Structure

Physi-Chem Properties

Molecular Weight:  355.18
Volume:  367.885
LogP:  2.627
LogD:  3.025
LogS:  -2.674
# Rotatable Bonds:  4
TPSA:  40.16
# H-Bond Aceptor:  5
# H-Bond Donor:  0
# Rings:  4
# Heavy Atoms:  5

MedChem Properties

QED Drug-Likeness Score:  0.841
Synthetic Accessibility Score:  2.82
Fsp3:  0.429
Lipinski Rule-of-5:  Accepted
Pfizer Rule:  Accepted
GSK Rule:  Accepted
BMS Rule:  0
Golden Triangle Rule:  Accepted
Chelating Alert:  0
PAINS Alert:  0

ADMET Properties (ADMETlab2.0)

ADMET: Absorption

Caco-2 Permeability:  -5.131
MDCK Permeability:  2.739766932791099e-05
Pgp-inhibitor:  0.699
Pgp-substrate:  0.988
Human Intestinal Absorption (HIA):  0.003
20% Bioavailability (F20%):  0.198
30% Bioavailability (F30%):  0.323

ADMET: Distribution

Blood-Brain-Barrier Penetration (BBB):  0.984
Plasma Protein Binding (PPB):  71.91094970703125%
Volume Distribution (VD):  1.414
Pgp-substrate:  17.40007972717285%

ADMET: Metabolism

CYP1A2-inhibitor:  0.155
CYP1A2-substrate:  0.967
CYP2C19-inhibitor:  0.294
CYP2C19-substrate:  0.948
CYP2C9-inhibitor:  0.016
CYP2C9-substrate:  0.749
CYP2D6-inhibitor:  0.548
CYP2D6-substrate:  0.939
CYP3A4-inhibitor:  0.116
CYP3A4-substrate:  0.929

ADMET: Excretion

Clearance (CL):  11.606
Half-life (T1/2):  0.727

ADMET: Toxicity

hERG Blockers:  0.097
Human Hepatotoxicity (H-HT):  0.125
Drug-inuced Liver Injury (DILI):  0.784
AMES Toxicity:  0.076
Rat Oral Acute Toxicity:  0.655
Maximum Recommended Daily Dose:  0.962
Skin Sensitization:  0.202
Carcinogencity:  0.081
Eye Corrosion:  0.003
Eye Irritation:  0.017
Respiratory Toxicity:  0.955

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Similar NPs/Drugs  

  Natural Product: NPC210437

Natural Product ID:  NPC210437
Common Name*:   Tetrahydropalmatine
IUPAC Name:   (13aS)-2,3,9,10-tetramethoxy-6,8,13,13a-tetrahydro-5H-isoquinolino[2,1-b]isoquinoline
Synonyms:   (-)-Tetrahydropalmatine; L-Tetrahydropalmatine; Tetrahydropalmatine
Standard InCHIKey:  AEQDJSLRWYMAQI-KRWDZBQOSA-N
Standard InCHI:  InChI=1S/C21H25NO4/c1-23-18-6-5-13-9-17-15-11-20(25-3)19(24-2)10-14(15)7-8-22(17)12-16(13)21(18)26-4/h5-6,10-11,17H,7-9,12H2,1-4H3/t17-/m0/s1
SMILES:  COc1ccc2C[C@H]3c4cc(c(cc4CCN3Cc2c1OC)OC)OC
Synthetic Gene Cluster:   n.a.
ChEMBL Identifier:   CHEMBL487182
PubChem CID:   72301
Chemical Classification**:  
  • CHEMONTID:0000000 [Organic compounds]
    • [CHEMONTID:0000279] Alkaloids and derivatives
      • [CHEMONTID:0001909] Protoberberine alkaloids and derivatives

*Note: the InCHIKey will be temporarily assigned as the "Common Name" if no IUPAC name or alternative short name is available.
**Note: the Chemical Classification was calculated by NPClassifier Version 1.5. Reference: PMID:34662515.

