Structure

Physi-Chem Properties

Molecular Weight:  352.18
Volume:  361.535
LogP:  3.394
LogD:  3.147
LogS:  -3.287
# Rotatable Bonds:  2
TPSA:  54.56
# H-Bond Aceptor:  5
# H-Bond Donor:  1
# Rings:  5
# Heavy Atoms:  5

MedChem Properties

QED Drug-Likeness Score:  0.801
Synthetic Accessibility Score:  3.936
Fsp3:  0.476
Lipinski Rule-of-5:  Accepted
Pfizer Rule:  Rejected
GSK Rule:  Accepted
BMS Rule:  0
Golden Triangle Rule:  Accepted
Chelating Alert:  0
PAINS Alert:  0

ADMET Properties (ADMETlab2.0)

ADMET: Absorption

Caco-2 Permeability:  -4.856
MDCK Permeability:  1.4090774129726924e-05
Pgp-inhibitor:  0.017
Pgp-substrate:  0.001
Human Intestinal Absorption (HIA):  0.006
20% Bioavailability (F20%):  0.006
30% Bioavailability (F30%):  0.056

ADMET: Distribution

Blood-Brain-Barrier Penetration (BBB):  0.993
Plasma Protein Binding (PPB):  85.50072479248047%
Volume Distribution (VD):  2.153
Pgp-substrate:  11.395081520080566%

ADMET: Metabolism

CYP1A2-inhibitor:  0.668
CYP1A2-substrate:  0.943
CYP2C19-inhibitor:  0.475
CYP2C19-substrate:  0.85
CYP2C9-inhibitor:  0.191
CYP2C9-substrate:  0.256
CYP2D6-inhibitor:  0.942
CYP2D6-substrate:  0.894
CYP3A4-inhibitor:  0.863
CYP3A4-substrate:  0.914

ADMET: Excretion

Clearance (CL):  4.723
Half-life (T1/2):  0.18

ADMET: Toxicity

hERG Blockers:  0.911
Human Hepatotoxicity (H-HT):  0.6
Drug-inuced Liver Injury (DILI):  0.07
AMES Toxicity:  0.754
Rat Oral Acute Toxicity:  0.957
Maximum Recommended Daily Dose:  0.959
Skin Sensitization:  0.098
Carcinogencity:  0.972
Eye Corrosion:  0.003
Eye Irritation:  0.013
Respiratory Toxicity:  0.976

Download Data

Data Type Select
General Info & Identifiers & Properties  
Structure MOL file  
Source Organisms  
Biological Activities  
Similar NPs/Drugs  

  Natural Product: NPC312870

Natural Product ID:  NPC312870
Common Name*:   GRTOGORTSDXSFK-UHFFFAOYSA-N
IUPAC Name:   n.a.
Synonyms:  
Standard InCHIKey:  GRTOGORTSDXSFK-UHFFFAOYSA-N
Standard InCHI:  InChI=1S/C21H24N2O3/c1-12-16-10-23-8-7-14-13-5-3-4-6-18(13)22-20(14)19(23)9-15(16)17(11-26-12)21(24)25-2/h3-6,11-12,15-16,19,22H,7-10H2,1-2H3
SMILES:  COC(=O)C1=COC(C2C1CC1N(C2)CCc2c1[nH]c1c2cccc1)C
Synthetic Gene Cluster:   n.a.
ChEMBL Identifier:   CHEMBL1604074
PubChem CID:   251561
Chemical Classification**:  
  • CHEMONTID:0000000 [Organic compounds]
    • [CHEMONTID:0000279] Alkaloids and derivatives
      • [CHEMONTID:0001786] Yohimbine alkaloids

*Note: the InCHIKey will be temporarily assigned as the "Common Name" if no IUPAC name or alternative short name is available.
**Note: the Chemical Classification was calculated by NPClassifier Version 1.5. Reference: PMID:34662515.

  Species Source

Organism ID Organism Name Taxonomy Level Family SuperKingdom Isolation Part Collection Location Collection Time Reference
NPO25993 Atropa belladonna Species Solanaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO25993 Atropa belladonna Species Solanaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO25993 Atropa belladonna Species Solanaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO25993 Atropa belladonna Species Solanaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO25993 Atropa belladonna Species Solanaceae Eukaryota n.a. n.a. n.a. Database[UNPD]

☑ Note for Reference:
In addition to directly collecting NP source organism data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated them from below databases:
UNPD: Universal Natural Products Database [PMID: 23638153].
StreptomeDB: a database of streptomycetes natural products [PMID: 33051671].
TM-MC: a database of medicinal materials and chemical compounds in Northeast Asian traditional medicine [PMID: 26156871].
TCM@Taiwan: a Traditional Chinese Medicine database [PMID: 21253603].
TCMID: a Traditional Chinese Medicine database [PMID: 29106634].
TCMSP: The traditional Chinese medicine systems pharmacology database and analysis platform [PMID: 24735618].
HerDing: a herb recommendation system to treat diseases using genes and chemicals [PMID: 26980517].
MetaboLights: a metabolomics database [PMID: 27010336].
FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].

  NP Quantity Composition/Concentration

Organism ID NP ID Organism Material Preparation Organism Part NP Quantity (Standard) NP Quantity (Minimum) NP Quantity (Maximum) Quantity Unit Reference

☑ Note for Reference:
In addition to directly collecting NP quantitative data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated NP quantitative records for specific NP domains (e.g., NPS from foods or herbs) from domain-specific databases. These databases include:
DUKE: Dr. Duke's Phytochemical and Ethnobotanical Databases.
PHENOL EXPLORER: is the first comprehensive database on polyphenol content in foods [PMID: 24103452], its homepage can be accessed at here.
FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].

