate Similarity NPC80530
0.8421 Intermediate Similarity NPC130136
0.8421 Intermediate Similarity NPC214570
0.8421 Intermediate Similarity NPC91594
0.8421 Intermediate Similarity NPC477924
0.8415 Intermediate Similarity NPC181225
0.8415 Intermediate Similarity NPC40552
0.8415 Intermediate Similarity NPC17733
0.8415 Intermediate Similarity NPC246708
0.8415 Intermediate Similarity NPC474512
0.8415 Intermediate Similarity NPC470629
0.8415 Intermediate Similarity NPC290690
0.8415 Intermediate Similarity NPC182797
0.8415 Intermediate Similarity NPC52169
0.8415 Intermediate Similarity NPC473242
0.84 Intermediate Similarity NPC285893
0.84 Intermediate Similarity NPC28657
0.84 Intermediate Similarity NPC322353
0.84 Intermediate Similarity NPC212879
0.84 Intermediate Similarity NPC136188
0.84 Intermediate Similarity NPC304309
0.84 Intermediate Similarity NPC230301
0.84 Intermediate Similarity NPC22105
0.84 Intermediate Similarity NPC121744
0.84 Intermediate Similarity NPC162742
0.84 Intermediate Similarity NPC118508
0.84 Intermediate Similarity NPC288035
0.84 Intermediate Similarity NPC240235
0.84 Intermediate Similarity NPC134847
0.84 Intermediate Similarity NPC104387
0.84 Intermediate Similarity NPC231256
0.84 Intermediate Similarity NPC178383
0.8378 Intermediate Similarity NPC201373
0.8375 Intermediate Similarity NPC180834
0.8375 Intermediate Similarity NPC209802
0.8356 Intermediate Similarity NPC45296
0.8356 Intermediate Similarity NPC92801
0.8354 Intermediate Similarity NPC20853
0.8333 Intermediate Similarity NPC322313
0.8333 Intermediate Similarity NPC236237
0.8333 Intermediate Similarity NPC102253
0.8333 Intermediate Similarity NPC2648
0.8333 Intermediate Similarity NPC13554
0.8333 Intermediate Similarity NPC32055
0.8333 Intermediate Similarity NPC236112
0.8313 Intermediate Similarity NPC59263
0.8313 Intermediate Similarity NPC198664
0.8313 Intermediate Similarity NPC127689
0.8313 Intermediate Similarity NPC121798
0.8313 Intermediate Similarity NPC263393
0.8313 Intermediate Similarity NPC259875
0.8313 Intermediate Similarity NPC61543
0.8313 Intermediate Similarity NPC225585
0.8313 Intermediate Similarity NPC187785
0.8313 Intermediate Similarity NPC161751
0.8313 Intermediate Similarity NPC470588
0.8313 Intermediate Similarity NPC25906
0.8313 Intermediate Similarity NPC95246
0.8313 Intermediate Similarity NPC143232
0.8313 Intermediate Similarity NPC474972
0.8313 Intermediate Similarity NPC293048
0.8313 Intermediate Similarity NPC130520
0.8313 Intermediate Similarity NPC234346
0.8313 Intermediate Similarity NPC64872
0.8313 Intermediate Similarity NPC270768
0.8313 Intermediate Similarity NPC69627
0.8313 Intermediate Similarity NPC290972
0.8313 Intermediate Similarity NPC274330
0.8312 Intermediate Similarity NPC11908
0.8312 Intermediate Similarity NPC148977
0.8312 Intermediate Similarity NPC186191
0.8312 Intermediate Similarity NPC318136
0.8312 Intermediate Similarity NPC275910
0.8312 Intermediate Similarity NPC205455
0.831 Intermediate Similarity NPC476039
0.831 Intermediate Similarity NPC286669
0.831 Intermediate Similarity NPC222366
0.8289 Intermediate Similarity NPC477925
0.8289 Intermediate Similarity NPC278091
0.8289 Intermediate Similarity NPC73875
0.8289 Intermediate Similarity NPC86305
0.8289 Intermediate Similarity NPC93662
0.8289 Intermediate Similarity NPC14112
0.8289 Intermediate Similarity NPC265588

  Chemically structural similarity: II. Similar Clinical/Approved Drugs

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules.

