Structure

Physi-Chem Properties

Molecular Weight:  311.15
Volume:  324.503
LogP:  1.794
LogD:  1.52
LogS:  -1.887
# Rotatable Bonds:  2
TPSA:  38.77
# H-Bond Aceptor:  4
# H-Bond Donor:  0
# Rings:  4
# Heavy Atoms:  4

MedChem Properties

QED Drug-Likeness Score:  0.841
Synthetic Accessibility Score:  4.004
Fsp3:  0.421
Lipinski Rule-of-5:  Accepted
Pfizer Rule:  Accepted
GSK Rule:  Accepted
BMS Rule:  0
Golden Triangle Rule:  Accepted
Chelating Alert:  0
PAINS Alert:  0

ADMET Properties (ADMETlab2.0)

ADMET: Absorption

Caco-2 Permeability:  -4.661
MDCK Permeability:  2.4909453713917173e-05
Pgp-inhibitor:  0.03
Pgp-substrate:  0.02
Human Intestinal Absorption (HIA):  0.006
20% Bioavailability (F20%):  0.012
30% Bioavailability (F30%):  0.01

ADMET: Distribution

Blood-Brain-Barrier Penetration (BBB):  0.984
Plasma Protein Binding (PPB):  83.23107147216797%
Volume Distribution (VD):  1.293
Pgp-substrate:  5.9606757164001465%

ADMET: Metabolism

CYP1A2-inhibitor:  0.119
CYP1A2-substrate:  0.656
CYP2C19-inhibitor:  0.254
CYP2C19-substrate:  0.902
CYP2C9-inhibitor:  0.045
CYP2C9-substrate:  0.634
CYP2D6-inhibitor:  0.48
CYP2D6-substrate:  0.763
CYP3A4-inhibitor:  0.034
CYP3A4-substrate:  0.91

ADMET: Excretion

Clearance (CL):  5.104
Half-life (T1/2):  0.857

ADMET: Toxicity

hERG Blockers:  0.705
Human Hepatotoxicity (H-HT):  0.383
Drug-inuced Liver Injury (DILI):  0.026
AMES Toxicity:  0.02
Rat Oral Acute Toxicity:  0.672
Maximum Recommended Daily Dose:  0.951
Skin Sensitization:  0.739
Carcinogencity:  0.908
Eye Corrosion:  0.003
Eye Irritation:  0.011
Respiratory Toxicity:  0.972

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Similar NPs/Drugs  

  Natural Product: NPC118804

Natural Product ID:  NPC118804
Common Name*:   Pronuciferine
IUPAC Name:   n.a.
Synonyms:   Pronuciferine
Standard InCHIKey:  WUYQEGNOQLRQAQ-CQSZACIVSA-N
Standard InCHI:  InChI=1S/C19H21NO3/c1-20-9-6-12-10-15(22-2)18(23-3)17-16(12)14(20)11-19(17)7-4-13(21)5-8-19/h4-5,7-8,10,14H,6,9,11H2,1-3H3/t14-/m1/s1
SMILES:  CN1CCc2cc(c(c3c2[C@H]1CC13C=CC(=O)C=C1)OC)OC
Synthetic Gene Cluster:   n.a.
ChEMBL Identifier:   CHEMBL237766
PubChem CID:   200480
Chemical Classification**:  
  • CHEMONTID:0000000 [Organic compounds]
    • [CHEMONTID:0000279] Alkaloids and derivatives
      • [CHEMONTID:0002660] Proaporphines

*Note: the InCHIKey will be temporarily assigned as the "Common Name" if no IUPAC name or alternative short name is available.
**Note: the Chemical Classification was calculated by NPClassifier Version 1.5. Reference: PMID:34662515.

