Structure

Physi-Chem Properties

Molecular Weight:  322.25
Volume:  358.461
LogP:  3.836
LogD:  3.627
LogS:  -3.855
# Rotatable Bonds:  6
TPSA:  57.53
# H-Bond Aceptor:  3
# H-Bond Donor:  2
# Rings:  2
# Heavy Atoms:  3

MedChem Properties

QED Drug-Likeness Score:  0.7
Synthetic Accessibility Score:  4.154
Fsp3:  0.85
Lipinski Rule-of-5:  Accepted
Pfizer Rule:  Rejected
GSK Rule:  Accepted
BMS Rule:  0
Golden Triangle Rule:  Accepted
Chelating Alert:  0
PAINS Alert:  0

ADMET Properties (ADMETlab2.0)

ADMET: Absorption

Caco-2 Permeability:  -5.223
MDCK Permeability:  1.2103554581699427e-05
Pgp-inhibitor:  0.036
Pgp-substrate:  0.001
Human Intestinal Absorption (HIA):  0.004
20% Bioavailability (F20%):  0.351
30% Bioavailability (F30%):  0.006

ADMET: Distribution

Blood-Brain-Barrier Penetration (BBB):  0.401
Plasma Protein Binding (PPB):  66.71683502197266%
Volume Distribution (VD):  0.491
Pgp-substrate:  19.541488647460938%

ADMET: Metabolism

CYP1A2-inhibitor:  0.031
CYP1A2-substrate:  0.217
CYP2C19-inhibitor:  0.015
CYP2C19-substrate:  0.753
CYP2C9-inhibitor:  0.07
CYP2C9-substrate:  0.471
CYP2D6-inhibitor:  0.002
CYP2D6-substrate:  0.113
CYP3A4-inhibitor:  0.097
CYP3A4-substrate:  0.101

ADMET: Excretion

Clearance (CL):  3.643
Half-life (T1/2):  0.373

ADMET: Toxicity

hERG Blockers:  0.012
Human Hepatotoxicity (H-HT):  0.145
Drug-inuced Liver Injury (DILI):  0.038
AMES Toxicity:  0.008
Rat Oral Acute Toxicity:  0.074
Maximum Recommended Daily Dose:  0.624
Skin Sensitization:  0.739
Carcinogencity:  0.189
Eye Corrosion:  0.768
Eye Irritation:  0.717
Respiratory Toxicity:  0.925

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  Natural Product: NPC91369

Natural Product ID:  NPC91369
Common Name*:   Imbricatolic Acid
IUPAC Name:   (1S,4aR,5S,8aR)-5-[(3S)-5-hydroxy-3-methylpentyl]-1,4a-dimethyl-6-methylidene-3,4,5,7,8,8a-hexahydro-2H-naphthalene-1-carboxylic acid
Synonyms:   Imbricatolic Acid
Standard InCHIKey:  NSRKLZRKJJQJLD-BEUFEYIVSA-N
Standard InCHI:  InChI=1S/C20H34O3/c1-14(10-13-21)6-8-16-15(2)7-9-17-19(16,3)11-5-12-20(17,4)18(22)23/h14,16-17,21H,2,5-13H2,1,3-4H3,(H,22,23)/t14-,16-,17+,19+,20-/m0/s1
SMILES:  OCC[C@H](CC[C@H]1C(=C)CC[C@@H]2[C@]1(C)CCC[C@]2(C)C(=O)O)C
Synthetic Gene Cluster:   n.a.
ChEMBL Identifier:   CHEMBL2048004
PubChem CID:   70688370
Chemical Classification**:  
  • CHEMONTID:0000000 [Organic compounds]
    • [CHEMONTID:0000012] Lipids and lipid-like molecules
      • [CHEMONTID:0000259] Prenol lipids
        • [CHEMONTID:0001551] Diterpenoids

*Note: the InCHIKey will be temporarily assigned as the "Common Name" if no IUPAC name or alternative short name is available.
**Note: the Chemical Classification was calculated by NPClassifier Version 1.5. Reference: PMID:34662515.

