Structure

Physi-Chem Properties

Molecular Weight:  281.14
Volume:  298.417
LogP:  3.114
LogD:  2.833
LogS:  -1.919
# Rotatable Bonds:  1
TPSA:  32.7
# H-Bond Aceptor:  3
# H-Bond Donor:  1
# Rings:  4
# Heavy Atoms:  3

MedChem Properties

QED Drug-Likeness Score:  0.871
Synthetic Accessibility Score:  2.947
Fsp3:  0.333
Lipinski Rule-of-5:  Accepted
Pfizer Rule:  Rejected
GSK Rule:  Accepted
BMS Rule:  0
Golden Triangle Rule:  Accepted
Chelating Alert:  1
PAINS Alert:  0

ADMET Properties (ADMETlab2.0)

ADMET: Absorption

Caco-2 Permeability:  -4.676
MDCK Permeability:  2.160810436180327e-05
Pgp-inhibitor:  0.029
Pgp-substrate:  0.887
Human Intestinal Absorption (HIA):  0.003
20% Bioavailability (F20%):  0.017
30% Bioavailability (F30%):  0.179

ADMET: Distribution

Blood-Brain-Barrier Penetration (BBB):  0.997
Plasma Protein Binding (PPB):  89.76663970947266%
Volume Distribution (VD):  2.425
Pgp-substrate:  7.244935035705566%

ADMET: Metabolism

CYP1A2-inhibitor:  0.827
CYP1A2-substrate:  0.926
CYP2C19-inhibitor:  0.091
CYP2C19-substrate:  0.898
CYP2C9-inhibitor:  0.021
CYP2C9-substrate:  0.607
CYP2D6-inhibitor:  0.783
CYP2D6-substrate:  0.917
CYP3A4-inhibitor:  0.086
CYP3A4-substrate:  0.866

ADMET: Excretion

Clearance (CL):  9.334
Half-life (T1/2):  0.397

ADMET: Toxicity

hERG Blockers:  0.623
Human Hepatotoxicity (H-HT):  0.135
Drug-inuced Liver Injury (DILI):  0.155
AMES Toxicity:  0.815
Rat Oral Acute Toxicity:  0.85
Maximum Recommended Daily Dose:  0.96
Skin Sensitization:  0.374
Carcinogencity:  0.076
Eye Corrosion:  0.003
Eye Irritation:  0.013
Respiratory Toxicity:  0.882

Download Data

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General Info & Identifiers & Properties  
Structure MOL file  
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Similar NPs/Drugs  

  Natural Product: NPC27410

Natural Product ID:  NPC27410
Common Name*:   N-Methylasimilobine
IUPAC Name:   (6aR)-1-methoxy-6-methyl-5,6,6a,7-tetrahydro-4H-dibenzo[de,g]quinoline-2-ol
Synonyms:   N-Methylasimilobine
Standard InCHIKey:  AKXOIHNFHOEPHN-CQSZACIVSA-N
Standard InCHI:  InChI=1S/C18H19NO2/c1-19-8-7-12-10-15(20)18(21-2)17-13-6-4-3-5-11(13)9-14(19)16(12)17/h3-6,10,14,20H,7-9H2,1-2H3/t14-/m1/s1
SMILES:  CN1CCc2cc(c(c3-c4ccccc4C[C@@H]1c23)OC)O
Synthetic Gene Cluster:   n.a.
ChEMBL Identifier:   CHEMBL2316499
PubChem CID:   197017
Chemical Classification**:  
  • CHEMONTID:0000000 [Organic compounds]
    • [CHEMONTID:0000279] Alkaloids and derivatives
      • [CHEMONTID:0000381] Aporphines

*Note: the InCHIKey will be temporarily assigned as the "Common Name" if no IUPAC name or alternative short name is available.
**Note: the Chemical Classification was calculated by NPClassifier Version 1.5. Reference: PMID:34662515.

