Natural Product: NPC210926

Natural Product IDNPC210926
Common Name
?
The InCHIKey will be temporarily assigned as the "Common Name" if no IUPAC name or alternative short name is available.
SHUUAUOAWODYLP-FUEATBHYSA-N
IUPAC Name n.a.
Synonyms
Synthetic Gene Cluster n.a.
ChEMBL Identifier n.a.
PubChem CID 21591283
Chemical Classification
  • CHEMONTID:0000000 [Organic compounds]
    • [CHEMONTID:0000012] Lipids and lipid-like molecules
      • [CHEMONTID:0000259] Prenol lipids
        • [CHEMONTID:0002049] Terpene glycosides
          • [CHEMONTID:0001580] Triterpene glycosides
            • [CHEMONTID:0002358] Triterpene saponins

The Chemical Classification was calculated by Classyfire, a software for chemical taxonomy calculation. Reference: DOI:10.1186/s13321-016-0174-y.

  Chemical Representations

Standard InCHIKey SHUUAUOAWODYLP-FUEATBHYSA-N
Standard InCHI InChI=1S/C66H106O32/c1-24-34(70)38(74)45(81)54(87-24)93-48-26(3)89-56(47(83)44(48)80)96-51-41(77)37(73)30(22-68)91-58(51)98-60(86)66-18-16-61(4,5)20-28(66)27-10-11-32-62(6)14-13-33(63(7,23-69)31(62)12-15-65(32,9)64(27,8)17-19-66)92-59-52(43(79)42(78)49(94-59)53(84)85)97-57-50(40(76)36(72)29(21-67)90-57)95-55-46(82)39(75)35(71)25(2)88-55/h10,24-26,28-52,54-59,67-83H,11-23H2,1-9H3,(H,84,85)/t24-,25-,26-,28-,29+,30+,31+,32+,33-,34-,35-,36-,37+,38+,39+,40-,41-,42-,43-,44-,45+,46+,47+,48-,49-,50+,51+,52+,54-,55-,56-,57-,58-,59+,62-,63+,64+,65+,66-/m0/s1
SMILES C[C@H]1[C@@H]([C@H]([C@H]([C@@H](O1)O[C@H]1[C@H](C)O[C@H]([C@@H]([C@@H]1O)O)O[C@@H]1[C@H]([C@@H]([C@@H](CO)O[C@H]1OC(=O)[C@@]12CCC(C)(C)C[C@H]2C2=CC[C@@H]3[C@@]4(C)CC[C@@H]([C@](C)(CO)[C@@H]4CC[C@@]3(C)[C@]2(C)CC1)O[C@H]1[C@@H]([C@H]([C@@H]([C@@H](C(=O)O)O1)O)O)O[C@H]1[C@@H]([C@H]([C@H]([C@@H](CO)O1)O)O)O[C@H]1[C@@H]([C@@H]([C@H]([C@H](C)O1)O)O)O)O)O)O)O)O

  Calculated Properties

Physi-Chem Properties

Molecular Weight:   1410.67 Volume:   1329.348
?
Van der Waals volume.
Dense:   1.061 LogP:   -0.33
?
The logarithm of the n-octanol/water distribution coefficients.
logD7.4:   1.013
?
The logarithm of the n-octanol/water distribution coefficient at pH=7.4.
LogS:   -3.091
?
The logarithm of aqueous solubility value.
Rotatable Bonds:   17.0 Rigid Bonds:   64.0
TPSA:   509.04
?
Topological Polar Surface Area.
H-Bond Acceptor:   32.0
H-Bond Donor:   18.0 Rings:   11.0
Heavy Atoms:   32.0

