Structure

Physi-Chem Properties

Molecular Weight:  488.35
Volume:  517.412
LogP:  4.082
LogD:  3.586
LogS:  -4.448
# Rotatable Bonds:  1
TPSA:  86.99
# H-Bond Aceptor:  5
# H-Bond Donor:  3
# Rings:  6
# Heavy Atoms:  5

MedChem Properties

QED Drug-Likeness Score:  0.446
Synthetic Accessibility Score:  6.443
Fsp3:  0.967
Lipinski Rule-of-5:  Accepted
Pfizer Rule:  Accepted
GSK Rule:  Rejected
BMS Rule:  0
Golden Triangle Rule:  Accepted
Chelating Alert:  0
PAINS Alert:  0

ADMET Properties (ADMETlab2.0)

ADMET: Absorption

Caco-2 Permeability:  -5.437
MDCK Permeability:  2.197980575147085e-05
Pgp-inhibitor:  0.011
Pgp-substrate:  0.0
Human Intestinal Absorption (HIA):  0.023
20% Bioavailability (F20%):  0.054
30% Bioavailability (F30%):  0.941

ADMET: Distribution

Blood-Brain-Barrier Penetration (BBB):  0.371
Plasma Protein Binding (PPB):  92.25418090820312%
Volume Distribution (VD):  0.75
Pgp-substrate:  5.614920616149902%

ADMET: Metabolism

CYP1A2-inhibitor:  0.003
CYP1A2-substrate:  0.626
CYP2C19-inhibitor:  0.006
CYP2C19-substrate:  0.782
CYP2C9-inhibitor:  0.046
CYP2C9-substrate:  0.027
CYP2D6-inhibitor:  0.005
CYP2D6-substrate:  0.067
CYP3A4-inhibitor:  0.171
CYP3A4-substrate:  0.151

ADMET: Excretion

Clearance (CL):  1.603
Half-life (T1/2):  0.405

ADMET: Toxicity

hERG Blockers:  0.202
Human Hepatotoxicity (H-HT):  0.547
Drug-inuced Liver Injury (DILI):  0.083
AMES Toxicity:  0.008
Rat Oral Acute Toxicity:  0.142
Maximum Recommended Daily Dose:  0.962
Skin Sensitization:  0.877
Carcinogencity:  0.119
Eye Corrosion:  0.004
Eye Irritation:  0.132
Respiratory Toxicity:  0.962

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  Natural Product: NPC18536

Natural Product ID:  NPC18536
Common Name*:   Orthosphenic Acid
IUPAC Name:   n.a.
Synonyms:   Orthosphenic Acid
Standard InCHIKey:  JPAXVSRGFJVPEU-XCIUXINDSA-N
Standard InCHI:  InChI=1S/C30H48O5/c1-18-29-8-7-19-26(4,20(29)15-22(31)30(18,34)35-17-29)12-14-28(6)21-16-25(3,23(32)33)10-9-24(21,2)11-13-27(19,28)5/h18-22,31,34H,7-17H2,1-6H3,(H,32,33)/t18-,19+,20+,21-,22-,24-,25-,26-,27-,28+,29+,30-/m1/s1
SMILES:  O[C@@H]1C[C@@H]2[C@@]3([C@H]([C@@]1(O)OC3)C)CC[C@H]1[C@@]2(C)CC[C@@]2([C@]1(C)CC[C@@]1([C@H]2C[C@@](C)(CC1)C(=O)O)C)C
Synthetic Gene Cluster:   n.a.
ChEMBL Identifier:   CHEMBL515079
PubChem CID:   20056194
Chemical Classification**:  
  • CHEMONTID:0000000 [Organic compounds]
    • [CHEMONTID:0000012] Lipids and lipid-like molecules
      • [CHEMONTID:0000259] Prenol lipids
        • [CHEMONTID:0001553] Triterpenoids

*Note: the InCHIKey will be temporarily assigned as the "Common Name" if no IUPAC name or alternative short name is available.
**Note: the Chemical Classification was calculated by NPClassifier Version 1.5. Reference: PMID:34662515.