  Species Source

Organism ID Organism Name Taxonomy Level Family SuperKingdom Isolation Part Collection Location Collection Time Reference
NPO19242 Eucalyptus albens Species Myrtaceae Eukaryota flowers n.a. n.a. PMID[10075775]
NPO11164 Renealmia alpinia Species Zingiberaceae Eukaryota n.a. n.a. n.a. PMID[10479331]
NPO19436 Annona cherimola Species Annonaceae Eukaryota Seeds n.a. n.a. PMID[15387664]
NPO4368 Magnolia officinalis Species Magnoliaceae Eukaryota n.a. n.a. n.a. PMID[1659613]
NPO4368 Magnolia officinalis Species Magnoliaceae Eukaryota stem bark n.a. n.a. PMID[17918910]
NPO11791 Magnolia obovata Species Magnoliaceae Eukaryota n.a. stem n.a. PMID[18175990]
NPO19083 Alstonia angustiloba Species Apocynaceae Eukaryota n.a. n.a. n.a. PMID[18524603]
NPO4368 Magnolia officinalis Species Magnoliaceae Eukaryota Stems; Barks n.a. n.a. PMID[19086868]
NPO3478 Nelumbo nucifera Species Nelumbonaceae Eukaryota n.a. n.a. n.a. PMID[19919095]
NPO17759 Rhododendron mucronulatum Species Ericaceae Eukaryota n.a. stem n.a. PMID[21443171]
NPO11791 Magnolia obovata Species Magnoliaceae Eukaryota n.a. n.a. n.a. PMID[21625478]
NPO3478 Nelumbo nucifera Species Nelumbonaceae Eukaryota flower buds and leaves Khon Kaen province, Thailand 2010 PMID[23270663]
NPO18602 Melampodium leucanthum Species Asteraceae Eukaryota n.a. n.a. n.a. PMID[23501116]
NPO3478 Nelumbo nucifera Species Nelumbonaceae Eukaryota Leaves n.a. n.a. PMID[23642481]
NPO4368 Magnolia officinalis Species Magnoliaceae Eukaryota n.a. bark n.a. PMID[23823874]
NPO18602 Melampodium leucanthum Species Asteraceae Eukaryota leaves and branches San Antonio, Texas 2004-JUN PMID[25685941]
NPO18602 Melampodium leucanthum Species Asteraceae Eukaryota leaves and branches n.a. n.a. PMID[25685941]
NPO17296 Beesia calthifolia Species Ranunculaceae Eukaryota n.a. n.a. n.a. PMID[26238319]
NPO3478 Nelumbo nucifera Species Nelumbonaceae Eukaryota Flowers n.a. n.a. PMID[26462418]
NPO4368 Magnolia officinalis Species Magnoliaceae Eukaryota n.a. n.a. n.a. PMID[28485933]
NPO18676 Clerodendrum trichotomum Species Lamiaceae Eukaryota Roots n.a. n.a. PMID[29924604]
NPO11164 Renealmia alpinia Species Zingiberaceae Eukaryota n.a. Suriname rainforest n.a. PMID[9428162]
NPO3478 Nelumbo nucifera Species Nelumbonaceae Eukaryota Fruit n.a. n.a. Database[FooDB]
NPO3478 Nelumbo nucifera Species Nelumbonaceae Eukaryota Rhizome n.a. n.a. Database[FooDB]
NPO19436 Annona cherimola Species Annonaceae Eukaryota Seed n.a. n.a. Database[FooDB]
NPO3478 Nelumbo nucifera Species Nelumbonaceae Eukaryota Seed n.a. n.a. Database[FooDB]
NPO3478 Nelumbo nucifera Species Nelumbonaceae Eukaryota n.a. n.a. Database[FooDB]
NPO19436 Annona cherimola Species Annonaceae Eukaryota n.a. n.a. Database[FooDB]
NPO19436 Annona cherimola Species Annonaceae Eukaryota n.a. n.a. Database[FooDB]
NPO19436 Annona cherimola Species Annonaceae Eukaryota Fruit n.a. n.a. Database[FooDB]
NPO17759 Rhododendron mucronulatum Species Ericaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO18765 Juniperus scopulorum Species Cupressaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO3478 Nelumbo nucifera Species Nelumbonaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO11791 Magnolia obovata Species Magnoliaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO4368 Magnolia officinalis Species Magnoliaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO1783 Euonymus fortunei Species Celastraceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO13737 Tephroseris kirilowii Species Asteraceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO19769 Boschniakia rossica Species Orobanchaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO17296 Beesia calthifolia Species Ranunculaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO13737 Tephroseris kirilowii Species Asteraceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO18765 Juniperus scopulorum Species Cupressaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO11791 Magnolia obovata Species Magnoliaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO24402.1 Coffea liberica var. dewevrei Varieties Rubiaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO17759 Rhododendron mucronulatum Species Ericaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO14233 Ormosia dasycarpa Species Limoniidae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO19769 Boschniakia rossica Species Orobanchaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO3478 Nelumbo nucifera Species Nelumbonaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO1783 Euonymus fortunei Species Celastraceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO4368 Magnolia officinalis Species Magnoliaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO18676 Clerodendrum trichotomum Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO11967 Delphinium giraldii Species Ranunculaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO13358 Piper brachystachyum Species Piperaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO18765 Juniperus scopulorum Species Cupressaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO19769 Boschniakia rossica Species Orobanchaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO17759 Rhododendron mucronulatum Species Ericaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO11791 Magnolia obovata Species Magnoliaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO4368 Magnolia officinalis Species Magnoliaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO3478 Nelumbo nucifera Species Nelumbonaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO11791 Magnolia obovata Species Magnoliaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO3478 Nelumbo nucifera Species Nelumbonaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO4368 Magnolia officinalis Species Magnoliaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO29531 Lupinus cosentinii Species Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO19242 Eucalyptus albens Species Myrtaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO4368 Magnolia officinalis Species Magnoliaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO18533 Delisea elegans Species Bonnemaisoniaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO17354 Micromonospora echinospora Species Micromonosporaceae Bacteria n.a. n.a. n.a. Database[UNPD]
NPO19371 Costasiella ocellifera Species Costasiellidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO19170 Lasianthaea podocephala Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO5455 Euploca racemosa Species Heliotropiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO17759 Rhododendron mucronulatum Species Ericaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO18048 Phlomis crinita Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO24402.1 Coffea liberica var. dewevrei Varieties Rubiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO4679 Hedysarum gmelini Species Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO17630 Helenium integrifolium Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO29450 Streptomyces parvisporogenes Species Streptomycetaceae Bacteria n.a. n.a. n.a. Database[UNPD]
NPO11967 Delphinium giraldii Species Ranunculaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO9906 Zephyranthes flava Species Amaryllidaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO968 Artemisia pectinata Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO12223 Stellaria media Species Caryophyllaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO12870 Curcuma aeruginosa Species Zingiberaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO18765 Juniperus scopulorum Species Cupressaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO18424 Selinum libanotis Species Apiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO17114 Streptomyces melanogenes Species Streptomycetaceae Bacteria n.a. n.a. n.a. Database[UNPD]
NPO25370 Botrychium ternatum Species Ophioglossaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO16981 Gutierrezia dracunculoides Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO18927 Clinacanthus nutans Species Acanthaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO16135 Pestalotiopsis oenotherae Species Sporocadaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO3478 Nelumbo nucifera Species Nelumbonaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO15127 Senecio congestus Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO1783 Euonymus fortunei Species Celastraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO18262 Aspergillus microcysticus Species Aspergillaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO15802 Papaver pseudocanescens Species Papaveraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO18676 Clerodendrum trichotomum Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO18169 Creosphaeria sassafras Species Xylariaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO11791 Magnolia obovata Species Magnoliaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO17296 Beesia calthifolia Species Ranunculaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO13737 Tephroseris kirilowii Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO16325 Sideritis dasygnaphala Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO19083 Alstonia angustiloba Species Apocynaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO19436 Annona cherimola Species Annonaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO19572 Pellacalyx axillaris Species Rhizophoraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO19709 Pseudocyphellaria australiensis Species Lobariaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO14233 Ormosia dasycarpa Species Limoniidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO11164 Renealmia alpinia Species Zingiberaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO17499 Bursera kerberi Species Burseraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO13358 Piper brachystachyum Species Piperaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO18602 Melampodium leucanthum Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO11646 Morella pensylvanica Species Myricaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO11081 Baccharis grandicapitulata Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO17230 Psidium acutangulum Species Myrtaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO18348 Crotalaria stolzii Species Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO12914 Sarcophyton flexuosum Species Alcyoniidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO19769 Boschniakia rossica Species Orobanchaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO8172 Emericellopsis minima Species n.a. Eukaryota n.a. n.a. n.a. Database[UNPD]