  Species Source

Organism ID Organism Name Taxonomy Level Family SuperKingdom Isolation Part Collection Location Collection Time Reference
NPO29263 Tylopilus plumbeoviolaceus Species Boletaceae Eukaryota n.a. fruit body n.a. PMID[10785434]
NPO13757 Coptis japonica Species Ranunculaceae Eukaryota rhizomes n.a. n.a. PMID[11000020]
NPO29471 Achyrocline satureioides Species Asteraceae Eukaryota n.a. n.a. n.a. PMID[11858757]
NPO26006 Stephania rotunda Species Menispermaceae Eukaryota n.a. n.a. n.a. PMID[19299148]
NPO25345 Corydalis ternata Species Papaveraceae Eukaryota tubers n.a. n.a. PMID[20594848]
NPO13757 Coptis japonica Species Ranunculaceae Eukaryota n.a. rhizome n.a. PMID[21401114]
NPO827 Corydalis yanhusuo Species Papaveraceae Eukaryota n.a. n.a. n.a. PMID[22737858]
NPO827 Corydalis yanhusuo Species Papaveraceae Eukaryota n.a. n.a. n.a. PMID[23194502]
NPO13962 Corydalis turtschaninovii Species Papaveraceae Eukaryota n.a. rhizome n.a. PMID[25277281]
NPO29471 Achyrocline satureioides Species Asteraceae Eukaryota aerial parts Alpa Corral, Cordoba, Argentina 2008-Aug PMID[25517209]
NPO13962 Corydalis turtschaninovii Species Papaveraceae Eukaryota n.a. tuber n.a. PMID[25670016]
NPO14045 Corydalis decumbens Species Papaveraceae Eukaryota n.a. n.a. n.a. PMID[31599578]
NPO827 Corydalis yanhusuo Species Papaveraceae Eukaryota n.a. n.a. n.a. PMID[32058719]
NPO22151 Stephania pierrei Species Menispermaceae Eukaryota tubers n.a. n.a. PMID[8254346]
NPO22622 Coptis deltoidea Species Ranunculaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO827 Corydalis yanhusuo Species Papaveraceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO9266 Stephania delavayi Species Menispermaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO2341 Fibraurea recisa Species Menispermaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO13757 Coptis japonica Species Ranunculaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO24476 Phellodendron amurense Species Rutaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO14045 Corydalis decumbens Species Papaveraceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO24050 Stephania glabra Species Menispermaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO22242 Phellodendron chinense Species Rutaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO5649 Coptis chinensis Species Ranunculaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO28926 Corydalis tuberosa Species Papaveraceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO9266 Stephania delavayi Species Menispermaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO14045 Corydalis decumbens Species Papaveraceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO827 Corydalis yanhusuo Species Papaveraceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO13757 Coptis japonica Species Ranunculaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO22242 Phellodendron chinense Species Rutaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO22622 Coptis deltoidea Species Ranunculaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO28926 Corydalis tuberosa Species Papaveraceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO2341 Fibraurea recisa Species Menispermaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO24050 Stephania glabra Species Menispermaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO24476 Phellodendron amurense Species Rutaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO5649 Coptis chinensis Species Ranunculaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO24050 Stephania glabra Species Menispermaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO827 Corydalis yanhusuo Species Papaveraceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO22242 Phellodendron chinense Species Rutaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO24476 Phellodendron amurense Species Rutaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO5649 Coptis chinensis Species Ranunculaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO9266 Stephania delavayi Species Menispermaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO14045 Corydalis decumbens Species Papaveraceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO26538 Phellodendron chinese Species Rutaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO29008 Coptis teeta Species Ranunculaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO13757 Coptis japonica Species Ranunculaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO827 Corydalis yanhusuo Species Papaveraceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO22242 Phellodendron chinense Species Rutaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO13962 Corydalis turtschaninovii Species Papaveraceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO22622 Coptis deltoidea Species Ranunculaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO2341 Fibraurea recisa Species Menispermaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO24476 Phellodendron amurense Species Rutaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO5649 Coptis chinensis Species Ranunculaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO25345 Corydalis ternata Species Papaveraceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO14045 Corydalis decumbens Species Papaveraceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO22151 Stephania pierrei Species Menispermaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO29246 Ixeris repens Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO827 Corydalis yanhusuo Species Papaveraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO1327 Heliothis maritima Species 0ctuidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO29471 Achyrocline satureioides Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO25345 Corydalis ternata Species Papaveraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO19027 Passiflora coccinea Species Passifloraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO5902 Stephania bancroftii Species Menispermaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO29347 Hydnum aurantiacum Species Hydnaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO13757 Coptis japonica Species Ranunculaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO9266 Stephania delavayi Species Menispermaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO13528 Funneliformis mosseae Species Glomeraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO23550 Maytenus octogona Species Celastraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO23282 Russula paludosa Species Russulaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO23461 Medicago hispida Species Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO29008 Coptis teeta Species Ranunculaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO29263 Tylopilus plumbeoviolaceus Species Boletaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO26006 Stephania rotunda Species Menispermaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO23414 Karwinskia subcordata Species Rhamnaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO24183 Brickellia dentata Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO14045 Corydalis decumbens Species Papaveraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO29490 Taxillus yadoriki Species Loranthaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO24476 Phellodendron amurense Species Rutaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO13962 Corydalis turtschaninovii Species Papaveraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO22242 Phellodendron chinense Species Rutaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO24365 Hymenoxys ivesiana Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO17311 Penicillium vulpinum Species Aspergillaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO28926 Corydalis tuberosa Species Papaveraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO22622 Coptis deltoidea Species Ranunculaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO23885 Agathosma bisulca Species Rutaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO29206 Lycopodium chinense Species Lycopodiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO24050 Stephania glabra Species Menispermaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO29441 Eremophila oppositifolia Species Scrophulariaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO29086 Dovyalis hebecarpa Species Salicaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO22738 Horsfieldia iryaghedhi Species Myristicaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO5649 Coptis chinensis Species Ranunculaceae Eukaryota n.a. n.a. n.a. Database[UNPD]