  Species Source

Organism ID Organism Name Taxonomy Level Family SuperKingdom Isolation Part Collection Location Collection Time Reference
NPO13661 Tripterygium wilfordii Species Celastraceae Eukaryota n.a. n.a. n.a. DOI[10.1016/0031-9422(90)85349-K]
NPO13661 Tripterygium wilfordii Species Celastraceae Eukaryota n.a. root n.a. DOI[10.1186/1471-2202-6-1]
NPO13661 Tripterygium wilfordii Species Celastraceae Eukaryota n.a. n.a. n.a. PMID[10579865]
NPO13661 Tripterygium wilfordii Species Celastraceae Eukaryota n.a. leaf n.a. PMID[10716597]
NPO24176 Streptomyces fradiae Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[10757717]
NPO13661 Tripterygium wilfordii Species Celastraceae Eukaryota n.a. n.a. n.a. PMID[10757718]
NPO13661 Tripterygium wilfordii Species Celastraceae Eukaryota n.a. n.a. n.a. PMID[11374948]
NPO13661 Tripterygium wilfordii Species Celastraceae Eukaryota n.a. n.a. n.a. PMID[11561442]
NPO13661 Tripterygium wilfordii Species Celastraceae Eukaryota n.a. n.a. n.a. PMID[12579877]
NPO2353 Bituminaria bituminosa Species Fabaceae Eukaryota n.a. aerial part n.a. PMID[12943781]
NPO7484 Salacia chinensis Species Celastraceae Eukaryota n.a. n.a. n.a. PMID[12951446]
NPO13661 Tripterygium wilfordii Species Celastraceae Eukaryota n.a. root n.a. PMID[1375626]
NPO13661 Tripterygium wilfordii Species Celastraceae Eukaryota n.a. n.a. n.a. PMID[1375626]
NPO7484 Salacia chinensis Species Celastraceae Eukaryota stems Thailand n.a. PMID[14510595]
NPO14555 Porella swartziana Species Porellaceae Eukaryota n.a. Argentine n.a. PMID[14738381]
NPO14555 Porella swartziana Species Porellaceae Eukaryota n.a. n.a. n.a. PMID[14738381]
NPO13661 Tripterygium wilfordii Species Celastraceae Eukaryota n.a. root n.a. PMID[1602302]
NPO13661 Tripterygium wilfordii Species Celastraceae Eukaryota n.a. n.a. n.a. PMID[1602302]
NPO13661 Tripterygium wilfordii Species Celastraceae Eukaryota n.a. root n.a. PMID[16864458]
NPO13661 Tripterygium wilfordii Species Celastraceae Eukaryota roots n.a. n.a. PMID[16989518]
NPO13661 Tripterygium wilfordii Species Celastraceae Eukaryota n.a. root n.a. PMID[17250858]
NPO13661 Tripterygium wilfordii Species Celastraceae Eukaryota n.a. n.a. n.a. PMID[17265278]
NPO1207 Microtropis triflora Species Celastraceae Eukaryota n.a. n.a. n.a. PMID[17972583]
NPO13661 Tripterygium wilfordii Species Celastraceae Eukaryota n.a. leaf n.a. PMID[1823717]
NPO13661 Tripterygium wilfordii Species Celastraceae Eukaryota n.a. root n.a. PMID[1823717]
NPO13661 Tripterygium wilfordii Species Celastraceae Eukaryota n.a. n.a. n.a. PMID[18554602]
NPO13661 Tripterygium wilfordii Species Celastraceae Eukaryota n.a. bark n.a. PMID[18996177]
NPO2348 Tripterygium regelii Species Celastraceae Eukaryota n.a. bark n.a. PMID[20167482]
NPO13661 Tripterygium wilfordii Species Celastraceae Eukaryota n.a. root n.a. PMID[21486005]
NPO13661 Tripterygium wilfordii Species Celastraceae Eukaryota root n.a. n.a. PMID[21486005]
NPO13661 Tripterygium wilfordii Species Celastraceae Eukaryota n.a. n.a. n.a. PMID[21514608]
NPO12977 Solenopsis invicta Species Formicidae Eukaryota n.a. n.a. n.a. PMID[21905650]
NPO13661 Tripterygium wilfordii Species Celastraceae Eukaryota dried roots purchased from Sichuan Neautus Traditional Chinese Medicine Co. Ltd. (Chengdu, P.R. China) n.a. PMID[22148431]
NPO13661 Tripterygium wilfordii Species Celastraceae Eukaryota leaves n.a. n.a. PMID[23268606]
NPO13661 Tripterygium wilfordii Species Celastraceae Eukaryota n.a. n.a. n.a. PMID[23852638]
NPO13661 Tripterygium wilfordii Species Celastraceae Eukaryota n.a. n.a. n.a. PMID[24549173]
NPO23289 Heracleum sphondylium Species Apiaceae Eukaryota n.a. n.a. n.a. PMID[24697288]
NPO13661 Tripterygium wilfordii Species Celastraceae Eukaryota n.a. n.a. n.a. PMID[24963543]
NPO13661 Tripterygium wilfordii Species Celastraceae Eukaryota n.a. n.a. n.a. PMID[25237706]
NPO13661 Tripterygium wilfordii Species Celastraceae Eukaryota n.a. bark n.a. PMID[2534610]
NPO2348 Tripterygium regelii Species Celastraceae Eukaryota n.a. stem n.a. PMID[27113553]
NPO2348 Tripterygium regelii Species Celastraceae Eukaryota n.a. root n.a. PMID[2801129]
NPO13661 Tripterygium wilfordii Species Celastraceae Eukaryota n.a. root n.a. PMID[2816380]
NPO13661 Tripterygium wilfordii Species Celastraceae Eukaryota Leaves n.a. n.a. PMID[29355322]
NPO13661 Tripterygium wilfordii Species Celastraceae Eukaryota Leaves n.a. n.a. PMID[31556299]
NPO14826 Streptomyces mobaraensis Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[32998509]
NPO13661 Tripterygium wilfordii Species Celastraceae Eukaryota n.a. n.a. n.a. PMID[7102323]
NPO13661 Tripterygium wilfordii Species Celastraceae Eukaryota n.a. n.a. n.a. PMID[7304185]
NPO13661 Tripterygium wilfordii Species Celastraceae Eukaryota n.a. n.a. n.a. PMID[8699928]
NPO13661 Tripterygium wilfordii Species Celastraceae Eukaryota n.a. n.a. n.a. PMID[8722541]
NPO9420 Aspergillus arenarius Species Aspergillaceae Eukaryota sclerotia n.a. n.a. PMID[9599285]
NPO13661 Tripterygium wilfordii Species Celastraceae Eukaryota n.a. root n.a. Database[Article]
NPO13661 Tripterygium wilfordii Species Celastraceae Eukaryota n.a. n.a. n.a. Database[Article]
NPO2348 Tripterygium regelii Species Celastraceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO15961 Sida cordifolia Species Malvaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO13661 Tripterygium wilfordii Species Celastraceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO13719 Salacia prinoides Species Sertulariidae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO23289 Heracleum sphondylium Species Apiaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO15510 Kummerowia striata Species Fabaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO5728 Gerbera piloselloides Species Asteraceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO16847 Consolida ajacis Species Ranunculaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO12416 Quercus mongolica Species Fagaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO12450 Cneorum pulverulentum Species Rutaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO13719 Salacia prinoides Species Sertulariidae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO2348 