Structure

Physi-Chem Properties

Molecular Weight:  286.23
Volume:  329.688
LogP:  5.502
LogD:  4.291
LogS:  -6.046
# Rotatable Bonds:  1
TPSA:  20.23
# H-Bond Aceptor:  1
# H-Bond Donor:  1
# Rings:  3
# Heavy Atoms:  1

MedChem Properties

QED Drug-Likeness Score:  0.739
Synthetic Accessibility Score:  3.619
Fsp3:  0.7
Lipinski Rule-of-5:  Accepted
Pfizer Rule:  Rejected
GSK Rule:  Rejected
BMS Rule:  0
Golden Triangle Rule:  Accepted
Chelating Alert:  0
PAINS Alert:  0

ADMET Properties (ADMETlab2.0)

ADMET: Absorption

Caco-2 Permeability:  -4.698
MDCK Permeability:  1.2480238183343317e-05
Pgp-inhibitor:  0.982
Pgp-substrate:  0.022
Human Intestinal Absorption (HIA):  0.013
20% Bioavailability (F20%):  0.994
30% Bioavailability (F30%):  0.99

ADMET: Distribution

Blood-Brain-Barrier Penetration (BBB):  0.197
Plasma Protein Binding (PPB):  96.11136627197266%
Volume Distribution (VD):  1.612
Pgp-substrate:  4.2096052169799805%

ADMET: Metabolism

CYP1A2-inhibitor:  0.162
CYP1A2-substrate:  0.837
CYP2C19-inhibitor:  0.412
CYP2C19-substrate:  0.937
CYP2C9-inhibitor:  0.341
CYP2C9-substrate:  0.864
CYP2D6-inhibitor:  0.202
CYP2D6-substrate:  0.448
CYP3A4-inhibitor:  0.262
CYP3A4-substrate:  0.716

ADMET: Excretion

Clearance (CL):  5.73
Half-life (T1/2):  0.045

ADMET: Toxicity

hERG Blockers:  0.076
Human Hepatotoxicity (H-HT):  0.086
Drug-inuced Liver Injury (DILI):  0.043
AMES Toxicity:  0.012
Rat Oral Acute Toxicity:  0.375
Maximum Recommended Daily Dose:  0.97
Skin Sensitization:  0.179
Carcinogencity:  0.071
Eye Corrosion:  0.046
Eye Irritation:  0.866
Respiratory Toxicity:  0.841

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  Natural Product: NPC243601

Natural Product ID:  NPC243601
Common Name*:   (-)-8,11,13-Abietatrien-7Alpha-Ol
IUPAC Name:   (4aS,9R,10aS)-1,1,4a-trimethyl-7-propan-2-yl-2,3,4,9,10,10a-hexahydrophenanthren-9-ol
Synonyms:  
Standard InCHIKey:  JMYBTVXXLMTVKS-WSTZPKSXSA-N
Standard InCHI:  InChI=1S/C20H30O/c1-13(2)14-7-8-16-15(11-14)17(21)12-18-19(3,4)9-6-10-20(16,18)5/h7-8,11,13,17-18,21H,6,9-10,12H2,1-5H3/t17-,18+,20-/m1/s1
SMILES:  CC(C)c1ccc2c(c1)[C@@H](C[C@H]1C(C)(C)CCC[C@]21C)O
Synthetic Gene Cluster:   n.a.
ChEMBL Identifier:   CHEMBL3799137
PubChem CID:   21764434
Chemical Classification**:  
  • CHEMONTID:0000000 [Organic compounds]
    • [CHEMONTID:0000012] Lipids and lipid-like molecules
      • [CHEMONTID:0000259] Prenol lipids
        • [CHEMONTID:0001551] Diterpenoids

*Note: the InCHIKey will be temporarily assigned as the "Common Name" if no IUPAC name or alternative short name is available.
**Note: the Chemical Classification was calculated by NPClassifier Version 1.5. Reference: PMID:34662515.

