Structure

Physi-Chem Properties

Molecular Weight:  1708.69
Volume:  1611.471
LogP:  1.259
LogD:  1.283
LogS:  -0.927
# Rotatable Bonds:  40
TPSA:  616.1
# H-Bond Aceptor:  39
# H-Bond Donor:  19
# Rings:  6
# Heavy Atoms:  41

MedChem Properties

QED Drug-Likeness Score:  0.012
Synthetic Accessibility Score:  7.639
Fsp3:  0.587
Lipinski Rule-of-5:  Rejected
Pfizer Rule:  Accepted
GSK Rule:  Rejected
BMS Rule:  1
Golden Triangle Rule:  Rejected
Chelating Alert:  0
PAINS Alert:  0

ADMET Properties (ADMETlab2.0)

ADMET: Absorption

Caco-2 Permeability:  -5.168
MDCK Permeability:  0.00047793122939765453
Pgp-inhibitor:  0.002
Pgp-substrate:  1.0
Human Intestinal Absorption (HIA):  1.0
20% Bioavailability (F20%):  0.999
30% Bioavailability (F30%):  1.0

ADMET: Distribution

Blood-Brain-Barrier Penetration (BBB):  0.989
Plasma Protein Binding (PPB):  45.16216278076172%
Volume Distribution (VD):  0.667
Pgp-substrate:  41.907875061035156%

ADMET: Metabolism

CYP1A2-inhibitor:  0.0
CYP1A2-substrate:  0.0
CYP2C19-inhibitor:  0.002
CYP2C19-substrate:  0.014
CYP2C9-inhibitor:  0.022
CYP2C9-substrate:  0.105
CYP2D6-inhibitor:  0.0
CYP2D6-substrate:  0.02
CYP3A4-inhibitor:  0.022
CYP3A4-substrate:  0.0

ADMET: Excretion

Clearance (CL):  0.301
Half-life (T1/2):  0.628

ADMET: Toxicity

hERG Blockers:  0.0
Human Hepatotoxicity (H-HT):  1.0
Drug-inuced Liver Injury (DILI):  0.953
AMES Toxicity:  0.0
Rat Oral Acute Toxicity:  0.014
Maximum Recommended Daily Dose:  0.775
Skin Sensitization:  0.544
Carcinogencity:  0.029
Eye Corrosion:  0.003
Eye Irritation:  0.003
Respiratory Toxicity:  0.967

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General Info & Identifiers & Properties  
Structure MOL file  
Source Organisms  
Biological Activities  
Similar NPs/Drugs  