  Species Source

Organism ID Organism Name Taxonomy Level Family SuperKingdom Isolation Part Collection Location Collection Time Reference
NPO2300 Actinidia deliciosa Species Actinidiaceae Eukaryota Fruits Spanish DOI[10.1021/jf00010a019]
NPO2300 Actinidia deliciosa Species Actinidiaceae Eukaryota Fruits n.a. DOI[10.1021/jf00016a013]
NPO2300 Actinidia deliciosa Species Actinidiaceae Eukaryota n.a. Germany DOI[10.1021/jf00016a013]
NPO2300 Actinidia deliciosa Species Actinidiaceae Eukaryota n.a. Italy DOI[10.1021/jf00016a013]
NPO2300 Actinidia deliciosa Species Actinidiaceae Eukaryota Fruits Turkey DOI[10.1111/j.1745-4557.2003.tb00250.x]
NPO2300 Actinidia deliciosa Species Actinidiaceae Eukaryota Fruits n.a. DOI[10.17660/ActaHortic.2003.610.16]
NPO2300 Actinidia deliciosa Species Actinidiaceae Eukaryota Fruits n.a. PMID[10794642]
NPO2300 Actinidia deliciosa Species Actinidiaceae Eukaryota Fruits n.a. PMID[10820090]
NPO7925 Asparagus officinalis Species Asparagaceae Eukaryota n.a. n.a. n.a. PMID[11032480]
NPO2300 Actinidia deliciosa Species Actinidiaceae Eukaryota Fruits n.a. PMID[11754554]
NPO2300 Actinidia deliciosa Species Actinidiaceae Eukaryota Fruits n.a. PMID[15315387]
NPO2300 Actinidia deliciosa Species Actinidiaceae Eukaryota Fruits n.a. PMID[16076125]
NPO2300 Actinidia deliciosa Species Actinidiaceae Eukaryota Fruits n.a. PMID[16920856]
NPO2300 Actinidia deliciosa Species Actinidiaceae Eukaryota Fruits n.a. PMID[19358604]
NPO13135 Campylotropis hirtella Species Fabaceae Eukaryota n.a. n.a. n.a. PMID[19481938]
NPO2300 Actinidia deliciosa Species Actinidiaceae Eukaryota Fruits n.a. PMID[21190690]
NPO6674 Burkholderia ambifaria Species Burkholderiaceae Bacteria n.a. n.a. n.a. PMID[22988812]
NPO2300 Actinidia deliciosa Species Actinidiaceae Eukaryota Fruits n.a. PMID[23394984]
NPO2300 Actinidia deliciosa Species Actinidiaceae Eukaryota n.a. Germany PMID[23394984]
NPO2300 Actinidia deliciosa Species Actinidiaceae Eukaryota n.a. New Zealand PMID[23394984]
NPO2300 Actinidia deliciosa Species Actinidiaceae Eukaryota Fruits n.a. PMID[2413754]
NPO17386 Securidaca longepedunculata Species Polygalaceae Eukaryota n.a. n.a. n.a. PMID[24216090]
NPO12796 Periploca sepium Species Apocynaceae Eukaryota n.a. n.a. n.a. PMID[28294615]
NPO11257 Momordica dioica Species Cucurbitaceae Eukaryota n.a. n.a. n.a. PMID[30673219]
NPO865 Dendrobium loddigesii Species Orchidaceae Eukaryota n.a. n.a. n.a. PMID[31291099]
NPO7925 Asparagus officinalis Species Asparagaceae Eukaryota n.a. n.a. n.a. PMID[6821187]
NPO2300 Actinidia deliciosa Species Actinidiaceae Eukaryota Fruits n.a. PMID[9542132]
NPO7925 Asparagus officinalis Species Asparagaceae Eukaryota n.a. n.a. Database[FooDB]
NPO7925 Asparagus officinalis Species Asparagaceae Eukaryota Seed n.a. n.a. Database[FooDB]
NPO7925 Asparagus officinalis Species Asparagaceae Eukaryota Shoot n.a. n.a. Database[FooDB]
NPO7925 Asparagus officinalis Species Asparagaceae Eukaryota n.a. n.a. Database[FooDB]
NPO13135 Campylotropis hirtella Species Fabaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO865 Dendrobium loddigesii Species Orchidaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO7925 Asparagus officinalis Species Asparagaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO6731 Ononis spinosa Species Fabaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO7773 Crinum moorei Species Amaryllidaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO12796 Periploca sepium Species Apocynaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO11097 Lepidium apetalum Species Brassicaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO7925 Asparagus officinalis Species Asparagaceae Eukaryota n.a. n.a. Database[Phenol-Explorer]
NPO13135 Campylotropis hirtella Species Fabaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO2300 Actinidia deliciosa Species Actinidiaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO12796 Periploca sepium Species Apocynaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO11097 Lepidium apetalum Species Brassicaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO6731 Ononis spinosa Species Fabaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO7925 Asparagus officinalis Species Asparagaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO6671 Ulva conglobata Species Ulvaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO11257 Momordica dioica Species Cucurbitaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO7773 Crinum moorei Species Amaryllidaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO865 Dendrobium loddigesii Species Orchidaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO11257 Momordica dioica Species Cucurbitaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO7925 Asparagus officinalis Species Asparagaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO6731 Ononis spinosa Species Fabaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO865 Dendrobium loddigesii Species Orchidaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO12796 Periploca sepium Species Apocynaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO11097 Lepidium apetalum Species Brassicaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO12796 Periploca sepium Species Apocynaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO865 Dendrobium loddigesii Species Orchidaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO11097 Lepidium apetalum Species Brassicaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO9704 Sonneratia caseolaris Species Lythraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO9319 Pterocaulon virgatum Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO8934 Gypsophila perfoliata Species Caryophyllaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO23384 Rhodiola semenovii Species Crassulaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO21720 Talaromyces variabilis Species Trichocomaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO17386 Securidaca longepedunculata Species Polygalaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO3740 Trisetum flavescens Species Poaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO865 Dendrobium loddigesii Species Orchidaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO7822.1 Eucalyptus globulus subsp. bicostata Subspecies Myrtaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO19898 Stevia lucida Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO3385 Cassine transvaalensis Species Celastraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO6671 Ulva conglobata Species Ulvaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO10638 Plectranthus myrianthus Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO9532 Vernonia cistifolia Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO5827 Dalea tuberculata Species Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO3873 Crotalaria candicans Species Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO12091 Martensia denticulata Species Delesseriaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO2384 Ircinia ramosa Species Irciniidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO9512 Phlomis fruticosa Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO936 Pinalia spicata Species Orchidaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO526 Salvia sessei Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO13135 Campylotropis hirtella Species Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO6289 Ceropegia dichotoma Species Apocynaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO10738 Cotoneaster horizontalis Species Rosaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO2300 Actinidia deliciosa Species Actinidiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO6731 Ononis spinosa Species Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO12998 Salvia rubescens Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO5456 Juniperus drupacea Species Cupressaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO11555 Pterocaulon purpurascens Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO11843 Stephania zippeliana Species Menispermaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO12205 Eucalyptus apodophylla Species Myrtaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO12192 Coronilla scorpioides Species Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO11097 Lepidium apetalum Species Brassicaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO12565 Hypericum polyanthemum Species Hypericaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO11576 Glycosmis macrophylla Species Rutaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO7345 Ptilonia magellanica Species Bonnemaisoniaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO7773 Crinum moorei Species Amaryllidaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO11257 Momordica dioica Species Cucurbitaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO11190 Veronica polita Species Plantaginaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO6938 Astragalus dissectus Species Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO8484 Codonopsis lanceolata Species Campanulaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO6674 Burkholderia ambifaria Species Burkholderiaceae Bacteria n.a. n.a. n.a. Database[UNPD]
NPO5013 Loranthus spicatus Species Loranthaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO10399 Manfreda virginica Species Asparagaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO9928 Cephalaria cilicica Species Caprifoliaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO12891 Minasia alpestris Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO10922 Pentaclethra macrophylla Species Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO7048 Eucalyptus rariflora Species Myrtaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO1257 Distephanus angulifolius Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO1185 Stereocaulon strictum Species Stereocaulaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO7925 Asparagus officinalis Species Asparagaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO10605 Tristania conferta Species Myrtaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO7705 Navanax inermis Species Aglajidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO9040 Elsinoe annonae Species Elsinoaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO468 Dryopteris oligophlebia Species Dryopteridaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO5392 Pachycereus pecten-aboriginum Species Cactaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO9307 Ficus indica Species Ficidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO16164 Podocarpus urbani Species Podocarpaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO11815 Mikania hirsutissima Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO8186 Ocotea minarum Species Lauraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO6256 Eucalyptus umbra Species Myrtaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO22691 Mentha cardiaca Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO1815 Breonia chinensis Species Rubiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO12796 Periploca sepium Species Apocynaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO5043 Eria japonica Species Orchidaceae Eukaryota n.a. n.a. n.a. Database[UNPD]