  Species Source

Organism ID Organism Name Taxonomy Level Family SuperKingdom Isolation Part Collection Location Collection Time Reference
NPO28778 Eucalyptus viminalis Species Myrtaceae Eukaryota n.a. n.a. n.a. DOI[10.1007/BF00579992]
NPO28641 Tubocapsicum anomalum Species Solanaceae Eukaryota stems, roots, and leaves Da-Han Mountain, Kaohsiung, Taiwan 2004-OCT PMID[17417907]
NPO28641 Tubocapsicum anomalum Species Solanaceae Eukaryota n.a. n.a. n.a. PMID[17417907]
NPO28877 Scutellaria baicalensis Species Lamiaceae Eukaryota n.a. n.a. n.a. PMID[19829679]
NPO28807 Laggera pterodonta Species Asteraceae Eukaryota n.a. n.a. n.a. PMID[20506820]
NPO28877 Scutellaria baicalensis Species Lamiaceae Eukaryota n.a. root n.a. PMID[21087019]
NPO14130 Phagnalon rupestre Species Asteraceae Eukaryota n.a. aerial part n.a. PMID[21469692]
NPO14130 Phagnalon rupestre Species Asteraceae Eukaryota n.a. n.a. n.a. PMID[21469692]
NPO28877 Scutellaria baicalensis Species Lamiaceae Eukaryota n.a. n.a. n.a. PMID[22314230]
NPO28877 Scutellaria baicalensis Species Lamiaceae Eukaryota n.a. n.a. n.a. PMID[23521110]
NPO29383 Abies holophylla Species Pinaceae Eukaryota trunk n.a. n.a. PMID[24224862]
NPO28765 Miliusa balansae Species Annonaceae Eukaryota leaves n.a. n.a. PMID[26238320]
NPO29383 Abies holophylla Species Pinaceae Eukaryota Trunk n.a. n.a. PMID[26812172]
NPO28171 Anacyclus pyrethrum Species Asteraceae Eukaryota n.a. n.a. n.a. PMID[29775308]
NPO29383 Abies holophylla Species Pinaceae Eukaryota n.a. n.a. n.a. PMID[30063340]
NPO28688 Aster tataricus Species Asteraceae Eukaryota n.a. n.a. n.a. PMID[30931559]
NPO28701 Salvia lanigera Species Lamiaceae Eukaryota n.a. root n.a. PMID[8824952]
NPO27927 Alligator sinensis Species Alligatoridae Eukaryota n.a. n.a. n.a. PMID[9287418]
NPO28877 Scutellaria baicalensis Species Lamiaceae Eukaryota n.a. n.a. n.a. PMID[9834167]
NPO7698 Elettaria cardamomum Species Zingiberaceae Eukaryota Fruit n.a. n.a. Database[FooDB]
NPO7698 Elettaria cardamomum Species Zingiberaceae Eukaryota Plant n.a. n.a. Database[FooDB]
NPO7698 Elettaria cardamomum Species Zingiberaceae Eukaryota Seed n.a. n.a. Database[FooDB]
NPO7698 Elettaria cardamomum Species Zingiberaceae Eukaryota n.a. n.a. Database[FooDB]
NPO7698 Elettaria cardamomum Species Zingiberaceae Eukaryota n.a. n.a. Database[FooDB]
NPO28830 Acronychia haplophylla Species Rutaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO28669 Cuscuta australis Species Convolvulaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO28464 Mentha sylvestris Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO28778 Eucalyptus viminalis Species Myrtaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO28326 Uncaria longiflora Species Rubiaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO23197 Juniperus oxycedrus Species Cupressaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO28877 Scutellaria baicalensis Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO28688 Aster tataricus Species Asteraceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO28895 Pinus monticola Species Pinaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO28765 Miliusa balansae Species Annonaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO7698 Elettaria cardamomum Species Zingiberaceae Eukaryota n.a. n.a. Database[Phenol-Explorer]
NPO28669 Cuscuta australis Species Convolvulaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO23197 Juniperus oxycedrus Species Cupressaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO28464 Mentha sylvestris Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO28932 Myrrhis odorata Species Apiaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO28830 Acronychia haplophylla Species Rutaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO27988 Salvia pisidica Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO28778 Eucalyptus viminalis Species Myrtaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO28688 Aster tataricus Species Asteraceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO28895 Pinus monticola Species Pinaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO28326 Uncaria longiflora Species Rubiaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO28877 Scutellaria baicalensis Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO24010 Buglossoides arvensis Species Boraginaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO28765 Miliusa balansae Species Annonaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO28830 Acronychia haplophylla Species Rutaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO28778 Eucalyptus viminalis Species Myrtaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO28688 Aster tataricus Species Asteraceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO28877 Scutellaria baicalensis Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO28669 Cuscuta australis Species Convolvulaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO28688 Aster tataricus Species Asteraceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO28877 Scutellaria baicalensis Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO7698 Elettaria cardamomum Species Zingiberaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO28807 Laggera pterodonta Species Asteraceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO21547 Crinum giganteum Species Amaryllidaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO28213 Humicola grisea Species Chaetomiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO28545 Scymnorhinus lichia n.a. n.a. n.a. n.a. n.a. n.a. Database[UNPD]
NPO28435 Solanum crinitum Species Solanaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO28489 Euphrasia regelii Species Orobanchaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO28578 Uperoleia inundata Species Myobatrachidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO19830 Chamonixia caespitosa Species Boletaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO28196 Brachylaena perrieri Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO28280 Cetraria komarovii Species Parmeliaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO21902 Thalictrum sachalinense Species Ranunculaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO20157 Boykinia tellimoides Species Saxifragaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO23029 Tetradenia riparia Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO24010 Buglossoides arvensis Species Boraginaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO28688 Aster tataricus Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO13434 Acremonium furcatum Species Plectosphaerellaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO28127 Ursinia speciosa Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO23197 Juniperus oxycedrus Species Cupressaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO28233 Diplotropis ferruginea Species Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO7698 Elettaria cardamomum Species Zingiberaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO28414 Medicosma fareana Species Rutaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO28807 Laggera pterodonta Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO17288 Piliostigma thonningii Species Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO28337 Pimpinella peregrina Species Apiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO28464 Mentha sylvestris Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO27988 Salvia pisidica Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO28855 Salix petiolaris Species Salicaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO28877 Scutellaria baicalensis Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO28778 Eucalyptus viminalis Species Myrtaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO21769 Pterocarpus dalbergioides Species Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO27968 Phoma linga Species Didymellaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO24144 Ophiomastix mixta Species Ophiocomidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO28669 Cuscuta australis Species Convolvulaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO28171 Anacyclus pyrethrum Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO28895 Pinus monticola Species Pinaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO27880 Mimusops laurifolia Species Sapotaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO28384 Ascotricha chartarum Species Xylariaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO28932 Myrrhis odorata Species Apiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO28701 Salvia lanigera Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO29383 Abies holophylla Species Pinaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO28739 Othonna macrophylla Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO28065 Pentachondra pumila Species Ericaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO28112 Amauris niavius Species Nymphalidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO28266 Phlomis ostrowskiana Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO28326 Uncaria longiflora Species Rubiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO28559 Julbernardia globifera Species Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO28641 Tubocapsicum anomalum Species Solanaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO14130 Phagnalon rupestre Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO28145 Dendrodoris limbata Species Dendrodorididae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO28842 Oscillatoria raoi Species Oscillatoriaceae Bacteria n.a. n.a. n.a. Database[UNPD]
NPO22349 Cucumaria frondosa Species Cucumariidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO28501 Hortonia angustifolia Species Monimiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO23092 Ammodendron karelinii Species Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO28830 Acronychia haplophylla Species Rutaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO28623 Phlox decussata Species Polemoniaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO27927 Alligator sinensis Species Alligatoridae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO28765 Miliusa balansae Species Annonaceae Eukaryota n.a. n.a. n.a. Database[UNPD]