☑ Note for Reference:
In addition to directly collecting NP source organism data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated them from below databases:
UNPD: Universal Natural Products Database [PMID: 23638153].
StreptomeDB: a database of streptomycetes natural products [PMID: 33051671].
TM-MC: a database of medicinal materials and chemical compounds in Northeast Asian traditional medicine [PMID: 26156871].
TCM@Taiwan: a Traditional Chinese Medicine database [PMID: 21253603].
TCMID: a Traditional Chinese Medicine database [PMID: 29106634].
TCMSP: The traditional Chinese medicine systems pharmacology database and analysis platform [PMID: 24735618].
HerDing: a herb recommendation system to treat diseases using genes and chemicals [PMID: 26980517].
MetaboLights: a metabolomics database [PMID: 27010336].
FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].

  NP Quantity Composition/Concentration

Organism ID NP ID Organism Material Preparation Organism Part NP Quantity (Standard) NP Quantity (Minimum) NP Quantity (Maximum) Quantity Unit Reference

☑ Note for Reference:
In addition to directly collecting NP quantitative data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated NP quantitative records for specific NP domains (e.g., NPS from foods or herbs) from domain-specific databases. These databases include:
DUKE: Dr. Duke's Phytochemical and Ethnobotanical Databases.
PHENOL EXPLORER: is the first comprehensive database on polyphenol content in foods [PMID: 24103452], its homepage can be accessed at here.
FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].