☑ Note for Reference:
In addition to directly collecting NP source organism data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated them from below databases:
UNPD: Universal Natural Products Database [PMID: 23638153].
StreptomeDB: a database of streptomycetes natural products [PMID: 33051671].
TM-MC: a database of medicinal materials and chemical compounds in Northeast Asian traditional medicine [PMID: 26156871].
TCM@Taiwan: a Traditional Chinese Medicine database [PMID: 21253603].
TCMID: a Traditional Chinese Medicine database [PMID: 29106634].
TCMSP: The traditional Chinese medicine systems pharmacology database and analysis platform [PMID: 24735618].
HerDing: a herb recommendation system to treat diseases using genes and chemicals [PMID: 26980517].
MetaboLights: a metabolomics database [PMID: 27010336].
FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].

  NP Quantity Composition/Concentration

Organism ID NP ID Organism Material Preparation Organism Part NP Quantity (Standard) NP Quantity (Minimum) NP Quantity (Maximum) Quantity Unit Reference

☑ Note for Reference:
In addition to directly collecting NP quantitative data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated NP quantitative records for specific NP domains (e.g., NPS from foods or herbs) from domain-specific databases. These databases include:
DUKE: Dr. Duke's Phytochemical and Ethnobotanical Databases.
PHENOL EXPLORER: is the first comprehensive database on polyphenol content in foods [PMID: 24103452], its homepage can be accessed at here.
FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].