  Biological Activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference
NPT149 Individual Protein Endoplasmic reticulum-associated amyloid beta-peptide-binding protein Homo sapiens Potency = 31622.8 nM PMID[476963]
NPT1197 Individual Protein Huntingtin Homo sapiens Potency = 11220.2 nM PMID[476963]
NPT1226 Individual Protein Caspase-7 Homo sapiens Potency = 25118.9 nM PMID[476963]
NPT3 Individual Protein Thioredoxin glutathione reductase Schistosoma mansoni Potency = 79432.8 nM PMID[476963]
NPT277 Individual Protein Caspase-1 Homo sapiens Potency = 25118.9 nM PMID[476963]
NPT532 Individual Protein Lysine-specific demethylase 4A Homo sapiens Potency n.a. 79432.8 nM PMID[476963]
NPT1005 Individual Protein Tumor susceptibility gene 101 protein Homo sapiens Potency n.a. 70794.6 nM PMID[476963]
NPT5 Individual Protein Histone-lysine N-methyltransferase, H3 lysine-9 specific 3 Homo sapiens Potency n.a. 44668.4 nM PMID[476963]
NPT63 Individual Protein Bromodomain adjacent to zinc finger domain protein 2B Homo sapiens Potency n.a. 89125.1 nM PMID[476963]
NPT367 Cell Line MDA-N Homo sapiens GI50 n.a. 100000.0 nM PMID[476965]
NPT367 Cell Line MDA-N Homo sapiens GI50 n.a. 31550.05 nM PMID[476966]
NPT368 Cell Line SN12C Homo sapiens GI50 n.a. 17906.06 nM PMID[476966]
NPT370 Cell Line NCI-H23 Homo sapiens GI50 n.a. 100000.0 nM PMID[476965]
NPT369 Cell Line ACHN Homo sapiens GI50 n.a. 32062.69 nM PMID[476966]
NPT370 Cell Line NCI-H23 Homo sapiens GI50 n.a. 33728.73 nM PMID[476966]
NPT368 Cell Line SN12C Homo sapiens GI50 n.a. 100000.0 nM PMID[476965]
NPT372 Cell Line HOP-92 Homo sapiens GI50 n.a. 18323.14 nM PMID[476966]
NPT369 Cell Line ACHN Homo sapiens GI50 n.a. 100000.0 nM PMID[476965]
NPT371 Cell Line UO-31 Homo sapiens GI50 n.a. 20844.91 nM PMID[476966]
NPT371 Cell Line UO-31 Homo sapiens GI50 n.a. 100000.0 nM PMID[476965]
NPT372 Cell Line HOP-92 Homo sapiens GI50 n.a. 100000.0 nM PMID[476965]
NPT90 Cell Line DU-145 Homo sapiens GI50 n.a. 33651.16 nM PMID[476966]
NPT116 Cell Line HL-60 Homo sapiens GI50 n.a. 17458.22 nM PMID[476966]
NPT116 Cell Line HL-60 Homo sapiens GI50 n.a. 46131.76 nM PMID[476965]
NPT90 Cell Line DU-145 Homo sapiens GI50 n.a. 100000.0 nM PMID[476965]
NPT373 Cell Line SK-MEL-5 Homo sapiens GI50 n.a. 22594.36 nM PMID[476966]
NPT374 Cell Line SF-539 Homo sapiens GI50 n.a. 22387.21 nM PMID[476966]
NPT374 Cell Line SF-539 Homo sapiens GI50 n.a. 100000.0 nM PMID[476965]
NPT375 Cell Line Malme-3M Homo sapiens GI50 n.a. 49545.02 nM PMID[476965]
NPT373 Cell Line SK-MEL-5 Homo sapiens GI50 n.a. 100000.0 nM PMID[476965]
NPT375 Cell Line Malme-3M Homo sapiens GI50 n.a. 14421.15 nM PMID[476966]
NPT376 Cell Line A498 Homo sapiens GI50 n.a. 21086.28 nM PMID[476966]
NPT377 Cell Line OVCAR-3 Homo sapiens GI50 n.a. 24210.29 nM PMID[476966]
NPT112 Cell Line MOLT-4 Homo sapiens GI50 n.a. 10964.78 nM PMID[476966]
NPT376 Cell Line A498 Homo sapiens GI50 n.a. 74816.95 nM PMID[476965]
NPT377 Cell Line OVCAR-3 Homo sapiens GI50 n.a. 100000.0 nM PMID[476965]
NPT379 Cell Line HOP-62 Homo sapiens GI50 n.a. 100000.0 nM PMID[476965]
NPT112 Cell Line MOLT-4 Homo sapiens GI50 n.a. 28313.92 nM PMID[476965]
NPT378 Cell Line NCI/ADR-RES Homo sapiens GI50 n.a. 22646.44 nM PMID[476966]
NPT379 Cell Line HOP-62 Homo sapiens GI50 n.a. 55080.77 nM PMID[476966]
NPT381 Cell Line OVCAR-8 Homo sapiens GI50 n.a. 18620.87 nM PMID[476966]
NPT378 Cell Line NCI/ADR-RES Homo sapiens GI50 n.a. 100000.0 nM PMID[476965]
NPT380 Cell Line U-251 Homo sapiens GI50 n.a. 100000.0 nM PMID[476965]
NPT380 Cell Line U-251 Homo sapiens GI50 n.a. 24603.68 nM PMID[476966]
NPT383 Cell Line SNB-19 Homo sapiens GI50 n.a. 84527.88 nM PMID[476966]
NPT381 Cell Line OVCAR-8 Homo sapiens GI50 n.a. 100000.0 nM PMID[476965]
NPT382 Cell Line OVCAR-5 Homo sapiens GI50 n.a. 100000.0 nM PMID[476965]
NPT382 Cell Line OVCAR-5 Homo sapiens GI50 n.a. 100000.0 nM PMID[476966]
NPT383 Cell Line SNB-19 Homo sapiens GI50 n.a. 100000.0 nM PMID[476965]
