Structure

Physi-Chem Properties

Molecular Weight:  327.15
Volume:  333.293
LogP:  2.083
LogD:  2.757
LogS:  -1.642
# Rotatable Bonds:  2
TPSA:  62.16
# H-Bond Aceptor:  5
# H-Bond Donor:  2
# Rings:  4
# Heavy Atoms:  5

MedChem Properties

QED Drug-Likeness Score:  0.888
Synthetic Accessibility Score:  3.182
Fsp3:  0.368
Lipinski Rule-of-5:  Accepted
Pfizer Rule:  Accepted
GSK Rule:  Accepted
BMS Rule:  0
Golden Triangle Rule:  Accepted
Chelating Alert:  1
PAINS Alert:  0

ADMET Properties (ADMETlab2.0)

ADMET: Absorption

Caco-2 Permeability:  -4.821
MDCK Permeability:  1.1577921213756781e-05
Pgp-inhibitor:  0.013
Pgp-substrate:  0.369
Human Intestinal Absorption (HIA):  0.008
20% Bioavailability (F20%):  0.033
30% Bioavailability (F30%):  0.061

ADMET: Distribution

Blood-Brain-Barrier Penetration (BBB):  0.95
Plasma Protein Binding (PPB):  86.89720916748047%
Volume Distribution (VD):  1.591
Pgp-substrate:  12.85200309753418%

ADMET: Metabolism

CYP1A2-inhibitor:  0.572
CYP1A2-substrate:  0.957
CYP2C19-inhibitor:  0.028
CYP2C19-substrate:  0.79
CYP2C9-inhibitor:  0.012
CYP2C9-substrate:  0.672
CYP2D6-inhibitor:  0.236
CYP2D6-substrate:  0.913
CYP3A4-inhibitor:  0.051
CYP3A4-substrate:  0.903

ADMET: Excretion

Clearance (CL):  12.205
Half-life (T1/2):  0.74

ADMET: Toxicity

hERG Blockers:  0.65
Human Hepatotoxicity (H-HT):  0.11
Drug-inuced Liver Injury (DILI):  0.34
AMES Toxicity:  0.433
Rat Oral Acute Toxicity:  0.382
Maximum Recommended Daily Dose:  0.919
Skin Sensitization:  0.637
Carcinogencity:  0.035
Eye Corrosion:  0.003
Eye Irritation:  0.01
Respiratory Toxicity:  0.851

Download Data

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General Info & Identifiers & Properties  
Structure MOL file  
Source Organisms  
Biological Activities  
Similar NPs/Drugs  

  Natural Product: NPC13504

Natural Product ID:  NPC13504
Common Name*:   1,10-Dimethoxy-6-Methyl-5,6,6A,7-Tetrahydro-4H-Dibenzo[De,G]Quinoline-2,9-Diol
IUPAC Name:   1,10-dimethoxy-6-methyl-5,6,6a,7-tetrahydro-4H-dibenzo[de,g]quinoline-2,9-diol
Synonyms:  
Standard InCHIKey:  LZJRNLRASBVRRX-UHFFFAOYSA-N
Standard InCHI:  InChI=1S/C19H21NO4/c1-20-5-4-10-7-15(22)19(24-3)18-12-9-16(23-2)14(21)8-11(12)6-13(20)17(10)18/h7-9,13,21-22H,4-6H2,1-3H3
SMILES:  CN1CCc2cc(c(c3-c4cc(c(cc4CC1c23)O)OC)OC)O
Synthetic Gene Cluster:   n.a.
ChEMBL Identifier:   CHEMBL1321247
PubChem CID:   248507
Chemical Classification**:  
  • CHEMONTID:0000000 [Organic compounds]
    • [CHEMONTID:0000279] Alkaloids and derivatives
      • [CHEMONTID:0000381] Aporphines

*Note: the InCHIKey will be temporarily assigned as the "Common Name" if no IUPAC name or alternative short name is available.
**Note: the Chemical Classification was calculated by NPClassifier Version 1.5. Reference: PMID:34662515.

  Species Source

Organism ID Organism Name Taxonomy Level Family SuperKingdom Isolation Part Collection Location Collection Time Reference
NPO4682 Lindera aggregata Species Lauraceae Eukaryota n.a. leaf n.a. PMID[17999353]
NPO4682 Lindera aggregata Species Lauraceae Eukaryota Roots; Tubers n.a. n.a. PMID[19639966]
NPO4682 Lindera aggregata Species Lauraceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO30415 Lindera aggregate Species Tineidae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO4682 Lindera aggregata Species Lauraceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO13346 Lindera strichnifolia Species Tineidae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO4682 Lindera aggregata Species Lauraceae Eukaryota n.a. n.a. n.a. Database[UNPD]

☑ Note for Reference:
In addition to directly collecting NP source organism data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated them from below databases:
UNPD: Universal Natural Products Database [PMID: 23638153].
StreptomeDB: a database of streptomycetes natural products [PMID: 33051671].
TM-MC: a database of medicinal materials and chemical compounds in Northeast Asian traditional medicine [PMID: 26156871].
TCM@Taiwan: a Traditional Chinese Medicine database [PMID: 21253603].
TCMID: a Traditional Chinese Medicine database [PMID: 29106634].
TCMSP: The traditional Chinese medicine systems pharmacology database and analysis platform [PMID: 24735618].
HerDing: a herb recommendation system to treat diseases using genes and chemicals [PMID: 26980517].
MetaboLights: a metabolomics database [PMID: 27010336].
FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].