☑ Note for Reference:
In addition to directly collecting NP source organism data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated them from below databases:
UNPD: Universal Natural Products Database [PMID: 23638153].
StreptomeDB: a database of streptomycetes natural products [PMID: 33051671].
TM-MC: a database of medicinal materials and chemical compounds in Northeast Asian traditional medicine [PMID: 26156871].
TCM@Taiwan: a Traditional Chinese Medicine database [PMID: 21253603].
TCMID: a Traditional Chinese Medicine database [PMID: 29106634].
TCMSP: The traditional Chinese medicine systems pharmacology database and analysis platform [PMID: 24735618].
HerDing: a herb recommendation system to treat diseases using genes and chemicals [PMID: 26980517].
MetaboLights: a metabolomics database [PMID: 27010336].
FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].

  NP Quantity Composition/Concentration

Organism ID NP ID Organism Material Preparation Organism Part NP Quantity (Standard) NP Quantity (Minimum) NP Quantity (Maximum) Quantity Unit Reference

☑ Note for Reference:
In addition to directly collecting NP quantitative data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated NP quantitative records for specific NP domains (e.g., NPS from foods or herbs) from domain-specific databases. These databases include:
DUKE: Dr. Duke's Phytochemical and Ethnobotanical Databases.
PHENOL EXPLORER: is the first comprehensive database on polyphenol content in foods [PMID: 24103452], its homepage can be accessed at here.
FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].

  Biological Activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference
NPT81 Cell Line A549 Homo sapiens IC50 > 10000.0 nM PMID[496566]
NPT147 Cell Line SK-MEL-2 Homo sapiens IC50 > 10000.0 nM PMID[496566]
NPT20529 NON-MOLECULAR NON-PROTEIN TARGET n.a. IC50 > 10000.0 nM PMID[496566]

☑ Note for Activity Records:
☉ The quantitative biological activities were primarily integrated from ChEMBL (Version-30) database and were also directly collected from PubMed literature. PubMed PMID was provided as the reference link for each activity record.

  Chemically structural similarity: I. Similar Active Natural Products in NPASS

Top-200 similar NPs were calculated against the active-NP-set (includes 4,3285 NPs with experimentally-derived bioactivity available in NPASS)

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules. Tc lies between [0, 1] where '1' indicates the highest similarity. What is Tanimoto coefficient

●  The left chart: Distribution of similarity level between NPC243601 and all remaining natural products in the NPASS database.
●  The right table: Most similar natural products (Tc>=0.56 or Top200).