  Species Source

Organism ID Organism Name Taxonomy Level Family SuperKingdom Isolation Part Collection Location Collection Time Reference
NPO29471 Achyrocline satureioides Species Asteraceae Eukaryota n.a. n.a. n.a. PMID[11858757]
NPO20751 Hypserpa nitida Species Menispermaceae Eukaryota n.a. n.a. n.a. PMID[17723297]
NPO3478 Nelumbo nucifera Species Nelumbonaceae Eukaryota n.a. n.a. n.a. PMID[19919095]
NPO3478 Nelumbo nucifera Species Nelumbonaceae Eukaryota flower buds and leaves Khon Kaen province, Thailand 2010 PMID[23270663]
NPO3478 Nelumbo nucifera Species Nelumbonaceae Eukaryota Leaves n.a. n.a. PMID[23642481]
NPO22181 Leibnitzia anandria Species Asteraceae Eukaryota n.a. n.a. n.a. PMID[24699147]
NPO29471 Achyrocline satureioides Species Asteraceae Eukaryota aerial parts Alpa Corral, Cordoba, Argentina 2008-Aug PMID[25517209]
NPO21410 Populus balsamifera Species Salicaceae Eukaryota Buds n.a. n.a. PMID[25927817]
NPO3478 Nelumbo nucifera Species Nelumbonaceae Eukaryota Flowers n.a. n.a. PMID[26462418]
NPO3478 Nelumbo nucifera Species Nelumbonaceae Eukaryota Fruit n.a. n.a. Database[FooDB]
NPO3478 Nelumbo nucifera Species Nelumbonaceae Eukaryota Rhizome n.a. n.a. Database[FooDB]
NPO3478 Nelumbo nucifera Species Nelumbonaceae Eukaryota Seed n.a. n.a. Database[FooDB]
NPO3478 Nelumbo nucifera Species Nelumbonaceae Eukaryota n.a. n.a. Database[FooDB]
NPO3478 Nelumbo nucifera Species Nelumbonaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO24050 Stephania glabra Species Menispermaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO7002 Ardisia hortorum Species Primulaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO21410 Populus balsamifera Species Salicaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO22181 Leibnitzia anandria Species Asteraceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO24050 Stephania glabra Species Menispermaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO21410 Populus balsamifera Species Salicaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO3478 Nelumbo nucifera Species Nelumbonaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO7002 Ardisia hortorum Species Primulaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO628 Schisandra nigra Species Schisandraceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO3478 Nelumbo nucifera Species Nelumbonaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO21410 Populus balsamifera Species Salicaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO24050 Stephania glabra Species Menispermaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO3478 Nelumbo nucifera Species Nelumbonaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO1327 Heliothis maritima Species 0ctuidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO20755 Ballota hirsuta Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO22436 Lora quadra n.a. n.a. n.a. n.a. n.a. n.a. Database[UNPD]
NPO3183 Phalaenopsis equestris Species Orchidaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO3478 Nelumbo nucifera Species Nelumbonaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO23461 Medicago hispida Species Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO22942 Moesziomyces antarcticus Species Ustilaginaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO23414 Karwinskia subcordata Species Rhamnaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO24365 Hymenoxys ivesiana Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO2256 Pseudaxinyssa cantharella n.a. n.a. n.a. n.a. n.a. n.a. Database[UNPD]
NPO2058 Sideritis discolor Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO20325 Dictyodendrilla cavernosa Species Dictyodendrillidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO22629 Spongia vaginalis Species Spongiidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO628 Schisandra nigra Species Schisandraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO24183 Brickellia dentata Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO8841 Shorea leprosula Species Dipterocarpaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO22498 Lithocarpus haipinii Species Fagaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO24050 Stephania glabra Species Menispermaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO19027 Passiflora coccinea Species Passifloraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO19668.1 Euphorbia characias subsp. wulfenii Subspecies Euphorbiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO4921 Brickellia diffusa Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO13528 Funneliformis mosseae Species Glomeraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO20704 Conus gladiator Species Conidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO22738 Horsfieldia iryaghedhi Species Myristicaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO29471 Achyrocline satureioides Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO413 Astragalus prusianus Species Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO23324 Porphyridium purpureum Species Porphyridiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO22181 Leibnitzia anandria Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO21468 Dilophus guineensis Species Dictyotaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO23550 Maytenus octogona Species Celastraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO7002 Ardisia hortorum Species Primulaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO20581 Sargassum fulvellum Species Sargassaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO18333 Sphaerophysa salsula Species Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO21410 Populus balsamifera Species Salicaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO23282 Russula paludosa Species Russulaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO21780 Strychnos gossweileri Species Loganiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO20965 Oxytropis lanata Species Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO19888 Doronicum grandiflorum Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO189 Pachypodium lealii Species Apocynaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO20751 Hypserpa nitida Species Menispermaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO23885 Agathosma bisulca Species Rutaceae Eukaryota n.a. n.a. n.a. Database[UNPD]

☑ Note for Reference:
In addition to directly collecting NP source organism data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated them from below databases:
UNPD: Universal Natural Products Database [PMID: 23638153].
StreptomeDB: a database of streptomycetes natural products [PMID: 33051671].
TM-MC: a database of medicinal materials and chemical compounds in Northeast Asian traditional medicine [PMID: 26156871].
TCM@Taiwan: a Traditional Chinese Medicine database [PMID: 21253603].
TCMID: a Traditional Chinese Medicine database [PMID: 29106634].
TCMSP: The traditional Chinese medicine systems pharmacology database and analysis platform [PMID: 24735618].
HerDing: a herb recommendation system to treat diseases using genes and chemicals [PMID: 26980517].
MetaboLights: a metabolomics database [PMID: 27010336].
FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].

  NP Quantity Composition/Concentration

Organism ID NP ID Organism Material Preparation Organism Part NP Quantity (Standard) NP Quantity (Minimum) NP Quantity (Maximum) Quantity Unit Reference

☑ Note for Reference:
In addition to directly collecting NP quantitative data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated NP quantitative records for specific NP domains (e.g., NPS from foods or herbs) from domain-specific databases. These databases include:
DUKE: Dr. Duke's Phytochemical and Ethnobotanical Databases.
PHENOL EXPLORER: is the first comprehensive database on polyphenol content in foods [PMID: 24103452], its homepage can be accessed at here.
FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].