NPT82 Cell Line MDA-MB-231 Homo sapiens GI50 n.a. 21232.44 nM PMID[476966]
NPT385 Cell Line SR Homo sapiens GI50 n.a. 27797.13 nM PMID[476965]
NPT82 Cell Line MDA-MB-231 Homo sapiens GI50 n.a. 100000.0 nM PMID[476965]
NPT384 Cell Line TK-10 Homo sapiens GI50 n.a. 27669.42 nM PMID[476966]
NPT385 Cell Line SR Homo sapiens GI50 n.a. 12618.28 nM PMID[476966]
NPT384 Cell Line TK-10 Homo sapiens GI50 n.a. 100000.0 nM PMID[476965]
NPT323 Cell Line SW-620 Homo sapiens GI50 n.a. 100000.0 nM PMID[476965]
NPT323 Cell Line SW-620 Homo sapiens GI50 n.a. 22750.97 nM PMID[476966]
NPT386 Cell Line KM12 Homo sapiens GI50 n.a. 17864.88 nM PMID[476966]
NPT455 Cell Line NCI-H522 Homo sapiens GI50 n.a. 23120.65 nM PMID[476966]
NPT455 Cell Line NCI-H522 Homo sapiens GI50 n.a. 91201.08 nM PMID[476965]
NPT387 Cell Line M14 Homo sapiens GI50 n.a. 100000.0 nM PMID[476965]
NPT387 Cell Line M14 Homo sapiens GI50 n.a. 38370.72 nM PMID[476966]
NPT388 Cell Line NCI-H322M Homo sapiens GI50 n.a. 46881.34 nM PMID[476966]
NPT386 Cell Line KM12 Homo sapiens GI50 n.a. 100000.0 nM PMID[476965]
NPT388 Cell Line NCI-H322M Homo sapiens GI50 n.a. 100000.0 nM PMID[476965]
NPT389 Cell Line RPMI-8226 Homo sapiens GI50 n.a. 14588.14 nM PMID[476966]
NPT389 Cell Line RPMI-8226 Homo sapiens GI50 n.a. 69023.98 nM PMID[476965]
NPT456 Cell Line OVCAR-4 Homo sapiens GI50 n.a. 100000.0 nM PMID[476965]
NPT456 Cell Line OVCAR-4 Homo sapiens GI50 n.a. 25409.73 nM PMID[476966]
NPT390 Cell Line LOX IMVI Homo sapiens GI50 n.a. 18450.15 nM PMID[476966]
NPT390 Cell Line LOX IMVI Homo sapiens GI50 n.a. 100000.0 nM PMID[476965]
NPT457 Cell Line BT-549 Homo sapiens GI50 n.a. 100000.0 nM PMID[476965]
NPT457 Cell Line BT-549 Homo sapiens GI50 n.a. 27989.81 nM PMID[476966]
NPT147 Cell Line SK-MEL-2 Homo sapiens GI50 n.a. 19952.62 nM PMID[476966]
NPT147 Cell Line SK-MEL-2 Homo sapiens GI50 n.a. 100000.0 nM PMID[476965]
NPT391 Cell Line HCC 2998 Homo sapiens GI50 n.a. 20653.8 nM PMID[476966]
NPT81 Cell Line A549 Homo sapiens GI50 n.a. 37583.74 nM PMID[476966]
NPT81 Cell Line A549 Homo sapiens GI50 n.a. 100000.0 nM PMID[476965]
NPT391 Cell Line HCC 2998 Homo sapiens GI50 n.a. 100000.0 nM PMID[476965]
NPT393 Cell Line HCT-116 Homo sapiens GI50 n.a. 19010.78 nM PMID[476966]
NPT148 Cell Line HCT-15 Homo sapiens GI50 n.a. 30060.76 nM PMID[476966]
NPT148 Cell Line HCT-15 Homo sapiens GI50 n.a. 100000.0 nM PMID[476965]
NPT394 Cell Line EKVX Homo sapiens GI50 n.a. 17782.79 nM PMID[476966]
NPT393 Cell Line HCT-116 Homo sapiens GI50 n.a. 100000.0 nM PMID[476965]
NPT395 Cell Line SF-268 Homo sapiens GI50 n.a. 54075.43 nM PMID[476966]
NPT395 Cell Line SF-268 Homo sapiens GI50 n.a. 100000.0 nM PMID[476965]
NPT394 Cell Line EKVX Homo sapiens GI50 n.a. 100000.0 nM PMID[476965]
NPT306 Cell Line PC-3 Homo sapiens GI50 n.a. 23933.16 nM PMID[476966]
NPT83 Cell Line MCF7 Homo sapiens GI50 n.a. 32062.69 nM PMID[476966]
NPT83 Cell Line MCF7 Homo sapiens GI50 n.a. 100000.0 nM PMID[476965]
NPT306 Cell Line PC-3 Homo sapiens GI50 n.a. 100000.0 nM PMID[476965]
NPT146 Cell Line SK-OV-3 Homo sapiens GI50 n.a. 58748.94 nM PMID[476966]
NPT396 Cell Line T47D Homo sapiens GI50 n.a. 16557.7 nM PMID[476966]
NPT397 Cell Line NCI-H460 Homo sapiens GI50 n.a. 23988.33 nM PMID[476966]
NPT146 Cell Line SK-OV-3 Homo sapiens GI50 n.a. 100000.0 nM PMID[476965]
NPT396 Cell Line T47D Homo sapiens GI50 n.a. 100000.0 nM PMID[476965]
NPT398 Cell Line UACC-62 Homo sapiens GI50 n.a. 24378.11 nM PMID[476966]
NPT398 Cell Line UACC-62 Homo sapiens GI50 n.a. 100000.0 nM PMID[476965]
NPT308 Cell Line CAKI-1 Homo sapiens GI50 n.a. 21183.61 nM PMID[476966]
NPT397 Cell Line NCI-H460 Homo sapiens GI50 n.a. 100000.0 nM PMID[476965]
NPT399 Cell Line SF-295 Homo sapiens GI50 n.a. 30619.63 nM PMID[476966]
NPT308 Cell Line CAKI-1 Homo sapiens GI50 n.a. 100000.0 nM PMID[476965]
NPT400 Cell Line MDA-MB-435 Homo sapiens GI50 n.a. 52119.47 nM PMID[476966]