MedChem Properties

QED Drug-Likeness Score:   0.04 GASA:   1.0
?
GASA represents the probability of being difficult to synthesize, ranging from 0 to 1.
Synthetic Accessibility Score:   7.777 Fsp3:   0.939
MCE-18:   244.75
?
MCE-18 stands for medicinal chemistry evolution.MCE-18≥45 is considered a suitable value.
Lipinski Rule-of-5:   Accepted
Pfizer Rule:   Rejected GSK Rule:   Accepted
Golden Triangle Rule:   Accepted BMS Rule:   1
Chelating Alert:   0 PAINS Alert:   0
Colloidal aggregators:   0.704 Fluc inhibitor:   0.283
?
The fluc inhibitor value is the probability of being fLuc inhibitors, within the range of 0 to 1.
Blue fluorescence:   0.004
?
The blue fluorescence value is the probability of being blue fluorescence, within the range of 0 to 1
Green fluorescence:   0.0
?
The green fluorescence value is the probability of being green fluorescence, within the range of 0 to 1
Reactive compounds:   0.441 Promiscuous compounds:   0.142

ADMET Properties (ADMETlab3.0)

ADMET: Absorption

Caco-2 Permeability:   -6.965 MDCK Permeability:   -4.945
Pgp-inhibitor:   0.0 Pgp-substrate:   0.97
PAMPA:   1.0
?
The experimental data for Peff was logarithmically transformed (logPeff). Molecules with log Peff values below 2.0 were classified as low-permeability (Category 0), while those with log Peff values exceeding 2.5 were classified as high-permeability (Category 1).
Human Intestinal Absorption (HIA):   0.999
20% Bioavailability (F20%):   0.996 30% Bioavailability (F30%):   1.0
50% Bioavailability (F50%):   1.0

ADMET: Distribution

Blood-Brain-Barrier Penetration (BBB):   0.0 MRP1:   0.906
Plasma Protein Binding (PPB):   56.086% Volume Distribution (VD):   -0.346
Fu: 23.683%
?
The fraction unbound in plasms.
OATP1B1 inhibitor:   0.998
OATP1B3 inhibitor:   0.977 BCRP inhibitor:   0.0
BSEP inhibitor:   0.0

ADMET: Metabolism

CYP1A2-inhibitor:   0.0 CYP1A2-substrate:   0.0
CYP2C19-inhibitor:   0.0 CYP2C19-substrate:   0.0
CYP2C9-inhibitor:   0.0 CYP2C9-substrate:   0.0
CYP2D6-inhibitor:   0.0 CYP2D6-substrate:   0.0
CYP3A4-inhibitor:   0.0 CYP3A4-substrate:   0.0
CYP2B6-substrate:   0.0 CYP2C8-inhibitor:   0.003
HLM stability:   0.0
?
Human liver microsomal (HLM) stability. Category 0: stable+ (HLM > 30 min); Category 1: unstable- (HLM ≤ 30 min). The output value is the probability of human liver microsomal instability, where a value closer to 1 indicates a higher likelihood of instability.

ADMET: Excretion

Clearance (CL):  -1.414 Half-life (T1/2):  5.431

ADMET: Toxicity

hERG Blockers:  0.0 hERG Blockers (10um):  0.001
Human Hepatotoxicity (H-HT):  0.618 Drug-induced Liver Injury (DILI):  0.981
AMES Toxicity:  0.966 Rat Oral Acute Toxicity:  0.0
Maximum Recommended Daily Dose:  0.0 Skin Sensitization:  1.0
Carcinogencity:  0.002 Eye Corrosion:  0.0
Eye Irritation:  0.0 Respiratory Toxicity:  0.0
Drug-induced Neurotoxicity:  0.0 Ototoxicity:  1.0
Hematotoxicity:  0.809 Drug-induced Nephrotoxicity:  1.0
Genotoxicity:  0.243 RPMI-8226 Immunitoxicity:  0.438
A549 Cytotoxicity:  0.91 Hek293 Cytotoxicity:  0.248
BCF:   0.782
?
Bioconcentration factors are used for considering secondary poisoning potential and assessing risks to human health via the food chain. The unit is -log10[(mg/L)/(1000*MW)].
IGC50:   3.384
?
48 hour Tetrahymena pyriformis IGC50. The unit of IGC50 is -log10[(mg/L)/(1000*MW)].
LC50DM:   4.967
?
48 hour Daphnia magna LC50. The unit of LC50DM is -log10[(mg/L)/(1000*MW)].
LC50FM:   3.812
?
96 hour fathead minnow LC50. The unit of LC50FM is -log10[(mg/L)/(1000*MW)].