  NP Quantity Composition/Concentration

Organism ID NP ID Organism Material Preparation Organism Part NP Quantity (Standard) NP Quantity (Minimum) NP Quantity (Maximum) Quantity Unit Reference

☑ Note for Reference:
In addition to directly collecting NP quantitative data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated NP quantitative records for specific NP domains (e.g., NPS from foods or herbs) from domain-specific databases. These databases include:
DUKE: Dr. Duke's Phytochemical and Ethnobotanical Databases.
PHENOL EXPLORER: is the first comprehensive database on polyphenol content in foods [PMID: 24103452], its homepage can be accessed at here.
FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].

  Biological Activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference
NPT149 Individual Protein Endoplasmic reticulum-associated amyloid beta-peptide-binding protein Homo sapiens Potency = 31622.8 nM PMID[478305]
NPT48 Individual Protein Lysine-specific demethylase 4D-like Homo sapiens Potency = 28183.8 nM PMID[478305]
NPT48 Individual Protein Lysine-specific demethylase 4D-like Homo sapiens Potency = 31622.8 nM PMID[478306]
NPT149 Individual Protein Endoplasmic reticulum-associated amyloid beta-peptide-binding protein Homo sapiens Potency = 31622.8 nM PMID[478307]
NPT48 Individual Protein Lysine-specific demethylase 4D-like Homo sapiens Potency = 31622.8 nM PMID[478308]
NPT48 Individual Protein Lysine-specific demethylase 4D-like Homo sapiens Potency = 22387.2 nM PMID[478307]
NPT51 Individual Protein Microtubule-associated protein tau Homo sapiens Potency = 35481.3 nM PMID[478306]
NPT51 Individual Protein Microtubule-associated protein tau Homo sapiens Potency = 707.9 nM PMID[478308]
NPT51 Individual Protein Microtubule-associated protein tau Homo sapiens Potency = 11220.2 nM PMID[478305]
NPT55 Individual Protein Putative fructose-1,6-bisphosphate aldolase Giardia intestinalis Potency = 15811.4 nM PMID[478306]
NPT55 Individual Protein Putative fructose-1,6-bisphosphate aldolase Giardia intestinalis Potency = 15811.4 nM PMID[478305]
NPT55 Individual Protein Putative fructose-1,6-bisphosphate aldolase Giardia intestinalis Potency = 6294.6 nM PMID[478308]
NPT151 Individual Protein 15-hydroxyprostaglandin dehydrogenase [NAD+] Homo sapiens Potency = 28183.8 nM PMID[478305]
NPT531 Individual Protein Nuclear receptor ROR-gamma Mus musculus Potency = 28183.8 nM PMID[478305]
NPT151 Individual Protein 15-hydroxyprostaglandin dehydrogenase [NAD+] Homo sapiens Potency = 31622.8 nM PMID[478307]
NPT60 Individual Protein Lysosomal alpha-glucosidase Homo sapiens Potency = 35481.3 nM PMID[478308]
NPT109 Individual Protein Cytochrome P450 3A4 Homo sapiens Potency = 25118.9 nM PMID[478305]
NPT109 Individual Protein Cytochrome P450 3A4 Homo sapiens Potency = 25118.9 nM PMID[478307]
NPT443 Individual Protein Histone acetyltransferase GCN5 Homo sapiens Potency n.a. 794.3 nM PMID[478306]
NPT63 Individual Protein Bromodomain adjacent to zinc finger domain protein 2B Homo sapiens Potency n.a. 79432.8 nM PMID[478306]
NPT64 Individual Protein ATPase family AAA domain-containing protein 5 Homo sapiens Potency n.a. 5802.4 nM PMID[478308]
NPT199 Individual Protein DNA polymerase kappa Homo sapiens Potency n.a. 17782.8 nM PMID[478309]
NPT368 Cell Line SN12C Homo sapiens GI50 n.a. 100000.0 nM PMID[478310]
NPT367 Cell Line MDA-N Homo sapiens GI50 n.a. 100000.0 nM PMID[478310]
NPT369 Cell Line ACHN Homo sapiens GI50 n.a. 100000.0 nM PMID[478310]
NPT370 Cell Line NCI-H23 Homo sapiens GI50 n.a. 100000.0 nM PMID[478310]
NPT371 Cell Line UO-31 Homo sapiens GI50 n.a. 100000.0 nM PMID[478310]