NPT400 Cell Line MDA-MB-435 Homo sapiens GI50 n.a. 100000.0 nM PMID[476965]
NPT399 Cell Line SF-295 Homo sapiens GI50 n.a. 72945.75 nM PMID[476965]
NPT458 Cell Line IGROV-1 Homo sapiens GI50 n.a. 22130.95 nM PMID[476966]
NPT401 Cell Line 786-0 Homo sapiens GI50 n.a. 18793.17 nM PMID[476966]
NPT458 Cell Line IGROV-1 Homo sapiens GI50 n.a. 100000.0 nM PMID[476965]
NPT402 Cell Line Hs-578T Homo sapiens GI50 n.a. 48977.88 nM PMID[476965]
NPT402 Cell Line Hs-578T Homo sapiens GI50 n.a. 26001.6 nM PMID[476966]
NPT401 Cell Line 786-0 Homo sapiens GI50 n.a. 54827.7 nM PMID[476965]
NPT403 Cell Line UACC-257 Homo sapiens GI50 n.a. 34197.94 nM PMID[476966]
NPT404 Cell Line CCRF-CEM Homo sapiens GI50 n.a. 50466.13 nM PMID[476965]
NPT404 Cell Line CCRF-CEM Homo sapiens GI50 n.a. 20137.24 nM PMID[476966]
NPT2971 Individual Protein DNA dC->dU-editing enzyme APOBEC-3F Homo sapiens Potency n.a. 14125.4 nM PMID[476963]
NPT403 Cell Line UACC-257 Homo sapiens GI50 n.a. 100000.0 nM PMID[476965]
NPT139 Cell Line HT-29 Homo sapiens GI50 n.a. 13772.09 nM PMID[476966]
NPT405 Cell Line NCI-H226 Homo sapiens GI50 n.a. 3491.4 nM PMID[476966]
NPT405 Cell Line NCI-H226 Homo sapiens GI50 n.a. 100000.0 nM PMID[476965]
NPT406 Cell Line RXF 393 Homo sapiens GI50 n.a. 17298.16 nM PMID[476966]
NPT139 Cell Line HT-29 Homo sapiens GI50 n.a. 100000.0 nM PMID[476965]
NPT170 Cell Line SK-MEL-28 Homo sapiens GI50 n.a. 100000.0 nM PMID[476965]
NPT170 Cell Line SK-MEL-28 Homo sapiens GI50 n.a. 16106.46 nM PMID[476966]
NPT407 Cell Line COLO 205 Homo sapiens GI50 n.a. 18197.01 nM PMID[476966]
NPT406 Cell Line RXF 393 Homo sapiens GI50 n.a. 100000.0 nM PMID[476965]
NPT407 Cell Line COLO 205 Homo sapiens GI50 n.a. 100000.0 nM PMID[476965]
NPT2808 Individual Protein Kelch-like ECH-associated protein 1 Homo sapiens Max_Activity_Concent n.a. 26.0 uM PMID[476964]
NPT156 Individual Protein Sphingomyelin phosphodiesterase Homo sapiens Potency n.a. 31622.8 nM PMID[476963]
NPT105 Individual Protein Muscleblind-like protein 1 Homo sapiens Potency n.a. 12589.3 nM PMID[476963]
NPT49 Individual Protein DNA-(apurinic or apyrimidinic site) lyase Homo sapiens Potency n.a. 3548.1 nM PMID[476963]
NPT161 Individual Protein Rap guanine nucleotide exchange factor 4 Homo sapiens Potency n.a. 35481.3 nM PMID[476963]
NPT1040 Individual Protein Human immunodeficiency virus type 1 Tat protein Human immunodeficiency virus type 1 group M subtype B (isolate HXB2)(HIV-1) IC50 n.a. 7635.0 nM PMID[476963]
NPT197 Protein-Protein Interaction Menin/Histone-lysine N-methyltransferase MLL Homo sapiens Potency = 14125.4 nM PMID[476963]
NPT2 Others Unspecified Potency = 25118.9 nM PMID[476963]
NPT21702 PROTEIN-PROTEIN INTERACTION Importin subunit beta-1/Snurportin-1 Homo sapiens Potency n.a. 100000.0 nM PMID[476963]
NPT22155 PROTEIN-PROTEIN INTERACTION Keap1/Nrf2 Homo sapiens AC50 > 52000.0 nM PMID[476964]
NPT8 Individual Protein DNA polymerase iota Homo sapiens Potency n.a. 89125.1 nM PMID[476963]
NPT20798 PROTEIN COMPLEX GTP-binding nuclear protein Ran/Importin subunit beta-1/Snurportin-1 Homo sapiens Potency n.a. 31622.8 nM PMID[476963]
NPT6 Organism Plasmodium falciparum Plasmodium falciparum Potency n.a. 14715.7 nM PMID[476963]
NPT755 Individual Protein Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 Homo sapiens Potency n.a. 35481.3 nM PMID[476963]
NPT25336 SINGLE PROTEIN Glutathione-S-transferase Schistosoma japonicum IC50 > 100000.0 nM PMID[476963]
NPT2 Others Unspecified IC50 n.a. 17950.0 nM PMID[476963]
NPT20556 SINGLE PROTEIN Replicase polyprotein 1ab Severe acute respiratory syndrome coronavirus 2 Inhibition = 21.37 % PMID[476967]
NPT20555 ORGANISM SARS-CoV-2 Severe acute respiratory syndrome coronavirus 2 Inhibition = -0.03 % PMID[476968]
NPT20555 ORGANISM SARS-CoV-2 Severe acute respiratory syndrome coronavirus 2 IC50 > 20000.0 nM PMID[476969]
NPT20555 ORGANISM SARS-CoV-2 Severe acute respiratory syndrome coronavirus 2 IC50 > 19952.62 nM PMID[476969]