  Species Source

Organism ID Organism Name Taxonomy Level Family SuperKingdom Isolation Part Collection Location Collection Time Reference
NPO21105 Madhuca longifolia Species Sapotaceae Eukaryota n.a. n.a. n.a. PMID[11141115]
NPO16139 Garcinia lancilimba Species Clusiaceae Eukaryota n.a. bark n.a. PMID[17541202]
NPO18438 Samanea saman Species Fabaceae Eukaryota n.a. n.a. n.a. PMID[21228101]
NPO1856 Tomophagus colossus Species Ganodermataceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO18438 Samanea saman Species Fabaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO21240 Pinus elliottii Species Pinaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO18464 Pilocarpus goudotianus Species Rutaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO21105 Madhuca longifolia Species Sapotaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO20942 Isoplexis isabelliana Species Plantaginaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO16139 Garcinia lancilimba Species Clusiaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO19035 Croton cajucara Species Euphorbiaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO16994 Codiaeum variegatum Species Euphorbiaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO13111 Aplophyllum dubium n.a. n.a. n.a. n.a. n.a. n.a. Database[COCONUT]
NPO7210 Rhizophora mucronata Species Rhizophoraceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO7210 Rhizophora mucronata Species Rhizophoraceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO19035 Croton cajucara Species Euphorbiaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO18464 Pilocarpus goudotianus Species Rutaceae Eukaryota n.a. n.a. n.a. Database[Title]
NPO1856 Tomophagus colossus Species Ganodermataceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO16139 Garcinia lancilimba Species Clusiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO20942 Isoplexis isabelliana Species Plantaginaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO7210 Rhizophora mucronata Species Rhizophoraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO19035 Croton cajucara Species Euphorbiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO21105 Madhuca longifolia Species Sapotaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO16994 Codiaeum variegatum Species Euphorbiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO18438 Samanea saman Species Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO13111 Aplophyllum dubium n.a. n.a. n.a. n.a. n.a. n.a. Database[UNPD]
NPO21240 Pinus elliottii Species Pinaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO18464 Pilocarpus goudotianus Species Rutaceae Eukaryota n.a. n.a. n.a. Database[UNPD]

Note for Reference:
In addition to directly collecting NP source organism data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated them from below databases:
UNPD: Universal Natural Products Database [PMID: 23638153].
StreptomeDB: a database of streptomycetes natural products [PMID: 33051671].
TM-MC: a database of medicinal materials and chemical compounds in Northeast Asian traditional medicine [PMID: 26156871].
TCM@Taiwan: a Traditional Chinese Medicine database [PMID: 21253603].
TCMID: a Traditional Chinese Medicine database [PMID: 29106634].
TCMSP: The traditional Chinese medicine systems pharmacology database and analysis platform [PMID: 24735618].
HerDing: a herb recommendation system to treat diseases using genes and chemicals [PMID: 26980517].
MetaboLights: a metabolomics database [PMID: 27010336].
FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].



  NP Quantity Composition/Concentration

Organism ID Organism Name Organism Material Preparation Organism Part NP Quantity (Standard) NP Quantity (Minimum) NP Quantity (Maximum) Quantity Unit Reference

Note for Reference:
In addition to directly collecting NP quantitative data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated NP quantitative records for specific NP domains (e.g., NPS from foods or herbs) from domain-specific databases. These databases include:
DUKE: Dr. Duke's Phytochemical and Ethnobotanical Databases.
PHENOL EXPLORER: is the first comprehensive database on polyphenol content in foods [PMID: 24103452], its homepage can be accessed at here.
FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].