●  The left chart: Distribution of similarity level between NPC138374 and all drugs/candidates.
●  The right table: Most similar clinical/approved drugs (Tc>=0.56 or Top200).

Similarity Score Similarity Level Drug ID Developmental Stage
0.9452 High Similarity NPD7645 Phase 2
0.84 Intermediate Similarity NPD7339 Approved
0.84 Intermediate Similarity NPD6942 Approved
0.8333 Intermediate Similarity NPD7525 Registered
0.8118 Intermediate Similarity NPD7515 Phase 2
0.8052 Intermediate Similarity NPD3701 Clinical (unspecified phase)
0.7727 Intermediate Similarity NPD7748 Approved
0.7532 Intermediate Similarity NPD4243 Approved
0.7529 Intermediate Similarity NPD3618 Phase 1
0.75 Intermediate Similarity NPD4786 Approved
0.7473 Intermediate Similarity NPD7902 Approved
0.7471 Intermediate Similarity NPD5328 Approved
0.747 Intermediate Similarity NPD3667 Approved
0.7412 Intermediate Similarity NPD7520 Clinical (unspecified phase)
0.7342 Intermediate Similarity NPD4784 Approved
0.7342 Intermediate Similarity NPD6924 Approved
0.7342 Intermediate Similarity NPD4785 Approved
0.7342 Intermediate Similarity NPD6926 Approved
0.7308 Intermediate Similarity NPD7152 Approved
0.7308 Intermediate Similarity NPD7151 Approved
0.7308 Intermediate Similarity NPD7150 Approved
0.7303 Intermediate Similarity NPD6079 Approved
0.7273 Intermediate Similarity NPD6923 Approved
0.7273 Intermediate Similarity NPD6922 Approved
0.725 Intermediate Similarity NPD8264 Approved
0.7229 Intermediate Similarity NPD4748 Discontinued
0.7179 Intermediate Similarity NPD7143 Approved
0.7179 Intermediate Similarity NPD7144 Approved
0.716 Intermediate Similarity NPD6933 Approved
0.7143 Intermediate Similarity NPD7900 Approved
0.7143 Intermediate Similarity NPD7901 Clinical (unspecified phase)
0.7093 Intermediate Similarity NPD3133 Approved
0.7093 Intermediate Similarity NPD3666 Approved
0.7093 Intermediate Similarity NPD3665 Phase 1
0.7045 Intermediate Similarity NPD4751 Clinical (unspecified phase)
0.7037 Intermediate Similarity NPD5275 Approved
0.7037 Intermediate Similarity NPD4190 Phase 3
0.7033 Intermediate Similarity NPD4202 Approved
0.7024 Intermediate Similarity NPD7509 Discontinued
0.6905 Remote Similarity NPD6929 Approved
0.6842 Remote Similarity NPD7638 Approved
0.6835 Remote Similarity NPD4267 Clinical (unspecified phase)
0.6824 Remote Similarity NPD6930 Phase 2
0.6824 Remote Similarity NPD6931 Approved
0.6809 Remote Similarity NPD4697 Phase 3
0.6809 Remote Similarity NPD5222 Approved
0.6809 Remote Similarity NPD5220 Clinical (unspecified phase)
0.6809 Remote Similarity NPD5221 Approved
0.6771 Remote Similarity NPD7639 Approved
0.6771 Remote Similarity NPD7640 Approved
0.6739 Remote Similarity NPD8035 Phase 2
0.6739 Remote Similarity NPD8034 Phase 2
0.6737 Remote Similarity NPD5173 Approved
0.6737 Remote Similarity NPD4755 Approved
0.6706 Remote Similarity NPD4195 Approved
0.6705 Remote Similarity NPD3668 Phase 3
0.6703 Remote Similarity NPD7285 Clinical (unspecified phase)
0.6667 Remote Similarity NPD5776 Phase 2
0.6667 Remote Similarity NPD6399 Phase 3
0.6667 Remote Similarity NPD5290 Discontinued
0.6667 Remote Similarity NPD6932 Approved
0.6667 Remote Similarity NPD6925 Approved
0.6598 Remote Similarity NPD5285 Approved
0.6598 Remote Similarity NPD4700 Approved
0.6598 Remote Similarity NPD4696 Approved
0.6598 Remote Similarity NPD5286 Approved
0.6593 Remote Similarity NPD7513 Clinical (unspecified phase)