☑ Note for Activity Records:
☉ The quantitative biological activities were primarily integrated from ChEMBL (Version-30) database and were also directly collected from PubMed literature. PubMed PMID was provided as the reference link for each activity record.

  Chemically structural similarity: I. Similar Active Natural Products in NPASS

Top-200 similar NPs were calculated against the active-NP-set (includes 4,3285 NPs with experimentally-derived bioactivity available in NPASS)

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules. Tc lies between [0, 1] where '1' indicates the highest similarity. What is Tanimoto coefficient

●  The left chart: Distribution of similarity level between NPC312870 and all remaining natural products in the NPASS database.
●  The right table: Most similar natural products (Tc>=0.56 or Top200).

Similarity Score Similarity Level Natural Product ID
1.0 High Similarity NPC294909
1.0 High Similarity NPC128265
1.0 High Similarity NPC254240
1.0 High Similarity NPC199851
0.9435 High Similarity NPC196251
0.9435 High Similarity NPC111602
0.9435 High Similarity NPC63199
0.9435 High Similarity NPC102338
0.9274 High Similarity NPC472112
0.9263 High Similarity NPC221100
0.9263 High Similarity NPC234078
0.9066 High Similarity NPC472113
0.8967 High Similarity NPC19692
0.8967 High Similarity NPC220151
0.8919 High Similarity NPC245916
0.8895 High Similarity NPC238457
0.8894 High Similarity NPC21638
0.8785 High Similarity NPC258480
0.8782 High Similarity NPC82070
0.8737 High Similarity NPC52254
0.8696 High Similarity NPC175474
0.8587 High Similarity NPC66210
0.8586 High Similarity NPC476114
0.8564 High Similarity NPC475271
0.8534 High Similarity NPC81654
0.8534 High Similarity NPC249150
0.8534 High Similarity NPC195461
0.8534 High Similarity NPC49196
0.8534 High Similarity NPC313985
0.8534 High Similarity NPC79129
0.8526 High Similarity NPC52557
0.8492 Intermediate Similarity NPC152768
0.8492 Intermediate Similarity NPC148183
0.8429 Intermediate Similarity NPC50503
0.8408 Intermediate Similarity NPC174788
0.8333 Intermediate Similarity NPC472107
0.8333 Intermediate Similarity NPC79062
0.8324 Intermediate Similarity NPC472108
0.8324 Intermediate Similarity NPC139291
0.8315 Intermediate Similarity NPC469896
0.8307 Intermediate Similarity NPC472097
0.828 Intermediate Similarity NPC472119
0.8245 Intermediate Similarity NPC472323
0.8235 Intermediate Similarity NPC472099
0.8226 Intermediate Similarity NPC143533
0.822 Intermediate Similarity NPC472210
0.822 Intermediate Similarity NPC81802
0.822 Intermediate Similarity NPC247735
0.822 Intermediate Similarity NPC472295
0.822 Intermediate Similarity NPC269886
0.8216 Intermediate Similarity NPC15840
0.8212 Intermediate Similarity NPC271797
0.8212 Intermediate Similarity NPC21174
0.8182 Intermediate Similarity NPC474905
0.8168 Intermediate Similarity NPC55493
0.8158 Intermediate Similarity NPC314333
0.8134 Intermediate Similarity NPC33949
0.8128 Intermediate Similarity NPC472104
0.8119 Intermediate Similarity NPC472291
0.8108 Intermediate Similarity NPC234987
0.8065 Intermediate Similarity NPC219336
0.8063 Intermediate Similarity NPC329858
0.8043 Intermediate Similarity NPC472123
0.8032 Intermediate Similarity NPC472110
0.8032 Intermediate Similarity NPC472109
0.803 Intermediate Similarity NPC476115
0.8011 Intermediate Similarity NPC15573
0.8011 Intermediate Similarity NPC217372
0.8011 Intermediate Similarity NPC183662
0.7981 Intermediate Similarity NPC473105
0.7979 Intermediate Similarity NPC472292
0.7969 Intermediate Similarity NPC469470
0.7969 Intermediate Similarity NPC469501
0.7949 Intermediate Similarity NPC472116
0.7949 Intermediate Similarity NPC472293
0.7919 Intermediate Similarity NPC472296
0.7919 Intermediate Similarity NPC472297
0.7914 Intermediate Similarity NPC326575
0.7906 Intermediate Similarity NPC478077
0.7892 Intermediate Similarity NPC264176
0.7889 Intermediate Similarity NPC162730
0.7884 Intermediate Similarity NPC113626
0.788 Intermediate Similarity NPC317430
0.7879 Intermediate Similarity NPC214428
0.7861 Intermediate Similarity NPC24594
0.7861 Intermediate Similarity NPC472122
0.785 Intermediate Similarity NPC474192
0.785 Intermediate Similarity NPC475720
0.7849 Intermediate Similarity NPC161861
0.7828 Intermediate Similarity NPC241024
0.7826 Intermediate Similarity NPC305984
0.7824 Intermediate Similarity NPC57453