Tripterygium regelii Species Celastraceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO13661 Tripterygium wilfordii Species Celastraceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO23289 Heracleum sphondylium Species Apiaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO15961 Sida cordifolia Species Malvaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO12416 Quercus mongolica Species Fagaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO10247 Orthosphenia mexicana Species Celastraceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO14869 Ormosia panamensis Species Limoniidae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO16847 Consolida ajacis Species Ranunculaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO5728 Gerbera piloselloides Species Asteraceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO15510 Kummerowia striata Species Fabaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO12416 Quercus mongolica Species Fagaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO16847 Consolida ajacis Species Ranunculaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO2348 Tripterygium regelii Species Celastraceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO5728 Gerbera piloselloides Species Asteraceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO15272 Mascarenhasia arborescens Species Apocynaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO9780 Merremia umbellata Species Convolvulaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO14826 Streptomyces mobaraensis Species Streptomycetaceae Bacteria n.a. n.a. n.a. Database[UNPD]
NPO12680 Perityle vaseyi Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO5078 Turraeanthus mannii Species Meliaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO15858 Phoebe formosana Species Lauraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO15510 Kummerowia striata Species Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO12416 Quercus mongolica Species Fagaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO15961 Sida cordifolia Species Malvaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO15015 Meconopsis napaulensis Species Papaveraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO16428 Millettia conraui Species Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO15393 Eucalyptus flocktoniae Species Myrtaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO24176 Streptomyces fradiae Species Streptomycetaceae Bacteria n.a. n.a. n.a. Database[UNPD]
NPO12555 Aspergillus quadrilineatus Species Aspergillaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO13375 Palafoxia rosea Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO26017 Dalbergia stipulacea Species Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO16847 Consolida ajacis Species Ranunculaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO23289 Heracleum sphondylium Species Apiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO24732 Cereus weberi Species Sagartiidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO14218 Spodoptera littoralis Species 0ctuidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO15138 Rheum webbianum Species Polygonaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO16516 Centaurea seridis Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO4935 Dinemasporium strigosum Species Chaetosphaeriaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO4267 Ceratocystis clavigera Species Ceratocystidaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO16758 Satureja cuneifolia Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO13548 Chrozophora obliqua Species Euphorbiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO15755 Thymbra spicata Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO12977 Solenopsis invicta Species Formicidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO5269 Coleus garckeanus Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO10247 Orthosphenia mexicana Species Celastraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO14555 Porella swartziana Species Porellaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO1207 Microtropis triflora Species Celastraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO8499 Osmerus mordax Species Osmeridae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO7484 Salacia chinensis Species Celastraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO11194 Bombus hortorum Species Apidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO13719 Salacia prinoides Species Sertulariidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO13859 Senecio flavus Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO11881 Adenopeltis colliguaya Species Euphorbiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO2348 Tripterygium regelii Species Celastraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO5552 Solanum sisymbriifolium Species Solanaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO14034 Salvia coulteri Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO13661 Tripterygium wilfordii Species Celastraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO14869 Ormosia panamensis Species Limoniidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO16175 Trichia floriformis Species Trichiidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO2353 Bituminaria bituminosa Species Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO13230 Pedicularis condensata Species Orobanchaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO5728 Gerbera piloselloides Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO16678 Flindersia brayleyana Species Rutaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO11599 Elaeagnus commutata Species Elaeagnaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO9420 Aspergillus arenarius Species Aspergillaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO13710 Lyophyllum shimeji Species Lyophyllaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO3391 Jungermannia obovata Species Jungermanniaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO12450 Cneorum pulverulentum Species Rutaceae Eukaryota n.a. n.a. n.a. Database[UNPD]