  Biological Activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference
NPT43 Individual Protein Tyrosinase Agaricus bisporus Inhibition < 3.0 % PMID[567745]
NPT2 Others Unspecified Inhibition = 19.7 % PMID[567745]
NPT2 Others Unspecified Inhibition = 15.4 % PMID[567745]
NPT20529 NON-MOLECULAR NON-PROTEIN TARGET n.a. FC = 0.88 n.a. PMID[567745]
NPT20529 NON-MOLECULAR NON-PROTEIN TARGET n.a. FC = 0.96 n.a. PMID[567745]
NPT20529 NON-MOLECULAR NON-PROTEIN TARGET n.a. FC = 1.1 n.a. PMID[567745]
NPT20529 NON-MOLECULAR NON-PROTEIN TARGET n.a. FC = 0.49 n.a. PMID[567745]
NPT20529 NON-MOLECULAR NON-PROTEIN TARGET n.a. FC = 0.72 n.a. PMID[567745]
NPT20529 NON-MOLECULAR NON-PROTEIN TARGET n.a. FC = 0.79 n.a. PMID[567745]
NPT20529 NON-MOLECULAR NON-PROTEIN TARGET n.a. FC = 0.53 n.a. PMID[567745]
NPT20529 NON-MOLECULAR NON-PROTEIN TARGET n.a. FC = 0.76 n.a. PMID[567745]
NPT20529 NON-MOLECULAR NON-PROTEIN TARGET n.a. FC = 0.65 n.a. PMID[567745]
NPT27 Others Unspecified Inhibition = 82.0 % PMID[567745]
NPT27 Others Unspecified Inhibition = 86.0 % PMID[567745]
NPT2 Others Unspecified IC50 = 14500.0 nM PMID[567745]
NPT2 Others Unspecified Inhibition = 90.5 % PMID[567745]
NPT2 Others Unspecified Inhibition = 70.6 % PMID[567745]
NPT2 Others Unspecified Inhibition = 37.9 % PMID[567745]

☑ Note for Activity Records:
☉ The quantitative biological activities were primarily integrated from ChEMBL (Version-30) database and were also directly collected from PubMed literature. PubMed PMID was provided as the reference link for each activity record.

  Chemically structural similarity: I. Similar Active Natural Products in NPASS

Top-200 similar NPs were calculated against the active-NP-set (includes 4,3285 NPs with experimentally-derived bioactivity available in NPASS)

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules. Tc lies between [0, 1] where '1' indicates the highest similarity. What is Tanimoto coefficient

●  The left chart: Distribution of similarity level between NPC27410 and all remaining natural products in the NPASS database.
●  The right table: Most similar natural products (Tc>=0.56 or Top200).