  Biological Activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference
NPT368 Cell Line SN12C Homo sapiens GI50 n.a. 100000.0 nM PMID[502440]
NPT369 Cell Line ACHN Homo sapiens GI50 n.a. 100000.0 nM PMID[502440]
NPT370 Cell Line NCI-H23 Homo sapiens GI50 n.a. 100000.0 nM PMID[502440]
NPT371 Cell Line UO-31 Homo sapiens GI50 n.a. 100000.0 nM PMID[502440]
NPT372 Cell Line HOP-92 Homo sapiens GI50 n.a. 100000.0 nM PMID[502440]
NPT374 Cell Line SF-539 Homo sapiens GI50 n.a. 100000.0 nM PMID[502440]
NPT373 Cell Line SK-MEL-5 Homo sapiens GI50 n.a. 100000.0 nM PMID[502440]
NPT375 Cell Line Malme-3M Homo sapiens GI50 n.a. 100000.0 nM PMID[502440]
NPT377 Cell Line OVCAR-3 Homo sapiens GI50 n.a. 100000.0 nM PMID[502440]
NPT112 Cell Line MOLT-4 Homo sapiens GI50 n.a. 100000.0 nM PMID[502440]
NPT380 Cell Line U-251 Homo sapiens GI50 n.a. 100000.0 nM PMID[502440]
NPT381 Cell Line OVCAR-8 Homo sapiens GI50 n.a. 100000.0 nM PMID[502440]
NPT382 Cell Line OVCAR-5 Homo sapiens GI50 n.a. 100000.0 nM PMID[502440]
NPT572 Cell Line DMS-273 Homo sapiens GI50 n.a. 100000.0 nM PMID[502440]
NPT383 Cell Line SNB-19 Homo sapiens GI50 n.a. 100000.0 nM PMID[502440]
NPT385 Cell Line SR Homo sapiens GI50 n.a. 100000.0 nM PMID[502440]
NPT384 Cell Line TK-10 Homo sapiens GI50 n.a. 100000.0 nM PMID[502440]
NPT323 Cell Line SW-620 Homo sapiens GI50 n.a. 100000.0 nM PMID[502440]
NPT573 Cell Line M19-MEL Homo sapiens GI50 n.a. 100000.0 nM PMID[502440]
NPT455 Cell Line NCI-H522 Homo sapiens GI50 n.a. 74301.91 nM PMID[502440]
NPT386 Cell Line KM12 Homo sapiens GI50 n.a. 100000.0 nM PMID[502440]
NPT574 Cell Line XF498 Homo sapiens GI50 n.a. 100000.0 nM PMID[502440]
NPT387 Cell Line M14 Homo sapiens GI50 n.a. 100000.0 nM PMID[502440]
NPT388 Cell Line NCI-H322M Homo sapiens GI50 n.a. 100000.0 nM PMID[502440]
NPT389 Cell Line RPMI-8226 Homo sapiens GI50 n.a. 100000.0 nM PMID[502440]
NPT390 Cell Line LOX IMVI Homo sapiens GI50 n.a. 100000.0 nM PMID[502440]
NPT147 Cell Line SK-MEL-2 Homo sapiens GI50 n.a. 100000.0 nM PMID[502440]
NPT575 Cell Line KM-20L2 Homo sapiens GI50 n.a. 100000.0 nM PMID[502440]
NPT391 Cell Line HCC 2998 Homo sapiens GI50 n.a. 100000.0 nM PMID[502440]
NPT81 Cell Line A549 Homo sapiens GI50 n.a. 100000.0 nM PMID[502440]
NPT392 Cell Line SNB-75 Homo sapiens GI50 n.a. 100000.0 nM PMID[502440]
NPT393 Cell Line HCT-116 Homo sapiens GI50 n.a. 100000.0 nM PMID[502440]
NPT148 Cell Line HCT-15 Homo sapiens GI50 n.a. 100000.0 nM PMID[502440]
NPT394 Cell Line EKVX Homo sapiens GI50 n.a. 100000.0 nM PMID[502440]
NPT395 Cell Line SF-268 Homo sapiens GI50 n.a. 100000.0 nM PMID[502440]
NPT146 Cell Line SK-OV-3 Homo sapiens GI50 n.a. 100000.0 nM PMID[502440]
NPT731 Cell Line LXFL 529 Homo sapiens GI50 n.a. 100000.0 nM PMID[502440]
NPT576 Cell Line DMS-114 Homo sapiens GI50 n.a. 100000.0 nM PMID[502440]
NPT397 Cell Line NCI-H460 Homo sapiens GI50 n.a. 100000.0 nM PMID[502440]
NPT398 Cell Line UACC-62 Homo sapiens GI50 n.a. 100000.0 nM PMID[502440]
NPT458 Cell Line IGROV-1 Homo sapiens GI50 n.a. 100000.0 nM PMID[502440]
NPT399 Cell Line SF-295 Homo sapiens GI50 n.a. 100000.0 nM PMID[502440]
NPT401 Cell Line 786-0 Homo sapiens GI50 n.a. 100000.0 nM PMID[502440]
NPT577 Cell Line RXF 631 Homo sapiens GI50 n.a. 100000.0 nM PMID[502440]
NPT403 Cell Line UACC-257 Homo sapiens GI50 n.a. 100000.0 nM PMID[502440]
NPT578 Cell Line SNB-78 Homo sapiens GI50 n.a. 100000.0 nM PMID[502440]
NPT579 Cell Line DLD-1 Homo sapiens GI50 n.a. 100000.0 nM PMID[502440]
NPT139 Cell Line HT-29 Homo sapiens GI50 n.a. 100000.0 nM PMID[502440]
NPT405 Cell Line NCI-H226 Homo sapiens GI50 n.a. 100000.0 nM PMID[502440]
NPT170 Cell Line SK-MEL-28 Homo sapiens GI50 n.a. 100000.0 nM PMID[502440]
NPT406 Cell Line RXF 393 Homo sapiens GI50 n.a. 26001.6 nM PMID[502440]
NPT407 Cell Line COLO 205 Homo sapiens GI50 n.a. 100000.0 nM PMID[502440]
NPT732 Cell Line HOP-18 Homo sapiens GI50 n.a. 100000.0 nM PMID[502440]
NPT20529 NON-MOLECULAR NON-PROTEIN TARGET n.a. CC50 = 50000.0 nM PMID[502439]
NPT963 Organism Hepatitis B virus Hepatitis B virus IC50 = 42000.0 nM PMID[502439]
NPT963 Organism Hepatitis B virus Hepatitis B virus IC50 > 4180000.0 nM PMID[502439]
NPT2 Others Unspecified Ratio CC50/IC50 = 1.19 n.a. PMID[502439]
NPT2 Others Unspecified Ratio CC50/IC50 < 1.0 n.a. PMID[502439]
NPT2 Others Unspecified Inhibition = 16.8 % PMID[502441]
NPT2 Others Unspecified Inhibition = 4.0 % PMID[502441]
NPT27 Others Unspecified Inhibition = 82.0 % PMID[502441]
NPT27 Others Unspecified Inhibition = 86.0 % PMID[502441]
NPT2 Others Unspecified IC50 = 47900.0 nM PMID[502441]
NPT2 Others Unspecified Inhibition = 66.4 % PMID[502441]
NPT2 Others Unspecified Inhibition = 40.3 % PMID[502441]
NPT2 Others Unspecified Inhibition = 18.3 % PMID[502441]