NPT372 Cell Line HOP-92 Homo sapiens GI50 n.a. 78342.96 nM PMID[478310]
NPT116 Cell Line HL-60 Homo sapiens GI50 n.a. 91411.32 nM PMID[478310]
NPT90 Cell Line DU-145 Homo sapiens GI50 n.a. 100000.0 nM PMID[478310]
NPT374 Cell Line SF-539 Homo sapiens GI50 n.a. 39902.49 nM PMID[478310]
NPT373 Cell Line SK-MEL-5 Homo sapiens GI50 n.a. 89742.88 nM PMID[478310]
NPT375 Cell Line Malme-3M Homo sapiens GI50 n.a. 100000.0 nM PMID[478310]
NPT111 Cell Line K562 Homo sapiens GI50 n.a. 100000.0 nM PMID[478310]
NPT376 Cell Line A498 Homo sapiens GI50 n.a. 100000.0 nM PMID[478310]
NPT377 Cell Line OVCAR-3 Homo sapiens GI50 n.a. 98855.31 nM PMID[478310]
NPT112 Cell Line MOLT-4 Homo sapiens GI50 n.a. 58344.51 nM PMID[478310]
NPT379 Cell Line HOP-62 Homo sapiens GI50 n.a. 100000.0 nM PMID[478310]
NPT378 Cell Line NCI/ADR-RES Homo sapiens GI50 n.a. 100000.0 nM PMID[478310]
NPT381 Cell Line OVCAR-8 Homo sapiens GI50 n.a. 100000.0 nM PMID[478310]
NPT380 Cell Line U-251 Homo sapiens GI50 n.a. 86099.38 nM PMID[478310]
NPT382 Cell Line OVCAR-5 Homo sapiens GI50 n.a. 100000.0 nM PMID[478310]
NPT383 Cell Line SNB-19 Homo sapiens GI50 n.a. 100000.0 nM PMID[478310]
NPT82 Cell Line MDA-MB-231 Homo sapiens GI50 n.a. 100000.0 nM PMID[478310]
NPT385 Cell Line SR Homo sapiens GI50 n.a. 59703.53 nM PMID[478310]
NPT384 Cell Line TK-10 Homo sapiens GI50 n.a. 100000.0 nM PMID[478310]
NPT323 Cell Line SW-620 Homo sapiens GI50 n.a. 100000.0 nM PMID[478310]
NPT386 Cell Line KM12 Homo sapiens GI50 n.a. 100000.0 nM PMID[478310]
NPT455 Cell Line NCI-H522 Homo sapiens GI50 n.a. 56363.77 nM PMID[478310]
NPT387 Cell Line M14 Homo sapiens GI50 n.a. 100000.0 nM PMID[478310]
NPT388 Cell Line NCI-H322M Homo sapiens GI50 n.a. 100000.0 nM PMID[478310]
NPT389 Cell Line RPMI-8226 Homo sapiens GI50 n.a. 100000.0 nM PMID[478310]
NPT456 Cell Line OVCAR-4 Homo sapiens GI50 n.a. 100000.0 nM PMID[478310]
NPT390 Cell Line LOX IMVI Homo sapiens GI50 n.a. 100000.0 nM PMID[478310]
NPT457 Cell Line BT-549 Homo sapiens GI50 n.a. 100000.0 nM PMID[478310]
NPT147 Cell Line SK-MEL-2 Homo sapiens GI50 n.a. 100000.0 nM PMID[478310]
NPT391 Cell Line HCC 2998 Homo sapiens GI50 n.a. 100000.0 nM PMID[478310]
NPT81 Cell Line A549 Homo sapiens GI50 n.a. 100000.0 nM PMID[478310]
NPT392 Cell Line SNB-75 Homo sapiens GI50 n.a. 81096.11 nM PMID[478310]
NPT393 Cell Line HCT-116 Homo sapiens GI50 n.a. 77983.01 nM PMID[478310]
NPT148 Cell Line HCT-15 Homo sapiens GI50 n.a. 100000.0 nM PMID[478310]
NPT395 Cell Line SF-268 Homo sapiens GI50 n.a. 100000.0 nM PMID[478310]
NPT394 Cell Line EKVX Homo sapiens GI50 n.a. 100000.0 nM PMID[478310]
NPT306 Cell Line PC-3 Homo sapiens GI50 n.a. 96605.09 nM PMID[478310]
NPT83 Cell Line MCF7 Homo sapiens GI50 n.a. 100000.0 nM PMID[478310]
NPT146 Cell Line SK-OV-3 Homo sapiens GI50 n.a. 100000.0 nM PMID[478310]
NPT396 Cell Line T47D Homo sapiens GI50 n.a. 100000.0 nM PMID[478310]
NPT397 Cell Line NCI-H460 Homo sapiens GI50 n.a. 100000.0 nM PMID[478310]
NPT398 Cell Line UACC-62 Homo sapiens GI50 n.a. 100000.0 nM PMID[478310]
NPT308 Cell Line CAKI-1 Homo sapiens GI50 n.a. 100000.0 nM PMID[478310]
NPT400 Cell Line MDA-MB-435 Homo sapiens GI50 n.a. 100000.0 nM PMID[478310]
NPT399 Cell Line SF-295 Homo sapiens GI50 n.a. 100000.0 nM PMID[478310]
NPT458 Cell Line IGROV-1 Homo sapiens GI50 n.a. 100000.0 nM PMID[478310]
NPT402 Cell Line Hs-578T Homo sapiens GI50 n.a. 100000.0 nM PMID[478310]
NPT401 Cell Line 786-0 Homo sapiens GI50 n.a. 100000.0 nM PMID[478310]
NPT403 Cell Line UACC-257 Homo sapiens GI50 n.a. 100000.0 nM PMID[478310]
NPT404 Cell Line CCRF-CEM Homo sapiens GI50 n.a. 100000.0 nM PMID[478310]