  Natural Product: NPC242872

Natural Product ID:  NPC242872
Common Name*:   Polydiscamide B
IUPAC Name:   2-[(3R,6S,9S,10R,13R,16S)-6-(3-amino-3-oxopropyl)-9-[[(2S)-2-[[(2S)-2-[[(2R)-2-[[(2S)-2-[[(2R)-2-[[(2S)-1-[(2S)-3-(4-bromophenyl)-2-[[(2R)-2-formamidopropanoyl]amino]propanoyl]pyrrolidine-2-carbonyl]amino]-3,3-dimethylbutanoyl]amino]-3,3-dimethylpentanoyl]amino]-3-(1H-indol-3-yl)propanoyl]amino]-5-(diaminomethylideneamino)pentanoyl]amino]-3-sulfopropanoyl]amino]-7,10-dimethyl-2,5,8,12,15-pentaoxo-3-propan-2-yl-11-oxa-1,4,7,14-tetrazabicyclo[14.3.0]nonadecan-13-yl]acetic acid
Synonyms:  
Standard InCHIKey:  SVMYZZWGWZMWMH-SRZFOLISSA-N
Standard InCHI:  InChI=1S/C75H109BrN18O21S/c1-12-75(9,10)59(91-67(106)58(74(6,7)8)90-66(105)53-22-16-30-93(53)69(108)48(85-60(99)39(4)82-37-95)32-41-23-25-43(76)26-24-41)68(107)84-47(33-42-35-81-45-19-14-13-18-44(42)45)62(101)83-46(20-15-29-80-73(78)79)61(100)87-50(36-116(112,113)114)63(102)89-57-40(5)115-72(111)49(34-55(97)98)86-65(104)52-21-17-31-94(52)71(110)56(38(2)3)88-64(103)51(27-28-54(77)96)92(11)70(57)109/h13-14,18-19,23-26,35,37-40,46-53,56-59,81H,12,15-17,20-22,27-34,36H2,1-11H3,(H2,77,96)(H,82,95)(H,83,101)(H,84,107)(H,85,99)(H,86,104)(H,87,100)(H,88,103)(H,89,102)(H,90,105)(H,91,106)(H,97,98)(H4,78,79,80)(H,112,113,114)/t39-,40-,46+,47-,48+,49-,50-,51+,52+,53+,56-,57+,58+,59-/m1/s1
SMILES:  CCC(C)(C)[C@@H](C(=N[C@H](Cc1c[nH]c2ccccc12)C(=N[C@@H](CCCNC(=N)N)C(=N[C@H](CS(=O)(=O)O)C(=N[C@H]1[C@@H](C)OC(=O)[C@@H](CC(=O)O)N=C([C@@H]2CCCN2C(=O)[C@@H](C(C)C)N=C([C@H](CCC(=N)O)N(C)C1=O)O)O)O)O)O)O)N=C([C@@H](C(C)(C)C)N=C([C@@H]1CCCN1C(=O)[C@H](Cc1ccc(cc1)Br)N=C([C@@H](C)N=CO)O)O)O
Synthetic Gene Cluster:   n.a.
ChEMBL Identifier:   CHEMBL403900
PubChem CID:   25077700
Chemical Classification**:  
  • CHEMONTID:0000000 [Organic compounds]
    • [CHEMONTID:0000264] Organic acids and derivatives
      • [CHEMONTID:0001813] Peptidomimetics
        • [CHEMONTID:0001961] Depsipeptides
          • [CHEMONTID:0001994] Cyclic depsipeptides

*Note: the InCHIKey will be temporarily assigned as the "Common Name" if no IUPAC name or alternative short name is available.
**Note: the Chemical Classification was calculated by NPClassifier Version 1.5. Reference: PMID:34662515.

  Species Source

Organism ID Organism Name Taxonomy Level Family SuperKingdom Isolation Part Collection Location Collection Time Reference
NPO32608 ircinia sp. Species Irciniidae Eukaryota n.a. n.a. n.a. PMID[11277743]
NPO32608 ircinia sp. Species Irciniidae Eukaryota n.a. n.a. n.a. PMID[11908961]
NPO32608 ircinia sp. Species Irciniidae Eukaryota n.a. Okinawan n.a. PMID[12608859]
NPO32608 ircinia sp. Species Irciniidae Eukaryota n.a. n.a. n.a. PMID[18163586]
NPO32608 ircinia sp. Species Irciniidae Eukaryota n.a. n.a. n.a. PMID[7769397]
NPO32608 ircinia sp. Species Irciniidae Eukaryota n.a. Okinawan n.a. PMID[7853011]

☑ Note for Reference:
In addition to directly collecting NP source organism data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated them from below databases:
UNPD: Universal Natural Products Database [PMID: 23638153].
StreptomeDB: a database of streptomycetes natural products [PMID: 33051671].
TM-MC: a database of medicinal materials and chemical compounds in Northeast Asian traditional medicine [PMID: 26156871].
TCM@Taiwan: a Traditional Chinese Medicine database [PMID: 21253603].
TCMID: a Traditional Chinese Medicine database [PMID: 29106634].
TCMSP: The traditional Chinese medicine systems pharmacology database and analysis platform [PMID: 24735618].
HerDing: a herb recommendation system to treat diseases using genes and chemicals [PMID: 26980517].
MetaboLights: a metabolomics database [PMID: 27010336].
FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].

  NP Quantity Composition/Concentration

Organism ID NP ID Organism Material Preparation Organism Part NP Quantity (Standard) NP Quantity (Minimum) NP Quantity (Maximum) Quantity Unit Reference

☑ Note for Reference:
In addition to directly collecting NP quantitative data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated NP quantitative records for specific NP domains (e.g., NPS from foods or herbs) from domain-specific databases. These databases include:
DUKE: Dr. Duke's Phytochemical and Ethnobotanical Databases.
PHENOL EXPLORER: is the first comprehensive database on polyphenol content in foods [PMID: 24103452], its homepage can be accessed at here.
FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].