 Biological Activity

Molecular-level activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference

In vitro activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference

In vivo activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference





 Experimental ADME

Experiment Model Experiment Tissue ADME Type ADME Relation ADME Value ADME Unit Reference





 Experimental Toxicity

Quantitative toxicity

Experiment Model Experiment Organism Toxicity Type Toxicity Relation Toxicity Value Toxicity Unit Reference

Common Abbreviations:
LC: Lethal Concentration; LD: Lethal Dose; LT:Lethal Time; NOAEL: No-observed-adverse-effect Level; BMDL: Benchmark Dose Lower Confidence Limit; BMD: Benchmark Dose; BMC:Benchmark Concentration; LOAEL: Lowest Observed Adverse Effect Level; RfD:Reference Dose; RfC:Reference Concentration; MRL: Minimal Risk Level; MEG: Maximum Exposure Guideline; PAC: Protective Action Criteria

Categorical toxicity labels

Hepatotoxicity Carcinogenicity Mutagenicity Cardiotoxicity Respiratory Toxicity Eye Irritation Endocrine Disruption
Hepatotoxicity Carcinogenicity Mutagenicity Cardiotoxicity Respiratory Toxicity Eye Irritation Endocrine Disruption

Note for Reference:
In addition to directly collecting NP quantitative data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated NP toxicity records from domain-specific databases. These databases include:
ToxValDB: a curated database that compiles quantitative toxicity values for chemicals from diverse public sources to support toxicological research and risk assessment.
TOXRIC: a comprehensive, free-to-access, online database providing toxicological/feature data. The toxicity labels are retrieved from this database. [PMID: 36400569]


  Chemically structural similarity

Similar Active Natural Products in NPASS

Top-200 similar NPs were calculated against the active-NP-set (includes approximately 50,000 NPs with experimentally-derived bioactivity available in NPASS)

Similarity is measured using the Tanimoto coefficient (Tc) , which compares the binary fingerprints of two molecules. Tc is calculated as the intersection divided by the union of '1' bits in the fingerprints, ranging from 0 to 1, with 1 indicating highest similarity.

●  The left chart: Distribution of similarity level between NPC210926 and all remaining natural products in the NPASS database.
●  The right table: Most similar natural products (Tc>=0.5 or Top200).