☑ Note for Reference:
In addition to directly collecting NP source organism data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated them from below databases:
UNPD: Universal Natural Products Database [PMID: 23638153].
StreptomeDB: a database of streptomycetes natural products [PMID: 33051671].
TM-MC: a database of medicinal materials and chemical compounds in Northeast Asian traditional medicine [PMID: 26156871].
TCM@Taiwan: a Traditional Chinese Medicine database [PMID: 21253603].
TCMID: a Traditional Chinese Medicine database [PMID: 29106634].
TCMSP: The traditional Chinese medicine systems pharmacology database and analysis platform [PMID: 24735618].
HerDing: a herb recommendation system to treat diseases using genes and chemicals [PMID: 26980517].
MetaboLights: a metabolomics database [PMID: 27010336].
FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].

  NP Quantity Composition/Concentration

Organism ID NP ID Organism Material Preparation Organism Part NP Quantity (Standard) NP Quantity (Minimum) NP Quantity (Maximum) Quantity Unit Reference

☑ Note for Reference:
In addition to directly collecting NP quantitative data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated NP quantitative records for specific NP domains (e.g., NPS from foods or herbs) from domain-specific databases. These databases include:
DUKE: Dr. Duke's Phytochemical and Ethnobotanical Databases.
PHENOL EXPLORER: is the first comprehensive database on polyphenol content in foods [PMID: 24103452], its homepage can be accessed at here.
FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].

  Biological Activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference
NPT459 Individual Protein Human immunodeficiency virus type 1 reverse transcriptase Human immunodeficiency virus 1 IC50 > 200.0 ug.mL-1 PMID[486796]
NPT459 Individual Protein Human immunodeficiency virus type 1 reverse transcriptase Human immunodeficiency virus 1 Inhibition = 25.0 % PMID[486799]
NPT108 Individual Protein Estrogen receptor alpha Homo sapiens Activity = 118.84 % PMID[486800]
NPT108 Individual Protein Estrogen receptor alpha Homo sapiens Activity = 95.0 % PMID[486800]
NPT243 Individual Protein Dopamine D2 receptor Homo sapiens Ki > 5000.0 nM PMID[486802]
NPT242 Individual Protein Dopamine D1 receptor Homo sapiens Ki = 231.0 nM PMID[486802]
NPT242 Individual Protein Dopamine D1 receptor Homo sapiens Inhibition = 96.9 % PMID[486802]
NPT243 Individual Protein Dopamine D2 receptor Homo sapiens Inhibition = 85.4 % PMID[486802]
NPT290 Individual Protein Serotonin 2a (5-HT2a) receptor Homo sapiens Inhibition = 33.0 % PMID[486802]
NPT1788 Individual Protein Alpha-1a adrenergic receptor Homo sapiens Inhibition = 41.2 % PMID[486805]
NPT242 Individual Protein Dopamine D1 receptor Homo sapiens Ki = 153.0 nM PMID[486806]
NPT243 Individual Protein Dopamine D2 receptor Homo sapiens Ki = 1125.0 nM PMID[486806]
NPT244 Individual Protein Dopamine D3 receptor Homo sapiens Ki = 1371.0 nM PMID[486806]
NPT245 Individual Protein Dopamine D4 receptor Homo sapiens Ki > 1000.0 nM PMID[486806]
NPT1811 Individual Protein Dopamine D5 receptor Homo sapiens Ki = 305.0 nM PMID[486806]
NPT242 Individual Protein Dopamine D1 receptor Homo sapiens IC50 = 1630.0 nM PMID[486809]
NPT243 Individual Protein Dopamine D2 receptor Homo sapiens IC50 = 450.0 nM PMID[486809]
NPT242 Individual Protein Dopamine D1 receptor Homo sapiens Activity = -7.43 % PMID[486809]
NPT243 Individual Protein Dopamine D2 receptor Homo sapiens Activity = 3.51 % PMID[486809]
NPT6 Organism Plasmodium falciparum Plasmodium falciparum ED50 > 10000.0 ng/ml PMID[486797]
NPT6 Organism Plasmodium falciparum Plasmodium falciparum ED50 = 5020.0 ng/ml PMID[486797]
NPT6 Organism Plasmodium falciparum Plasmodium falciparum IC50 = 32600.0 nM PMID[486798]
NPT677 Individual Protein Coagulation factor III Homo sapiens IC50 = 22.78 nM PMID[486801]
NPT92 Individual Protein Serotonin 1a (5-HT1a) receptor Homo sapiens Ki > 5000.0 nM PMID[486802]
NPT92 Individual Protein Serotonin 1a (5-HT1a) receptor Homo sapiens Inhibition = 84.9 % PMID[486802]
NPT27 Others Unspecified log Pe = -4.7 n.a. PMID[486803]
NPT72 Individual Protein Solute carrier organic anion transporter family member 1B3 Homo sapiens Inhibition = 106.92 % PMID[486804]
NPT73 Individual Protein Solute carrier organic anion transporter family member 1B1 Homo sapiens Inhibition = 186.7 % PMID[486804]
NPT20555 ORGANISM SARS-CoV-2 Severe acute respiratory syndrome coronavirus 2 Inhibition = -11.62 % PMID[486807]
NPT20555 ORGANISM SARS-CoV-2 Severe acute respiratory syndrome coronavirus 2 Hit score = 0.0185 n.a. PMID[486808]
NPT20556 SINGLE PROTEIN Replicase polyprotein 1ab Severe acute respiratory syndrome coronavirus 2 Inhibition = 7.96 % PMID[486810]
NPT20555 ORGANISM SARS-CoV-2 Severe acute respiratory syndrome coronavirus 2 Inhibition = 0.09 % PMID[486811]