  Biological Activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference
NPT2 Others Unspecified EC50 = 1260.0 nM PMID[468158]

☑ Note for Activity Records:
☉ The quantitative biological activities were primarily integrated from ChEMBL (Version-30) database and were also directly collected from PubMed literature. PubMed PMID was provided as the reference link for each activity record.

  Chemically structural similarity: I. Similar Active Natural Products in NPASS

Top-200 similar NPs were calculated against the active-NP-set (includes 4,3285 NPs with experimentally-derived bioactivity available in NPASS)

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules. Tc lies between [0, 1] where '1' indicates the highest similarity. What is Tanimoto coefficient

●  The left chart: Distribution of similarity level between NPC242872 and all remaining natural products in the NPASS database.
●  The right table: Most similar natural products (Tc>=0.56 or Top200).

Similarity Score Similarity Level Natural Product ID
1.0 High Similarity NPC263117
1.0 High Similarity NPC125181
0.9706 High Similarity NPC321939
0.8101 Intermediate Similarity NPC64216
0.8074 Intermediate Similarity NPC478029
0.8026 Intermediate Similarity NPC54744
0.8017 Intermediate Similarity NPC320968
0.7992 Intermediate Similarity NPC478028
0.7871 Intermediate Similarity NPC477107
0.7871 Intermediate Similarity NPC477109
0.7871 Intermediate Similarity NPC477108
0.7854 Intermediate Similarity NPC478158
0.7854 Intermediate Similarity NPC162860
0.7831 Intermediate Similarity NPC201831
0.7831 Intermediate Similarity NPC17487
0.783 Intermediate Similarity NPC75634
0.7815 Intermediate Similarity NPC281049
0.7778 Intermediate Similarity NPC107077
0.7778 Intermediate Similarity NPC223791
0.7768 Intermediate Similarity NPC54420
0.7759 Intermediate Similarity NPC473376
0.7749 Intermediate Similarity NPC155143
0.7724 Intermediate Similarity NPC165743
0.7724 Intermediate Similarity NPC89987
0.7706 Intermediate Similarity NPC475506
0.7692 Intermediate Similarity NPC63279
0.7689 Intermediate Similarity NPC478157
0.7683 Intermediate Similarity NPC474877
0.7683 Intermediate Similarity NPC475859
0.7683 Intermediate Similarity NPC475969
0.7672 Intermediate Similarity NPC476874
0.7661 Intermediate Similarity NPC297642
0.7642 Intermediate Similarity NPC477175
0.7642 Intermediate Similarity NPC477176
0.7642 Intermediate Similarity NPC470729
0.7642 Intermediate Similarity NPC470730
0.7623 Intermediate Similarity NPC474196
0.7611 Intermediate Similarity NPC477177
0.7605 Intermediate Similarity NPC31385
0.7605 Intermediate Similarity NPC75726
0.7605 Intermediate Similarity NPC110602
0.7576 Intermediate Similarity NPC473640
0.7547 Intermediate Similarity NPC478013
0.7543 Intermediate Similarity NPC293917
0.7543 Intermediate Similarity NPC100321
0.7531 Intermediate Similarity NPC474195