Similarity Score Similarity Level Natural Product ID
1.0 High Similarity NPC166014
0.9737 High Similarity NPC324144
0.9675 High Similarity NPC81218
0.9675 High Similarity NPC306555
0.9675 High Similarity NPC12053
0.9675 High Similarity NPC117188
0.9675 High Similarity NPC205421
0.9675 High Similarity NPC474931
0.9675 High Similarity NPC145832
0.9675 High Similarity NPC158376
0.9673 High Similarity NPC13504
0.9673 High Similarity NPC253043
0.9673 High Similarity NPC306843
0.9673 High Similarity NPC96603
0.9673 High Similarity NPC78222
0.9673 High Similarity NPC136508
0.9673 High Similarity NPC477563
0.9673 High Similarity NPC212794
0.9673 High Similarity NPC196447
0.961 High Similarity NPC476573
0.961 High Similarity NPC81247
0.961 High Similarity NPC35627
0.9608 High Similarity NPC1229
0.953 High Similarity NPC326316
0.953 High Similarity NPC81733
0.9427 High Similarity NPC118274
0.9427 High Similarity NPC168753
0.9423 High Similarity NPC298979
0.9367 High Similarity NPC239775
0.9308 High Similarity NPC66341
0.9308 High Similarity NPC477020
0.9308 High Similarity NPC192135
0.9304 High Similarity NPC69712
0.9304 High Similarity NPC477562
0.9304 High Similarity NPC26240
0.9267 High Similarity NPC103379
0.9267 High Similarity NPC477565
0.9262 High Similarity NPC179825
0.9262 High Similarity NPC191376
0.9262 High Similarity NPC321505
0.9255 High Similarity NPC320223
0.9255 High Similarity NPC114364
0.925 High Similarity NPC229166
0.925 High Similarity NPC128560
0.925 High Similarity NPC199465
0.9221 High Similarity NPC476572
0.9216 High Similarity NPC2413
0.9216 High Similarity NPC278799
0.9216 High Similarity NPC207757
0.9216 High Similarity NPC99659
0.9216 High Similarity NPC110416
0.9216 High Similarity NPC249797
0.9216 High Similarity NPC193949
0.9216 High Similarity NPC325871
0.9216 High Similarity NPC5238
0.9216 High Similarity NPC469817
0.9216 High Similarity NPC184026
0.9216 High Similarity NPC54379
0.9216 High Similarity NPC39701
0.9216 High Similarity NPC172765
0.9216 High Similarity NPC204828
0.9216 High Similarity NPC295691
0.9216 High Similarity NPC127674
0.9216 High Similarity NPC189266
0.9216 High Similarity NPC276588
0.92 High Similarity NPC147390
0.92 High Similarity NPC246587
0.92 High Similarity NPC428
0.92 High Similarity NPC135538
0.92 High Similarity NPC476571
0.92 High Similarity NPC24233
0.9167 High Similarity NPC60186
0.9156 High Similarity NPC126519
0.9156 High Similarity NPC170503
0.9156 High Similarity NPC203784
0.9133 High Similarity NPC476151
0.9128 High Similarity NPC185838
0.9103 High Similarity NPC266753
0.9103 High Similarity NPC306902
0.9103 High Similarity NPC232924
0.9103 High Similarity NPC477559
0.9103 High Similarity NPC160298
0.908 High Similarity NPC474507
0.9079 High Similarity NPC97221
0.9079 High Similarity NPC192768
0.9079 High Similarity NPC220858
0.9079 High Similarity NPC88249
0.9079 High Similarity NPC151895
0.9074 High Similarity NPC148709
0.9074 High Similarity NPC173416
0.9074 High Similarity NPC476577
0.9032 High Similarity NPC186063
0.897 High Similarity NPC116284
0.8961 High Similarity NPC26601
0.8944 High Similarity NPC152212
0.8938 High Similarity NPC210140
0.8931 High Similarity NPC225774
0.8916 High Similarity NPC33902
0.8916 High Similarity NPC276674
0.8916 High Similarity NPC135772
0.8909 High Similarity NPC155442
0.8909 High Similarity NPC476574
0.8909 High Similarity NPC312918
0.8909 High Similarity NPC477561
0.8903 High Similarity NPC2295
0.8903 High Similarity NPC477564
0.8896 High Similarity NPC277669
0.8896 High Similarity NPC76213
0.8875 High Similarity NPC24264
0.8875 High Similarity NPC219341
0.8875 High Similarity NPC476432
0.8859 High Similarity NPC470925
0.8848 High Similarity NPC126284
0.882 High Similarity NPC247389
0.8812 High Similarity NPC302527
0.8812 High Similarity NPC232514
0.8812 High Similarity NPC167546
0.8812 High Similarity NPC238530
0.8812 High Similarity NPC16805
0.8812 High Similarity NPC134858
0.8812 High Similarity NPC276944
0.8792 High Similarity NPC314682
0.878 High Similarity NPC477558
0.8766 High Similarity NPC92541
0.8766 High Similarity NPC219162
0.8766 High Similarity NPC207824
0.8766 High Similarity NPC60538
0.8765 High Similarity NPC241055
0.8758 High Similarity NPC106295
0.8758 High Similarity NPC13916
0.8758 High Similarity NPC304659
0.8758 High Similarity NPC16107
0.8758 High Similarity NPC51957
0.8758 High Similarity NPC210437
0.8758 High Similarity NPC264850
0.8758 High Similarity NPC476144
0.8758 High Similarity NPC86144
0.875 High Similarity NPC233650
0.8743 High Similarity NPC248642
0.8733 High Similarity NPC213206
0.8733 High Similarity NPC188163
0.8733 High Similarity NPC474915
0.8733 High Similarity NPC328750
0.8718 High Similarity NPC470924
0.8713 High Similarity NPC478093
0.8706 High Similarity NPC82763
0.8704 High Similarity NPC210918
0.8701 High Similarity NPC7467
0.8698 High Similarity NPC320088
0.8696 High Similarity NPC24465
0.8696 High Similarity NPC168409
0.869 High Similarity NPC156576
0.8679 High Similarity NPC111485
0.8663 High Similarity NPC478091
0.8663 High Similarity NPC473589
0.8663 High Similarity NPC478092
0.8663 High Similarity NPC30182
0.8647 High Similarity NPC476576
0.8647 High Similarity NPC186546
0.8642 High Similarity NPC256012
0.8642 High Similarity NPC42549
0.8642 High Similarity NPC268503
0.8642 High Similarity NPC317272
0.8642 High Similarity NPC124657
0.8642 High Similarity NPC250846
0.8642 High Similarity NPC240841
0.8636 High Similarity NPC144863
0.8636 High Similarity NPC90844
0.8636 High Similarity NPC95075
0.8636 High Similarity NPC253883
0.8634 High Similarity NPC189470
0.8623 High Similarity NPC32154
0.8618 High Similarity NPC136860
0.8618 High Similarity NPC128019
0.8618 High Similarity NPC476567
0.8608 High Similarity NPC244112
0.8599 High Similarity NPC82285
0.8599 High Similarity NPC133011
0.8591 High Similarity NPC131204
0.8591 High Similarity NPC301050
0.8589 High Similarity NPC150879
0.8589 High Similarity NPC204947
0.8581 High Similarity NPC130941
0.858 High Similarity NPC255607
0.858 High Similarity NPC3375
0.8562 High Similarity NPC221864
0.8553 High Similarity NPC147091
0.8545 High Similarity NPC19520
0.8545 High Similarity NPC149090
0.8538 High Similarity NPC474904
0.8537 High Similarity NPC83198
0.8537 High Similarity NPC470324
0.8537 High Similarity NPC204908
0.8509 High Similarity NPC271388
0.8509 High Similarity NPC205167
0.8509 High Similarity NPC235143
0.8509 High Similarity NPC205255
0.8509 High Similarity NPC119649
0.8509 High Similarity NPC230956
0.8509 High Similarity NPC249274

  Chemically structural similarity: II. Similar Clinical/Approved Drugs

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules.