☑ Note for Activity Records:
☉ The quantitative biological activities were primarily integrated from ChEMBL (Version-30) database and were also directly collected from PubMed literature. PubMed PMID was provided as the reference link for each activity record.

  Chemically structural similarity: I. Similar Active Natural Products in NPASS

Top-200 similar NPs were calculated against the active-NP-set (includes 4,3285 NPs with experimentally-derived bioactivity available in NPASS)

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules. Tc lies between [0, 1] where '1' indicates the highest similarity. What is Tanimoto coefficient

●  The left chart: Distribution of similarity level between NPC210437 and all remaining natural products in the NPASS database.
●  The right table: Most similar natural products (Tc>=0.56 or Top200).

Similarity Score Similarity Level Natural Product ID
1.0 High Similarity NPC106295
1.0 High Similarity NPC51957
1.0 High Similarity NPC476144
1.0 High Similarity NPC16107
0.9928 High Similarity NPC7467
0.971 High Similarity NPC128019
0.971 High Similarity NPC136860
0.971 High Similarity NPC476567
0.9565 High Similarity NPC188163
0.9565 High Similarity NPC474915
0.9565 High Similarity NPC213206
0.9565 High Similarity NPC328750
0.9517 High Similarity NPC41178
0.9517 High Similarity NPC193949
0.9517 High Similarity NPC184026
0.9517 High Similarity NPC276588
0.9517 High Similarity NPC2413
0.9517 High Similarity NPC5238
0.9517 High Similarity NPC39701
0.9517 High Similarity NPC216459
0.9517 High Similarity NPC138487
0.9517 High Similarity NPC295691
0.9517 High Similarity NPC189266
0.9517 High Similarity NPC110416
0.9517 High Similarity NPC249797
0.9517 High Similarity NPC54379
0.9517 High Similarity NPC204828
0.9517 High Similarity NPC278799
0.9517 High Similarity NPC207757
0.9517 High Similarity NPC172765
0.9517 High Similarity NPC469817
0.9517 High Similarity NPC127674
0.9493 High Similarity NPC314682
0.9452 High Similarity NPC146288
0.932 High Similarity NPC234392
0.932 High Similarity NPC31311
0.9301 High Similarity NPC476151
0.9241 High Similarity NPC192768
0.9241 High Similarity NPC97221
0.9241 High Similarity NPC151895
0.9241 High Similarity NPC220858
0.9241 High Similarity NPC88249
0.9178 High Similarity NPC326316
0.9178 High Similarity NPC81733
0.9172 High Similarity NPC103379
0.9172 High Similarity NPC477565
0.9161 High Similarity NPC185838
0.9116 High Similarity NPC210148
0.9116 High Similarity NPC233029
0.9103 High Similarity NPC475959
0.9103 High Similarity NPC147390
0.9103 High Similarity NPC246587
0.9103 High Similarity NPC135538
0.9103 High Similarity NPC428
0.9103 High Similarity NPC24233
0.9103 High Similarity NPC476571
0.9079 High Similarity NPC238530
0.9079 High Similarity NPC276944
0.9079 High Similarity NPC232514
0.906 High Similarity NPC25084
0.906 High Similarity NPC247639
0.9041 High Similarity NPC92541
0.9034 High Similarity NPC191376
0.9034 High Similarity NPC321505
0.9034 High Similarity NPC179825
0.902 High Similarity NPC264850
0.902 High Similarity NPC13916
0.9 High Similarity NPC476572
0.8993 High Similarity NPC325871
0.8993 High Similarity NPC80129
0.8993 High Similarity NPC99659
0.8993 High Similarity NPC187022
0.8954 High Similarity NPC24465
0.8919 High Similarity NPC476579
0.8919 High Similarity NPC476568
0.8904 High Similarity NPC144863
0.8897 High Similarity NPC130926
0.8867 High Similarity NPC93593
0.8841 High Similarity NPC160193
0.8816 High Similarity NPC111485
0.8816 High Similarity NPC216816
0.8808 High Similarity NPC203784
0.8808 High Similarity NPC170503
0.8808 High Similarity NPC126519
0.88 High Similarity NPC2295
0.88 High Similarity NPC477564
0.879 High Similarity NPC317145
0.879 High Similarity NPC10908
0.879 High Similarity NPC76682
0.879 High Similarity NPC198498
0.879 High Similarity NPC276890
0.879 High Similarity NPC115284