  Biological Activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference
NPT839 Cell Line L6 Rattus norvegicus Activity = 34.41 % PMID[519994]
NPT178 Individual Protein Protein-tyrosine phosphatase 1B Homo sapiens IC50 = 8800.0 nM PMID[519995]
NPT178 Individual Protein Protein-tyrosine phosphatase 1B Homo sapiens Inhibition = 5.9 % PMID[519995]
NPT178 Individual Protein Protein-tyrosine phosphatase 1B Homo sapiens Inhibition = 19.2 % PMID[519995]
NPT178 Individual Protein Protein-tyrosine phosphatase 1B Homo sapiens Inhibition = 59.2 % PMID[519995]
NPT178 Individual Protein Protein-tyrosine phosphatase 1B Homo sapiens Inhibition = 67.2 % PMID[519995]
NPT178 Individual Protein Protein-tyrosine phosphatase 1B Homo sapiens Inhibition = 71.1 % PMID[519995]

☑ Note for Activity Records:
☉ The quantitative biological activities were primarily integrated from ChEMBL (Version-30) database and were also directly collected from PubMed literature. PubMed PMID was provided as the reference link for each activity record.

  Chemically structural similarity: I. Similar Active Natural Products in NPASS

Top-200 similar NPs were calculated against the active-NP-set (includes 4,3285 NPs with experimentally-derived bioactivity available in NPASS)

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules. Tc lies between [0, 1] where '1' indicates the highest similarity. What is Tanimoto coefficient

●  The left chart: Distribution of similarity level between NPC91369 and all remaining natural products in the NPASS database.
●  The right table: Most similar natural products (Tc>=0.56 or Top200).