0.7521 Intermediate Similarity NPC475736
0.751 Intermediate Similarity NPC477630
0.751 Intermediate Similarity NPC63031
0.751 Intermediate Similarity NPC477635
0.7452 Intermediate Similarity NPC153400
0.7445 Intermediate Similarity NPC477633
0.7434 Intermediate Similarity NPC314056
0.743 Intermediate Similarity NPC69843
0.7425 Intermediate Similarity NPC171317
0.7423 Intermediate Similarity NPC314882
0.74 Intermediate Similarity NPC14288
0.7395 Intermediate Similarity NPC323927
0.7377 Intermediate Similarity NPC477714
0.7371 Intermediate Similarity NPC321592
0.7371 Intermediate Similarity NPC54803
0.7366 Intermediate Similarity NPC470732
0.7366 Intermediate Similarity NPC470731
0.736 Intermediate Similarity NPC95240
0.736 Intermediate Similarity NPC223409
0.7336 Intermediate Similarity NPC477114
0.732 Intermediate Similarity NPC100547
0.7312 Intermediate Similarity NPC245055
0.7309 Intermediate Similarity NPC24370
0.7309 Intermediate Similarity NPC319232
0.7291 Intermediate Similarity NPC322135
0.728 Intermediate Similarity NPC34580
0.728 Intermediate Similarity NPC304307
0.728 Intermediate Similarity NPC118559
0.728 Intermediate Similarity NPC124920
0.728 Intermediate Similarity NPC261251
0.7265 Intermediate Similarity NPC477715
0.7245 Intermediate Similarity NPC478006
0.7244 Intermediate Similarity NPC325976
0.7243 Intermediate Similarity NPC207020
0.7243 Intermediate Similarity NPC478011
0.7243 Intermediate Similarity NPC478012
0.7241 Intermediate Similarity NPC243716
0.724 Intermediate Similarity NPC214142
0.7229 Intermediate Similarity NPC213629
0.7227 Intermediate Similarity NPC193761
0.7216 Intermediate Similarity NPC314176
0.7213 Intermediate Similarity NPC229348
0.7205 Intermediate Similarity NPC284888
0.7205 Intermediate Similarity NPC323752
0.72 Intermediate Similarity NPC125597
0.7195 Intermediate Similarity NPC238945
0.7176 Intermediate Similarity NPC33064
0.7154 Intermediate Similarity NPC326363
0.7153 Intermediate Similarity NPC477634
0.7148 Intermediate Similarity NPC315467
0.7137 Intermediate Similarity NPC220852
0.7131 Intermediate Similarity NPC474389
0.7121 Intermediate Similarity NPC28945
0.7115 Intermediate Similarity NPC56109
0.7115 Intermediate Similarity NPC191382
0.7093 Intermediate Similarity NPC82472
0.7089 Intermediate Similarity NPC262898
0.708 Intermediate Similarity NPC473317
0.7069 Intermediate Similarity NPC94752
0.7064 Intermediate Similarity NPC473342
0.7064 Intermediate Similarity NPC477167
0.7063 Intermediate Similarity NPC19170
0.7059 Intermediate Similarity NPC478010
0.7059 Intermediate Similarity NPC478009
0.7057 Intermediate Similarity NPC471536
0.7054 Intermediate Similarity NPC285343
0.7052 Intermediate Similarity NPC155444
0.7046 Intermediate Similarity NPC179701
0.7009 Intermediate Similarity NPC321708
0.6996 Remote Similarity NPC277350
0.698 Remote Similarity NPC297862