0.7806 Intermediate Similarity NPC289299
0.7806 Intermediate Similarity NPC57994
0.7805 Intermediate Similarity NPC472098
0.78 Intermediate Similarity NPC474116
0.7772 Intermediate Similarity NPC277350
0.7737 Intermediate Similarity NPC187827
0.7737 Intermediate Similarity NPC472105
0.7734 Intermediate Similarity NPC477065
0.7717 Intermediate Similarity NPC475816
0.7713 Intermediate Similarity NPC329688
0.7713 Intermediate Similarity NPC189812
0.771 Intermediate Similarity NPC311906
0.7703 Intermediate Similarity NPC473041
0.7703 Intermediate Similarity NPC96321
0.7659 Intermediate Similarity NPC477548
0.7644 Intermediate Similarity NPC91179
0.7644 Intermediate Similarity NPC477979
0.7642 Intermediate Similarity NPC191489
0.7632 Intermediate Similarity NPC28848
0.7632 Intermediate Similarity NPC145885
0.7632 Intermediate Similarity NPC14113
0.7632 Intermediate Similarity NPC84827
0.7632 Intermediate Similarity NPC14325
0.7629 Intermediate Similarity NPC62749
0.7629 Intermediate Similarity NPC160381
0.7619 Intermediate Similarity NPC281049
0.7609 Intermediate Similarity NPC81229
0.7609 Intermediate Similarity NPC255229
0.7598 Intermediate Similarity NPC284685
0.7588 Intermediate Similarity NPC102592
0.7588 Intermediate Similarity NPC79356
0.7586 Intermediate Similarity NPC165599
0.7586 Intermediate Similarity NPC100734
0.7586 Intermediate Similarity NPC88923
0.7586 Intermediate Similarity NPC315634
0.7581 Intermediate Similarity NPC478078
0.7571 Intermediate Similarity NPC312645
0.7549 Intermediate Similarity NPC132539
0.7548 Intermediate Similarity NPC118940
0.7538 Intermediate Similarity NPC474121
0.7538 Intermediate Similarity NPC235684
0.7536 Intermediate Similarity NPC471304
0.7535 Intermediate Similarity NPC472762
0.7525 Intermediate Similarity NPC249040
0.7524 Intermediate Similarity NPC330009
0.7524 Intermediate Similarity NPC469928
0.7513 Intermediate Similarity NPC71037
0.7512 Intermediate Similarity NPC89508
0.75 Intermediate Similarity NPC476098
0.7487 Intermediate Similarity NPC267885
0.7474 Intermediate Similarity NPC21752
0.7474 Intermediate Similarity NPC19679
0.7474 Intermediate Similarity NPC181138
0.7474 Intermediate Similarity NPC210415
0.7474 Intermediate Similarity NPC298851
0.7474 Intermediate Similarity NPC276993
0.7474 Intermediate Similarity NPC293255
0.7473 Intermediate Similarity NPC194881
0.7453 Intermediate Similarity NPC303658
0.7452 Intermediate Similarity NPC126066
0.7452 Intermediate Similarity NPC234999
0.7451 Intermediate Similarity NPC476874
0.7435 Intermediate Similarity NPC203468
0.7435 Intermediate Similarity NPC110500
0.7435 Intermediate Similarity NPC149155
0.7426 Intermediate Similarity NPC306376
0.7426 Intermediate Similarity NPC67288
0.7412 Intermediate Similarity NPC473800
0.7409 Intermediate Similarity NPC133261
0.7409 Intermediate Similarity NPC248041
0.7409 Intermediate Similarity NPC126709
0.7407 Intermediate Similarity NPC78020
0.7404 Intermediate Similarity NPC478158
0.7404 Intermediate Similarity NPC469743
0.7402 Intermediate Similarity NPC471944
0.7401 Intermediate Similarity NPC88097
0.7398 Intermediate Similarity NPC133003
0.7396 Intermediate Similarity NPC264482
0.7396 Intermediate Similarity NPC203202
0.7391 Intermediate Similarity NPC244741
0.7391 Intermediate Similarity NPC53344
0.7389 Intermediate Similarity NPC74413
0.7387 Intermediate Similarity NPC184680
0.7385 Intermediate Similarity NPC66777
0.7381 Intermediate Similarity NPC475778
0.7376 Intermediate Similarity NPC141454
0.7371 Intermediate Similarity NPC469594
0.7366 Intermediate Similarity NPC260900
0.736 Intermediate Similarity NPC315555
0.736 Intermediate Similarity NPC311858
0.736 Intermediate Similarity NPC141612
0.736 Intermediate Similarity NPC17273
0.736 Intermediate Similarity NPC135601
0.7358 Intermediate Similarity NPC111275
0.7356 Intermediate Similarity NPC475910
0.7354 Intermediate Similarity NPC470785
0.7354 Intermediate Similarity NPC470784
0.7353 Intermediate Similarity NPC329793
0.7351 Intermediate Similarity NPC285469
0.7349 Intermediate Similarity NPC60621
0.7347 Intermediate Similarity NPC228835
0.7346 Intermediate Similarity NPC229348
0.7346 Intermediate Similarity NPC469592
0.7346 Intermediate Similarity NPC471080
0.7343 Intermediate Similarity NPC472111
0.7343 Intermediate Similarity NPC18661
0.7342 Intermediate Similarity NPC477549
0.7339 Intermediate Similarity NPC476491