☑ Note for Activity Records:
☉ The quantitative biological activities were primarily integrated from ChEMBL (Version-30) database and were also directly collected from PubMed literature. PubMed PMID was provided as the reference link for each activity record.

  Chemically structural similarity: I. Similar Active Natural Products in NPASS

Top-200 similar NPs were calculated against the active-NP-set (includes 4,3285 NPs with experimentally-derived bioactivity available in NPASS)

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules. Tc lies between [0, 1] where '1' indicates the highest similarity. What is Tanimoto coefficient

●  The left chart: Distribution of similarity level between NPC118804 and all remaining natural products in the NPASS database.
●  The right table: Most similar natural products (Tc>=0.56 or Top200).

Similarity Score Similarity Level Natural Product ID
0.9608 High Similarity NPC2770
0.9608 High Similarity NPC39103
0.9548 High Similarity NPC470324
0.9074 High Similarity NPC21885
0.871 High Similarity NPC476579
0.86 High Similarity NPC314682
0.8598 High Similarity NPC476331
0.859 High Similarity NPC85747
0.859 High Similarity NPC8337
0.8543 High Similarity NPC188163
0.8543 High Similarity NPC328750
0.8543 High Similarity NPC474915
0.8543 High Similarity NPC213206
0.8471 Intermediate Similarity NPC81733
0.8471 Intermediate Similarity NPC326316
0.8452 Intermediate Similarity NPC210437
0.8452 Intermediate Similarity NPC51957
0.8452 Intermediate Similarity NPC16107
0.8452 Intermediate Similarity NPC476144
0.8452 Intermediate Similarity NPC106295
0.8442 Intermediate Similarity NPC130926
0.8408 Intermediate Similarity NPC223125
0.8405 Intermediate Similarity NPC255607
0.8405 Intermediate Similarity NPC3375
0.8397 Intermediate Similarity NPC7467
0.8385 Intermediate Similarity NPC106786
0.8344 Intermediate Similarity NPC59567
0.8333 Intermediate Similarity NPC476151
0.8323 Intermediate Similarity NPC185838
0.8313 Intermediate Similarity NPC78733
0.8312 Intermediate Similarity NPC476567
0.8312 Intermediate Similarity NPC136860
0.8312 Intermediate Similarity NPC128019
0.8302 Intermediate Similarity NPC476580
0.8302 Intermediate Similarity NPC470924
0.8302 Intermediate Similarity NPC223124
0.828 Intermediate Similarity NPC475959
0.8261 Intermediate Similarity NPC147091
0.8261 Intermediate Similarity NPC323443
0.8261 Intermediate Similarity NPC180756
0.8243 Intermediate Similarity NPC160193
0.8232 Intermediate Similarity NPC476569
0.8228 Intermediate Similarity NPC103379
0.8228 Intermediate Similarity NPC219162
0.8228 Intermediate Similarity NPC477565
0.8221 Intermediate Similarity NPC477559
0.8221 Intermediate Similarity NPC160298
0.8221 Intermediate Similarity NPC306902
0.8221 Intermediate Similarity NPC232924
0.8221 Intermediate Similarity NPC226428
0.8221 Intermediate Similarity NPC266753
0.8217 Intermediate Similarity NPC191376
0.8217 Intermediate Similarity NPC321505
0.8217 Intermediate Similarity NPC179825
0.821 Intermediate Similarity NPC476572
0.8199 Intermediate Similarity NPC325871
0.8199 Intermediate Similarity NPC99659
0.8199 Intermediate Similarity NPC41178
0.8199 Intermediate Similarity NPC138487
0.8199 Intermediate Similarity NPC216459
0.8176 Intermediate Similarity NPC274026
0.8165 Intermediate Similarity NPC24233
0.8165 Intermediate Similarity NPC428
0.8165 Intermediate Similarity NPC135538
0.8165 Intermediate Similarity NPC476571
0.8165 Intermediate Similarity NPC246587
0.8165 Intermediate Similarity NPC147390
0.8148 Intermediate Similarity NPC146288
0.8148 Intermediate Similarity NPC126519
0.8148 Intermediate Similarity NPC57512
0.8148 Intermediate Similarity NPC203784
0.8148 Intermediate Similarity NPC170503
0.8144 Intermediate Similarity NPC241055
0.8118 Intermediate Similarity NPC241704
0.8113 Intermediate Similarity NPC92541
0.811 Intermediate Similarity NPC166014
0.811 Intermediate Similarity NPC27410
0.8105 Intermediate Similarity NPC253429
0.8101 Intermediate Similarity NPC95075
0.8101 Intermediate Similarity NPC253883
0.8101 Intermediate Similarity NPC90844
0.8086 Intermediate Similarity NPC2413
0.8086 Intermediate Similarity NPC278799
0.8086 Intermediate Similarity NPC276588
0.8086 Intermediate Similarity NPC127674
0.8086 Intermediate Similarity NPC249797
0.8086 Intermediate Similarity NPC110416
0.8086 Intermediate Similarity NPC469817
0.8086 Intermediate Similarity NPC5238
0.8086 Intermediate Similarity NPC184026
