Natural Product: NPC260323

Natural Product IDNPC260323
Common Name
?
The InCHIKey will be temporarily assigned as the "Common Name" if no IUPAC name or alternative short name is available.
Ferruginol
IUPAC Name (4bS,8aS)-4b,8,8-trimethyl-2-propan-2-yl-5,6,7,8a,9,10-hexahydrophenanthren-3-ol
Synonyms Ferruginol
Synthetic Gene Cluster n.a.
ChEMBL Identifier CHEMBL197308
PubChem CID 442027
Chemical Classification
  • CHEMONTID:0000000 [Organic compounds]
    • [CHEMONTID:0000012] Lipids and lipid-like molecules
      • [CHEMONTID:0000259] Prenol lipids
        • [CHEMONTID:0001551] Diterpenoids

The Chemical Classification was calculated by Classyfire, a software for chemical taxonomy calculation. Reference: DOI:10.1186/s13321-016-0174-y.

  Chemical Representations

Standard InCHIKey QXNWVJOHUAQHLM-AZUAARDMSA-N
Standard InCHI InChI=1S/C20H30O/c1-13(2)15-11-14-7-8-18-19(3,4)9-6-10-20(18,5)16(14)12-17(15)21/h11-13,18,21H,6-10H2,1-5H3/t18-,20+/m0/s1
SMILES CC(c1cc2CC[C@@H]3[C@](c2cc1O)(C)CCCC3(C)C)C

  Calculated Properties

Physi-Chem Properties

Molecular Weight:   286.23 Volume:   329.688
?
Van der Waals volume.
Dense:   0.868 LogP:   4.822
?
The logarithm of the n-octanol/water distribution coefficients.
logD7.4:   3.73
?
The logarithm of the n-octanol/water distribution coefficient at pH=7.4.
LogS:   -4.956
?
The logarithm of aqueous solubility value.
Rotatable Bonds:   1.0 Rigid Bonds:   16.0
TPSA:   20.23
?
Topological Polar Surface Area.
H-Bond Acceptor:   1.0
H-Bond Donor:   1.0 Rings:   3.0
Heavy Atoms:   1.0

MedChem Properties

QED Drug-Likeness Score:   0.718 GASA:   0.0
?
GASA represents the probability of being difficult to synthesize, ranging from 0 to 1.
Synthetic Accessibility Score:   3.387 Fsp3:   0.7
MCE-18:   72.882
?
MCE-18 stands for medicinal chemistry evolution.MCE-18≥45 is considered a suitable value.
Lipinski Rule-of-5:   Rejected
Pfizer Rule:   Accepted GSK Rule:   Accepted
Golden Triangle Rule:   Rejected BMS Rule:   0
Chelating Alert:   0 PAINS Alert:   0
Colloidal aggregators:   0.269 Fluc inhibitor:   0.003
?
The fluc inhibitor value is the probability of being fLuc inhibitors, within the range of 0 to 1.
Blue fluorescence:   0.047
?
The blue fluorescence value is the probability of being blue fluorescence, within the range of 0 to 1
Green fluorescence:   0.007
?
The green fluorescence value is the probability of being green fluorescence, within the range of 0 to 1
Reactive compounds:   0.636 Promiscuous compounds:   0.135

ADMET Properties (ADMETlab3.0)

ADMET: Absorption

Caco-2 Permeability:   -4.662 MDCK Permeability:   -4.842
Pgp-inhibitor:   0.994 Pgp-substrate:   0.001
PAMPA:   0.007
?
The experimental data for Peff was logarithmically transformed (logPeff). Molecules with log Peff values below 2.0 were classified as low-permeability (Category 0), while those with log Peff values exceeding 2.5 were classified as high-permeability (Category 1).
Human Intestinal Absorption (HIA):   0.0
20% Bioavailability (F20%):   0.308 30% Bioavailability (F30%):   0.322
50% Bioavailability (F50%):   0.975

ADMET: Distribution

Blood-Brain-Barrier Penetration (BBB):   0.109 MRP1:   0.935
Plasma Protein Binding (PPB):   98.722% Volume Distribution (VD):   0.765
Fu: 1.733%
?
The fraction unbound in plasms.
OATP1B1 inhibitor:   1.0
OATP1B3 inhibitor:   0.996 BCRP inhibitor:   0.069
BSEP inhibitor:   1.0

ADMET: Metabolism

CYP1A2-inhibitor:   0.999 CYP1A2-substrate:   0.174
CYP2C19-inhibitor:   1.0 CYP2C19-substrate:   0.198
CYP2C9-inhibitor:   0.941 CYP2C9-substrate:   0.158
CYP2D6-inhibitor:   0.079 CYP2D6-substrate:   0.02
CYP3A4-inhibitor:   0.999 CYP3A4-substrate:   1.0
CYP2B6-substrate:   0.972 CYP2C8-inhibitor:   0.906
HLM stability:   0.773
?
Human liver microsomal (HLM) stability. Category 0: stable+ (HLM > 30 min); Category 1: unstable- (HLM ≤ 30 min). The output value is the probability of human liver microsomal instability, where a value closer to 1 indicates a higher likelihood of instability.