0.6966 Remote Similarity NPC17059
0.6955 Remote Similarity NPC14812
0.6948 Remote Similarity NPC471192
0.6929 Remote Similarity NPC235885
0.692 Remote Similarity NPC79386
0.6917 Remote Similarity NPC327095
0.6917 Remote Similarity NPC312942
0.6917 Remote Similarity NPC253987
0.6911 Remote Similarity NPC469743
0.6908 Remote Similarity NPC313640
0.6895 Remote Similarity NPC6865
0.6895 Remote Similarity NPC153980
0.6891 Remote Similarity NPC181081
0.689 Remote Similarity NPC40455
0.688 Remote Similarity NPC74969
0.6878 Remote Similarity NPC473763
0.6878 Remote Similarity NPC117244
0.6877 Remote Similarity NPC2395
0.6877 Remote Similarity NPC474896
0.6875 Remote Similarity NPC476491
0.6873 Remote Similarity NPC70155
0.686 Remote Similarity NPC205254
0.686 Remote Similarity NPC214428
0.686 Remote Similarity NPC303820
0.686 Remote Similarity NPC23420
0.686 Remote Similarity NPC106771
0.686 Remote Similarity NPC470497
0.6855 Remote Similarity NPC72956
0.6855 Remote Similarity NPC54981
0.6851 Remote Similarity NPC235684
0.685 Remote Similarity NPC31097
0.6849 Remote Similarity NPC477166
0.6849 Remote Similarity NPC304187
0.6848 Remote Similarity NPC117980
0.6838 Remote Similarity NPC272174
0.6838 Remote Similarity NPC228835
0.6836 Remote Similarity NPC472762
0.6831 Remote Similarity NPC475935
0.6831 Remote Similarity NPC94211
0.6831 Remote Similarity NPC300183
0.6831 Remote Similarity NPC52909
0.6827 Remote Similarity NPC471193
0.6827 Remote Similarity NPC471194
0.6824 Remote Similarity NPC266192
0.6824 Remote Similarity NPC476817
0.682 Remote Similarity NPC474180
0.682 Remote Similarity NPC188821
0.6813 Remote Similarity NPC204491
0.6813 Remote Similarity NPC203614
0.68 Remote Similarity NPC267965
0.6792 Remote Similarity NPC294693
0.6783 Remote Similarity NPC156003
0.6774 Remote Similarity NPC271862
0.6773 Remote Similarity NPC474412
0.677 Remote Similarity NPC267926
0.676 Remote Similarity NPC151976
0.676 Remote Similarity NPC87856
0.6758 Remote Similarity NPC147446
0.6756 Remote Similarity NPC272549
0.6754 Remote Similarity NPC66642
0.675 Remote Similarity NPC88315
0.6749 Remote Similarity NPC268744
0.6749 Remote Similarity NPC201266
0.6749 Remote Similarity NPC220797
0.6749 Remote Similarity NPC474318
0.6749 Remote Similarity NPC153123
0.6749 Remote Similarity NPC475914
0.6747 Remote Similarity NPC234999
0.6746 Remote Similarity NPC132211
0.6744 Remote Similarity NPC57690
0.6744 Remote Similarity NPC475258
0.6738 Remote Similarity NPC283219
0.6738 Remote Similarity NPC213468
0.6738 Remote Similarity NPC126709
0.6738 Remote Similarity NPC248041
0.6734 Remote Similarity NPC71238
0.6734 Remote Similarity NPC258062
0.6734 Remote Similarity NPC476525
0.6734 Remote Similarity NPC476524
0.6734 Remote Similarity NPC127677
0.6731 Remote Similarity NPC290529
0.6724 Remote Similarity NPC267885
0.6721 Remote Similarity NPC13456