Similarity Score Similarity Level Natural Product ID
0.9552 High Similarity NPC72343
0.9394 High Similarity NPC290445
0.9394 High Similarity NPC36616
0.9286 High Similarity NPC476601
0.9028 High Similarity NPC239098
0.8889 High Similarity NPC474433
0.8857 High Similarity NPC36310
0.8767 High Similarity NPC269543
0.8767 High Similarity NPC247783
0.8732 High Similarity NPC46610
0.8732 High Similarity NPC18819
0.8611 High Similarity NPC476844
0.8592 High Similarity NPC161187
0.8592 High Similarity NPC330659
0.8592 High Similarity NPC244708
0.8571 High Similarity NPC235586
0.8514 High Similarity NPC59436
0.8514 High Similarity NPC476810
0.8493 Intermediate Similarity NPC89294
0.8493 Intermediate Similarity NPC246445
0.8493 Intermediate Similarity NPC20466
0.8472 Intermediate Similarity NPC183503
0.8472 Intermediate Similarity NPC3753
0.8472 Intermediate Similarity NPC283908
0.8472 Intermediate Similarity NPC237591
0.8472 Intermediate Similarity NPC255168
0.8472 Intermediate Similarity NPC161923
0.8472 Intermediate Similarity NPC103958
0.8451 Intermediate Similarity NPC160817
0.8442 Intermediate Similarity NPC245866
0.8421 Intermediate Similarity NPC14203
0.8421 Intermediate Similarity NPC229584
0.84 Intermediate Similarity NPC327674
0.8378 Intermediate Similarity NPC107039
0.8378 Intermediate Similarity NPC66105
0.8378 Intermediate Similarity NPC471899
0.8378 Intermediate Similarity NPC471897
0.8378 Intermediate Similarity NPC68828
0.8378 Intermediate Similarity NPC238227
0.8378 Intermediate Similarity NPC469867
0.8356 Intermediate Similarity NPC192540
0.8356 Intermediate Similarity NPC279666
0.8333 Intermediate Similarity NPC279241
0.8333 Intermediate Similarity NPC263974
0.8333 Intermediate Similarity NPC476038
0.8333 Intermediate Similarity NPC472813
0.8333 Intermediate Similarity NPC194937
0.8312 Intermediate Similarity NPC170985
0.8312 Intermediate Similarity NPC476292
0.8312 Intermediate Similarity NPC474605
0.8289 Intermediate Similarity NPC104545
0.8267 Intermediate Similarity NPC476986
0.8267 Intermediate Similarity NPC280654
0.8267 Intermediate Similarity NPC470905
0.8267 Intermediate Similarity NPC321514
0.8267 Intermediate Similarity NPC260385
0.8267 Intermediate Similarity NPC321690
0.8267 Intermediate Similarity NPC110094
0.8261 Intermediate Similarity NPC103734
0.8243 Intermediate Similarity NPC69143
0.8228 Intermediate Similarity NPC294438
0.8228 Intermediate Similarity NPC201655
0.8228 Intermediate Similarity NPC264317
0.8228 Intermediate Similarity NPC283733
0.8219 Intermediate Similarity NPC251970
0.8219 Intermediate Similarity NPC476046
0.8219 Intermediate Similarity NPC241854
0.8219 Intermediate Similarity NPC166797
0.8205 Intermediate Similarity NPC471037
0.8205 Intermediate Similarity NPC215893
0.8205 Intermediate Similarity NPC312480
0.8182 Intermediate Similarity NPC473420
0.8182 Intermediate Similarity NPC40228
0.8182 Intermediate Similarity NPC327002
0.8182 Intermediate Similarity NPC209318
0.8182 Intermediate Similarity NPC90055
0.8182 Intermediate Similarity NPC223330
0.8158 Intermediate Similarity NPC16394
0.8158 Intermediate Similarity NPC263951
0.8158 Intermediate Similarity NPC231431
0.8158 Intermediate Similarity NPC158846
0.8158 Intermediate Similarity NPC192744
0.8158 Intermediate Similarity NPC201459
0.8158 Intermediate Similarity NPC199595
0.8133 Intermediate Similarity NPC106078
0.8133 Intermediate Similarity NPC165711
0.8133 Intermediate Similarity NPC212661
0.8133 Intermediate Similarity NPC61952
0.8133 Intermediate Similarity NPC471035
0.8133 Intermediate Similarity NPC149249
0.8125 Intermediate Similarity NPC12774
0.8125 Intermediate Similarity NPC325594
0.8125 Intermediate Similarity NPC80590
0.8125 Intermediate Similarity NPC2783
0.8125 Intermediate Similarity NPC324063
0.8125 Intermediate Similarity NPC70661
0.8125 Intermediate Similarity NPC475007
0.8125 Intermediate Similarity NPC187545
0.8125 Intermediate Similarity NPC322159
0.8125 Intermediate Similarity NPC155011
0.8125 Intermediate Similarity NPC73038