NPT139 Cell Line HT-29 Homo sapiens GI50 n.a. 62230.03 nM PMID[478310]
NPT405 Cell Line NCI-H226 Homo sapiens GI50 n.a. 69662.65 nM PMID[478310]
NPT170 Cell Line SK-MEL-28 Homo sapiens GI50 n.a. 100000.0 nM PMID[478310]
NPT406 Cell Line RXF 393 Homo sapiens GI50 n.a. 100000.0 nM PMID[478310]
NPT407 Cell Line COLO 205 Homo sapiens GI50 n.a. 73451.39 nM PMID[478310]
NPT1251 Individual Protein Mitochondrial peptide methionine sulfoxide reductase Bos taurus IC50 n.a. 53925.0 nM PMID[478306]
NPT101 Individual Protein Glucagon-like peptide 1 receptor Homo sapiens Potency n.a. 12589.3 nM PMID[478306]
NPT105 Individual Protein Muscleblind-like protein 1 Homo sapiens Potency n.a. 15848.9 nM PMID[478308]
NPT105 Individual Protein Muscleblind-like protein 1 Homo sapiens Potency n.a. 19952.6 nM PMID[478306]
NPT49 Individual Protein DNA-(apurinic or apyrimidinic site) lyase Homo sapiens Potency n.a. 44668.4 nM PMID[478307]
NPT791 Individual Protein Cruzipain Trypanosoma cruzi Potency = 31622.8 nM PMID[478307]
NPT94 Individual Protein Aldehyde dehydrogenase 1A1 Homo sapiens Potency = 28183.8 nM PMID[478305]
NPT94 Individual Protein Aldehyde dehydrogenase 1A1 Homo sapiens Potency = 28183.8 nM PMID[478308]
NPT94 Individual Protein Aldehyde dehydrogenase 1A1 Homo sapiens Potency = 31622.8 nM PMID[478307]
NPT197 Protein-Protein Interaction Menin/Histone-lysine N-methyltransferase MLL Homo sapiens Potency = 11220.2 nM PMID[478308]
NPT197 Protein-Protein Interaction Menin/Histone-lysine N-methyltransferase MLL Homo sapiens Potency = 31622.8 nM PMID[478305]
NPT2 Others Unspecified Potency = 15848.9 nM PMID[478307]
NPT533 Protein-Protein Interaction Runt-related transcription factor 1/Core-binding factor subunit beta Homo sapiens Potency n.a. 25118.9 nM PMID[478306]
NPT533 Protein-Protein Interaction Runt-related transcription factor 1/Core-binding factor subunit beta Homo sapiens Potency n.a. 28183.8 nM PMID[478308]
NPT6 Organism Plasmodium falciparum Plasmodium falciparum Potency n.a. 13115.4 nM PMID[478308]
NPT8 Individual Protein DNA polymerase iota Homo sapiens Potency n.a. 5011.9 nM PMID[478306]
NPT803 Individual Protein Flap endonuclease 1 Homo sapiens Potency n.a. 25118.9 nM PMID[478306]
NPT9 Individual Protein DNA polymerase eta Homo sapiens Potency n.a. 28183.8 nM PMID[478306]
NPT84 Individual Protein Dual specificity tyrosine-phosphorylation-regulated kinase 1A Rattus norvegicus AC50 = 3826.0 nM PMID[478306]
NPT6 Organism Plasmodium falciparum Plasmodium falciparum Potency n.a. 16511.3 nM PMID[478308]
NPT7 Individual Protein Thioredoxin reductase 1, cytoplasmic Rattus norvegicus Potency n.a. 28183.8 nM PMID[478306]
NPT755 Individual Protein Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 Homo sapiens Potency n.a. 56234.1 nM PMID[478306]
NPT173 Organism Klebsiella pneumoniae Klebsiella pneumoniae Inhibition = 7.6 % PMID[478311]
NPT18 Organism Pseudomonas aeruginosa Pseudomonas aeruginosa Inhibition = 17.23 % PMID[478311]
NPT20 Organism Candida albicans Candida albicans Inhibition = -2.23 % PMID[478311]
NPT85 Organism Filobasidiella neoformans Cryptococcus neoformans Inhibition = -8.59 % PMID[478311]
NPT2922 Organism Staphylococcus aureus subsp. aureus Staphylococcus aureus subsp. aureus Inhibition = 8.78 % PMID[478311]
NPT747 Organism Acinetobacter baumannii Acinetobacter baumannii Inhibition = -19.02 % PMID[478311]
NPT19 Organism Escherichia coli Escherichia coli Inhibition = 10.6 % PMID[478311]
NPT20555 ORGANISM SARS-CoV-2 Severe acute respiratory syndrome coronavirus 2 IC50 > 20000.0 nM PMID[478312]
NPT20555 ORGANISM SARS-CoV-2 Severe acute respiratory syndrome coronavirus 2 IC50 > 19952.62 nM PMID[478312]