0.879 High Similarity NPC63646
0.879 High Similarity NPC317439
0.879 High Similarity NPC227060
0.8784 High Similarity NPC219162
0.8784 High Similarity NPC207824
0.8784 High Similarity NPC60538
0.8766 High Similarity NPC475393
0.8758 High Similarity NPC266753
0.8758 High Similarity NPC160298
0.8758 High Similarity NPC306902
0.8758 High Similarity NPC27410
0.8758 High Similarity NPC166014
0.8758 High Similarity NPC232924
0.8758 High Similarity NPC477559
0.8742 High Similarity NPC244112
0.8734 High Similarity NPC251580
0.8734 High Similarity NPC2314
0.8734 High Similarity NPC12424
0.8734 High Similarity NPC129518
0.8734 High Similarity NPC41376
0.8716 High Similarity NPC130941
0.8696 High Similarity NPC172403
0.8693 High Similarity NPC477080
0.8671 High Similarity NPC253429
0.8667 High Similarity NPC76213
0.8667 High Similarity NPC277669
0.8654 High Similarity NPC24264
0.8654 High Similarity NPC250846
0.8654 High Similarity NPC256012
0.8654 High Similarity NPC42549
0.8654 High Similarity NPC268503
0.8654 High Similarity NPC240841
0.8654 High Similarity NPC476432
0.8654 High Similarity NPC317272
0.8649 High Similarity NPC253883
0.8649 High Similarity NPC90844
0.8649 High Similarity NPC95075
0.8645 High Similarity NPC324144
0.8625 High Similarity NPC241704
0.8625 High Similarity NPC293093
0.8625 High Similarity NPC222524
0.8609 High Similarity NPC470924
0.8609 High Similarity NPC37272
0.86 High Similarity NPC274026
0.8599 High Similarity NPC205421
0.8599 High Similarity NPC474931
0.8599 High Similarity NPC306555
0.8599 High Similarity NPC158376
0.8599 High Similarity NPC81218
0.8599 High Similarity NPC145832
0.8599 High Similarity NPC247389
0.8599 High Similarity NPC12053
0.8599 High Similarity NPC117188
0.859 High Similarity NPC212794
0.859 High Similarity NPC96603
0.859 High Similarity NPC225774
0.859 High Similarity NPC196447
0.859 High Similarity NPC136508
0.859 High Similarity NPC121275
0.859 High Similarity NPC477563
0.859 High Similarity NPC13504
0.859 High Similarity NPC302527
0.859 High Similarity NPC16805
0.859 High Similarity NPC284183
0.859 High Similarity NPC306843
0.859 High Similarity NPC167546
0.859 High Similarity NPC253043
0.859 High Similarity NPC78222
0.859 High Similarity NPC4138
0.8581 High Similarity NPC60186
0.8544 High Similarity NPC83198
0.8544 High Similarity NPC204908
0.8535 High Similarity NPC219341
0.8531 High Similarity NPC11147
0.8519 High Similarity NPC243454
0.8519 High Similarity NPC32154
0.8519 High Similarity NPC475479
0.8497 Intermediate Similarity NPC78733
0.8493 Intermediate Similarity NPC470925
0.8487 Intermediate Similarity NPC82285
0.8487 Intermediate Similarity NPC148898
0.8487 Intermediate Similarity NPC133011
0.8481 Intermediate Similarity NPC298979
0.8481 Intermediate Similarity NPC210918
0.8466 Intermediate Similarity NPC239584
0.8452 Intermediate Similarity NPC118804
0.8452 Intermediate Similarity NPC106786
0.8442 Intermediate Similarity NPC323443
0.8442 Intermediate Similarity NPC147091
0.8442 Intermediate Similarity NPC180756
0.8428 Intermediate Similarity NPC241055
0.8428 Intermediate Similarity NPC66573
0.8418 Intermediate Similarity NPC304659
0.8418 Intermediate Similarity NPC86144
0.8418 Intermediate Similarity NPC476573
0.8418 Intermediate Similarity NPC81247
0.8418 Intermediate Similarity NPC35627
0.8415 Intermediate Similarity NPC8836
0.8415 Intermediate Similarity NPC15414
0.8415 Intermediate Similarity NPC42663
0.8415 Intermediate Similarity NPC328155
0.8415 Intermediate Similarity NPC271013
0.8415 Intermediate Similarity NPC251735
0.8415 Intermediate Similarity NPC299990
0.8415 Intermediate Similarity NPC182052
0.8415 Intermediate Similarity NPC279228
0.8415 Intermediate Similarity NPC54654
0.8415 Intermediate Similarity NPC222661

  Chemically structural similarity: II. Similar Clinical/Approved Drugs

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules.