☑ Note for Reference:
In addition to directly collecting NP source organism data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated them from below databases:
UNPD: Universal Natural Products Database [PMID: 23638153].
StreptomeDB: a database of streptomycetes natural products [PMID: 33051671].
TM-MC: a database of medicinal materials and chemical compounds in Northeast Asian traditional medicine [PMID: 26156871].
TCM@Taiwan: a Traditional Chinese Medicine database [PMID: 21253603].
TCMID: a Traditional Chinese Medicine database [PMID: 29106634].
TCMSP: The traditional Chinese medicine systems pharmacology database and analysis platform [PMID: 24735618].
HerDing: a herb recommendation system to treat diseases using genes and chemicals [PMID: 26980517].
MetaboLights: a metabolomics database [PMID: 27010336].
FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].

  NP Quantity Composition/Concentration

Organism ID NP ID Organism Material Preparation Organism Part NP Quantity (Standard) NP Quantity (Minimum) NP Quantity (Maximum) Quantity Unit Reference

☑ Note for Reference:
In addition to directly collecting NP quantitative data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated NP quantitative records for specific NP domains (e.g., NPS from foods or herbs) from domain-specific databases. These databases include:
DUKE: Dr. Duke's Phytochemical and Ethnobotanical Databases.
PHENOL EXPLORER: is the first comprehensive database on polyphenol content in foods [PMID: 24103452], its homepage can be accessed at here.
FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].

  Biological Activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference
NPT68 Individual Protein Aldose reductase Rattus norvegicus IC50 > 100000.0 nM PMID[503780]
NPT68 Individual Protein Aldose reductase Rattus norvegicus Inhibition = 19.0 % PMID[503780]

☑ Note for Activity Records:
☉ The quantitative biological activities were primarily integrated from ChEMBL (Version-30) database and were also directly collected from PubMed literature. PubMed PMID was provided as the reference link for each activity record.

  Chemically structural similarity: I. Similar Active Natural Products in NPASS

Top-200 similar NPs were calculated against the active-NP-set (includes 4,3285 NPs with experimentally-derived bioactivity available in NPASS)

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules. Tc lies between [0, 1] where '1' indicates the highest similarity. What is Tanimoto coefficient

●  The left chart: Distribution of similarity level between NPC18536 and all remaining natural products in the NPASS database.
●  The right table: Most similar natural products (Tc>=0.56 or Top200).