Similarity Score Similarity Level Natural Product ID
0.9798 High Similarity NPC472979
0.9798 High Similarity NPC27252
0.97 High Similarity NPC149455
0.97 High Similarity NPC64642
0.97 High Similarity NPC472982
0.96 High Similarity NPC472980
0.9394 High Similarity NPC19856
0.9278 High Similarity NPC324602
0.8981 High Similarity NPC92
0.8981 High Similarity NPC472862
0.8981 High Similarity NPC469663
0.8922 High Similarity NPC56168
0.8868 High Similarity NPC471188
0.8807 High Similarity NPC308311
0.8807 High Similarity NPC38893
0.8807 High Similarity NPC219112
0.8807 High Similarity NPC477137
0.8763 High Similarity NPC220596
0.8727 High Similarity NPC477136
0.8716 High Similarity NPC192948
0.8716 High Similarity NPC147179
0.8716 High Similarity NPC35797
0.8661 High Similarity NPC183339
0.8661 High Similarity NPC234337
0.8661 High Similarity NPC133389
0.8649 High Similarity NPC471671
0.8636 High Similarity NPC308828
0.8624 High Similarity NPC268160
0.8571 High Similarity NPC469644
0.8559 High Similarity NPC172219
0.8559 High Similarity NPC304510
0.8519 High Similarity NPC260323
0.8519 High Similarity NPC471189
0.8519 High Similarity NPC111108
0.8519 High Similarity NPC176279
0.8509 High Similarity NPC369
0.8509 High Similarity NPC293831
0.8485 Intermediate Similarity NPC128645
0.8482 Intermediate Similarity NPC469609
0.8455 Intermediate Similarity NPC195922
0.844 Intermediate Similarity NPC228425
0.844 Intermediate Similarity NPC250323
0.8435 Intermediate Similarity NPC273336
0.8435 Intermediate Similarity NPC182333
0.8426 Intermediate Similarity NPC141782
0.8426 Intermediate Similarity NPC133308
0.8362 Intermediate Similarity NPC77691
0.8319 Intermediate Similarity NPC48342
0.8319 Intermediate Similarity NPC164649
0.8319 Intermediate Similarity NPC154030
0.8304 Intermediate Similarity NPC212891
0.8302 Intermediate Similarity NPC471133
0.8302 Intermediate Similarity NPC471186
0.8269 Intermediate Similarity NPC469481
0.8269 Intermediate Similarity NPC289117
0.8261 Intermediate Similarity NPC328504
0.8257 Intermediate Similarity NPC475002
0.8257 Intermediate Similarity NPC13482
0.8257 Intermediate Similarity NPC132720
0.8257 Intermediate Similarity NPC95126
0.8247 Intermediate Similarity NPC93843
0.8214 Intermediate Similarity NPC469719
0.82 Intermediate Similarity NPC79917
0.8198 Intermediate Similarity NPC715
0.8182 Intermediate Similarity NPC1793
0.8182 Intermediate Similarity NPC322753
0.8182 Intermediate Similarity NPC199567
0.8174 Intermediate Similarity NPC260832
0.8174 Intermediate Similarity NPC135467
0.8151 Intermediate Similarity NPC5486
0.8151 Intermediate Similarity NPC253681
0.8148 Intermediate Similarity NPC151477
0.8142 Intermediate Similarity NPC247858
0.8142 Intermediate Similarity NPC105141
0.8142 Intermediate Similarity NPC154511
0.8142 Intermediate Similarity NPC474358
0.8142 Intermediate Similarity NPC257540
0.8142 Intermediate Similarity NPC137496
0.8142 Intermediate Similarity NPC474387
0.8142 Intermediate Similarity NPC471668
0.8142 Intermediate Similarity NPC242764
0.8136 Intermediate Similarity NPC181334
0.8131 Intermediate Similarity NPC117115
0.812 Intermediate Similarity NPC152946
0.812 Intermediate Similarity NPC471794
0.8119 Intermediate Similarity NPC314690
0.8108 Intermediate Similarity NPC46940
0.8103 Intermediate Similarity NPC472981
0.8073 Intermediate Similarity NPC11554
0.8067 Intermediate Similarity NPC4286
0.8067 Intermediate Similarity NPC76119
0.8056 Intermediate Similarity NPC142326
0.8056 Intermediate Similarity NPC94751
0.8051 Intermediate Similarity NPC307139
0.8051 Intermediate Similarity NPC471187
0.8041 Intermediate Similarity NPC304538
0.8037 Intermediate Similarity NPC315794
0.8037 Intermediate Similarity NPC472222
0.8037 Intermediate Similarity NPC472221
0.8034 Intermediate Similarity NPC142198
0.8034 Intermediate Similarity NPC77569
0.8018 Intermediate Similarity NPC95716
0.8018 Intermediate Similarity NPC77772