●  The left chart: Distribution of similarity level between NPC27410 and all drugs/candidates.
●  The right table: Most similar clinical/approved drugs (Tc>=0.56 or Top200).

Similarity Score Similarity Level Drug ID Developmental Stage
0.9195 High Similarity NPD2420 Approved
0.9195 High Similarity NPD2421 Approved
0.8758 High Similarity NPD4584 Approved
0.8733 High Similarity NPD4664 Clinical (unspecified phase)
0.865 High Similarity NPD2489 Approved
0.865 High Similarity NPD27 Approved
0.8537 High Similarity NPD2898 Approved
0.8528 High Similarity NPD3051 Approved
0.8476 Intermediate Similarity NPD2970 Approved
0.8476 Intermediate Similarity NPD2969 Approved
0.8442 Intermediate Similarity NPD5241 Discontinued
0.8405 Intermediate Similarity NPD7201 Clinical (unspecified phase)
0.8387 Intermediate Similarity NPD3845 Phase 1
0.8387 Intermediate Similarity NPD2422 Clinical (unspecified phase)
0.8304 Intermediate Similarity NPD8054 Approved
0.8304 Intermediate Similarity NPD8053 Approved
0.8303 Intermediate Similarity NPD4010 Discontinued
0.8282 Intermediate Similarity NPD7832 Clinical (unspecified phase)
0.8282 Intermediate Similarity NPD7831 Phase 2
0.8282 Intermediate Similarity NPD7833 Phase 2
0.8266 Intermediate Similarity NPD7906 Approved
0.8246 Intermediate Similarity NPD4578 Approved
0.8246 Intermediate Similarity NPD4577 Approved
0.8187 Intermediate Similarity NPD4017 Approved
0.8165 Intermediate Similarity NPD1754 Clinical (unspecified phase)
0.814 Intermediate Similarity NPD3534 Clinical (unspecified phase)
0.814 Intermediate Similarity NPD7311 Approved
0.814 Intermediate Similarity NPD7313 Approved
0.814 Intermediate Similarity NPD7310 Approved
0.814 Intermediate Similarity NPD7312 Approved
0.8103 Intermediate Similarity NPD4663 Approved
0.8098 Intermediate Similarity NPD6818 Clinical (unspecified phase)
0.8092 Intermediate Similarity NPD7309 Approved
0.8086 Intermediate Similarity NPD4772 Phase 2
0.8086 Intermediate Similarity NPD4773 Phase 2
0.8068 Intermediate Similarity NPD2490 Approved
0.8068 Intermediate Similarity NPD2488 Approved
0.8037 Intermediate Similarity NPD7298 Approved
0.8026 Intermediate Similarity NPD3109 Approved
0.8026 Intermediate Similarity NPD3110 Approved
0.795 Intermediate Similarity NPD3639 Approved
0.795 Intermediate Similarity NPD3640 Phase 3
0.795 Intermediate Similarity NPD3641 Approved
0.7935 Intermediate Similarity NPD6029 Clinical (unspecified phase)
0.7935 Intermediate Similarity NPD6028 Clinical (unspecified phase)
0.7895 Intermediate Similarity NPD8252 Approved
0.7895 Intermediate Similarity NPD8099 Discontinued
0.7895 Intermediate Similarity NPD8251 Approved
0.7892 Intermediate Similarity NPD4581 Clinical (unspecified phase)
0.7892 Intermediate Similarity NPD6788 Approved
0.7882 Intermediate Similarity NPD4481 Phase 3
0.7849 Intermediate Similarity NPD8156 Discontinued
0.784 Intermediate Similarity NPD6030 Approved
0.784 Intermediate Similarity NPD6031 Approved
0.7829 Intermediate Similarity NPD5155 Approved
0.7829 Intermediate Similarity NPD5156 Approved
0.7778 Intermediate Similarity NPD5718 Phase 2
0.7771 Intermediate Similarity NPD1632 Clinical (unspecified phase)
0.7765 Intermediate Similarity NPD6071 Discontinued
0.7763 Intermediate Similarity NPD2605 Approved
0.7763 Intermediate Similarity NPD3594 Approved
0.7763 Intermediate Similarity NPD3595 Approved
0.7763 Intermediate Similarity NPD2606 Approved
0.775 Intermediate Similarity NPD5084 Clinical (unspecified phase)
0.7736 Intermediate Similarity NPD5177 Phase 3
0.7733 Intermediate Similarity NPD5602 Clinical (unspecified phase)
0.7727 Intermediate Similarity NPD2674 Phase 3
0.7725 Intermediate Similarity NPD2563 Approved
0.7725 Intermediate Similarity NPD2560 Approved
0.7712 Intermediate Similarity NPD2669 Clinical (unspecified phase)
0.7707 Intermediate Similarity NPD1753 Discontinued