●  The left chart: Distribution of similarity level between NPC210437 and all drugs/candidates.
●  The right table: Most similar clinical/approved drugs (Tc>=0.56 or Top200).

Similarity Score Similarity Level Drug ID Developmental Stage
1.0 High Similarity NPD4584 Approved
0.9565 High Similarity NPD4664 Clinical (unspecified phase)
0.8993 High Similarity NPD7298 Approved
0.8792 High Similarity NPD4017 Approved
0.879 High Similarity NPD8099 Discontinued
0.879 High Similarity NPD8251 Approved
0.879 High Similarity NPD8252 Approved
0.8784 High Similarity NPD3640 Phase 3
0.8784 High Similarity NPD3639 Approved
0.8784 High Similarity NPD3641 Approved
0.8734 High Similarity NPD8156 Discontinued
0.8675 High Similarity NPD4773 Phase 2
0.8675 High Similarity NPD4772 Phase 2
0.8671 High Similarity NPD6029 Clinical (unspecified phase)
0.8671 High Similarity NPD6028 Clinical (unspecified phase)
0.8533 High Similarity NPD6030 Approved
0.8533 High Similarity NPD6031 Approved
0.8452 Intermediate Similarity NPD6788 Approved
0.8415 Intermediate Similarity NPD8054 Approved
0.8415 Intermediate Similarity NPD8053 Approved
0.8408 Intermediate Similarity NPD7201 Clinical (unspecified phase)
0.838 Intermediate Similarity NPD5718 Phase 2
0.8354 Intermediate Similarity NPD6107 Approved
0.8333 Intermediate Similarity NPD3124 Discontinued
0.831 Intermediate Similarity NPD2669 Clinical (unspecified phase)
0.82 Intermediate Similarity NPD5241 Discontinued
0.8187 Intermediate Similarity NPD4010 Discontinued
0.8125 Intermediate Similarity NPD7802 Discontinued
0.8112 Intermediate Similarity NPD5752 Clinical (unspecified phase)
0.8095 Intermediate Similarity NPD6895 Approved
0.8095 Intermediate Similarity NPD6896 Approved
0.8089 Intermediate Similarity NPD6818 Clinical (unspecified phase)
0.8086 Intermediate Similarity NPD2898 Approved
0.8079 Intermediate Similarity NPD5084 Clinical (unspecified phase)
0.8075 Intermediate Similarity NPD4166 Phase 2
0.8069 Intermediate Similarity NPD4474 Approved
0.8069 Intermediate Similarity NPD4475 Approved
0.8049 Intermediate Similarity NPD5312 Approved
0.8049 Intermediate Similarity NPD5313 Approved
0.8039 Intermediate Similarity NPD1754 Clinical (unspecified phase)
0.7975 Intermediate Similarity NPD4481 Phase 3
0.7974 Intermediate Similarity NPD2420 Approved
0.7974 Intermediate Similarity NPD2421 Approved
0.7974 Intermediate Similarity NPD7598 Phase 2
0.7963 Intermediate Similarity NPD3051 Approved
0.7937 Intermediate Similarity NPD7831 Phase 2
0.7937 Intermediate Similarity NPD7833 Phase 2
0.7937 Intermediate Similarity NPD7832 Clinical (unspecified phase)
0.7927 Intermediate Similarity NPD5602 Clinical (unspecified phase)
0.7922 Intermediate Similarity NPD1424 Approved
0.7914 Intermediate Similarity NPD2969 Approved
0.7914 Intermediate Similarity NPD2970 Approved
0.7908 Intermediate Similarity NPD6783 Clinical (unspecified phase)
0.7895 Intermediate Similarity NPD6748 Discontinued
0.7891 Intermediate Similarity NPD3110 Approved
0.7891 Intermediate Similarity NPD3109 Approved
0.7881 Intermediate Similarity NPD7045 Clinical (unspecified phase)
0.7866 Intermediate Similarity NPD27 Approved
0.7866 Intermediate Similarity NPD2489 Approved
0.7853 Intermediate Similarity NPD6071 Discontinued
0.7844 Intermediate Similarity NPD6297 Approved
0.7843 Intermediate Similarity NPD5307 Clinical (unspecified phase)
0.7841 Intermediate Similarity NPD8095 Phase 1
0.7834 Intermediate Similarity NPD7261 Clinical (unspecified phase)
0.7829 Intermediate Similarity NPD5177 Phase 3
0.7812 Intermediate Similarity NPD5978 Approved
0.7812 Intermediate Similarity NPD2560 Approved
0.7812 Intermediate Similarity NPD2563 Approved
0.7812 Intermediate Similarity NPD5977 Approved
0.7778 Intermediate Similarity NPD3977 Clinical (unspecified phase)
0.7756 Intermediate Similarity NPD3647 Clinical (unspecified phase)