0.8 Intermediate Similarity NPC58865
0.7966 Intermediate Similarity NPC71094
0.7966 Intermediate Similarity NPC478058
0.7966 Intermediate Similarity NPC11250
0.7965 Intermediate Similarity NPC221275
0.7959 Intermediate Similarity NPC474354
0.7938 Intermediate Similarity NPC172984
0.7934 Intermediate Similarity NPC471077
0.7931 Intermediate Similarity NPC126002
0.7931 Intermediate Similarity NPC93071
0.7931 Intermediate Similarity NPC151197
0.7931 Intermediate Similarity NPC476645
0.7917 Intermediate Similarity NPC87985
0.7913 Intermediate Similarity NPC16030
0.7913 Intermediate Similarity NPC45794
0.7899 Intermediate Similarity NPC198014
0.789 Intermediate Similarity NPC21594
0.789 Intermediate Similarity NPC271274
0.7881 Intermediate Similarity NPC253627
0.7879 Intermediate Similarity NPC474211
0.787 Intermediate Similarity NPC238696
0.7863 Intermediate Similarity NPC68339
0.7857 Intermediate Similarity NPC168855
0.7857 Intermediate Similarity NPC266937
0.7857 Intermediate Similarity NPC470770
0.7851 Intermediate Similarity NPC325294
0.7851 Intermediate Similarity NPC321822
0.785 Intermediate Similarity NPC51015
0.7845 Intermediate Similarity NPC254233
0.7838 Intermediate Similarity NPC314187
0.7835 Intermediate Similarity NPC103326
0.7835 Intermediate Similarity NPC87299
0.7835 Intermediate Similarity NPC99394
0.7835 Intermediate Similarity NPC329319
0.7826 Intermediate Similarity NPC141001
0.7823 Intermediate Similarity NPC476847
0.7815 Intermediate Similarity NPC321402
0.7807 Intermediate Similarity NPC471534
0.7797 Intermediate Similarity NPC259703
0.7797 Intermediate Similarity NPC32322
0.7788 Intermediate Similarity NPC62867
0.7788 Intermediate Similarity NPC177962
0.7788 Intermediate Similarity NPC302371
0.7787 Intermediate Similarity NPC186889
0.7778 Intermediate Similarity NPC323074
0.7769 Intermediate Similarity NPC124030
0.7769 Intermediate Similarity NPC137750
0.7757 Intermediate Similarity NPC211885
0.7757 Intermediate Similarity NPC245927
0.7757 Intermediate Similarity NPC225506
0.7748 Intermediate Similarity NPC262365
0.7742 Intermediate Similarity NPC196193
0.7732 Intermediate Similarity NPC117180
0.7731 Intermediate Similarity NPC162935
0.7731 Intermediate Similarity NPC249340
0.7731 Intermediate Similarity NPC475166
0.7719 Intermediate Similarity NPC322239
0.7719 Intermediate Similarity NPC317869
0.7719 Intermediate Similarity NPC169616
0.7714 Intermediate Similarity NPC21959
0.7712 Intermediate Similarity NPC318581
0.7712 Intermediate Similarity NPC325544
0.7712 Intermediate Similarity NPC477037
0.7706 Intermediate Similarity NPC475225
0.7705 Intermediate Similarity NPC43000
0.7705 Intermediate Similarity NPC100414
0.7699 Intermediate Similarity NPC151537
0.7692 Intermediate Similarity NPC206
0.7685 Intermediate Similarity NPC252105
0.768 Intermediate Similarity NPC312341
0.7672 Intermediate Similarity NPC312105
0.7672 Intermediate Similarity NPC470820
0.7667 Intermediate Similarity NPC176208
0.7667 Intermediate Similarity NPC121168
0.7664 Intermediate Similarity NPC122005
0.7664 Intermediate Similarity NPC299762
0.7664 Intermediate Similarity NPC252821
0.7664 Intermediate Similarity NPC33675
0.7658 Intermediate Similarity NPC320439
0.7653 Intermediate Similarity NPC283012
0.7653 Intermediate Similarity NPC475199
0.7652 Intermediate Similarity NPC186933
0.7647 Intermediate Similarity NPC241001
0.7642 Intermediate Similarity NPC108164
0.7642 Intermediate Similarity NPC30491
0.7642 Intermediate Similarity NPC262936
0.7632 Intermediate Similarity NPC471179
0.7627 Intermediate Similarity NPC42657
0.7623 Intermediate Similarity NPC275576
0.7619 Intermediate Similarity NPC85595
0.7619 Intermediate Similarity NPC289769
0.7615 Intermediate Similarity NPC235762
0.7615 Intermediate Similarity NPC471228
0.7611 Intermediate Similarity NPC296683
0.7611 Intermediate Similarity NPC265513
0.7611 Intermediate Similarity NPC44732
0.7607 Intermediate Similarity NPC299180