Similarity Score Similarity Level Natural Product ID
0.7477 Intermediate Similarity NPC131469
0.7411 Intermediate Similarity NPC95437
0.7368 Intermediate Similarity NPC120116
0.7345 Intermediate Similarity NPC114692
0.7345 Intermediate Similarity NPC236657
0.7297 Intermediate Similarity NPC251768
0.7295 Intermediate Similarity NPC258617
0.7119 Intermediate Similarity NPC313110
0.693 Remote Similarity NPC118440
0.6838 Remote Similarity NPC301449
0.6838 Remote Similarity NPC601290
0.6786 Remote Similarity NPC473884
0.6639 Remote Similarity NPC187618
0.6587 Remote Similarity NPC57484
0.6557 Remote Similarity NPC300419
0.6522 Remote Similarity NPC192791
0.6423 Remote Similarity NPC76972
0.6423 Remote Similarity NPC469782
0.6423 Remote Similarity NPC204414
0.6417 Remote Similarity NPC218954
0.6356 Remote Similarity NPC475591
0.6356 Remote Similarity NPC236870
0.6232 Remote Similarity NPC475368
0.622 Remote Similarity NPC100639
0.6207 Remote Similarity NPC157868
0.6198 Remote Similarity NPC114484
0.6183 Remote Similarity NPC65105
0.6179 Remote Similarity NPC187290
0.6154 Remote Similarity NPC469946
0.6148 Remote Similarity NPC481079
0.6116 Remote Similarity NPC64715
0.6107 Remote Similarity NPC470876
0.6102 Remote Similarity NPC242840
0.6102 Remote Similarity NPC112352
0.6098 Remote Similarity NPC241909
0.6094 Remote Similarity NPC470218
0.609 Remote Similarity NPC298034
0.609 Remote Similarity NPC71065
0.6087 Remote Similarity NPC12288
0.6061 Remote Similarity NPC293330
0.6045 Remote Similarity NPC70809
0.6031 Remote Similarity NPC473452
0.6016 Remote Similarity NPC155410
0.6016 Remote Similarity NPC135904
0.5954 Remote Similarity NPC484061
0.5954 Remote Similarity NPC484062
0.595 Remote Similarity NPC162574
0.5935 Remote Similarity NPC281148
0.5906 Remote Similarity NPC60557
0.5906 Remote Similarity NPC67857
0.5902 Remote Similarity NPC475504
0.5896 Remote Similarity NPC202828
0.5896 Remote Similarity NPC119592
0.5868 Remote Similarity NPC40775
0.5868 Remote Similarity NPC159309
0.5868 Remote Similarity NPC11551
0.5868 Remote Similarity NPC46665
0.5868 Remote Similarity NPC86222
0.5859 Remote Similarity NPC192600
0.5846 Remote Similarity NPC471550
0.5766 Remote Similarity NPC224381
0.5763 Remote Similarity NPC235405
0.575 Remote Similarity NPC475171
0.5726 Remote Similarity NPC302887
0.5714 Remote Similarity NPC249848
0.5714 Remote Similarity NPC107966
0.5704 Remote Similarity NPC484059
0.5704 Remote Similarity NPC484060
0.5704 Remote Similarity NPC43550
0.5672 Remote Similarity NPC473645
0.5667 Remote Similarity NPC295371
0.5667 Remote Similarity NPC472949
0.5662 Remote Similarity NPC305981
0.5652 Remote Similarity NPC478823
0.5646 Remote Similarity NPC124828
0.5645 Remote Similarity NPC222580
0.5645 Remote Similarity NPC297263
0.5639 Remote Similarity NPC82380
0.5639 Remote Similarity NPC244296
0.563 Remote Similarity NPC25605
0.562 Remote Similarity NPC261506
0.562 Remote Similarity NPC4328
0.5615 Remote Similarity NPC123522
0.561 Remote Similarity NPC102439
0.561 Remote Similarity NPC480475
0.5591 Remote Similarity NPC295823
0.5591 Remote Similarity NPC174720
0.5591 Remote Similarity NPC160452
0.5591 Remote Similarity NPC475467
0.5583 Remote Similarity NPC482748
0.5565 Remote Similarity NPC63159
0.5556 Remote Similarity NPC286457
0.5547 Remote Similarity NPC36831
0.554 Remote Similarity NPC484063
0.554 Remote Similarity NPC484064
0.5538 Remote Similarity NPC475287
0.5528 Remote Similarity NPC104071
0.5528 Remote Similarity NPC30735
0.5528 Remote Similarity NPC309714
0.5526 Remote Similarity NPC485563
0.5517 Remote Similarity NPC209894
0.5515 Remote Similarity NPC41061
0.5515 Remote Similarity NPC227551
0.5507 Remote Similarity NPC11577
0.5507 Remote Similarity NPC141600
0.55 Remote Similarity NPC250247
0.5489 Remote Similarity NPC475160
0.5489 Remote Similarity NPC473714
0.5469 Remote Similarity NPC480474
0.5462 Remote Similarity NPC213952
0.5462 Remote Similarity NPC48499
0.5461 Remote Similarity NPC478825
0.5455 Remote Similarity NPC473373
0.5455 Remote Similarity NPC475899
0.5448 Remote Similarity NPC47995
0.544 Remote Similarity NPC235438
0.5435 Remote Similarity NPC236638
0.5435 Remote Similarity NPC294453