Similarity Score Similarity Level Natural Product ID
1.0 High Similarity NPC50443
0.9121 High Similarity NPC472145
0.9091 High Similarity NPC185529
0.9091 High Similarity NPC472146
0.9022 High Similarity NPC472144
0.8929 High Similarity NPC474870
0.8929 High Similarity NPC271572
0.8837 High Similarity NPC473299
0.8804 High Similarity NPC235109
0.8696 High Similarity NPC82633
0.8602 High Similarity NPC475785
0.8602 High Similarity NPC163685
0.8506 High Similarity NPC269684
0.8488 Intermediate Similarity NPC280781
0.8488 Intermediate Similarity NPC48756
0.8462 Intermediate Similarity NPC470114
0.8444 Intermediate Similarity NPC476379
0.8404 Intermediate Similarity NPC475765
0.8391 Intermediate Similarity NPC208912
0.8391 Intermediate Similarity NPC2096
0.8391 Intermediate Similarity NPC121121
0.8384 Intermediate Similarity NPC126753
0.8353 Intermediate Similarity NPC243594
0.8353 Intermediate Similarity NPC472608
0.8353 Intermediate Similarity NPC31031
0.8352 Intermediate Similarity NPC67653
0.8352 Intermediate Similarity NPC471459
0.8351 Intermediate Similarity NPC80640
0.8333 Intermediate Similarity NPC80417
0.8316 Intermediate Similarity NPC471241
0.8316 Intermediate Similarity NPC472273
0.8315 Intermediate Similarity NPC62572
0.83 Intermediate Similarity NPC207693
0.8295 Intermediate Similarity NPC474284
0.8295 Intermediate Similarity NPC475820
0.8295 Intermediate Similarity NPC474346
0.8295 Intermediate Similarity NPC474253
0.8295 Intermediate Similarity NPC213737
0.828 Intermediate Similarity NPC472148
0.828 Intermediate Similarity NPC472147
0.8276 Intermediate Similarity NPC476071
0.8242 Intermediate Similarity NPC476435
0.8218 Intermediate Similarity NPC22709
0.8202 Intermediate Similarity NPC237938
0.8202 Intermediate Similarity NPC219535
0.8182 Intermediate Similarity NPC469827
0.8182 Intermediate Similarity NPC267637
0.8172 Intermediate Similarity NPC475878
0.8144 Intermediate Similarity NPC51579
0.8137 Intermediate Similarity NPC470622
0.8137 Intermediate Similarity NPC471431
0.8132 Intermediate Similarity NPC470920
0.8111 Intermediate Similarity NPC131350
0.81 Intermediate Similarity NPC119628
0.81 Intermediate Similarity NPC158367
0.81 Intermediate Similarity NPC184805
0.81 Intermediate Similarity NPC273189
0.81 Intermediate Similarity NPC158051
0.8061 Intermediate Similarity NPC477172
0.8046 Intermediate Similarity NPC201276
0.8046 Intermediate Similarity NPC73013
0.8046 Intermediate Similarity NPC80891
0.8043 Intermediate Similarity NPC471221
0.8041 Intermediate Similarity NPC471374
0.8041 Intermediate Similarity NPC471375
0.8041 Intermediate Similarity NPC209798
0.8039 Intermediate Similarity NPC240125
0.8039 Intermediate Similarity NPC91583
0.8022 Intermediate Similarity NPC471410
0.8022 Intermediate Similarity NPC83242
0.8022 Intermediate Similarity NPC471411
0.8021 Intermediate Similarity NPC256227
0.8021 Intermediate Similarity NPC116683
0.802 Intermediate Similarity NPC475630
0.802 Intermediate Similarity NPC475234
0.802 Intermediate Similarity NPC40716
0.802 Intermediate Similarity NPC138219
0.802 Intermediate Similarity NPC471430
0.8 Intermediate Similarity NPC25037
0.8 Intermediate Similarity NPC473336
0.8 Intermediate Similarity NPC34984
0.8 Intermediate Similarity NPC100078
0.8 Intermediate Similarity NPC471044
0.8 Intermediate Similarity NPC18953
0.7981 Intermediate Similarity NPC157571
0.798 Intermediate Similarity NPC470172
0.7978 Intermediate Similarity NPC477446
0.7978 Intermediate Similarity NPC470155
0.7978 Intermediate Similarity NPC61107
0.7978 Intermediate Similarity NPC289486
0.7978 Intermediate Similarity NPC477447
0.7959 Intermediate Similarity NPC471426
0.7959 Intermediate Similarity NPC471428
0.7959 Intermediate Similarity NPC471427
0.7955 Intermediate Similarity NPC472943
0.7955 Intermediate Similarity NPC472951
0.7955 Intermediate Similarity NPC261616
0.7941 Intermediate Similarity NPC473688
0.7941 Intermediate Similarity NPC469826
0.7941 Intermediate Similarity NPC262567
0.7941 Intermediate Similarity NPC285576