0.8108 Intermediate Similarity NPC39362
0.8101 Intermediate Similarity NPC165064
0.8082 Intermediate Similarity NPC177826
0.8077 Intermediate Similarity NPC123880
0.8077 Intermediate Similarity NPC471159
0.8052 Intermediate Similarity NPC2482
0.8052 Intermediate Similarity NPC477057
0.8052 Intermediate Similarity NPC37038
0.8052 Intermediate Similarity NPC164999
0.8026 Intermediate Similarity NPC198240
0.8026 Intermediate Similarity NPC179028
0.8025 Intermediate Similarity NPC264005
0.8025 Intermediate Similarity NPC142415
0.8025 Intermediate Similarity NPC130577
0.8025 Intermediate Similarity NPC134197
0.8025 Intermediate Similarity NPC96496
0.8025 Intermediate Similarity NPC158141
0.8025 Intermediate Similarity NPC68160
0.8025 Intermediate Similarity NPC51700
0.8025 Intermediate Similarity NPC242468
0.8025 Intermediate Similarity NPC269360
0.8025 Intermediate Similarity NPC477926
0.8025 Intermediate Similarity NPC171203
0.8025 Intermediate Similarity NPC474684
0.8025 Intermediate Similarity NPC307426
0.8025 Intermediate Similarity NPC88716
0.8025 Intermediate Similarity NPC18064
0.8025 Intermediate Similarity NPC173089
0.8025 Intermediate Similarity NPC33768
0.8025 Intermediate Similarity NPC71507
0.8025 Intermediate Similarity NPC293564
0.8025 Intermediate Similarity NPC98442
0.8025 Intermediate Similarity NPC142361
0.8025 Intermediate Similarity NPC102683
0.8 Intermediate Similarity NPC106416
0.8 Intermediate Similarity NPC104806
0.8 Intermediate Similarity NPC309399
0.8 Intermediate Similarity NPC86316
0.7975 Intermediate Similarity NPC200752
0.7975 Intermediate Similarity NPC243347
0.7973 Intermediate Similarity NPC301065
0.7949 Intermediate Similarity NPC103754
0.7949 Intermediate Similarity NPC3915
0.7949 Intermediate Similarity NPC263272
0.7949 Intermediate Similarity NPC142244
0.7949 Intermediate Similarity NPC147066
0.7949 Intermediate Similarity NPC274050
0.7949 Intermediate Similarity NPC267691
0.7949 Intermediate Similarity NPC162632
0.7949 Intermediate Similarity NPC278459
0.7949 Intermediate Similarity NPC474484
0.7949 Intermediate Similarity NPC232625
0.7949 Intermediate Similarity NPC471898
0.7949 Intermediate Similarity NPC221647
0.7927 Intermediate Similarity NPC182797
0.7927 Intermediate Similarity NPC16377
0.7927 Intermediate Similarity NPC52169
0.7927 Intermediate Similarity NPC474511
0.7927 Intermediate Similarity NPC104560
0.7927 Intermediate Similarity NPC181225
0.7927 Intermediate Similarity NPC17733
0.7927 Intermediate Similarity NPC211162
0.7927 Intermediate Similarity NPC255176
0.7927 Intermediate Similarity NPC40552
0.7927 Intermediate Similarity NPC474512
0.7927 Intermediate Similarity NPC474719
0.7927 Intermediate Similarity NPC146937
0.7927 Intermediate Similarity NPC473242
0.7927 Intermediate Similarity NPC183374
0.7927 Intermediate Similarity NPC246708
0.7927 Intermediate Similarity NPC290690
0.7927 Intermediate Similarity NPC1753
0.7927 Intermediate Similarity NPC471900
0.7927 Intermediate Similarity NPC470629
0.7922 Intermediate Similarity NPC192999
0.7922 Intermediate Similarity NPC471475
0.7922 Intermediate Similarity NPC477371
0.7922 Intermediate Similarity NPC476812
0.7922 Intermediate Similarity NPC476438
0.7917 Intermediate Similarity NPC476734
0.7917 Intermediate Similarity NPC252032
0.7917 Intermediate Similarity NPC319671
0.7917 Intermediate Similarity NPC469941
0.7901 Intermediate Similarity NPC28252
0.7901 Intermediate Similarity NPC82979
0.7901 Intermediate Similarity NPC72638
0.7901 Intermediate Similarity NPC185638
0.7901 Intermediate Similarity NPC55309
0.7901 Intermediate Similarity NPC472505
0.7895 Intermediate Similarity NPC476811
0.7895 Intermediate Similarity NPC472746
0.7875 Intermediate Similarity NPC130966
0.7875 Intermediate Similarity NPC97505
0.7875 Intermediate Similarity NPC171789
0.7867 Intermediate Similarity NPC476795
0.7867 Intermediate Similarity NPC201027
0.7848 Intermediate Similarity NPC310989
0.7848 Intermediate Similarity NPC476984
0.7848 Intermediate Similarity NPC48362