0.8086 Intermediate Similarity NPC193949
0.8086 Intermediate Similarity NPC204828
0.8086 Intermediate Similarity NPC172765
0.8086 Intermediate Similarity NPC244112
0.8086 Intermediate Similarity NPC207757
0.8086 Intermediate Similarity NPC295691
0.8086 Intermediate Similarity NPC39701
0.8086 Intermediate Similarity NPC189266
0.8086 Intermediate Similarity NPC54379
0.8084 Intermediate Similarity NPC284842
0.8075 Intermediate Similarity NPC148898
0.8075 Intermediate Similarity NPC133011
0.8075 Intermediate Similarity NPC82285
0.8072 Intermediate Similarity NPC225774
0.8072 Intermediate Similarity NPC231198
0.805 Intermediate Similarity NPC130941
0.8037 Intermediate Similarity NPC234392
0.8037 Intermediate Similarity NPC31311
0.8024 Intermediate Similarity NPC219341
0.8024 Intermediate Similarity NPC476432
0.8024 Intermediate Similarity NPC24264
0.8023 Intermediate Similarity NPC32154
0.8 Intermediate Similarity NPC97072
0.8 Intermediate Similarity NPC215829
0.8 Intermediate Similarity NPC207824
0.8 Intermediate Similarity NPC60538
0.7988 Intermediate Similarity NPC75958
0.7987 Intermediate Similarity NPC144863
0.7976 Intermediate Similarity NPC298979
0.7976 Intermediate Similarity NPC247389
0.7964 Intermediate Similarity NPC302527
0.7964 Intermediate Similarity NPC16805
0.7964 Intermediate Similarity NPC168409
0.7964 Intermediate Similarity NPC167546
0.7963 Intermediate Similarity NPC233029
0.7963 Intermediate Similarity NPC210148
0.795 Intermediate Similarity NPC220858
0.795 Intermediate Similarity NPC88249
0.795 Intermediate Similarity NPC192768
0.795 Intermediate Similarity NPC151895
0.795 Intermediate Similarity NPC97221
0.7939 Intermediate Similarity NPC477080
0.7922 Intermediate Similarity NPC7018
0.7917 Intermediate Similarity NPC124657
0.7917 Intermediate Similarity NPC304659
0.7917 Intermediate Similarity NPC86144
0.7914 Intermediate Similarity NPC2295
0.7914 Intermediate Similarity NPC477564
0.7904 Intermediate Similarity NPC324144
0.7901 Intermediate Similarity NPC277669
0.7901 Intermediate Similarity NPC476568
0.7901 Intermediate Similarity NPC76213
0.7892 Intermediate Similarity NPC205167
0.7892 Intermediate Similarity NPC249274
0.787 Intermediate Similarity NPC81218
0.787 Intermediate Similarity NPC474931
0.787 Intermediate Similarity NPC145832
0.787 Intermediate Similarity NPC158376
0.787 Intermediate Similarity NPC117188
0.787 Intermediate Similarity NPC306555
0.787 Intermediate Similarity NPC474324
0.787 Intermediate Similarity NPC210918
0.787 Intermediate Similarity NPC57812
0.787 Intermediate Similarity NPC12053
0.787 Intermediate Similarity NPC205421
0.7867 Intermediate Similarity NPC172403
0.7866 Intermediate Similarity NPC93593
0.7857 Intermediate Similarity NPC136508
0.7857 Intermediate Similarity NPC306669
0.7857 Intermediate Similarity NPC96603
0.7857 Intermediate Similarity NPC232514
0.7857 Intermediate Similarity NPC212794
0.7857 Intermediate Similarity NPC238530
0.7857 Intermediate Similarity NPC13504
0.7857 Intermediate Similarity NPC276944
0.7857 Intermediate Similarity NPC78222
0.7857 Intermediate Similarity NPC477563
0.7857 Intermediate Similarity NPC196447
0.7857 Intermediate Similarity NPC306843
0.7857 Intermediate Similarity NPC253043
0.7853 Intermediate Similarity NPC26601
0.7844 Intermediate Similarity NPC153631
0.7843 Intermediate Similarity NPC160692
0.7841 Intermediate Similarity NPC214629
0.7834 Intermediate Similarity NPC470925
0.7831 Intermediate Similarity NPC59028
0.7831 Intermediate Similarity NPC92191
0.7824 Intermediate Similarity NPC82533
0.7824 Intermediate Similarity NPC266176
0.7824 Intermediate Similarity NPC158148
0.7824 Intermediate Similarity NPC290759
0.7824 Intermediate Similarity NPC475845
0.7818 Intermediate Similarity NPC247639
0.7818 Intermediate Similarity NPC25084
0.7816 Intermediate Similarity NPC27887
0.7811 Intermediate Similarity NPC81247
0.7811 Intermediate Similarity NPC35627
0.7811 Intermediate Similarity NPC476573
0.7806 Intermediate Similarity NPC131204
0.7806 Intermediate Similarity NPC301050
0.7803 Intermediate Similarity NPC474470
0.7803 Intermediate Similarity NPC222524
0.7798 Intermediate Similarity NPC233650
0.7798 Intermediate Similarity NPC189470
0.7798 Intermediate Similarity NPC1229
0.7778 Intermediate Similarity NPC474708
0.7771 Intermediate Similarity NPC298339
0.7771 Intermediate Similarity NPC40389
0.7771 Intermediate Similarity NPC315707
0.7771 Intermediate Similarity NPC148014