0.6591 Remote Similarity NPD6695 Phase 3
0.6588 Remote Similarity NPD7145 Approved
0.6588 Remote Similarity NPD7322 Clinical (unspecified phase)
0.6579 Remote Similarity NPD368 Approved
0.6556 Remote Similarity NPD5279 Phase 3
0.6556 Remote Similarity NPD3574 Clinical (unspecified phase)
0.6543 Remote Similarity NPD4787 Phase 1
0.6531 Remote Similarity NPD5223 Approved
0.6522 Remote Similarity NPD4753 Phase 2
0.6517 Remote Similarity NPD7338 Clinical (unspecified phase)
0.6512 Remote Similarity NPD6683 Phase 2
0.6477 Remote Similarity NPD4223 Phase 3
0.6477 Remote Similarity NPD4221 Approved
0.6465 Remote Similarity NPD4633 Approved
0.6465 Remote Similarity NPD5225 Approved
0.6465 Remote Similarity NPD5224 Approved
0.6465 Remote Similarity NPD5226 Approved
0.6465 Remote Similarity NPD5211 Phase 2
0.6463 Remote Similarity NPD4808 Clinical (unspecified phase)
0.6463 Remote Similarity NPD4809 Clinical (unspecified phase)
0.6444 Remote Similarity NPD5329 Approved
0.6444 Remote Similarity NPD6893 Approved
0.6438 Remote Similarity NPD342 Phase 1
0.6437 Remote Similarity NPD7514 Phase 3
0.6437 Remote Similarity NPD4695 Discontinued
0.6437 Remote Similarity NPD7332 Phase 2
0.6436 Remote Similarity NPD6402 Approved
0.6436 Remote Similarity NPD5739 Approved
0.6436 Remote Similarity NPD7128 Approved
0.6436 Remote Similarity NPD6675 Approved
0.642 Remote Similarity NPD3700 Clinical (unspecified phase)
0.642 Remote Similarity NPD3699 Clinical (unspecified phase)
0.6404 Remote Similarity NPD4788 Approved
0.64 Remote Similarity NPD5174 Approved
0.64 Remote Similarity NPD4754 Approved
0.64 Remote Similarity NPD5175 Approved
0.6395 Remote Similarity NPD3617 Approved
0.6374 Remote Similarity NPD7146 Approved
0.6374 Remote Similarity NPD6409 Approved
0.6374 Remote Similarity NPD5330 Approved
0.6374 Remote Similarity NPD7521 Approved
0.6374 Remote Similarity NPD6684 Approved
0.6374 Remote Similarity NPD7334 Approved
0.6364 Remote Similarity NPD6902 Approved
0.6364 Remote Similarity NPD6898 Phase 1
0.6353 Remote Similarity NPD6117 Approved
0.6337 Remote Similarity NPD5141 Approved
0.6333 Remote Similarity NPD4197 Approved
0.6311 Remote Similarity NPD6881 Approved
0.6311 Remote Similarity NPD6899 Approved
0.6311 Remote Similarity NPD7320 Approved
0.631 Remote Similarity NPD6113 Clinical (unspecified phase)
0.6304 Remote Similarity NPD3573 Approved
0.6304 Remote Similarity NPD7524 Approved
0.6304 Remote Similarity NPD7750 Discontinued
0.63 Remote Similarity NPD7632 Discontinued
0.6289 Remote Similarity NPD7614 Phase 1
0.6279 Remote Similarity NPD6116 Phase 1
0.6275 Remote Similarity NPD4767 Approved
0.6275 Remote Similarity NPD4768 Approved
0.625 Remote Similarity NPD8132 Clinical (unspecified phase)
0.625 Remote Similarity NPD6373 Approved
0.625 Remote Similarity NPD6372 Approved
0.6237 Remote Similarity NPD6903 Approved
0.6235 Remote Similarity NPD3703 Phase 2
0.6232 Remote Similarity NPD384 Approved
0.6232 Remote Similarity NPD385 Approved
0.6224 Remote Similarity NPD6083 Phase 2
0.6224 Remote Similarity NPD6084 Phase 2
0.6214 Remote Similarity NPD5701 Approved
0.6214 Remote Similarity NPD5697 Approved
0.6211 Remote Similarity NPD6411 Approved
0.6207 Remote Similarity NPD6118 Approved
0.6207 Remote Similarity NPD6114 Approved
0.6207 Remote Similarity NPD6115 Approved
0.6207 Remote Similarity NPD6697 Approved
0.62 Remote Similarity NPD4159 Approved