  Chemically structural similarity: II. Similar Clinical/Approved Drugs

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules.

●  The left chart: Distribution of similarity level between NPC243601 and all drugs/candidates.
●  The right table: Most similar clinical/approved drugs (Tc>=0.56 or Top200).

Similarity Score Similarity Level Drug ID Developmental Stage
0.8824 High Similarity NPD5700 Clinical (unspecified phase)
0.8532 High Similarity NPD4869 Clinical (unspecified phase)
0.8319 Intermediate Similarity NPD3091 Approved
0.8034 Intermediate Similarity NPD3092 Approved
0.8017 Intermediate Similarity NPD3095 Discontinued
0.7982 Intermediate Similarity NPD2342 Discontinued
0.7845 Intermediate Similarity NPD7741 Discontinued
0.7788 Intermediate Similarity NPD7635 Approved
0.7769 Intermediate Similarity NPD3094 Phase 2
0.7652 Intermediate Similarity NPD5951 Approved
0.7563 Intermediate Similarity NPD3019 Approved
0.7563 Intermediate Similarity NPD4059 Approved
0.7563 Intermediate Similarity NPD7725 Approved
0.7547 Intermediate Similarity NPD1809 Phase 2
0.7542 Intermediate Similarity NPD2227 Clinical (unspecified phase)
0.7524 Intermediate Similarity NPD845 Approved
0.75 Intermediate Similarity NPD3020 Approved
0.75 Intermediate Similarity NPD5736 Approved
0.75 Intermediate Similarity NPD2629 Approved
0.7477 Intermediate Similarity NPD288 Approved
0.7453 Intermediate Similarity NPD1432 Clinical (unspecified phase)
0.7436 Intermediate Similarity NPD4198 Discontinued
0.7417 Intermediate Similarity NPD5126 Approved
0.7417 Intermediate Similarity NPD2932 Approved
0.7417 Intermediate Similarity NPD5125 Phase 3
0.7383 Intermediate Similarity NPD844 Approved
0.7333 Intermediate Similarity NPD1710 Approved
0.732 Intermediate Similarity NPD9294 Approved
0.7273 Intermediate Similarity NPD7163 Clinical (unspecified phase)
0.7266 Intermediate Similarity NPD6663 Approved
0.7244 Intermediate Similarity NPD7008 Discontinued
0.7231 Intermediate Similarity NPD4097 Suspended
0.7227 Intermediate Similarity NPD6775 Clinical (unspecified phase)
0.7227 Intermediate Similarity NPD7325 Clinical (unspecified phase)
0.7222 Intermediate Similarity NPD2860 Approved
0.7222 Intermediate Similarity NPD2859 Approved
0.7209 Intermediate Similarity NPD3620 Phase 2
0.7209 Intermediate Similarity NPD3619 Clinical (unspecified phase)
0.7209 Intermediate Similarity NPD4140 Approved
0.7193 Intermediate Similarity NPD4095 Clinical (unspecified phase)
0.719 Intermediate Similarity NPD4093 Discontinued
0.7177 Intermediate Similarity NPD5327 Phase 3
0.7154 Intermediate Similarity NPD5350 Clinical (unspecified phase)
0.7154 Intermediate Similarity NPD5351 Clinical (unspecified phase)
0.7154 Intermediate Similarity NPD5735 Approved
0.7143 Intermediate Similarity NPD4624 Approved
0.7131 Intermediate Similarity NPD1751 Approved
0.7131 Intermediate Similarity NPD2286 Discontinued
0.713 Intermediate Similarity NPD6049 Phase 2
0.713 Intermediate Similarity NPD2934 Approved
0.713 Intermediate Similarity NPD2933 Approved
0.713 Intermediate Similarity NPD6048 Clinical (unspecified phase)
0.7121 Intermediate Similarity NPD7742 Approved
0.7121 Intermediate Similarity NPD7743 Approved
0.7119 Intermediate Similarity NPD7159 Clinical (unspecified phase)
0.7117 Intermediate Similarity NPD289 Clinical (unspecified phase)
0.7117 Intermediate Similarity NPD1616 Discontinued
0.7109 Intermediate Similarity NPD5952 Clinical (unspecified phase)
0.7094 Intermediate Similarity NPD6124 Clinical (unspecified phase)
0.7073 Intermediate Similarity NPD3023 Approved
0.7073 Intermediate Similarity NPD3026 Approved
0.7069 Intermediate Similarity NPD4750 Phase 3