  Chemically structural similarity: II. Similar Clinical/Approved Drugs

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules.

●  The left chart: Distribution of similarity level between NPC118804 and all drugs/candidates.
●  The right table: Most similar clinical/approved drugs (Tc>=0.56 or Top200).

Similarity Score Similarity Level Drug ID Developmental Stage
0.9548 High Similarity NPD2898 Approved
0.8543 High Similarity NPD4664 Clinical (unspecified phase)
0.8452 Intermediate Similarity NPD4584 Approved
0.8344 Intermediate Similarity NPD3641 Approved
0.8344 Intermediate Similarity NPD3640 Phase 3
0.8344 Intermediate Similarity NPD3639 Approved
0.8243 Intermediate Similarity NPD2669 Clinical (unspecified phase)
0.821 Intermediate Similarity NPD5978 Approved
0.821 Intermediate Similarity NPD5977 Approved
0.8012 Intermediate Similarity NPD4017 Approved
0.7929 Intermediate Similarity NPD4481 Phase 3
0.7892 Intermediate Similarity NPD7833 Phase 2
0.7892 Intermediate Similarity NPD7832 Clinical (unspecified phase)
0.7892 Intermediate Similarity NPD7831 Phase 2
0.7811 Intermediate Similarity NPD6071 Discontinued
0.7805 Intermediate Similarity NPD4773 Phase 2
0.7805 Intermediate Similarity NPD4772 Phase 2
0.7771 Intermediate Similarity NPD2560 Approved
0.7771 Intermediate Similarity NPD2563 Approved
0.7771 Intermediate Similarity NPD3534 Clinical (unspecified phase)
0.7765 Intermediate Similarity NPD2969 Approved
0.7765 Intermediate Similarity NPD2970 Approved
0.7758 Intermediate Similarity NPD7298 Approved
0.7719 Intermediate Similarity NPD2489 Approved
0.7719 Intermediate Similarity NPD27 Approved
0.7706 Intermediate Similarity NPD3051 Approved
0.7706 Intermediate Similarity NPD4166 Phase 2
0.7669 Intermediate Similarity NPD6031 Approved
0.7669 Intermediate Similarity NPD6030 Approved
0.7647 Intermediate Similarity NPD6107 Approved
0.7643 Intermediate Similarity NPD6029 Clinical (unspecified phase)
0.7643 Intermediate Similarity NPD6028 Clinical (unspecified phase)
0.7597 Intermediate Similarity NPD5718 Phase 2
0.7588 Intermediate Similarity NPD7201 Clinical (unspecified phase)
0.7578 Intermediate Similarity NPD5084 Clinical (unspecified phase)
0.7571 Intermediate Similarity NPD2968 Approved
0.7571 Intermediate Similarity NPD2971 Approved
0.7529 Intermediate Similarity NPD8252 Approved
0.7529 Intermediate Similarity NPD8251 Approved
0.7529 Intermediate Similarity NPD8099 Discontinued
0.7515 Intermediate Similarity NPD6788 Approved
0.75 Intermediate Similarity NPD3110 Approved
0.75 Intermediate Similarity NPD3109 Approved
0.7486 Intermediate Similarity NPD8156 Discontinued
0.7485 Intermediate Similarity NPD3124 Discontinued
0.7469 Intermediate Similarity NPD5241 Discontinued
0.7468 Intermediate Similarity NPD6896 Approved
0.7468 Intermediate Similarity NPD6895 Approved
0.7439 Intermediate Similarity NPD1754 Clinical (unspecified phase)
0.7405 Intermediate Similarity NPD2492 Phase 1
0.7399 Intermediate Similarity NPD4010 Discontinued
0.7396 Intermediate Similarity NPD4585 Approved
0.7386 Intermediate Similarity NPD5313 Approved
0.7386 Intermediate Similarity NPD5312 Approved
0.7378 Intermediate Similarity NPD2421 Approved
0.7378 Intermediate Similarity NPD2420 Approved
0.7355 Intermediate Similarity NPD5752 Clinical (unspecified phase)
0.7333 Intermediate Similarity NPD1424 Approved
0.7322 Intermediate Similarity NPD2488 Approved
0.7322 Intermediate Similarity NPD2490 Approved
0.7322 Intermediate Similarity NPD6656 Clinical (unspecified phase)
0.7321 Intermediate Similarity NPD1337 Clinical (unspecified phase)
0.7317 Intermediate Similarity NPD2120 Phase 2
0.7308 Intermediate Similarity NPD7291 Discontinued
0.7303 Intermediate Similarity NPD6297 Approved
0.7294 Intermediate Similarity NPD6818 Clinical (unspecified phase)