0.7697 Intermediate Similarity NPD3637 Approved
0.7697 Intermediate Similarity NPD3635 Approved
0.7697 Intermediate Similarity NPD3636 Approved
0.7676 Intermediate Similarity NPD3452 Approved
0.7676 Intermediate Similarity NPD2493 Approved
0.7676 Intermediate Similarity NPD3450 Approved
0.7676 Intermediate Similarity NPD2494 Approved
0.767 Intermediate Similarity NPD8453 Clinical (unspecified phase)
0.7627 Intermediate Similarity NPD2968 Approved
0.7627 Intermediate Similarity NPD2971 Approved
0.7613 Intermediate Similarity NPD4475 Approved
0.7613 Intermediate Similarity NPD4474 Approved
0.7602 Intermediate Similarity NPD7802 Discontinued
0.7561 Intermediate Similarity NPD6090 Discontinued
0.7557 Intermediate Similarity NPD6297 Approved
0.7553 Intermediate Similarity NPD4583 Approved
0.7553 Intermediate Similarity NPD4582 Approved
0.7548 Intermediate Similarity NPD3145 Approved
0.7548 Intermediate Similarity NPD3144 Approved
0.7546 Intermediate Similarity NPD3124 Discontinued
0.7532 Intermediate Similarity NPD5752 Clinical (unspecified phase)
0.75 Intermediate Similarity NPD4002 Approved
0.75 Intermediate Similarity NPD4726 Approved
0.75 Intermediate Similarity NPD7667 Clinical (unspecified phase)
0.75 Intermediate Similarity NPD4004 Approved
0.75 Intermediate Similarity NPD4721 Approved
0.75 Intermediate Similarity NPD4725 Approved
0.7485 Intermediate Similarity NPD6783 Clinical (unspecified phase)
0.7469 Intermediate Similarity NPD5754 Discontinued
0.746 Intermediate Similarity NPD4040 Phase 1
0.7459 Intermediate Similarity NPD2974 Approved
0.7459 Intermediate Similarity NPD2973 Approved
0.7459 Intermediate Similarity NPD2975 Approved
0.7453 Intermediate Similarity NPD4257 Approved
0.7453 Intermediate Similarity NPD4256 Phase 2
0.7439 Intermediate Similarity NPD7598 Phase 2
0.743 Intermediate Similarity NPD5917 Clinical (unspecified phase)
0.7427 Intermediate Similarity NPD4055 Discovery
0.7425 Intermediate Similarity NPD7261 Clinical (unspecified phase)
0.7423 Intermediate Similarity NPD5160 Discontinued
0.7421 Intermediate Similarity NPD6895 Approved
0.7421 Intermediate Similarity NPD7718 Clinical (unspecified phase)
0.7421 Intermediate Similarity NPD6896 Approved
0.7407 Intermediate Similarity NPD3060 Approved
0.7401 Intermediate Similarity NPD7479 Phase 2
0.7399 Intermediate Similarity NPD6107 Approved
0.7389 Intermediate Similarity NPD6851 Approved
0.7389 Intermediate Similarity NPD6853 Approved
0.7383 Intermediate Similarity NPD2226 Clinical (unspecified phase)
0.7362 Intermediate Similarity NPD6748 Discontinued
0.7358 Intermediate Similarity NPD4579 Clinical (unspecified phase)
0.7356 Intermediate Similarity NPD4166 Phase 2
0.7354 Intermediate Similarity NPD3448 Approved
0.7354 Intermediate Similarity NPD2491 Approved
0.7353 Intermediate Similarity NPD2978 Approved
0.7353 Intermediate Similarity NPD2977 Approved
0.7349 Intermediate Similarity NPD3647 Clinical (unspecified phase)
0.7347 Intermediate Similarity NPD7047 Phase 3
0.7346 Intermediate Similarity NPD7037 Approved
0.7345 Intermediate Similarity NPD42 Phase 2
0.7345 Intermediate Similarity NPD6042 Phase 2
0.7345 Intermediate Similarity NPD4873 Discontinued
0.734 Intermediate Similarity NPD4580 Approved
0.7338 Intermediate Similarity NPD3055 Approved
0.7338 Intermediate Similarity NPD3053 Approved
0.7333 Intermediate Similarity NPD4093 Discontinued
0.7325 Intermediate Similarity NPD6812 Clinical (unspecified phase)
0.732 Intermediate Similarity NPD1669 Approved
0.7317 Intermediate Similarity NPD3692 Discontinued
0.731 Intermediate Similarity NPD5978 Approved
0.731 Intermediate Similarity NPD5977 Approved
0.7305 Intermediate Similarity NPD4727 Phase 1
0.7305 Intermediate Similarity NPD1914 Approved
0.73 Intermediate Similarity NPD6997 Phase 2
0.7289 Intermediate Similarity NPD1424 Approved