  Chemically structural similarity: II. Similar Clinical/Approved Drugs

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules.

●  The left chart: Distribution of similarity level between NPC242872 and all drugs/candidates.
●  The right table: Most similar clinical/approved drugs (Tc>=0.56 or Top200).

Similarity Score Similarity Level Drug ID Developmental Stage
0.8069 Intermediate Similarity NPD7970 Approved
0.8069 Intermediate Similarity NPD7971 Clinical (unspecified phase)
0.7745 Intermediate Similarity NPD7809 Clinical (unspecified phase)
0.7692 Intermediate Similarity NPD8493 Clinical (unspecified phase)
0.7625 Intermediate Similarity NPD8406 Clinical (unspecified phase)
0.7543 Intermediate Similarity NPD7621 Clinical (unspecified phase)
0.7532 Intermediate Similarity NPD8272 Phase 2
0.7449 Intermediate Similarity NPD7711 Discontinued
0.7417 Intermediate Similarity NPD8013 Clinical (unspecified phase)
0.7415 Intermediate Similarity NPD8072 Approved
0.73 Intermediate Similarity NPD8073 Approved
0.7273 Intermediate Similarity NPD7470 Discontinued
0.7231 Intermediate Similarity NPD7825 Clinical (unspecified phase)
0.7222 Intermediate Similarity NPD7824 Approved
0.7205 Intermediate Similarity NPD7791 Approved
0.7205 Intermediate Similarity NPD7790 Approved
0.7205 Intermediate Similarity NPD7951 Approved
0.7205 Intermediate Similarity NPD7950 Approved
0.7205 Intermediate Similarity NPD7953 Approved
0.7205 Intermediate Similarity NPD7952 Approved
0.7205 Intermediate Similarity NPD7789 Approved
0.7185 Intermediate Similarity NPD7903 Clinical (unspecified phase)
0.7184 Intermediate Similarity NPD8112 Clinical (unspecified phase)
0.7143 Intermediate Similarity NPD7730 Approved
0.7143 Intermediate Similarity NPD7731 Approved
0.7115 Intermediate Similarity NPD7781 Approved
0.7115 Intermediate Similarity NPD7780 Approved
0.7102 Intermediate Similarity NPD7594 Clinical (unspecified phase)
0.7063 Intermediate Similarity NPD7271 Approved
0.7037 Intermediate Similarity NPD8322 Phase 2
0.7024 Intermediate Similarity NPD7716 Approved
0.7024 Intermediate Similarity NPD7717 Approved
0.7009 Intermediate Similarity NPD8110 Clinical (unspecified phase)
0.7004 Intermediate Similarity NPD7944 Discontinued
0.6996 Remote Similarity NPD7958 Clinical (unspecified phase)
0.6996 Remote Similarity NPD7957 Phase 1
0.6969 Remote Similarity NPD8075 Discontinued
0.6965 Remote Similarity NPD8119 Discontinued
0.6926 Remote Similarity NPD8372 Clinical (unspecified phase)
0.6895 Remote Similarity NPD8458 Clinical (unspecified phase)
0.6892 Remote Similarity NPD8405 Clinical (unspecified phase)
0.6885 Remote Similarity NPD8169 Discontinued
0.6883 Remote Similarity NPD7998 Clinical (unspecified phase)
0.6867 Remote Similarity NPD8488 Clinical (unspecified phase)
0.6867 Remote Similarity NPD5728 Clinical (unspecified phase)
0.6867 Remote Similarity NPD2095 Phase 2
0.6867 Remote Similarity NPD2092 Phase 2
0.6867 Remote Similarity NPD2094 Phase 2
0.6838 Remote Similarity NPD2096 Phase 2
0.6838 Remote Similarity NPD2091 Phase 2
0.6815 Remote Similarity NPD8261 Discontinued
0.6805 Remote Similarity NPD8375 Approved
0.6792 Remote Similarity NPD7618 Phase 3
0.6792 Remote Similarity NPD7619 Phase 3
0.6786 Remote Similarity NPD8256 Approved
0.6786 Remote Similarity NPD8257 Approved
0.6786 Remote Similarity NPD8258 Clinical (unspecified phase)
0.6786 Remote Similarity NPD8271 Discontinued
0.6763 Remote Similarity NPD7818 Clinical (unspecified phase)
0.6754 Remote Similarity NPD8371 Clinical (unspecified phase)
0.6719 Remote Similarity NPD8000 Clinical (unspecified phase)
0.6709 Remote Similarity NPD6595 Phase 3
0.6694 Remote Similarity NPD7817 Phase 1
0.6692 Remote Similarity NPD8374 Phase 3