0.7289 Intermediate Similarity NPD3647 Clinical (unspecified phase)
0.7287 Intermediate Similarity NPD4107 Approved
0.7278 Intermediate Similarity NPD6873 Phase 2
0.7278 Intermediate Similarity NPD7313 Approved
0.7278 Intermediate Similarity NPD7310 Approved
0.7278 Intermediate Similarity NPD7312 Approved
0.7278 Intermediate Similarity NPD7311 Approved
0.7273 Intermediate Similarity NPD4420 Approved
0.7257 Intermediate Similarity NPD6688 Approved
0.7257 Intermediate Similarity NPD6687 Approved
0.7241 Intermediate Similarity NPD7802 Discontinued
0.7238 Intermediate Similarity NPD7309 Approved
0.7238 Intermediate Similarity NPD8053 Approved
0.7238 Intermediate Similarity NPD8054 Approved
0.7219 Intermediate Similarity NPD5564 Approved
0.7215 Intermediate Similarity NPD4474 Approved
0.7215 Intermediate Similarity NPD4475 Approved
0.7213 Intermediate Similarity NPD7906 Approved
0.7212 Intermediate Similarity NPD6783 Clinical (unspecified phase)
0.7211 Intermediate Similarity NPD3057 Approved
0.7195 Intermediate Similarity NPD5754 Discontinued
0.7191 Intermediate Similarity NPD3050 Clinical (unspecified phase)
0.7182 Intermediate Similarity NPD4578 Approved
0.7182 Intermediate Similarity NPD4577 Approved
0.7176 Intermediate Similarity NPD5090 Approved
0.7176 Intermediate Similarity NPD5089 Approved
0.7176 Intermediate Similarity NPD7109 Clinical (unspecified phase)
0.7176 Intermediate Similarity NPD7110 Phase 1
0.7175 Intermediate Similarity NPD5602 Clinical (unspecified phase)
0.716 Intermediate Similarity NPD7261 Clinical (unspecified phase)
0.7158 Intermediate Similarity NPD4482 Phase 3
0.7143 Intermediate Similarity NPD6618 Phase 2
0.7143 Intermediate Similarity NPD6851 Approved
0.7143 Intermediate Similarity NPD6853 Approved
0.7135 Intermediate Similarity NPD5525 Clinical (unspecified phase)
0.7134 Intermediate Similarity NPD5177 Phase 3
0.7128 Intermediate Similarity NPD2973 Approved
0.7128 Intermediate Similarity NPD2975 Approved
0.7128 Intermediate Similarity NPD2974 Approved
0.712 Intermediate Similarity NPD3448 Approved
0.712 Intermediate Similarity NPD5006 Approved
0.712 Intermediate Similarity NPD2491 Approved
0.712 Intermediate Similarity NPD3533 Approved
0.712 Intermediate Similarity NPD5005 Approved
0.712 Intermediate Similarity NPD2972 Approved
0.7108 Intermediate Similarity NPD3845 Phase 1
0.7108 Intermediate Similarity NPD7124 Phase 2
0.7107 Intermediate Similarity NPD554 Clinical (unspecified phase)
0.7088 Intermediate Similarity NPD5917 Clinical (unspecified phase)
0.7074 Intermediate Similarity NPD7667 Clinical (unspecified phase)
0.7066 Intermediate Similarity NPD7598 Phase 2
0.7065 Intermediate Similarity NPD4663 Approved
0.7059 Intermediate Similarity NPD824 Approved
0.7048 Intermediate Similarity NPD5307 Clinical (unspecified phase)
0.7041 Intermediate Similarity NPD5976 Discontinued
0.7041 Intermediate Similarity NPD6662 Clinical (unspecified phase)
0.7041 Intermediate Similarity NPD1914 Approved
0.7029 Intermediate Similarity NPD7400 Phase 3
0.7016 Intermediate Similarity NPD4580 Approved
0.7011 Intermediate Similarity NPD5087 Clinical (unspecified phase)
0.7011 Intermediate Similarity NPD4581 Clinical (unspecified phase)
0.7006 Intermediate Similarity NPD7905 Discontinued
0.7 Intermediate Similarity NPD2674 Phase 3
0.6988 Remote Similarity NPD6748 Discontinued
0.6988 Remote Similarity NPD6331 Phase 2
0.6988 Remote Similarity NPD3977 Clinical (unspecified phase)
0.6979 Remote Similarity NPD2494 Approved
0.6979 Remote Similarity NPD3452 Approved
0.6979 Remote Similarity NPD3450 Approved
0.6979 Remote Similarity NPD2493 Approved
0.6977 Remote Similarity NPD6385 Approved
0.6977 Remote Similarity NPD6386 Approved
0.6975 Remote Similarity NPD4579 Clinical (unspecified phase)