0.7941 Intermediate Similarity NPC471626
0.7941 Intermediate Similarity NPC231566
0.7941 Intermediate Similarity NPC88744
0.7935 Intermediate Similarity NPC213658
0.7935 Intermediate Similarity NPC110365
0.7935 Intermediate Similarity NPC45833
0.7935 Intermediate Similarity NPC239938
0.7935 Intermediate Similarity NPC62202
0.7931 Intermediate Similarity NPC224802
0.7931 Intermediate Similarity NPC171426
0.7931 Intermediate Similarity NPC324700
0.7931 Intermediate Similarity NPC34046
0.7931 Intermediate Similarity NPC26029
0.7931 Intermediate Similarity NPC80089
0.7921 Intermediate Similarity NPC166079
0.7917 Intermediate Similarity NPC215570
0.7917 Intermediate Similarity NPC94582
0.7917 Intermediate Similarity NPC57964
0.7912 Intermediate Similarity NPC478111
0.79 Intermediate Similarity NPC225238
0.79 Intermediate Similarity NPC473406
0.7895 Intermediate Similarity NPC291373
0.7895 Intermediate Similarity NPC475307
0.7895 Intermediate Similarity NPC211845
0.7895 Intermediate Similarity NPC122083
0.7895 Intermediate Similarity NPC256104
0.7895 Intermediate Similarity NPC182740
0.7889 Intermediate Similarity NPC111582
0.7889 Intermediate Similarity NPC477285
0.7872 Intermediate Similarity NPC77756
0.7865 Intermediate Similarity NPC470156
0.7865 Intermediate Similarity NPC470154
0.7865 Intermediate Similarity NPC475743
0.7865 Intermediate Similarity NPC50658
0.7865 Intermediate Similarity NPC73515
0.7864 Intermediate Similarity NPC154906
0.7864 Intermediate Similarity NPC469825
0.7864 Intermediate Similarity NPC473844
0.7864 Intermediate Similarity NPC51947
0.7864 Intermediate Similarity NPC87393
0.7849 Intermediate Similarity NPC3032
0.7849 Intermediate Similarity NPC473319
0.7849 Intermediate Similarity NPC131104
0.7843 Intermediate Similarity NPC203974
0.7835 Intermediate Similarity NPC238796
0.7835 Intermediate Similarity NPC203434
0.7835 Intermediate Similarity NPC237071
0.7835 Intermediate Similarity NPC476728
0.783 Intermediate Similarity NPC477465
0.7826 Intermediate Similarity NPC215968
0.7826 Intermediate Similarity NPC80700
0.7826 Intermediate Similarity NPC472272
0.7826 Intermediate Similarity NPC155531
0.7816 Intermediate Similarity NPC317913
0.7816 Intermediate Similarity NPC298168
0.7816 Intermediate Similarity NPC207010
0.7816 Intermediate Similarity NPC143133
0.7812 Intermediate Similarity NPC277399
0.7802 Intermediate Similarity NPC477434
0.7802 Intermediate Similarity NPC105895
0.7802 Intermediate Similarity NPC79308
0.78 Intermediate Similarity NPC471254
0.78 Intermediate Similarity NPC244969
0.78 Intermediate Similarity NPC213528
0.7788 Intermediate Similarity NPC199457
0.7788 Intermediate Similarity NPC68419
0.7788 Intermediate Similarity NPC66513
0.7788 Intermediate Similarity NPC108709
0.7788 Intermediate Similarity NPC110139
0.7788 Intermediate Similarity NPC75747
0.7788 Intermediate Similarity NPC7870
0.7788 Intermediate Similarity NPC102914
0.7778 Intermediate Similarity NPC100366
0.7778 Intermediate Similarity NPC242771
0.7778 Intermediate Similarity NPC41843
0.7778 Intermediate Similarity NPC311642
0.7778 Intermediate Similarity NPC60018
0.7778 Intermediate Similarity NPC20028
0.7778 Intermediate Similarity NPC154043
0.7778 Intermediate Similarity NPC202688
0.7778 Intermediate Similarity NPC477286
0.7778 Intermediate Similarity NPC164289
0.7778 Intermediate Similarity NPC286719
0.7767 Intermediate Similarity NPC472079
0.7765 Intermediate Similarity NPC68426
0.7765 Intermediate Similarity NPC282905
0.7765 Intermediate Similarity NPC477229
0.7755 Intermediate Similarity NPC470425
0.7753 Intermediate Similarity NPC475456
0.7745 Intermediate Similarity NPC477877
0.7745 Intermediate Similarity NPC306776
0.7736 Intermediate Similarity NPC97002
0.7732 Intermediate Similarity NPC305808
0.7727 Intermediate Similarity NPC252483
0.7727 Intermediate Similarity NPC191345
0.7723 Intermediate Similarity NPC471253
0.7723 Intermediate Similarity NPC107385
0.7717 Intermediate Similarity NPC476715
0.7717 Intermediate Similarity NPC266651