0.6681 Remote Similarity NPD482 Approved
0.668 Remote Similarity NPD7712 Clinical (unspecified phase)
0.6667 Remote Similarity NPD7947 Clinical (unspecified phase)
0.6653 Remote Similarity NPD7001 Phase 3
0.6653 Remote Similarity NPD4862 Clinical (unspecified phase)
0.6652 Remote Similarity NPD749 Clinical (unspecified phase)
0.6627 Remote Similarity NPD8410 Clinical (unspecified phase)
0.6617 Remote Similarity NPD8291 Clinical (unspecified phase)
0.6613 Remote Similarity NPD5426 Phase 3
0.6601 Remote Similarity NPD8094 Discontinued
0.6591 Remote Similarity NPD8329 Phase 3
0.6588 Remote Similarity NPD5818 Discontinued
0.6585 Remote Similarity NPD4600 Approved
0.6585 Remote Similarity NPD4601 Approved
0.6585 Remote Similarity NPD5043 Discontinued
0.6574 Remote Similarity NPD4520 Approved
0.6569 Remote Similarity NPD8246 Approved
0.6569 Remote Similarity NPD8247 Approved
0.6567 Remote Similarity NPD750 Phase 2
0.6561 Remote Similarity NPD8093 Discontinued
0.656 Remote Similarity NPD6838 Clinical (unspecified phase)
0.6559 Remote Similarity NPD8284 Discontinued
0.6545 Remote Similarity NPD8255 Phase 2
0.6534 Remote Similarity NPD2510 Approved
0.6534 Remote Similarity NPD7981 Discontinued
0.6534 Remote Similarity NPD2509 Approved
0.6532 Remote Similarity NPD5721 Clinical (unspecified phase)
0.6532 Remote Similarity NPD8421 Discontinued
0.6531 Remote Similarity NPD8250 Phase 2
0.6531 Remote Similarity NPD6664 Approved
0.6525 Remote Similarity NPD8386 Phase 2
0.6523 Remote Similarity NPD8325 Phase 3
0.6523 Remote Similarity NPD8326 Phase 3
0.6523 Remote Similarity NPD8327 Clinical (unspecified phase)
0.6513 Remote Similarity NPD7603 Discontinued
0.6513 Remote Similarity NPD8289 Discontinued
0.6512 Remote Similarity NPD1996 Discontinued
0.6498 Remote Similarity NPD8464 Clinical (unspecified phase)
0.6494 Remote Similarity NPD7834 Approved
0.6486 Remote Similarity NPD8484 Phase 2
0.6481 Remote Similarity NPD4184 Clinical (unspecified phase)
0.648 Remote Similarity NPD8114 Approved
0.648 Remote Similarity NPD8115 Approved
0.648 Remote Similarity NPD8098 Approved
0.6477 Remote Similarity NPD8316 Phase 2
0.6477 Remote Similarity NPD8317 Phase 2
0.6468 Remote Similarity NPD7576 Discontinued
0.6454 Remote Similarity NPD6732 Clinical (unspecified phase)
0.644 Remote Similarity NPD6176 Phase 1
0.6437 Remote Similarity NPD6173 Approved
0.6426 Remote Similarity NPD6164 Phase 2
0.6426 Remote Similarity NPD6165 Phase 2
0.6426 Remote Similarity NPD4086 Phase 1
0.6426 Remote Similarity NPD7727 Phase 2
0.6426 Remote Similarity NPD8292 Phase 2
0.6417 Remote Similarity NPD7465 Suspended
0.6411 Remote Similarity NPD6661 Clinical (unspecified phase)
0.6405 Remote Similarity NPD8431 Approved
0.6397 Remote Similarity NPD5003 Discontinued
0.639 Remote Similarity NPD6610 Clinical (unspecified phase)
0.6375 Remote Similarity NPD2121 Clinical (unspecified phase)
0.6371 Remote Similarity NPD6578 Clinical (unspecified phase)
0.6364 Remote Similarity NPD8430 Approved
0.6355 Remote Similarity NPD8253 Phase 3
0.6349 Remote Similarity NPD8282 Approved
0.6349 Remote Similarity NPD8283 Approved
0.6349 Remote Similarity NPD56 Approved
0.6343 Remote Similarity NPD7502 Clinical (unspecified phase)
0.6342 Remote Similarity NPD8524 Approved
0.6337 Remote Similarity NPD7967 Discontinued
0.6336 Remote Similarity NPD8356 Approved
0.6332 Remote Similarity NPD2787 Clinical (unspecified phase)
0.633 Remote Similarity NPD6263 Clinical (unspecified phase)
0.6323 Remote Similarity NPD8459 Approved
0.6323 Remote Similarity NPD8460 Approved
0.6318 Remote Similarity NPD6481 Clinical (unspecified phase)
0.6316 Remote Similarity NPD8641 Approved
0.6314 Remote Similarity NPD8359 Phase 2
0.631 Remote Similarity NPD2893 Phase 3