  Chemically structural similarity: II. Similar Clinical/Approved Drugs

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules.

●  The left chart: Distribution of similarity level between NPC312870 and all drugs/candidates.
●  The right table: Most similar clinical/approved drugs (Tc>=0.56 or Top200).

Similarity Score Similarity Level Drug ID Developmental Stage
1.0 High Similarity NPD4500 Approved
1.0 High Similarity NPD4501 Approved
0.8534 High Similarity NPD4601 Approved
0.8534 High Similarity NPD4600 Approved
0.8158 Intermediate Similarity NPD4499 Approved
0.7837 Intermediate Similarity NPD6770 Approved
0.7833 Intermediate Similarity NPD4506 Discontinued
0.7806 Intermediate Similarity NPD4602 Approved
0.7778 Intermediate Similarity NPD3393 Approved
0.7778 Intermediate Similarity NPD3389 Approved
0.7778 Intermediate Similarity NPD3394 Approved
0.7696 Intermediate Similarity NPD2509 Approved
0.7696 Intermediate Similarity NPD2510 Approved
0.7672 Intermediate Similarity NPD5104 Approved
0.765 Intermediate Similarity NPD6661 Clinical (unspecified phase)
0.7642 Intermediate Similarity NPD7708 Approved
0.7633 Intermediate Similarity NPD6657 Clinical (unspecified phase)
0.76 Intermediate Similarity NPD4987 Clinical (unspecified phase)
0.7598 Intermediate Similarity NPD7956 Approved
0.7598 Intermediate Similarity NPD7955 Approved
0.7586 Intermediate Similarity NPD6176 Phase 1
0.7586 Intermediate Similarity NPD7803 Approved
0.7581 Intermediate Similarity NPD2915 Discontinued
0.7565 Intermediate Similarity NPD2095 Phase 2
0.7565 Intermediate Similarity NPD2094 Phase 2
0.7565 Intermediate Similarity NPD2092 Phase 2
0.755 Intermediate Similarity NPD5003 Discontinued
0.7526 Intermediate Similarity NPD2096 Phase 2
0.7526 Intermediate Similarity NPD2091 Phase 2
0.75 Intermediate Similarity NPD2121 Clinical (unspecified phase)
0.7475 Intermediate Similarity NPD6249 Phase 2
0.7475 Intermediate Similarity NPD6248 Phase 2
0.7475 Intermediate Similarity NPD6630 Clinical (unspecified phase)
0.7474 Intermediate Similarity NPD5728 Clinical (unspecified phase)
0.7451 Intermediate Similarity NPD5721 Clinical (unspecified phase)
0.7443 Intermediate Similarity NPD4885 Approved
0.7438 Intermediate Similarity NPD6479 Discontinued
0.7435 Intermediate Similarity NPD482 Approved
0.7407 Intermediate Similarity NPD2844 Phase 3
0.7398 Intermediate Similarity NPD5075 Discontinued
0.7396 Intermediate Similarity NPD749 Clinical (unspecified phase)
0.7379 Intermediate Similarity NPD5901 Discontinued
0.7374 Intermediate Similarity NPD4334 Discontinued
0.7371 Intermediate Similarity NPD5899 Approved
0.7371 Intermediate Similarity NPD5897 Approved
0.7371 Intermediate Similarity NPD5898 Approved
0.7371 Intermediate Similarity NPD5473 Discontinued
0.7368 Intermediate Similarity NPD4900 Clinical (unspecified phase)
0.736 Intermediate Similarity NPD5444 Phase 1
0.7343 Intermediate Similarity NPD4862 Clinical (unspecified phase)
0.7333 Intermediate Similarity NPD7470 Discontinued
0.733 Intermediate Similarity NPD6739 Clinical (unspecified phase)
0.7321 Intermediate Similarity NPD4520 Approved
0.7299 Intermediate Similarity NPD7594 Clinical (unspecified phase)
0.7292 Intermediate Similarity NPD750 Phase 2
0.729 Intermediate Similarity NPD5632 Approved
0.7273 Intermediate Similarity NPD7947 Clinical (unspecified phase)
0.726 Intermediate Similarity NPD7958 Clinical (unspecified phase)
0.726 Intermediate Similarity NPD7957 Phase 1
0.726 Intermediate Similarity NPD4901 Clinical (unspecified phase)
0.7255 Intermediate Similarity NPD7778 Approved
0.7255 Intermediate Similarity NPD7777 Approved
0.7255 Intermediate Similarity NPD53 Approved
0.7251 Intermediate Similarity NPD6567 Clinical (unspecified phase)
0.725 Intermediate Similarity NPD2565 Phase 2
0.725 Intermediate Similarity NPD2564 Approved
0.7244 Intermediate Similarity NPD2921 Clinical (unspecified phase)
0.723 Intermediate Similarity NPD8112 Clinical (unspecified phase)
0.722 Intermediate Similarity NPD4118 Clinical (unspecified phase)
0.722 Intermediate Similarity NPD3800 Clinical (unspecified phase)
0.7217 Intermediate Similarity NPD5482 Discontinued
0.7214 Intermediate Similarity NPD3785 Clinical (unspecified phase)
0.7212 Intermediate Similarity NPD8115 Approved
0.7212 Intermediate Similarity NPD8114 Approved
0.7188 Intermediate Similarity NPD3006 Discontinued
0.7178 Intermediate Similarity NPD4315 Phase 2
0.7172 Intermediate Similarity NPD6178 Phase 3
0.7172 Intermediate Similarity NPD3436 Approved
0.7171 Intermediate Similarity NPD4397 Phase 1
0.7163 Intermediate Similarity NPD5487 Phase 1
0.7156 Intermediate Similarity NPD6160 Clinical (unspecified phase)
0.715 Intermediate Similarity NPD5293 Phase 2
0.713 Intermediate Similarity NPD8358 Approved
0.713 Intermediate Similarity NPD7878 Phase 2
0.7129 Intermediate Similarity NPD5913 Phase 3
0.7129 Intermediate Similarity NPD3947 Discontinued
0.7129 Intermediate Similarity NPD5912 Clinical (unspecified phase)
0.7123 Intermediate Similarity NPD5072 Discontinued
0.7123 Intermediate Similarity NPD7998 Clinical (unspecified phase)
0.7122 Intermediate Similarity NPD6206 Phase 1
0.712 Intermediate Similarity NPD5744 Clinical (unspecified phase)
0.7118 Intermediate Similarity NPD5483 Clinical (unspecified phase)
0.7113 Intermediate Similarity NPD43 Approved
0.7113 Intermediate Similarity NPD6183 Clinical (unspecified phase)
0.7113 Intermediate Similarity NPD6182 Approved
0.7109 Intermediate Similarity NPD5658 Approved
0.7092 Intermediate Similarity NPD6641 Approved
0.7092 Intermediate Similarity NPD6642 Approved
0.7087 Intermediate Similarity NPD6261 Phase 3
0.7085 Intermediate Similarity NPD3607 Clinical (unspecified phase)
0.7083 Intermediate Similarity NPD8327 Clinical (unspecified phase)