☑ Note for Activity Records:
☉ The quantitative biological activities were primarily integrated from ChEMBL (Version-30) database and were also directly collected from PubMed literature. PubMed PMID was provided as the reference link for each activity record.

  Chemically structural similarity: I. Similar Active Natural Products in NPASS

Top-200 similar NPs were calculated against the active-NP-set (includes 4,3285 NPs with experimentally-derived bioactivity available in NPASS)

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules. Tc lies between [0, 1] where '1' indicates the highest similarity. What is Tanimoto coefficient

●  The left chart: Distribution of similarity level between NPC13504 and all remaining natural products in the NPASS database.
●  The right table: Most similar natural products (Tc>=0.56 or Top200).

Similarity Score Similarity Level Natural Product ID
1.0 High Similarity NPC477563
1.0 High Similarity NPC306843
1.0 High Similarity NPC253043
1.0 High Similarity NPC212794
1.0 High Similarity NPC96603
1.0 High Similarity NPC196447
1.0 High Similarity NPC136508
1.0 High Similarity NPC78222
0.9934 High Similarity NPC324144
0.987 High Similarity NPC306555
0.987 High Similarity NPC12053
0.987 High Similarity NPC81218
0.987 High Similarity NPC474931
0.987 High Similarity NPC158376
0.987 High Similarity NPC145832
0.987 High Similarity NPC117188
0.987 High Similarity NPC205421
0.9682 High Similarity NPC239775
0.9675 High Similarity NPC1229
0.9673 High Similarity NPC27410
0.9673 High Similarity NPC166014
0.9618 High Similarity NPC26240
0.9618 High Similarity NPC69712
0.9618 High Similarity NPC477562
0.956 High Similarity NPC229166
0.956 High Similarity NPC128560
0.956 High Similarity NPC199465
0.9539 High Similarity NPC325871
0.9539 High Similarity NPC99659
0.9497 High Similarity NPC477020
0.9497 High Similarity NPC192135
0.9497 High Similarity NPC66341
0.9494 High Similarity NPC168753
0.9494 High Similarity NPC118274
0.9441 High Similarity NPC114364
0.9441 High Similarity NPC320223
0.9416 High Similarity NPC476572
0.9359 High Similarity NPC60186
0.9304 High Similarity NPC81247
0.9304 High Similarity NPC35627
0.9304 High Similarity NPC476573
0.9268 High Similarity NPC116284
0.9264 High Similarity NPC474507
0.9216 High Similarity NPC326316
0.9216 High Similarity NPC81733
0.9207 High Similarity NPC477561
0.9207 High Similarity NPC312918
0.9207 High Similarity NPC155442
0.9207 High Similarity NPC476574
0.9141 High Similarity NPC476577
0.9141 High Similarity NPC148709
0.9141 High Similarity NPC173416
0.9125 High Similarity NPC298979
0.9119 High Similarity NPC302527
0.9119 High Similarity NPC167546
0.9119 High Similarity NPC16805
0.9096 High Similarity NPC135772
0.9062 High Similarity NPC24264
0.9062 High Similarity NPC476432
0.9038 High Similarity NPC276588
0.9038 High Similarity NPC110416
0.9038 High Similarity NPC207757
0.9038 High Similarity NPC204828
0.9038 High Similarity NPC295691
0.9038 High Similarity NPC39701
0.9038 High Similarity NPC172765
0.9038 High Similarity NPC278799
0.9038 High Similarity NPC189266
0.9038 High Similarity NPC127674
0.9038 High Similarity NPC54379
0.9038 High Similarity NPC2413
0.9038 High Similarity NPC184026
0.9038 High Similarity NPC469817
0.9038 High Similarity NPC5238
0.9038 High Similarity NPC249797
0.9038 High Similarity NPC193949
0.9026 High Similarity NPC192768
0.9026 High Similarity NPC88249
0.9026 High Similarity NPC151895
0.9026 High Similarity NPC97221
0.9026 High Similarity NPC220858
0.902 High Similarity NPC428
0.902 High Similarity NPC246587
0.902 High Similarity NPC135538
0.902 High Similarity NPC24233
0.902 High Similarity NPC476571
0.902 High Similarity NPC147390
0.9006 High Similarity NPC247389