  Chemically structural similarity: II. Similar Clinical/Approved Drugs

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules.

●  The left chart: Distribution of similarity level between NPC91369 and all drugs/candidates.
●  The right table: Most similar clinical/approved drugs (Tc>=0.56 or Top200).

Similarity Score Similarity Level Drug ID Developmental Stage
0.8228 Intermediate Similarity NPD7520 Clinical (unspecified phase)
0.775 Intermediate Similarity NPD4788 Approved
0.7654 Intermediate Similarity NPD4786 Approved
0.7647 Intermediate Similarity NPD7515 Phase 2
0.7625 Intermediate Similarity NPD3667 Approved
0.75 Intermediate Similarity NPD6113 Clinical (unspecified phase)
0.7442 Intermediate Similarity NPD8034 Phase 2
0.7442 Intermediate Similarity NPD8035 Phase 2
0.7439 Intermediate Similarity NPD3665 Phase 1
0.7439 Intermediate Similarity NPD3666 Approved
0.7439 Intermediate Similarity NPD3133 Approved
0.7407 Intermediate Similarity NPD4752 Clinical (unspecified phase)
0.7361 Intermediate Similarity NPD3171 Clinical (unspecified phase)
0.7356 Intermediate Similarity NPD6399 Phase 3
0.7308 Intermediate Similarity NPD6117 Approved
0.7273 Intermediate Similarity NPD7748 Approved
0.7262 Intermediate Similarity NPD6409 Approved
0.7262 Intermediate Similarity NPD3618 Phase 1
0.7262 Intermediate Similarity NPD5330 Approved
0.7262 Intermediate Similarity NPD6684 Approved
0.7262 Intermediate Similarity NPD7334 Approved
0.7262 Intermediate Similarity NPD7521 Approved
0.7262 Intermediate Similarity NPD7146 Approved
0.726 Intermediate Similarity NPD4224 Phase 2
0.7222 Intermediate Similarity NPD6083 Phase 2
0.7222 Intermediate Similarity NPD6084 Phase 2
0.7215 Intermediate Similarity NPD6116 Phase 1
0.7209 Intermediate Similarity NPD5328 Approved
0.716 Intermediate Similarity NPD4695 Discontinued
0.7125 Intermediate Similarity NPD6114 Approved
0.7125 Intermediate Similarity NPD6118 Approved
0.7125 Intermediate Similarity NPD6115 Approved
0.7125 Intermediate Similarity NPD6697 Approved
0.7105 Intermediate Similarity NPD4245 Approved
0.7105 Intermediate Similarity NPD4789 Approved
0.7105 Intermediate Similarity NPD4244 Approved
0.7093 Intermediate Similarity NPD7513 Clinical (unspecified phase)
0.7093 Intermediate Similarity NPD6672 Approved
0.7093 Intermediate Similarity NPD5737 Approved
0.7093 Intermediate Similarity NPD6903 Approved
0.7059 Intermediate Similarity NPD5279 Phase 3
0.7045 Intermediate Similarity NPD6411 Approved
0.7045 Intermediate Similarity NPD6079 Approved
0.7033 Intermediate Similarity NPD7902 Approved
0.7013 Intermediate Similarity NPD6081 Approved
0.7013 Intermediate Similarity NPD4808 Clinical (unspecified phase)
0.7013 Intermediate Similarity NPD4809 Clinical (unspecified phase)
0.7011 Intermediate Similarity NPD4753 Phase 2
0.7011 Intermediate Similarity NPD7285 Clinical (unspecified phase)
0.6988 Remote Similarity NPD4223 Phase 3
0.6988 Remote Similarity NPD4221 Approved
0.6974 Remote Similarity NPD3700 Clinical (unspecified phase)
0.6974 Remote Similarity NPD3699 Clinical (unspecified phase)
0.6974 Remote Similarity NPD3698 Phase 2
0.6962 Remote Similarity NPD3702 Approved
0.6941 Remote Similarity NPD5329 Approved
0.6914 Remote Similarity NPD3617 Approved
0.6914 Remote Similarity NPD5784 Clinical (unspecified phase)
0.6912 Remote Similarity NPD3729 Clinical (unspecified phase)
0.686 Remote Similarity NPD6098 Approved
0.6835 Remote Similarity NPD6926 Approved
0.6835 Remote Similarity NPD6924 Approved
0.6824 Remote Similarity NPD4197 Approved
0.6824 Remote Similarity NPD3668 Phase 3
0.6818 Remote Similarity NPD6101 Approved
0.6818 Remote Similarity NPD5764 Clinical (unspecified phase)
0.6813 Remote Similarity NPD5695 Phase 3
0.6795 Remote Similarity NPD5777 Approved
0.6778 Remote Similarity NPD4202 Approved
0.6774 Remote Similarity NPD5696 Approved
0.6774 Remote Similarity NPD7638 Approved
0.675 Remote Similarity NPD7339 Approved
0.675 Remote Similarity NPD6942 Approved
0.675 Remote Similarity NPD8039 Approved
0.6703 Remote Similarity NPD7900 Approved
0.6703 Remote Similarity NPD7901 Clinical (unspecified phase)
0.6702 Remote Similarity NPD7639 Approved
0.6702 Remote Similarity NPD7640 Approved
0.6701 Remote Similarity NPD6675 Approved
0.6701 Remote Similarity NPD7128 Approved
0.6701 Remote Similarity NPD6402 Approved
0.6701 Remote Similarity NPD5739 Approved
0.6667 Remote Similarity NPD4690 Approved
0.6667 Remote Similarity NPD3198 Approved
0.6667 Remote Similarity NPD5205 Approved
0.6667 Remote Similarity NPD3701 Clinical (unspecified phase)
0.6667 Remote Similarity NPD4138 Approved
0.6667 Remote Similarity NPD5284 Approved
0.6667 Remote Similarity NPD4623 Approved
0.6667 Remote Similarity NPD4688 Approved
0.6667 Remote Similarity NPD6933 Approved
0.6667 Remote Similarity NPD4519 Discontinued
0.6667 Remote Similarity NPD4689 Approved
0.6667 Remote Similarity NPD4693 Phase 3
0.6667 Remote Similarity NPD5281 Approved
0.663 Remote Similarity NPD4629 Approved
0.663 Remote Similarity NPD5210 Approved
0.6629 Remote Similarity NPD6673 Approved
0.6629 Remote Similarity NPD6904 Approved
0.6629 Remote Similarity NPD6080 Approved
0.6627 Remote Similarity NPD7645 Phase 2
0.6623 Remote Similarity NPD5360 Phase 3