0.7284 Intermediate Similarity NPD2029 Clinical (unspecified phase)
0.7283 Intermediate Similarity NPD6656 Clinical (unspecified phase)
0.7283 Intermediate Similarity NPD7400 Phase 3
0.7267 Intermediate Similarity NPD5303 Approved
0.7267 Intermediate Similarity NPD5304 Approved
0.7263 Intermediate Similarity NPD3057 Approved
0.7257 Intermediate Similarity NPD6747 Phase 1
0.7256 Intermediate Similarity NPD6331 Phase 2
0.7255 Intermediate Similarity NPD2233 Approved
0.7255 Intermediate Similarity NPD2230 Approved
0.7255 Intermediate Similarity NPD2232 Approved
0.7241 Intermediate Similarity NPD4666 Phase 3
0.7219 Intermediate Similarity NPD824 Approved
0.7216 Intermediate Similarity NPD6687 Approved
0.7216 Intermediate Similarity NPD6688 Approved
0.7215 Intermediate Similarity NPD2028 Clinical (unspecified phase)
0.7212 Intermediate Similarity NPD5307 Clinical (unspecified phase)
0.7204 Intermediate Similarity NPD7262 Phase 1
0.7202 Intermediate Similarity NPD7427 Discontinued
0.7195 Intermediate Similarity NPD4162 Approved
0.7186 Intermediate Similarity NPD4160 Clinical (unspecified phase)
0.7184 Intermediate Similarity NPD5709 Phase 3
0.7178 Intermediate Similarity NPD7030 Discontinued
0.7174 Intermediate Similarity NPD7291 Discontinued
0.7173 Intermediate Similarity NPD2972 Approved
0.7173 Intermediate Similarity NPD3533 Approved
0.7171 Intermediate Similarity NPD2668 Approved
0.7171 Intermediate Similarity NPD2667 Approved
0.7169 Intermediate Similarity NPD6667 Approved
0.7169 Intermediate Similarity NPD6666 Approved
0.7161 Intermediate Similarity NPD7258 Clinical (unspecified phase)
0.7158 Intermediate Similarity NPD5087 Clinical (unspecified phase)
0.7152 Intermediate Similarity NPD3977 Clinical (unspecified phase)
0.7151 Intermediate Similarity NPD5313 Approved
0.7151 Intermediate Similarity NPD5312 Approved
0.7143 Intermediate Similarity NPD6037 Discontinued
0.7135 Intermediate Similarity NPD5938 Phase 3
0.7135 Intermediate Similarity NPD7110 Phase 1
0.7135 Intermediate Similarity NPD7109 Clinical (unspecified phase)
0.7134 Intermediate Similarity NPD7045 Clinical (unspecified phase)
0.7125 Intermediate Similarity NPD2238 Phase 2
0.7125 Intermediate Similarity NPD3619 Clinical (unspecified phase)
0.7125 Intermediate Similarity NPD3620 Phase 2
0.7118 Intermediate Similarity NPD4005 Discontinued
0.7118 Intermediate Similarity NPD6523 Clinical (unspecified phase)
0.7105 Intermediate Similarity NPD8095 Phase 1
0.7101 Intermediate Similarity NPD5976 Discontinued
0.7093 Intermediate Similarity NPD7945 Clinical (unspecified phase)
0.7091 Intermediate Similarity NPD4236 Phase 3
0.7091 Intermediate Similarity NPD4237 Approved
0.7083 Intermediate Similarity NPD7019 Approved
0.7083 Intermediate Similarity NPD7020 Approved
0.7083 Intermediate Similarity NPD4123 Phase 3
0.7079 Intermediate Similarity NPD6607 Clinical (unspecified phase)

  Bioactivity similarity: Similar Natural Products in NPASS

Bioactivity similarity was calculated based on bioactivity descriptors of compounds. The bioactivity descriptors were calculated by a recently developed AI algorithm Chemical Checker (CC) [Nature Biotechnology, 38:1087–1096, 2020; Nature Communications, 12:3932, 2021], which evaluated bioactivity similarities at five levels:
A: chemistry similarity;
B: biological targets similarity;
C: networks similarity;
D: cell-based bioactivity similarity;
E: similarity based on clinical data.

Those 5 categories of CC bioactivity descriptors were calculated and then subjected to manifold projection using UMAP algorithm, to project all NPs on a 2-Dimensional space. The current NP was highlighted with a small circle in the 2-D map. Below figures: left-to-right, A-to-E.

A: chemistry similarity
B: biological targets similarity
C: networks similarity
D: cell-based bioactivity similarity
E: similarity based on clinical data