0.7069 Intermediate Similarity NPD3022 Approved
0.7069 Intermediate Similarity NPD3021 Approved
0.7054 Intermediate Similarity NPD4817 Approved
0.7054 Intermediate Similarity NPD4719 Phase 2
0.7054 Intermediate Similarity NPD4818 Approved
0.7049 Intermediate Similarity NPD3024 Approved
0.7049 Intermediate Similarity NPD3025 Approved
0.704 Intermediate Similarity NPD3600 Clinical (unspecified phase)
0.7031 Intermediate Similarity NPD2605 Approved
0.7031 Intermediate Similarity NPD2606 Approved
0.7009 Intermediate Similarity NPD4025 Clinical (unspecified phase)
0.7009 Intermediate Similarity NPD4141 Clinical (unspecified phase)
0.7008 Intermediate Similarity NPD6917 Clinical (unspecified phase)
0.7 Intermediate Similarity NPD3317 Approved
0.6992 Remote Similarity NPD4626 Approved
0.6992 Remote Similarity NPD3412 Clinical (unspecified phase)
0.6991 Remote Similarity NPD4231 Approved
0.6991 Remote Similarity NPD4229 Approved
0.6977 Remote Similarity NPD5155 Approved
0.6977 Remote Similarity NPD5156 Approved
0.697 Remote Similarity NPD6353 Approved
0.6953 Remote Similarity NPD3636 Approved
0.6953 Remote Similarity NPD3635 Approved
0.6953 Remote Similarity NPD3637 Approved
0.693 Remote Similarity NPD3046 Approved
0.693 Remote Similarity NPD3048 Approved
0.693 Remote Similarity NPD3047 Approved
0.6923 Remote Similarity NPD1792 Phase 2
0.6912 Remote Similarity NPD3638 Discontinued
0.6899 Remote Similarity NPD3595 Approved
0.6899 Remote Similarity NPD3594 Approved
0.6875 Remote Similarity NPD2195 Approved
0.6875 Remote Similarity NPD2194 Approved
0.687 Remote Similarity NPD7715 Approved
0.687 Remote Similarity NPD7714 Approved
0.6855 Remote Similarity NPD4589 Approved
0.6842 Remote Similarity NPD4656 Approved
0.6842 Remote Similarity NPD4658 Approved
0.6842 Remote Similarity NPD3680 Approved
0.6842 Remote Similarity NPD3682 Approved
0.6838 Remote Similarity NPD6831 Clinical (unspecified phase)
0.6829 Remote Similarity NPD2106 Clinical (unspecified phase)
0.6812 Remote Similarity NPD7910 Clinical (unspecified phase)
0.6803 Remote Similarity NPD4230 Clinical (unspecified phase)
0.6794 Remote Similarity NPD6410 Clinical (unspecified phase)
0.6789 Remote Similarity NPD1088 Approved
0.6786 Remote Similarity NPD9611 Approved
0.6786 Remote Similarity NPD9609 Approved
0.6786 Remote Similarity NPD9612 Approved
0.6783 Remote Similarity NPD179 Clinical (unspecified phase)
0.6783 Remote Similarity NPD1237 Approved
0.6777 Remote Similarity NPD497 Approved
0.6774 Remote Similarity NPD5691 Approved
0.6772 Remote Similarity NPD6025 Phase 1
0.6754 Remote Similarity NPD854 Approved
0.6754 Remote Similarity NPD855 Approved
0.6748 Remote Similarity NPD7610 Discontinued
0.6741 Remote Similarity NPD6587 Approved
0.6741 Remote Similarity NPD6586 Approved
0.6739 Remote Similarity NPD7003 Approved
0.6729 Remote Similarity NPD1101 Approved
0.6726 Remote Similarity NPD2066 Phase 3
0.6723 Remote Similarity NPD4253 Approved
0.6723 Remote Similarity NPD4254 Approved
0.672 Remote Similarity NPD5238 Clinical (unspecified phase)
0.6719 Remote Similarity NPD1283 Approved
0.6718 Remote Similarity NPD4625 Phase 3
0.6696 Remote Similarity NPD3681 Approved
0.6696 Remote Similarity NPD3683 Approved
0.6694 Remote Similarity NPD495 Approved
0.6694 Remote Similarity NPD2234 Approved
0.6694 Remote Similarity NPD5304 Approved
0.6694 Remote Similarity NPD498 Approved
0.6694 Remote Similarity NPD5303 Approved
0.6694 Remote Similarity NPD2229 Approved
0.6694 Remote Similarity NPD2228 Approved
0.6694 Remote Similarity NPD496 Approved
0.6694 Remote Similarity NPD6010 Discontinued
0.6692 Remote Similarity NPD4060 Phase 1
0.6667 Remote Similarity NPD2549 Approved