  Chemically structural similarity: II. Similar Clinical/Approved Drugs

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules.

●  The left chart: Distribution of similarity level between NPC18536 and all drugs/candidates.
●  The right table: Most similar clinical/approved drugs (Tc>=0.56 or Top200).

Similarity Score Similarity Level Drug ID Developmental Stage
0.7931 Intermediate Similarity NPD6697 Approved
0.7931 Intermediate Similarity NPD6118 Approved
0.7931 Intermediate Similarity NPD6115 Approved
0.7931 Intermediate Similarity NPD6114 Approved
0.7816 Intermediate Similarity NPD6116 Phase 1
0.7701 Intermediate Similarity NPD6117 Approved
0.7647 Intermediate Similarity NPD8170 Clinical (unspecified phase)
0.7524 Intermediate Similarity NPD8132 Clinical (unspecified phase)
0.7471 Intermediate Similarity NPD6113 Clinical (unspecified phase)
0.7248 Intermediate Similarity NPD8133 Approved
0.7245 Intermediate Similarity NPD8035 Phase 2
0.7245 Intermediate Similarity NPD8034 Phase 2
0.7207 Intermediate Similarity NPD8295 Clinical (unspecified phase)
0.7191 Intermediate Similarity NPD3703 Phase 2
0.7174 Intermediate Similarity NPD6928 Phase 2
0.7172 Intermediate Similarity NPD8171 Discontinued
0.7158 Intermediate Similarity NPD7520 Clinical (unspecified phase)
0.7045 Intermediate Similarity NPD4808 Clinical (unspecified phase)
0.7045 Intermediate Similarity NPD4809 Clinical (unspecified phase)
0.7011 Intermediate Similarity NPD3699 Clinical (unspecified phase)
0.7011 Intermediate Similarity NPD3700 Clinical (unspecified phase)
0.6964 Remote Similarity NPD6940 Discontinued
0.6944 Remote Similarity NPD5345 Clinical (unspecified phase)
0.6931 Remote Similarity NPD7748 Approved
0.69 Remote Similarity NPD7515 Phase 2
0.6893 Remote Similarity NPD7902 Approved
0.6881 Remote Similarity NPD4061 Clinical (unspecified phase)
0.6854 Remote Similarity NPD5777 Approved
0.6838 Remote Similarity NPD8328 Phase 3
0.6771 Remote Similarity NPD3670 Clinical (unspecified phase)
0.6771 Remote Similarity NPD3669 Approved
0.6742 Remote Similarity NPD7532 Clinical (unspecified phase)
0.6742 Remote Similarity NPD4244 Approved
0.6742 Remote Similarity NPD4245 Approved
0.6737 Remote Similarity NPD1780 Approved
0.6737 Remote Similarity NPD1779 Approved
0.6697 Remote Similarity NPD6412 Phase 2
0.6667 Remote Similarity NPD6081 Approved
0.6667 Remote Similarity NPD4224 Phase 2
0.6667 Remote Similarity NPD7638 Approved
0.6636 Remote Similarity NPD6686 Approved
0.663 Remote Similarity NPD3702 Approved
0.6629 Remote Similarity NPD3698 Phase 2
0.6629 Remote Similarity NPD4267 Clinical (unspecified phase)
0.6604 Remote Similarity NPD7640 Approved
0.6604 Remote Similarity NPD7639 Approved
0.6602 Remote Similarity NPD7901 Clinical (unspecified phase)
0.6602 Remote Similarity NPD7900 Approved
0.6583 Remote Similarity NPD7507 Approved
0.6556 Remote Similarity NPD4789 Approved
0.6542 Remote Similarity NPD1700 Approved
0.6518 Remote Similarity NPD5955 Clinical (unspecified phase)
0.6517 Remote Similarity NPD5361 Clinical (unspecified phase)
0.6517 Remote Similarity NPD5360 Phase 3
0.6481 Remote Similarity NPD7632 Discontinued
0.6475 Remote Similarity NPD7736 Approved
0.6449 Remote Similarity NPD8418 Phase 2
0.6423 Remote Similarity NPD7319 Approved
0.6421 Remote Similarity NPD3671 Phase 1
0.6364 Remote Similarity NPD7492 Approved
0.6364 Remote Similarity NPD3171 Clinical (unspecified phase)
0.6356 Remote Similarity NPD7516 Approved
0.6348 Remote Similarity NPD4632 Approved
0.6346 Remote Similarity NPD6399 Phase 3
0.6344 Remote Similarity NPD1811 Approved
0.6344 Remote Similarity NPD1810 Approved
0.6325 Remote Similarity NPD6009 Approved
0.6311 Remote Similarity NPD6616 Approved
0.6303 Remote Similarity NPD6054 Approved
0.6303 Remote Similarity NPD8377 Approved
0.6303 Remote Similarity NPD6059 Approved
0.6303 Remote Similarity NPD8294 Approved
0.6271 Remote Similarity NPD7328 Approved
0.6271 Remote Similarity NPD7327 Approved
0.626 Remote Similarity NPD7078 Approved
0.626 Remote Similarity NPD8293 Discontinued
0.625 Remote Similarity NPD8335 Approved
0.625 Remote Similarity NPD8296 Approved
0.625 Remote Similarity NPD8380 Approved
0.625 Remote Similarity NPD6921 Approved
0.625 Remote Similarity NPD8378 Approved
0.625 Remote Similarity NPD8379 Approved
0.625 Remote Similarity NPD371 Approved
0.625 Remote Similarity NPD5954 Clinical (unspecified phase)
0.625 Remote Similarity NPD8033 Approved
0.6226 Remote Similarity NPD7991 Discontinued
0.6198 Remote Similarity NPD6370 Approved
0.6167 Remote Similarity NPD6319 Approved
0.6161 Remote Similarity NPD7128 Approved
0.6161 Remote Similarity NPD5739 Approved
0.6161 Remote Similarity NPD6675 Approved
0.6161 Remote Similarity NPD6402 Approved
0.6148 Remote Similarity NPD6067 Discontinued
0.6129 Remote Similarity NPD4758 Discontinued
0.6121 Remote Similarity NPD6882 Approved
0.6121 Remote Similarity NPD8297 Approved