0.5429 Remote Similarity NPC478824
0.5426 Remote Similarity NPC104137
0.5426 Remote Similarity NPC31838
0.5426 Remote Similarity NPC26626
0.5426 Remote Similarity NPC481078
0.542 Remote Similarity NPC268184
0.5398 Remote Similarity NPC237503
0.5391 Remote Similarity NPC477075
0.5391 Remote Similarity NPC477079
0.5379 Remote Similarity NPC79643
0.5373 Remote Similarity NPC191827
0.5364 Remote Similarity NPC220838
0.536 Remote Similarity NPC10607
0.5349 Remote Similarity NPC96641
0.5349 Remote Similarity NPC480473
0.5349 Remote Similarity NPC163183
0.5344 Remote Similarity NPC471962
0.5333 Remote Similarity NPC277212
0.5333 Remote Similarity NPC30279
0.5328 Remote Similarity NPC150400
0.5317 Remote Similarity NPC139044
0.5299 Remote Similarity NPC482736
0.5299 Remote Similarity NPC482738
0.5298 Remote Similarity NPC485564
0.5294 Remote Similarity NPC214484
0.5294 Remote Similarity NPC487505
0.5286 Remote Similarity NPC302543
0.5276 Remote Similarity NPC31193
0.5271 Remote Similarity NPC477076
0.5267 Remote Similarity NPC75287
0.5267 Remote Similarity NPC815
0.5259 Remote Similarity NPC283417
0.5259 Remote Similarity NPC200049
0.5255 Remote Similarity NPC470518
0.5255 Remote Similarity NPC476068
0.5255 Remote Similarity NPC21691
0.525 Remote Similarity NPC164194
0.525 Remote Similarity NPC29069
0.5246 Remote Similarity NPC174679
0.5246 Remote Similarity NPC279554
0.5241 Remote Similarity NPC485562
0.5234 Remote Similarity NPC486563
0.5231 Remote Similarity NPC488564
0.5221 Remote Similarity NPC167383
0.5221 Remote Similarity NPC488560
0.52 Remote Similarity NPC75417
0.5197 Remote Similarity NPC45606
0.5185 Remote Similarity NPC257211
0.5185 Remote Similarity NPC123199
0.5182 Remote Similarity NPC481080
0.518 Remote Similarity NPC225791
0.5128 Remote Similarity NPC224121
0.5122 Remote Similarity NPC475516
0.5122 Remote Similarity NPC59804
0.5118 Remote Similarity NPC44716
0.5118 Remote Similarity NPC164389
0.5118 Remote Similarity NPC148603
0.5115 Remote Similarity NPC80986
0.5115 Remote Similarity NPC477077
0.5115 Remote Similarity NPC477078
0.5111 Remote Similarity NPC133818
0.5111 Remote Similarity NPC165204
0.5109 Remote Similarity NPC46823
0.5106 Remote Similarity NPC481081
0.5106 Remote Similarity NPC477463
0.5079 Remote Similarity NPC223301
0.5079 Remote Similarity NPC171544
0.5076 Remote Similarity NPC469947
0.5076 Remote Similarity NPC480948
0.5075 Remote Similarity NPC252657
0.5075 Remote Similarity NPC88311
0.5074 Remote Similarity NPC480419
0.5072 Remote Similarity NPC181066
0.5072 Remote Similarity NPC85154
0.5071 Remote Similarity NPC484942
0.507 Remote Similarity NPC309223
0.5068 Remote Similarity NPC478822
0.5068 Remote Similarity NPC480422
0.5066 Remote Similarity NPC472268
0.5066 Remote Similarity NPC329893
0.504 Remote Similarity NPC39211
0.504 Remote Similarity NPC488561

Similar Clinical/Approved Drugs

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules.

●  The left chart: Distribution of similarity level between NPC210926 and all drugs/candidates.
●  The right table: Most similar clinical/approved drugs (Tc>=0.5 or Top200).

Similarity Score Similarity Level Drug ID Developmental Stage
NPD

Bioactivity similarity

  Bioactivity similarity

Similar Natural Products in NPASS

Similarity level is defined by Bioactivity similarity was calculated based on bioactivity descriptors of compounds. The bioactivity descriptors were calculated by a recently developed AI algorithm Chemical Checker (CC) [Nature Biotechnology, 38:1087–1096, 2020; Nature Communications, 12:3932, 2021], which evaluated bioactivity similarities at five levels:
A: chemistry similarity;
B: biological targets similarity;
C: networks similarity;
D: cell-based bioactivity similarity;
E: similarity based on clinical data.
Those 5 categories of CC bioactivity descriptors were calculated and then subjected to manifold projection using UMAP algorithm, to project all NPs on a 2-Dimensional space. The current NP was highlighted with a small circle in the 2-D map. Below figures: left-to-right, A-to-E.

A: chemistry similarity
B: biological targets similarity
C: networks similarity
D: cell-based bioactivity similarity
E: similarity based on clinical data