0.6667 Remote Similarity NPD2558 Approved
0.6667 Remote Similarity NPD2552 Approved
0.6667 Remote Similarity NPD4907 Clinical (unspecified phase)
0.6667 Remote Similarity NPD3772 Phase 3
0.6667 Remote Similarity NPD2555 Approved
0.6667 Remote Similarity NPD688 Clinical (unspecified phase)
0.6667 Remote Similarity NPD5698 Clinical (unspecified phase)
0.6667 Remote Similarity NPD2553 Approved
0.6667 Remote Similarity NPD4814 Discontinued
0.6667 Remote Similarity NPD1445 Approved
0.6667 Remote Similarity NPD2550 Approved
0.6667 Remote Similarity NPD1444 Approved
0.6643 Remote Similarity NPD7236 Approved
0.6642 Remote Similarity NPD7430 Approved
0.6642 Remote Similarity NPD2174 Clinical (unspecified phase)
0.6642 Remote Similarity NPD7431 Approved
0.664 Remote Similarity NPD1651 Approved
0.6637 Remote Similarity NPD9495 Approved
0.6614 Remote Similarity NPD1201 Approved
0.6612 Remote Similarity NPD7094 Approved
0.6612 Remote Similarity NPD6858 Approved
0.6609 Remote Similarity NPD4189 Approved
0.6609 Remote Similarity NPD940 Approved
0.6609 Remote Similarity NPD4188 Approved
0.6609 Remote Similarity NPD846 Approved
0.6606 Remote Similarity NPD1089 Approved
0.6606 Remote Similarity NPD1090 Approved
0.6606 Remote Similarity NPD1086 Approved
0.6604 Remote Similarity NPD111 Approved
0.6604 Remote Similarity NPD5734 Clinical (unspecified phase)
0.6589 Remote Similarity NPD6696 Suspended
0.6585 Remote Similarity NPD7157 Approved
0.6577 Remote Similarity NPD3718 Approved
0.6577 Remote Similarity NPD3719 Approved
0.6571 Remote Similarity NPD3971 Phase 1
0.6567 Remote Similarity NPD2238 Phase 2
0.6565 Remote Similarity NPD2861 Phase 2
0.6562 Remote Similarity NPD2232 Approved
0.6562 Remote Similarity NPD2233 Approved
0.6562 Remote Similarity NPD2230 Approved
0.656 Remote Similarity NPD7330 Discontinued
0.656 Remote Similarity NPD2226 Clinical (unspecified phase)
0.6555 Remote Similarity NPD4717 Approved
0.6555 Remote Similarity NPD4720 Approved
0.6555 Remote Similarity NPD4718 Approved
0.6552 Remote Similarity NPD5738 Clinical (unspecified phase)
0.6552 Remote Similarity NPD1930 Approved
0.6552 Remote Similarity NPD6647 Phase 2
0.6552 Remote Similarity NPD1929 Approved
0.6552 Remote Similarity NPD1931 Clinical (unspecified phase)
0.6549 Remote Similarity NPD3495 Discontinued
0.6549 Remote Similarity NPD3645 Discontinued
0.6547 Remote Similarity NPD6674 Discontinued
0.6544 Remote Similarity NPD41 Approved
0.6544 Remote Similarity NPD5886 Approved
0.6544 Remote Similarity NPD7718 Clinical (unspecified phase)
0.6541 Remote Similarity NPD6812 Clinical (unspecified phase)
0.6538 Remote Similarity NPD4339 Clinical (unspecified phase)

  Bioactivity similarity: Similar Natural Products in NPASS

Bioactivity similarity was calculated based on bioactivity descriptors of compounds. The bioactivity descriptors were calculated by a recently developed AI algorithm Chemical Checker (CC) [Nature Biotechnology, 38:1087–1096, 2020; Nature Communications, 12:3932, 2021], which evaluated bioactivity similarities at five levels:
A: chemistry similarity;
B: biological targets similarity;
C: networks similarity;
D: cell-based bioactivity similarity;
E: similarity based on clinical data.

Those 5 categories of CC bioactivity descriptors were calculated and then subjected to manifold projection using UMAP algorithm, to project all NPs on a 2-Dimensional space. The current NP was highlighted with a small circle in the 2-D map. Below figures: left-to-right, A-to-E.

A: chemistry similarity
B: biological targets similarity
C: networks similarity
D: cell-based bioactivity similarity
E: similarity based on clinical data