0.9006 High Similarity NPC210918
0.9 High Similarity NPC225774
0.9 High Similarity NPC24465
0.8994 High Similarity NPC82763
0.8981 High Similarity NPC186063
0.8961 High Similarity NPC477565
0.8961 High Similarity NPC103379
0.8954 High Similarity NPC321505
0.8954 High Similarity NPC191376
0.8954 High Similarity NPC179825
0.8944 High Similarity NPC13916
0.8944 High Similarity NPC264850
0.8944 High Similarity NPC219341
0.8935 High Similarity NPC476576
0.8935 High Similarity NPC186546
0.8922 High Similarity NPC248642
0.8916 High Similarity NPC126284
0.8889 High Similarity NPC478093
0.8889 High Similarity NPC204947
0.8876 High Similarity NPC320088
0.8869 High Similarity NPC156576
0.8861 High Similarity NPC203784
0.8861 High Similarity NPC170503
0.8861 High Similarity NPC126519
0.8848 High Similarity NPC477558
0.8841 High Similarity NPC149090
0.8841 High Similarity NPC19520
0.8837 High Similarity NPC473589
0.8837 High Similarity NPC478092
0.8837 High Similarity NPC30182
0.8837 High Similarity NPC478091
0.8831 High Similarity NPC476151
0.8824 High Similarity NPC185838
0.8812 High Similarity NPC160298
0.8812 High Similarity NPC232924
0.8812 High Similarity NPC266753
0.8812 High Similarity NPC477559
0.8812 High Similarity NPC306902
0.8802 High Similarity NPC32154
0.8797 High Similarity NPC244112
0.878 High Similarity NPC6152
0.8773 High Similarity NPC150879
0.8773 High Similarity NPC210140
0.8765 High Similarity NPC57036
0.872 High Similarity NPC83198
0.872 High Similarity NPC204908
0.8712 High Similarity NPC124657
0.8696 High Similarity NPC235143
0.8696 High Similarity NPC205167
0.8696 High Similarity NPC205255
0.8696 High Similarity NPC271388
0.8696 High Similarity NPC230956
0.8696 High Similarity NPC119649
0.8696 High Similarity NPC249274
0.8683 High Similarity NPC241704
0.8671 High Similarity NPC26601
0.8667 High Similarity NPC152212
0.8655 High Similarity NPC214116
0.865 High Similarity NPC276944
0.865 High Similarity NPC232514
0.865 High Similarity NPC238530
0.865 High Similarity NPC169743
0.865 High Similarity NPC134858
0.8647 High Similarity NPC33902
0.8647 High Similarity NPC276674
0.8642 High Similarity NPC80759
0.8642 High Similarity NPC79402
0.8634 High Similarity NPC221864
0.8634 High Similarity NPC111485
0.8631 High Similarity NPC118633
0.8631 High Similarity NPC148693
0.8631 High Similarity NPC294790
0.8623 High Similarity NPC329969
0.8616 High Similarity NPC2295
0.8616 High Similarity NPC477564
0.8614 High Similarity NPC231371
0.8608 High Similarity NPC277669
0.8608 High Similarity NPC76213
0.8605 High Similarity NPC275680
0.8605 High Similarity NPC22115
0.859 High Similarity NPC16107
0.859 High Similarity NPC210437
0.859 High Similarity NPC476144
0.859 High Similarity NPC106295
0.859 High Similarity NPC51957
0.8589 High Similarity NPC233650
0.858 High Similarity NPC220961
0.8571 High Similarity NPC128019
0.8571 High Similarity NPC476567
0.8571 High Similarity NPC136860
0.8563 High Similarity NPC78284
0.8563 High Similarity NPC152680
0.8563 High Similarity NPC190783
0.8563 High Similarity NPC232386
0.8562 High Similarity NPC213206
0.8562 High Similarity NPC188163
0.8562 High Similarity NPC470925
0.8562 High Similarity NPC474915
0.8562 High Similarity NPC328750
0.8535 High Similarity NPC7467
0.8535 High Similarity NPC130941
0.8529 High Similarity NPC286119
0.8521 High Similarity NPC190461
0.8506 High Similarity NPC475754
0.8497 Intermediate Similarity NPC314682
0.8494 Intermediate Similarity NPC241055
0.8488 Intermediate Similarity NPC16357
0.8488 Intermediate Similarity NPC302245
0.8488 Intermediate Similarity NPC95426
0.8485 Intermediate Similarity NPC240841
0.8485 Intermediate Similarity NPC42549
0.8485 Intermediate Similarity NPC250846