0.6305 Remote Similarity NPD7778 Approved
0.6305 Remote Similarity NPD7777 Approved
0.6305 Remote Similarity NPD53 Approved
0.6304 Remote Similarity NPD8097 Phase 3
0.6304 Remote Similarity NPD8096 Phase 3
0.6293 Remote Similarity NPD3394 Approved
0.6293 Remote Similarity NPD8525 Approved
0.6293 Remote Similarity NPD3393 Approved
0.6293 Remote Similarity NPD3389 Approved
0.6292 Remote Similarity NPD7688 Phase 1
0.6286 Remote Similarity NPD4499 Approved
0.6284 Remote Similarity NPD5199 Approved
0.6284 Remote Similarity NPD5198 Approved
0.6279 Remote Similarity NPD4341 Clinical (unspecified phase)
0.6276 Remote Similarity NPD2144 Approved
0.6276 Remote Similarity NPD6203 Clinical (unspecified phase)
0.6273 Remote Similarity NPD3360 Clinical (unspecified phase)
0.627 Remote Similarity NPD3486 Clinical (unspecified phase)
0.6269 Remote Similarity NPD7823 Clinical (unspecified phase)
0.6268 Remote Similarity NPD8523 Approved
0.6266 Remote Similarity NPD3038 Discontinued
0.6265 Remote Similarity NPD7070 Clinical (unspecified phase)
0.6265 Remote Similarity NPD2880 Discontinued
0.6264 Remote Similarity NPD3914 Clinical (unspecified phase)
0.626 Remote Similarity NPD5884 Clinical (unspecified phase)
0.6259 Remote Similarity NPD5891 Approved
0.6255 Remote Similarity NPD8248 Clinical (unspecified phase)
0.6255 Remote Similarity NPD6479 Discontinued
0.6255 Remote Similarity NPD484 Approved
0.625 Remote Similarity NPD2125 Clinical (unspecified phase)
0.625 Remote Similarity NPD7661 Clinical (unspecified phase)
0.625 Remote Similarity NPD4427 Phase 2
0.6245 Remote Similarity NPD8047 Clinical (unspecified phase)
0.6245 Remote Similarity NPD7878 Phase 2
0.6241 Remote Similarity NPD8466 Approved
0.6241 Remote Similarity NPD8428 Approved
0.6241 Remote Similarity NPD8465 Approved
0.6241 Remote Similarity NPD8427 Approved
0.6241 Remote Similarity NPD8429 Approved
0.6241 Remote Similarity NPD8467 Approved
0.624 Remote Similarity NPD4397 Phase 1
0.6235 Remote Similarity NPD6665 Discontinued
0.6234 Remote Similarity NPD8022 Clinical (unspecified phase)
0.6229 Remote Similarity NPD2185 Clinical (unspecified phase)
0.622 Remote Similarity NPD5901 Discontinued
0.6216 Remote Similarity NPD5679 Clinical (unspecified phase)
0.6215 Remote Similarity NPD7689 Approved
0.6215 Remote Similarity NPD6999 Discontinued
0.6215 Remote Similarity NPD7000 Clinical (unspecified phase)
0.6212 Remote Similarity NPD5001 Clinical (unspecified phase)
0.6211 Remote Similarity NPD8399 Phase 1
0.6211 Remote Similarity NPD7665 Phase 2
0.6211 Remote Similarity NPD7666 Phase 3
0.6211 Remote Similarity NPD2442 Approved
0.6211 Remote Similarity NPD8423 Phase 2
0.6211 Remote Similarity NPD2443 Approved
0.6204 Remote Similarity NPD3002 Clinical (unspecified phase)

  Bioactivity similarity: Similar Natural Products in NPASS

Bioactivity similarity was calculated based on bioactivity descriptors of compounds. The bioactivity descriptors were calculated by a recently developed AI algorithm Chemical Checker (CC) [Nature Biotechnology, 38:1087–1096, 2020; Nature Communications, 12:3932, 2021], which evaluated bioactivity similarities at five levels:
A: chemistry similarity;
B: biological targets similarity;
C: networks similarity;
D: cell-based bioactivity similarity;
E: similarity based on clinical data.

Those 5 categories of CC bioactivity descriptors were calculated and then subjected to manifold projection using UMAP algorithm, to project all NPs on a 2-Dimensional space. The current NP was highlighted with a small circle in the 2-D map. Below figures: left-to-right, A-to-E.

A: chemistry similarity
B: biological targets similarity
C: networks similarity
D: cell-based bioactivity similarity
E: similarity based on clinical data