0.7748 Intermediate Similarity NPD1632 Clinical (unspecified phase)
0.7736 Intermediate Similarity NPD7110 Phase 1
0.7736 Intermediate Similarity NPD7109 Clinical (unspecified phase)
0.7716 Intermediate Similarity NPD4055 Discovery
0.7677 Intermediate Similarity NPD7124 Phase 2
0.7677 Intermediate Similarity NPD3845 Phase 1
0.767 Intermediate Similarity NPD7667 Clinical (unspecified phase)
0.7662 Intermediate Similarity NPD6658 Clinical (unspecified phase)
0.7661 Intermediate Similarity NPD6853 Approved
0.7661 Intermediate Similarity NPD6851 Approved
0.7661 Intermediate Similarity NPD6618 Phase 2
0.7597 Intermediate Similarity NPD4162 Approved
0.7595 Intermediate Similarity NPD6662 Clinical (unspecified phase)
0.759 Intermediate Similarity NPD6688 Approved
0.759 Intermediate Similarity NPD6687 Approved
0.7586 Intermediate Similarity NPD7258 Clinical (unspecified phase)
0.7564 Intermediate Similarity NPD2422 Clinical (unspecified phase)
0.7546 Intermediate Similarity NPD4581 Clinical (unspecified phase)
0.7544 Intermediate Similarity NPD8453 Clinical (unspecified phase)
0.7534 Intermediate Similarity NPD4098 Discontinued
0.7529 Intermediate Similarity NPD7906 Approved
0.7529 Intermediate Similarity NPD7291 Discontinued
0.75 Intermediate Similarity NPD2971 Approved
0.75 Intermediate Similarity NPD7313 Approved
0.75 Intermediate Similarity NPD7311 Approved
0.75 Intermediate Similarity NPD3534 Clinical (unspecified phase)
0.75 Intermediate Similarity NPD7312 Approved
0.75 Intermediate Similarity NPD5917 Clinical (unspecified phase)
0.75 Intermediate Similarity NPD2968 Approved
0.75 Intermediate Similarity NPD7310 Approved
0.7486 Intermediate Similarity NPD4420 Approved
0.7484 Intermediate Similarity NPD4237 Approved
0.7484 Intermediate Similarity NPD3060 Approved
0.7484 Intermediate Similarity NPD4236 Phase 3
0.7483 Intermediate Similarity NPD7905 Discontinued
0.7483 Intermediate Similarity NPD2668 Approved
0.7483 Intermediate Similarity NPD2667 Approved
0.7482 Intermediate Similarity NPD5283 Phase 1
0.7467 Intermediate Similarity NPD2674 Phase 3
0.7467 Intermediate Similarity NPD554 Clinical (unspecified phase)
0.7457 Intermediate Similarity NPD7309 Approved
0.7453 Intermediate Similarity NPD6876 Approved
0.7453 Intermediate Similarity NPD6875 Approved
0.7451 Intermediate Similarity NPD1753 Discontinued
0.7448 Intermediate Similarity NPD2230 Approved
0.7448 Intermediate Similarity NPD2232 Approved
0.7448 Intermediate Similarity NPD2233 Approved
0.7436 Intermediate Similarity NPD5754 Discontinued
0.7421 Intermediate Similarity NPD6090 Discontinued
0.7418 Intermediate Similarity NPD5006 Approved
0.7418 Intermediate Similarity NPD5005 Approved
0.741 Intermediate Similarity NPD5677 Discontinued
0.74 Intermediate Similarity NPD6812 Clinical (unspecified phase)
0.7399 Intermediate Similarity NPD7281 Phase 3
0.7399 Intermediate Similarity NPD7280 Phase 3
0.7399 Intermediate Similarity NPD4578 Approved
0.7399 Intermediate Similarity NPD4577 Approved
0.7391 Intermediate Similarity NPD4005 Discontinued
0.7389 Intermediate Similarity NPD5160 Discontinued
0.7389 Intermediate Similarity NPD3692 Discontinued
0.7375 Intermediate Similarity NPD5976 Discontinued
0.7371 Intermediate Similarity NPD4663 Approved
0.7368 Intermediate Similarity NPD3920 Phase 2
0.7362 Intermediate Similarity NPD5720 Discontinued
0.7362 Intermediate Similarity NPD7945 Clinical (unspecified phase)
0.7353 Intermediate Similarity NPD4498 Clinical (unspecified phase)
0.7353 Intermediate Similarity NPD5708 Clinical (unspecified phase)
0.7351 Intermediate Similarity NPD3530 Approved
0.7351 Intermediate Similarity NPD3532 Approved
0.7351 Intermediate Similarity NPD3531 Approved
0.7346 Intermediate Similarity NPD1337 Clinical (unspecified phase)
0.7341 Intermediate Similarity NPD7132 Clinical (unspecified phase)