  Chemically structural similarity: II. Similar Clinical/Approved Drugs

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules.

●  The left chart: Distribution of similarity level between NPC13504 and all drugs/candidates.
●  The right table: Most similar clinical/approved drugs (Tc>=0.56 or Top200).

Similarity Score Similarity Level Drug ID Developmental Stage
0.8889 High Similarity NPD2420 Approved
0.8889 High Similarity NPD2421 Approved
0.8606 High Similarity NPD27 Approved
0.8606 High Similarity NPD2489 Approved
0.8598 High Similarity NPD3051 Approved
0.859 High Similarity NPD4584 Approved
0.8562 High Similarity NPD4664 Clinical (unspecified phase)
0.8545 High Similarity NPD2970 Approved
0.8545 High Similarity NPD2969 Approved
0.848 Intermediate Similarity NPD8053 Approved
0.848 Intermediate Similarity NPD8054 Approved
0.8439 Intermediate Similarity NPD7906 Approved
0.8314 Intermediate Similarity NPD4577 Approved
0.8314 Intermediate Similarity NPD7312 Approved
0.8314 Intermediate Similarity NPD4578 Approved
0.8314 Intermediate Similarity NPD7311 Approved
0.8314 Intermediate Similarity NPD7313 Approved
0.8314 Intermediate Similarity NPD7310 Approved
0.8276 Intermediate Similarity NPD4663 Approved
0.8274 Intermediate Similarity NPD2898 Approved
0.8266 Intermediate Similarity NPD7309 Approved
0.8263 Intermediate Similarity NPD4010 Discontinued
0.8171 Intermediate Similarity NPD6818 Clinical (unspecified phase)
0.8165 Intermediate Similarity NPD5241 Discontinued
0.8144 Intermediate Similarity NPD7201 Clinical (unspecified phase)
0.8113 Intermediate Similarity NPD3845 Phase 1
0.8113 Intermediate Similarity NPD2422 Clinical (unspecified phase)
0.807 Intermediate Similarity NPD8252 Approved
0.807 Intermediate Similarity NPD8251 Approved
0.807 Intermediate Similarity NPD8099 Discontinued
0.8059 Intermediate Similarity NPD4481 Phase 3
0.8034 Intermediate Similarity NPD2490 Approved
0.8034 Intermediate Similarity NPD2488 Approved
0.8024 Intermediate Similarity NPD7831 Phase 2
0.8024 Intermediate Similarity NPD7833 Phase 2
0.8024 Intermediate Similarity NPD7832 Clinical (unspecified phase)
0.8023 Intermediate Similarity NPD8156 Discontinued
0.8 Intermediate Similarity NPD7298 Approved
0.8 Intermediate Similarity NPD3534 Clinical (unspecified phase)
0.7964 Intermediate Similarity NPD6788 Approved
0.7939 Intermediate Similarity NPD4773 Phase 2
0.7939 Intermediate Similarity NPD4772 Phase 2
0.7927 Intermediate Similarity NPD4017 Approved
0.7901 Intermediate Similarity NPD1754 Clinical (unspecified phase)
0.7841 Intermediate Similarity NPD8453 Clinical (unspecified phase)
0.7838 Intermediate Similarity NPD3450 Approved
0.7838 Intermediate Similarity NPD2494 Approved
0.7838 Intermediate Similarity NPD2493 Approved
0.7838 Intermediate Similarity NPD3452 Approved
0.7836 Intermediate Similarity NPD6071 Discontinued
0.7805 Intermediate Similarity NPD3640 Phase 3
0.7805 Intermediate Similarity NPD3639 Approved
0.7805 Intermediate Similarity NPD3641 Approved
0.7798 Intermediate Similarity NPD2560 Approved
0.7798 Intermediate Similarity NPD2563 Approved
0.7756 Intermediate Similarity NPD3110 Approved
0.7756 Intermediate Similarity NPD3109 Approved
0.7751 Intermediate Similarity NPD4581 Clinical (unspecified phase)
0.7713 Intermediate Similarity NPD4583 Approved
0.7713 Intermediate Similarity NPD4582 Approved
0.7697 Intermediate Similarity NPD2971 Approved
0.7697 Intermediate Similarity NPD2968 Approved
0.7697 Intermediate Similarity NPD6030 Approved
0.7697 Intermediate Similarity NPD6031 Approved
0.7673 Intermediate Similarity NPD6029 Clinical (unspecified phase)
0.7673 Intermediate Similarity NPD6028 Clinical (unspecified phase)
0.7663 Intermediate Similarity NPD7667 Clinical (unspecified phase)
0.766 Intermediate Similarity NPD4002 Approved
0.766 Intermediate Similarity NPD4004 Approved
0.7625 Intermediate Similarity NPD1632 Clinical (unspecified phase)
0.7622 Intermediate Similarity NPD2973 Approved
0.7622 Intermediate Similarity NPD2974 Approved
0.7622 Intermediate Similarity NPD2975 Approved
0.7602 Intermediate Similarity NPD4055 Discovery
0.7564 Intermediate Similarity NPD5155 Approved
0.7564 Intermediate Similarity NPD2669 Clinical (unspecified phase)
0.7564 Intermediate Similarity NPD5156 Approved
0.753 Intermediate Similarity NPD6090 Discontinued
0.7516 Intermediate Similarity NPD5718 Phase 2
0.75 Intermediate Similarity NPD3594 Approved
0.75 Intermediate Similarity NPD2605 Approved
0.75 Intermediate Similarity NPD5602 Clinical (unspecified phase)
0.75 Intermediate Similarity NPD7047 Phase 3
0.75 Intermediate Similarity NPD7261 Clinical (unspecified phase)
0.75 Intermediate Similarity NPD2606 Approved
0.75 Intermediate Similarity NPD4580 Approved
0.75 Intermediate Similarity NPD3595 Approved
0.75 Intermediate Similarity NPD5084 Clinical (unspecified phase)
0.7485 Intermediate Similarity NPD3060 Approved
0.7485 Intermediate Similarity NPD5177 Phase 3
0.7471 Intermediate Similarity NPD7802 Discontinued
0.7469 Intermediate Similarity NPD4726 Approved
0.7469 Intermediate Similarity NPD4725 Approved
0.7469 Intermediate Similarity NPD4721 Approved
0.7468 Intermediate Similarity NPD2674 Phase 3
0.7453 Intermediate Similarity NPD1753 Discontinued
0.745 Intermediate Similarity NPD6997 Phase 2
0.7436 Intermediate Similarity NPD3637 Approved
0.7436 Intermediate Similarity NPD3636 Approved
0.7436 Intermediate Similarity NPD3635 Approved
0.7435 Intermediate Similarity NPD4040 Phase 1
0.743 Intermediate Similarity NPD6297 Approved
0.7427 Intermediate Similarity NPD2978 Approved
0.7427 Intermediate Similarity NPD2977 Approved
0.7416 Intermediate Similarity NPD6042 Phase 2
0.7416 Intermediate Similarity NPD42 Phase 2
0.7396 Intermediate Similarity NPD4005 Discontinued