0.7083 Intermediate Similarity NPD8325 Phase 3
0.7083 Intermediate Similarity NPD8326 Phase 3
0.7083 Intermediate Similarity NPD7823 Clinical (unspecified phase)
0.7077 Intermediate Similarity NPD4736 Clinical (unspecified phase)
0.7071 Intermediate Similarity NPD3435 Discontinued
0.7064 Intermediate Similarity NPD6242 Discontinued
0.7062 Intermediate Similarity NPD6838 Clinical (unspecified phase)
0.7056 Intermediate Similarity NPD7455 Approved
0.7056 Intermediate Similarity NPD7454 Approved
0.7054 Intermediate Similarity NPD6263 Clinical (unspecified phase)
0.7053 Intermediate Similarity NPD7621 Clinical (unspecified phase)
0.7048 Intermediate Similarity NPD5426 Phase 3
0.703 Intermediate Similarity NPD1534 Approved
0.7028 Intermediate Similarity NPD7665 Phase 2
0.7028 Intermediate Similarity NPD2916 Discontinued
0.7028 Intermediate Similarity NPD7666 Phase 3
0.7015 Intermediate Similarity NPD4426 Clinical (unspecified phase)
0.7009 Intermediate Similarity NPD5475 Discontinued
0.7 Intermediate Similarity NPD6824 Clinical (unspecified phase)
0.7 Intermediate Similarity NPD8072 Approved
0.6995 Remote Similarity NPD4554 Clinical (unspecified phase)
0.6995 Remote Similarity NPD4643 Clinical (unspecified phase)
0.6995 Remote Similarity NPD4637 Clinical (unspecified phase)
0.699 Remote Similarity NPD7061 Clinical (unspecified phase)
0.6986 Remote Similarity NPD7727 Phase 2
0.6986 Remote Similarity NPD7817 Phase 1
0.6986 Remote Similarity NPD7903 Clinical (unspecified phase)
0.698 Remote Similarity NPD4948 Discontinued
0.6964 Remote Similarity NPD4952 Phase 3
0.6964 Remote Similarity NPD5479 Discontinued
0.6961 Remote Similarity NPD2336 Approved
0.6951 Remote Similarity NPD6165 Phase 2
0.6951 Remote Similarity NPD7730 Approved
0.6951 Remote Similarity NPD6164 Phase 2
0.6951 Remote Similarity NPD7731 Approved
0.6947 Remote Similarity NPD7791 Approved
0.6947 Remote Similarity NPD7952 Approved
0.6947 Remote Similarity NPD7950 Approved
0.6947 Remote Similarity NPD7790 Approved
0.6947 Remote Similarity NPD7953 Approved
0.6947 Remote Similarity NPD7789 Approved
0.6947 Remote Similarity NPD7951 Approved
0.6947 Remote Similarity NPD6741 Clinical (unspecified phase)
0.6946 Remote Similarity NPD7234 Approved
0.6946 Remote Similarity NPD7233 Approved
0.6942 Remote Similarity NPD7618 Phase 3
0.6942 Remote Similarity NPD7619 Phase 3
0.6942 Remote Similarity NPD7944 Discontinued
0.6941 Remote Similarity NPD7194 Discontinued
0.6941 Remote Similarity NPD7404 Approved
0.6938 Remote Similarity NPD5427 Suspended
0.6938 Remote Similarity NPD484 Approved
0.6937 Remote Similarity NPD7271 Approved
0.6934 Remote Similarity NPD3003 Approved
0.6933 Remote Similarity NPD8372 Clinical (unspecified phase)
0.693 Remote Similarity NPD8013 Clinical (unspecified phase)
0.6929 Remote Similarity NPD5450 Discontinued
0.6923 Remote Similarity NPD1325 Approved
0.6923 Remote Similarity NPD1326 Approved
0.6923 Remote Similarity NPD4184 Clinical (unspecified phase)
0.6923 Remote Similarity NPD7946 Pre-registration
0.6919 Remote Similarity NPD2144 Approved
0.6919 Remote Similarity NPD2920 Discontinued
0.6916 Remote Similarity NPD6529 Discontinued
0.6912 Remote Similarity NPD4897 Phase 2
0.6904 Remote Similarity NPD5065 Approved
0.69 Remote Similarity NPD3038 Discontinued
0.6897 Remote Similarity NPD6141 Clinical (unspecified phase)
0.689 Remote Similarity NPD7000 Clinical (unspecified phase)
0.689 Remote Similarity NPD6999 Discontinued
0.6889 Remote Similarity NPD7824 Approved
0.6887 Remote Similarity NPD8283 Approved
0.6887 Remote Similarity NPD8282 Approved
0.6887 Remote Similarity NPD56 Approved
0.6884 Remote Similarity NPD7809 Clinical (unspecified phase)
0.6884 Remote Similarity NPD4076 Approved
0.6884 Remote Similarity NPD4079 Approved
0.6883 Remote Similarity NPD6716 Phase 1
0.6881 Remote Similarity NPD7218 Clinical (unspecified phase)
0.6878 Remote Similarity NPD5592 Clinical (unspecified phase)
0.6875 Remote Similarity NPD6664 Approved
0.6872 Remote Similarity NPD4373 Phase 2
0.6872 Remote Similarity NPD8073 Approved
0.6869 Remote Similarity NPD8399 Phase 1
0.6869 Remote Similarity NPD8423 Phase 2
0.6866 Remote Similarity NPD3319 Phase 1
0.6866 Remote Similarity NPD3318 Approved
0.6866 Remote Similarity NPD3320 Approved
0.6866 Remote Similarity NPD5596 Phase 2
0.6862 Remote Similarity NPD4463 Approved
0.6862 Remote Similarity NPD3835 Phase 3
0.6862 Remote Similarity NPD3833 Phase 3
0.6862 Remote Similarity NPD4462 Approved
0.686 Remote Similarity NPD3324 Clinical (unspecified phase)
0.6858 Remote Similarity NPD7688 Phase 1
0.6857 Remote Similarity NPD8248 Clinical (unspecified phase)
0.6854 Remote Similarity NPD7001 Phase 3
0.6853 Remote Similarity NPD4112 Clinical (unspecified phase)
0.6848 Remote Similarity NPD5020 Approved

  Bioactivity similarity: Similar Natural Products in NPASS

Bioactivity similarity was calculated based on bioactivity descriptors of compounds. The bioactivity descriptors were calculated by a recently developed AI algorithm Chemical Checker (CC) [Nature Biotechnology, 38:1087–1096, 2020; Nature Communications, 12:3932, 2021], which evaluated bioactivity similarities at five levels:
A: chemistry similarity;
B: biological targets similarity;
C: networks similarity;
D: cell-based bioactivity similarity;
E: similarity based on clinical data.

Those 5 categories of CC bioactivity descriptors were calculated and then subjected to manifold projection using UMAP algorithm, to project all NPs on a 2-Dimensional space. The current NP was highlighted with a small circle in the 2-D map. Below figures: left-to-right, A-to-E.

A: chemistry similarity
B: biological targets similarity
C: networks similarity
D: cell-based bioactivity similarity
E: similarity based on clinical data