0.732 Intermediate Similarity NPD4579 Clinical (unspecified phase)
0.7317 Intermediate Similarity NPD4585 Approved
0.7314 Intermediate Similarity NPD5087 Clinical (unspecified phase)
0.7303 Intermediate Similarity NPD3923 Approved
0.7303 Intermediate Similarity NPD3921 Approved
0.7303 Intermediate Similarity NPD3922 Approved
0.7303 Intermediate Similarity NPD3924 Approved
0.7303 Intermediate Similarity NPD2238 Phase 2
0.7292 Intermediate Similarity NPD3445 Approved
0.7292 Intermediate Similarity NPD3444 Approved
0.7292 Intermediate Similarity NPD3443 Approved
0.7285 Intermediate Similarity NPD5111 Phase 2
0.7285 Intermediate Similarity NPD5110 Phase 2
0.7285 Intermediate Similarity NPD3144 Approved
0.7285 Intermediate Similarity NPD3145 Approved
0.7285 Intermediate Similarity NPD5109 Approved
0.7279 Intermediate Similarity NPD1420 Approved
0.7279 Intermediate Similarity NPD1421 Approved
0.7279 Intermediate Similarity NPD1669 Approved
0.7273 Intermediate Similarity NPD2200 Suspended
0.7267 Intermediate Similarity NPD4727 Phase 1
0.7267 Intermediate Similarity NPD1914 Approved
0.7267 Intermediate Similarity NPD2122 Discontinued
0.725 Intermediate Similarity NPD4123 Phase 3
0.7249 Intermediate Similarity NPD3815 Phase 1
0.7249 Intermediate Similarity NPD3816 Phase 1
0.7247 Intermediate Similarity NPD5525 Clinical (unspecified phase)
0.7247 Intermediate Similarity NPD2490 Approved
0.7247 Intermediate Similarity NPD2488 Approved
0.7246 Intermediate Similarity NPD7400 Phase 3
0.7244 Intermediate Similarity NPD3656 Approved
0.7238 Intermediate Similarity NPD7034 Discontinued
0.723 Intermediate Similarity NPD2922 Phase 1
0.7226 Intermediate Similarity NPD2156 Approved
0.7226 Intermediate Similarity NPD2155 Approved
0.7226 Intermediate Similarity NPD2154 Approved
0.7225 Intermediate Similarity NPD6996 Clinical (unspecified phase)
0.7222 Intermediate Similarity NPD2486 Discontinued
0.7222 Intermediate Similarity NPD4210 Discontinued
0.7215 Intermediate Similarity NPD6331 Phase 2
0.7212 Intermediate Similarity NPD5773 Approved
0.7212 Intermediate Similarity NPD2978 Approved
0.7212 Intermediate Similarity NPD5772 Approved
0.7212 Intermediate Similarity NPD2977 Approved
0.7208 Intermediate Similarity NPD2492 Phase 1
0.7208 Intermediate Similarity NPD2989 Phase 2
0.7208 Intermediate Similarity NPD2986 Phase 2
0.7208 Intermediate Similarity NPD2653 Approved
0.7197 Intermediate Similarity NPD1372 Clinical (unspecified phase)
0.7195 Intermediate Similarity NPD6386 Approved
0.7195 Intermediate Similarity NPD6385 Approved
0.7193 Intermediate Similarity NPD5938 Phase 3
0.7192 Intermediate Similarity NPD3294 Phase 2
0.7178 Intermediate Similarity NPD6357 Discontinued
0.7172 Intermediate Similarity NPD2594 Approved
0.7172 Intermediate Similarity NPD2595 Approved
0.7161 Intermediate Similarity NPD6111 Discontinued

  Bioactivity similarity: Similar Natural Products in NPASS

Bioactivity similarity was calculated based on bioactivity descriptors of compounds. The bioactivity descriptors were calculated by a recently developed AI algorithm Chemical Checker (CC) [Nature Biotechnology, 38:1087–1096, 2020; Nature Communications, 12:3932, 2021], which evaluated bioactivity similarities at five levels:
A: chemistry similarity;
B: biological targets similarity;
C: networks similarity;
D: cell-based bioactivity similarity;
E: similarity based on clinical data.

Those 5 categories of CC bioactivity descriptors were calculated and then subjected to manifold projection using UMAP algorithm, to project all NPs on a 2-Dimensional space. The current NP was highlighted with a small circle in the 2-D map. Below figures: left-to-right, A-to-E.

A: chemistry similarity
B: biological targets similarity
C: networks similarity
D: cell-based bioactivity similarity
E: similarity based on clinical data