0.6623 Remote Similarity NPD5361 Clinical (unspecified phase)
0.6593 Remote Similarity NPD5779 Approved
0.6593 Remote Similarity NPD5778 Approved
0.6591 Remote Similarity NPD3573 Approved
0.6566 Remote Similarity NPD6881 Approved
0.6566 Remote Similarity NPD7320 Approved
0.6566 Remote Similarity NPD6899 Approved
0.6566 Remote Similarity NPD6686 Approved
0.6559 Remote Similarity NPD4697 Phase 3
0.6559 Remote Similarity NPD7614 Phase 1
0.6559 Remote Similarity NPD5220 Clinical (unspecified phase)
0.6559 Remote Similarity NPD5221 Approved
0.6559 Remote Similarity NPD5222 Approved
0.6548 Remote Similarity NPD5368 Approved
0.6548 Remote Similarity NPD7525 Registered
0.6543 Remote Similarity NPD3703 Phase 2
0.6538 Remote Similarity NPD6922 Approved
0.6538 Remote Similarity NPD6923 Approved
0.6517 Remote Similarity NPD5208 Approved
0.6512 Remote Similarity NPD5362 Discontinued
0.65 Remote Similarity NPD6373 Approved
0.65 Remote Similarity NPD6372 Approved
0.6489 Remote Similarity NPD5173 Approved
0.6489 Remote Similarity NPD4755 Approved
0.6484 Remote Similarity NPD7637 Suspended
0.6477 Remote Similarity NPD3574 Clinical (unspecified phase)
0.6477 Remote Similarity NPD5690 Phase 2
0.6477 Remote Similarity NPD5280 Approved
0.6477 Remote Similarity NPD4694 Approved
0.6471 Remote Similarity NPD4139 Approved
0.6471 Remote Similarity NPD5369 Approved
0.6471 Remote Similarity NPD4692 Approved
0.6465 Remote Similarity NPD5701 Approved
0.6465 Remote Similarity NPD5697 Approved
0.6462 Remote Similarity NPD634 Phase 3
0.6456 Remote Similarity NPD7143 Approved
0.6456 Remote Similarity NPD7144 Approved
0.6452 Remote Similarity NPD6356 Clinical (unspecified phase)
0.6447 Remote Similarity NPD7341 Phase 2
0.6436 Remote Similarity NPD6883 Approved
0.6436 Remote Similarity NPD7102 Approved
0.6436 Remote Similarity NPD7290 Approved
0.6429 Remote Similarity NPD3196 Approved
0.6429 Remote Similarity NPD615 Clinical (unspecified phase)
0.6429 Remote Similarity NPD6929 Approved
0.6429 Remote Similarity NPD4266 Approved
0.6429 Remote Similarity NPD3194 Approved
0.6429 Remote Similarity NPD3195 Phase 2
0.6421 Remote Similarity NPD4225 Approved
0.64 Remote Similarity NPD6011 Approved
0.6395 Remote Similarity NPD4269 Approved
0.6395 Remote Similarity NPD4270 Approved
0.6395 Remote Similarity NPD6435 Approved
0.6377 Remote Similarity NPD3186 Phase 1
0.6375 Remote Similarity NPD7151 Approved
0.6375 Remote Similarity NPD4243 Approved
0.6375 Remote Similarity NPD7150 Approved
0.6375 Remote Similarity NPD7152 Approved
0.6373 Remote Similarity NPD6401 Clinical (unspecified phase)
0.6373 Remote Similarity NPD6869 Approved
0.6373 Remote Similarity NPD6617 Approved
0.6373 Remote Similarity NPD6649 Approved
0.6373 Remote Similarity NPD6847 Approved
0.6373 Remote Similarity NPD6650 Approved
0.6373 Remote Similarity NPD8130 Phase 1
0.6364 Remote Similarity NPD7331 Phase 2
0.6354 Remote Similarity NPD5285 Approved
0.6354 Remote Similarity NPD6404 Discontinued
0.6354 Remote Similarity NPD5286 Approved
0.6354 Remote Similarity NPD4700 Approved
0.6354 Remote Similarity NPD4696 Approved
0.6353 Remote Similarity NPD6931 Approved
0.6353 Remote Similarity NPD7509 Discontinued
0.6353 Remote Similarity NPD6930 Phase 2
0.6337 Remote Similarity NPD6014 Approved
0.6337 Remote Similarity NPD6012 Approved
0.6337 Remote Similarity NPD6013 Approved
0.6329 Remote Similarity NPD3725 Approved
0.6329 Remote Similarity NPD4137 Phase 3
0.6329 Remote Similarity NPD3726 Approved
0.6322 Remote Similarity NPD7154 Phase 3
0.6316 Remote Similarity NPD7909 Approved
0.6316 Remote Similarity NPD3197 Phase 1
0.6311 Remote Similarity NPD6882 Approved
0.6311 Remote Similarity NPD8297 Approved
0.631 Remote Similarity NPD3671 Phase 1
0.6304 Remote Similarity NPD5693 Phase 1
0.6304 Remote Similarity NPD6050 Approved
0.63 Remote Similarity NPD6412 Phase 2
0.6289 Remote Similarity NPD5223 Approved
0.6286 Remote Similarity NPD3172 Approved
0.6279 Remote Similarity NPD857 Phase 3
0.6269 Remote Similarity NPD622 Approved
0.625 Remote Similarity NPD4691 Approved
0.625 Remote Similarity NPD8133 Approved
0.625 Remote Similarity NPD4747 Approved
0.6238 Remote Similarity NPD5345 Clinical (unspecified phase)
0.6235 Remote Similarity NPD4195 Approved

  Bioactivity similarity: Similar Natural Products in NPASS

Bioactivity similarity was calculated based on bioactivity descriptors of compounds. The bioactivity descriptors were calculated by a recently developed AI algorithm Chemical Checker (CC) [Nature Biotechnology, 38:1087–1096, 2020; Nature Communications, 12:3932, 2021], which evaluated bioactivity similarities at five levels:
A: chemistry similarity;
B: biological targets similarity;
C: networks similarity;
D: cell-based bioactivity similarity;
E: similarity based on clinical data.

Those 5 categories of CC bioactivity descriptors were calculated and then subjected to manifold projection using UMAP algorithm, to project all NPs on a 2-Dimensional space. The current NP was highlighted with a small circle in the 2-D map. Below figures: left-to-right, A-to-E.

A: chemistry similarity
B: biological targets similarity
C: networks similarity
D: cell-based bioactivity similarity
E: similarity based on clinical data