0.7394 Intermediate Similarity NPD5307 Clinical (unspecified phase)
0.7371 Intermediate Similarity NPD6107 Approved
0.7365 Intermediate Similarity NPD1424 Approved
0.7362 Intermediate Similarity NPD2029 Clinical (unspecified phase)
0.7358 Intermediate Similarity NPD4474 Approved
0.7358 Intermediate Similarity NPD4475 Approved
0.733 Intermediate Similarity NPD3448 Approved
0.733 Intermediate Similarity NPD2491 Approved
0.733 Intermediate Similarity NPD3057 Approved
0.7314 Intermediate Similarity NPD4666 Phase 3
0.7308 Intermediate Similarity NPD5917 Clinical (unspecified phase)
0.7305 Intermediate Similarity NPD3124 Discontinued
0.7296 Intermediate Similarity NPD3145 Approved
0.7296 Intermediate Similarity NPD3144 Approved
0.7284 Intermediate Similarity NPD6896 Approved
0.7284 Intermediate Similarity NPD6895 Approved
0.7278 Intermediate Similarity NPD5752 Clinical (unspecified phase)
0.7273 Intermediate Similarity NPD4236 Phase 3
0.7273 Intermediate Similarity NPD4237 Approved
0.7268 Intermediate Similarity NPD7090 Clinical (unspecified phase)
0.7268 Intermediate Similarity NPD6851 Approved
0.7268 Intermediate Similarity NPD6853 Approved
0.7263 Intermediate Similarity NPD8095 Phase 1
0.7262 Intermediate Similarity NPD4160 Clinical (unspecified phase)
0.7262 Intermediate Similarity NPD4123 Phase 3
0.7257 Intermediate Similarity NPD5709 Phase 3
0.7246 Intermediate Similarity NPD6667 Approved
0.7246 Intermediate Similarity NPD7124 Phase 2
0.7246 Intermediate Similarity NPD6783 Clinical (unspecified phase)
0.7246 Intermediate Similarity NPD6666 Approved
0.724 Intermediate Similarity NPD2972 Approved
0.724 Intermediate Similarity NPD3533 Approved
0.7232 Intermediate Similarity NPD4166 Phase 2
0.7229 Intermediate Similarity NPD5754 Discontinued
0.7219 Intermediate Similarity NPD3647 Clinical (unspecified phase)
0.7212 Intermediate Similarity NPD4257 Approved
0.7212 Intermediate Similarity NPD4256 Phase 2
0.7209 Intermediate Similarity NPD6072 Discontinued
0.7202 Intermediate Similarity NPD7598 Phase 2
0.7193 Intermediate Similarity NPD6523 Clinical (unspecified phase)
0.7191 Intermediate Similarity NPD6688 Approved
0.7191 Intermediate Similarity NPD6687 Approved
0.7186 Intermediate Similarity NPD5160 Discontinued
0.7182 Intermediate Similarity NPD7479 Phase 2
0.7178 Intermediate Similarity NPD7718 Clinical (unspecified phase)
0.7176 Intermediate Similarity NPD4727 Phase 1
0.7176 Intermediate Similarity NPD5976 Discontinued
0.7172 Intermediate Similarity NPD7827 Phase 1
0.716 Intermediate Similarity NPD7447 Phase 1
0.7135 Intermediate Similarity NPD6747 Phase 1
0.7135 Intermediate Similarity NPD5087 Clinical (unspecified phase)
0.7127 Intermediate Similarity NPD4873 Discontinued
0.7127 Intermediate Similarity NPD5312 Approved
0.7127 Intermediate Similarity NPD5313 Approved
0.7126 Intermediate Similarity NPD6748 Discontinued
0.7126 Intermediate Similarity NPD5772 Approved
0.7126 Intermediate Similarity NPD5773 Approved
0.7124 Intermediate Similarity NPD2226 Clinical (unspecified phase)
0.712 Intermediate Similarity NPD4420 Approved
0.7118 Intermediate Similarity NPD5261 Clinical (unspecified phase)
0.7117 Intermediate Similarity NPD4579 Clinical (unspecified phase)
0.7108 Intermediate Similarity NPD7037 Approved
0.7102 Intermediate Similarity NPD5604 Discontinued
0.7101 Intermediate Similarity NPD7213 Phase 3
0.7101 Intermediate Similarity NPD7212 Phase 2
0.7099 Intermediate Similarity NPD2238 Phase 2
0.7089 Intermediate Similarity NPD3053 Approved
0.7089 Intermediate Similarity NPD3055 Approved
0.7086 Intermediate Similarity NPD5977 Approved
0.7086 Intermediate Similarity NPD5978 Approved
0.7083 Intermediate Similarity NPD3692 Discontinued
0.7081 Intermediate Similarity NPD6812 Clinical (unspecified phase)
0.7078 Intermediate Similarity NPD4093 Discontinued
0.7076 Intermediate Similarity NPD1914 Approved
0.7076 Intermediate Similarity NPD2122 Discontinued
0.7074 Intermediate Similarity NPD6656 Clinical (unspecified phase)
0.707 Intermediate Similarity NPD1669 Approved
0.7066 Intermediate Similarity NPD4162 Approved
0.7065 Intermediate Similarity NPD7549 Discontinued
0.7062 Intermediate Similarity NPD7400 Phase 3
0.7059 Intermediate Similarity NPD7907 Approved
0.7052 Intermediate Similarity NPD4675 Approved
0.7052 Intermediate Similarity NPD4678 Approved
0.7049 Intermediate Similarity NPD6996 Clinical (unspecified phase)
0.7047 Intermediate Similarity NPD6612 Phase 2
0.7047 Intermediate Similarity NPD4107 Approved
0.7035 Intermediate Similarity NPD5676 Approved
0.7029 Intermediate Similarity NPD4585 Approved
0.7024 Intermediate Similarity NPD6331 Phase 2
0.7022 Intermediate Similarity NPD5677 Discontinued
0.7013 Intermediate Similarity NPD5303 Approved
0.7013 Intermediate Similarity NPD5304 Approved
0.7012 Intermediate Similarity NPD823 Approved

  Bioactivity similarity: Similar Natural Products in NPASS

Bioactivity similarity was calculated based on bioactivity descriptors of compounds. The bioactivity descriptors were calculated by a recently developed AI algorithm Chemical Checker (CC) [Nature Biotechnology, 38:1087–1096, 2020; Nature Communications, 12:3932, 2021], which evaluated bioactivity similarities at five levels:
A: chemistry similarity;
B: biological targets similarity;
C: networks similarity;
D: cell-based bioactivity similarity;
E: similarity based on clinical data.

Those 5 categories of CC bioactivity descriptors were calculated and then subjected to manifold projection using UMAP algorithm, to project all NPs on a 2-Dimensional space. The current NP was highlighted with a small circle in the 2-D map. Below figures: left-to-right, A-to-E.

A: chemistry similarity
B: biological targets similarity
C: networks similarity
D: cell-based bioactivity similarity
E: similarity based on clinical data