0.6971 Remote Similarity NPD4055 Discovery
0.697 Remote Similarity NPD1372 Clinical (unspecified phase)
0.6966 Remote Similarity NPD2388 Discontinued
0.6964 Remote Similarity NPD5297 Approved
0.6954 Remote Similarity NPD5616 Clinical (unspecified phase)
0.6946 Remote Similarity NPD3692 Discontinued
0.6941 Remote Similarity NPD4727 Phase 1
0.6939 Remote Similarity NPD4859 Phase 1
0.6936 Remote Similarity NPD5720 Discontinued
0.6933 Remote Similarity NPD6111 Discontinued
0.6927 Remote Similarity NPD6894 Phase 1
0.6923 Remote Similarity NPD1420 Approved
0.6923 Remote Similarity NPD1421 Approved
0.6919 Remote Similarity NPD6876 Approved
0.6919 Remote Similarity NPD6875 Approved
0.6905 Remote Similarity NPD2422 Clinical (unspecified phase)
0.6902 Remote Similarity NPD7280 Phase 3
0.6902 Remote Similarity NPD7281 Phase 3
0.6901 Remote Similarity NPD4210 Discontinued
0.6893 Remote Similarity NPD5677 Discontinued
0.6893 Remote Similarity NPD2904 Discontinued
0.689 Remote Similarity NPD1753 Discontinued
0.6886 Remote Similarity NPD6658 Clinical (unspecified phase)
0.6872 Remote Similarity NPD4582 Approved
0.6872 Remote Similarity NPD4583 Approved
0.6871 Remote Similarity NPD2157 Approved
0.6871 Remote Similarity NPD2653 Approved
0.6855 Remote Similarity NPD3637 Approved
0.6855 Remote Similarity NPD3636 Approved
0.6855 Remote Similarity NPD3635 Approved
0.6851 Remote Similarity NPD4498 Clinical (unspecified phase)
0.6848 Remote Similarity NPD2161 Phase 2
0.6848 Remote Similarity NPD1632 Clinical (unspecified phase)
0.6839 Remote Similarity NPD5457 Discontinued
0.6839 Remote Similarity NPD7248 Discontinued
0.6834 Remote Similarity NPD5676 Approved
0.6832 Remote Similarity NPD3145 Approved
0.6832 Remote Similarity NPD3144 Approved
0.6826 Remote Similarity NPD4236 Phase 3
0.6826 Remote Similarity NPD4237 Approved
0.6824 Remote Similarity NPD7019 Approved
0.6824 Remote Similarity NPD2335 Discontinued
0.6824 Remote Similarity NPD7020 Approved
0.6821 Remote Similarity NPD4004 Approved
0.6821 Remote Similarity NPD4002 Approved
0.6821 Remote Similarity NPD7497 Discontinued
0.6815 Remote Similarity NPD1669 Approved
0.6807 Remote Similarity NPD3656 Approved
0.6805 Remote Similarity NPD6666 Approved
0.6805 Remote Similarity NPD6667 Approved
0.6798 Remote Similarity NPD2042 Clinical (unspecified phase)
0.6798 Remote Similarity NPD6037 Discontinued
0.6798 Remote Similarity NPD2041 Clinical (unspecified phase)
0.6796 Remote Similarity NPD5966 Clinical (unspecified phase)
0.6788 Remote Similarity NPD8095 Phase 1
0.6786 Remote Similarity NPD4040 Phase 1
0.6784 Remote Similarity NPD6090 Discontinued
0.6782 Remote Similarity NPD7047 Phase 3
0.6778 Remote Similarity NPD5242 Approved
0.6776 Remote Similarity NPD3920 Phase 2
0.6774 Remote Similarity NPD2668 Approved

  Bioactivity similarity: Similar Natural Products in NPASS

Bioactivity similarity was calculated based on bioactivity descriptors of compounds. The bioactivity descriptors were calculated by a recently developed AI algorithm Chemical Checker (CC) [Nature Biotechnology, 38:1087–1096, 2020; Nature Communications, 12:3932, 2021], which evaluated bioactivity similarities at five levels:
A: chemistry similarity;
B: biological targets similarity;
C: networks similarity;
D: cell-based bioactivity similarity;
E: similarity based on clinical data.

Those 5 categories of CC bioactivity descriptors were calculated and then subjected to manifold projection using UMAP algorithm, to project all NPs on a 2-Dimensional space. The current NP was highlighted with a small circle in the 2-D map. Below figures: left-to-right, A-to-E.

A: chemistry similarity
B: biological targets similarity
C: networks similarity
D: cell-based bioactivity similarity
E: similarity based on clinical data