0.6116 Remote Similarity NPD6016 Approved
0.6116 Remote Similarity NPD6015 Approved
0.6082 Remote Similarity NPD4802 Phase 2
0.6082 Remote Similarity NPD5364 Discontinued
0.6082 Remote Similarity NPD4238 Approved
0.6067 Remote Similarity NPD7909 Approved
0.6066 Remote Similarity NPD5988 Approved
0.6055 Remote Similarity NPD4225 Approved
0.6053 Remote Similarity NPD6899 Approved
0.6053 Remote Similarity NPD6881 Approved
0.6053 Remote Similarity NPD7320 Approved
0.605 Remote Similarity NPD7115 Discovery
0.6022 Remote Similarity NPD2254 Approved
0.6022 Remote Similarity NPD2686 Approved
0.6022 Remote Similarity NPD2687 Approved
0.602 Remote Similarity NPD7645 Phase 2
0.6018 Remote Similarity NPD6008 Approved
0.6016 Remote Similarity NPD7604 Phase 2
0.6 Remote Similarity NPD6372 Approved
0.6 Remote Similarity NPD6373 Approved
0.5984 Remote Similarity NPD7503 Approved
0.5984 Remote Similarity NPD8517 Approved
0.5984 Remote Similarity NPD8516 Approved
0.5984 Remote Similarity NPD8515 Approved
0.5984 Remote Similarity NPD5983 Phase 2
0.5984 Remote Similarity NPD8513 Phase 3
0.5965 Remote Similarity NPD5697 Approved
0.5965 Remote Similarity NPD5701 Approved
0.5962 Remote Similarity NPD7513 Clinical (unspecified phase)
0.5952 Remote Similarity NPD6033 Approved
0.5952 Remote Similarity NPD3729 Clinical (unspecified phase)
0.5948 Remote Similarity NPD7102 Approved
0.5948 Remote Similarity NPD7290 Approved
0.5948 Remote Similarity NPD6883 Approved
0.5922 Remote Similarity NPD3618 Phase 1
0.592 Remote Similarity NPD6336 Discontinued
0.5913 Remote Similarity NPD6011 Approved
0.5905 Remote Similarity NPD5328 Approved
0.5897 Remote Similarity NPD6847 Approved
0.5897 Remote Similarity NPD8130 Phase 1
0.5897 Remote Similarity NPD8413 Clinical (unspecified phase)
0.5897 Remote Similarity NPD6649 Approved
0.5897 Remote Similarity NPD6869 Approved
0.5897 Remote Similarity NPD6617 Approved
0.5897 Remote Similarity NPD6401 Clinical (unspecified phase)
0.5897 Remote Similarity NPD6650 Approved
0.5882 Remote Similarity NPD4786 Approved
0.5862 Remote Similarity NPD6012 Approved
0.5862 Remote Similarity NPD6014 Approved
0.5862 Remote Similarity NPD6013 Approved
0.5851 Remote Similarity NPD4787 Phase 1
0.5842 Remote Similarity NPD3667 Approved
0.5818 Remote Similarity NPD6084 Phase 2
0.5818 Remote Similarity NPD6083 Phase 2
0.5806 Remote Similarity NPD229 Approved
0.58 Remote Similarity NPD7525 Registered
0.5795 Remote Similarity NPD3198 Approved
0.5794 Remote Similarity NPD6079 Approved
0.5789 Remote Similarity NPD4057 Clinical (unspecified phase)
0.5789 Remote Similarity NPD4056 Clinical (unspecified phase)
0.5784 Remote Similarity NPD4788 Approved
0.5769 Remote Similarity NPD7521 Approved
0.5769 Remote Similarity NPD7334 Approved
0.5769 Remote Similarity NPD6684 Approved
0.5769 Remote Similarity NPD5330 Approved
0.5769 Remote Similarity NPD6409 Approved
0.5769 Remote Similarity NPD7146 Approved
0.5765 Remote Similarity NPD3730 Approved
0.5765 Remote Similarity NPD3728 Approved
0.5755 Remote Similarity NPD7285 Clinical (unspecified phase)
0.5741 Remote Similarity NPD4202 Approved
0.5739 Remote Similarity NPD6920 Discontinued
0.5678 Remote Similarity NPD4634 Approved
0.5676 Remote Similarity NPD4755 Approved
0.5667 Remote Similarity NPD8298 Phase 2
0.566 Remote Similarity NPD6903 Approved
0.566 Remote Similarity NPD5737 Approved
0.566 Remote Similarity NPD6672 Approved
0.5648 Remote Similarity NPD6411 Approved
0.5641 Remote Similarity NPD8174 Phase 2
0.5636 Remote Similarity NPD6356 Clinical (unspecified phase)
0.5614 Remote Similarity NPD8138 Approved
0.5614 Remote Similarity NPD8084 Approved
0.5614 Remote Similarity NPD8083 Approved
0.5614 Remote Similarity NPD8085 Approved
0.5614 Remote Similarity NPD8139 Approved
0.5614 Remote Similarity NPD8082 Approved
0.5614 Remote Similarity NPD8086 Approved
0.561 Remote Similarity NPD6335 Approved

  Bioactivity similarity: Similar Natural Products in NPASS

Bioactivity similarity was calculated based on bioactivity descriptors of compounds. The bioactivity descriptors were calculated by a recently developed AI algorithm Chemical Checker (CC) [Nature Biotechnology, 38:1087–1096, 2020; Nature Communications, 12:3932, 2021], which evaluated bioactivity similarities at five levels:
A: chemistry similarity;
B: biological targets similarity;
C: networks similarity;
D: cell-based bioactivity similarity;
E: similarity based on clinical data.

Those 5 categories of CC bioactivity descriptors were calculated and then subjected to manifold projection using UMAP algorithm, to project all NPs on a 2-Dimensional space. The current NP was highlighted with a small circle in the 2-D map. Below figures: left-to-right, A-to-E.

A: chemistry similarity
B: biological targets similarity
C: networks similarity
D: cell-based bioactivity similarity
E: similarity based on clinical data