0.6196 Remote Similarity NPD4623 Approved
0.6196 Remote Similarity NPD4690 Approved
0.6196 Remote Similarity NPD4689 Approved
0.6196 Remote Similarity NPD5205 Approved
0.6196 Remote Similarity NPD4138 Approved
0.6196 Remote Similarity NPD4688 Approved
0.6196 Remote Similarity NPD4519 Discontinued
0.6196 Remote Similarity NPD4693 Phase 3
0.619 Remote Similarity NPD6883 Approved
0.619 Remote Similarity NPD7290 Approved
0.619 Remote Similarity NPD7102 Approved
0.6186 Remote Similarity NPD4629 Approved
0.6186 Remote Similarity NPD5210 Approved
0.617 Remote Similarity NPD6051 Approved
0.6162 Remote Similarity NPD4225 Approved
0.6154 Remote Similarity NPD4729 Approved
0.6154 Remote Similarity NPD5168 Approved
0.6154 Remote Similarity NPD4730 Approved
0.6154 Remote Similarity NPD5128 Approved
0.6154 Remote Similarity NPD6011 Approved
0.6147 Remote Similarity NPD8295 Clinical (unspecified phase)
0.6145 Remote Similarity NPD4245 Approved
0.6145 Remote Similarity NPD4244 Approved
0.6132 Remote Similarity NPD6650 Approved
0.6132 Remote Similarity NPD6869 Approved
0.6132 Remote Similarity NPD6617 Approved
0.6132 Remote Similarity NPD6401 Clinical (unspecified phase)
0.6132 Remote Similarity NPD6847 Approved
0.6132 Remote Similarity NPD8130 Phase 1
0.6132 Remote Similarity NPD6649 Approved
0.6106 Remote Similarity NPD8328 Phase 3
0.6095 Remote Similarity NPD6012 Approved
0.6095 Remote Similarity NPD6013 Approved
0.6095 Remote Similarity NPD6014 Approved
0.6075 Remote Similarity NPD6882 Approved
0.6075 Remote Similarity NPD8297 Approved
0.6067 Remote Similarity NPD6928 Phase 2
0.6067 Remote Similarity NPD8259 Clinical (unspecified phase)
0.6064 Remote Similarity NPD6672 Approved
0.6064 Remote Similarity NPD4722 Approved
0.6064 Remote Similarity NPD4723 Approved
0.6064 Remote Similarity NPD5737 Approved
0.6058 Remote Similarity NPD6412 Phase 2
0.6042 Remote Similarity NPD7087 Discontinued
0.6038 Remote Similarity NPD5135 Approved
0.6038 Remote Similarity NPD5247 Approved
0.6038 Remote Similarity NPD5169 Approved
0.6038 Remote Similarity NPD5251 Approved
0.6038 Remote Similarity NPD5134 Clinical (unspecified phase)
0.6038 Remote Similarity NPD4634 Approved
0.6038 Remote Similarity NPD5248 Approved
0.6038 Remote Similarity NPD5250 Approved
0.6038 Remote Similarity NPD5249 Phase 3
0.6024 Remote Similarity NPD3698 Phase 2
0.6022 Remote Similarity NPD4694 Approved
0.6022 Remote Similarity NPD5690 Phase 2

  Bioactivity similarity: Similar Natural Products in NPASS

Bioactivity similarity was calculated based on bioactivity descriptors of compounds. The bioactivity descriptors were calculated by a recently developed AI algorithm Chemical Checker (CC) [Nature Biotechnology, 38:1087–1096, 2020; Nature Communications, 12:3932, 2021], which evaluated bioactivity similarities at five levels:
A: chemistry similarity;
B: biological targets similarity;
C: networks similarity;
D: cell-based bioactivity similarity;
E: similarity based on clinical data.

Those 5 categories of CC bioactivity descriptors were calculated and then subjected to manifold projection using UMAP algorithm, to project all NPs on a 2-Dimensional space. The current NP was highlighted with a small circle in the 2-D map. Below figures: left-to-right, A-to-E.

A: chemistry similarity
B: biological targets similarity
C: networks similarity
D: cell-based bioactivity similarity
E: similarity based on clinical data