ADMET: Excretion

Clearance (CL):  7.213 Half-life (T1/2):  0.746

ADMET: Toxicity

hERG Blockers:  0.101 hERG Blockers (10um):  0.588
Human Hepatotoxicity (H-HT):  0.513 Drug-induced Liver Injury (DILI):  0.196
AMES Toxicity:  0.308 Rat Oral Acute Toxicity:  0.585
Maximum Recommended Daily Dose:  0.835 Skin Sensitization:  0.834
Carcinogencity:  0.668 Eye Corrosion:  0.078
Eye Irritation:  0.914 Respiratory Toxicity:  0.945
Drug-induced Neurotoxicity:  0.266 Ototoxicity:  0.615
Hematotoxicity:  0.386 Drug-induced Nephrotoxicity:  0.731
Genotoxicity:  0.134 RPMI-8226 Immunitoxicity:  0.057
A549 Cytotoxicity:  0.385 Hek293 Cytotoxicity:  0.451
BCF:   2.692
?
Bioconcentration factors are used for considering secondary poisoning potential and assessing risks to human health via the food chain. The unit is -log10[(mg/L)/(1000*MW)].
IGC50:   5.089
?
48 hour Tetrahymena pyriformis IGC50. The unit of IGC50 is -log10[(mg/L)/(1000*MW)].
LC50DM:   5.968
?
48 hour Daphnia magna LC50. The unit of LC50DM is -log10[(mg/L)/(1000*MW)].
LC50FM:   5.904
?
96 hour fathead minnow LC50. The unit of LC50FM is -log10[(mg/L)/(1000*MW)].

  Species Source

Organism ID Organism Name Taxonomy Level Family SuperKingdom Isolation Part Collection Location Collection Time Reference
NPO15454 Vitex rotundifolia Species Lamiaceae Eukaryota Fruits n.a. n.a. PMID[10579867]
NPO21169 Salvia blepharochlaena Species Lamiaceae Eukaryota roots n.a. n.a. PMID[11325249]
NPO15454 Vitex rotundifolia Species Lamiaceae Eukaryota subterranean part n.a. n.a. PMID[11374949]
NPO15454 Vitex rotundifolia Species Lamiaceae Eukaryota n.a. fruit n.a. PMID[11536386]
NPO15454 Vitex rotundifolia Species Lamiaceae Eukaryota fruits n.a. n.a. PMID[11975496]
NPO25701 Amentotaxus yunnanensis Species Taxaceae Eukaryota n.a. n.a. n.a. PMID[12880325]
NPO16570 Didemnum obscurum Species Didemnidae Eukaryota n.a. Tiruchandur coast in the Gulf of Mannar, Tamilnadu, India 2002-FEB PMID[15270574]
NPO25779 Vicia sativa Species Fabaceae Eukaryota n.a. n.a. n.a. PMID[1567426]
NPO25813 Salvia przewalskii Species Lamiaceae Eukaryota n.a. whole plant n.a. PMID[17217287]
NPO19278 Taxodium distichum Species Cupressaceae Eukaryota n.a. n.a. n.a. PMID[17869103]
NPO13135 Campylotropis hirtella Species Fabaceae Eukaryota n.a. n.a. n.a. PMID[19481938]
NPO882 Trogopterus xanthipes Species Sciuridae Eukaryota feces n.a. n.a. PMID[20402524]
NPO17318 Streptomyces cyaneus Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[21462031]
NPO18542 Salvia sahendica Species Lamiaceae Eukaryota n.a. collected from the plants natural habitat in Tabriz, Northwestern Iran, at an altitude of 1400 m n.a. PMID[21775156]
NPO13852 Pachysandra terminalis Species Buxaceae Eukaryota n.a. n.a. n.a. PMID[22804108]
NPO14077 Chamaecyparis lawsoniana Species Cupressaceae Eukaryota n.a. stem n.a. PMID[23157017]
NPO14077 Chamaecyparis lawsoniana Species Cupressaceae Eukaryota n.a. leaf n.a. PMID[23157017]
NPO32847 fokienia hodginsii Species Cupressaceae Eukaryota Twigs and Leaves n.a. n.a. PMID[23691952]
NPO15454 Vitex rotundifolia Species Lamiaceae Eukaryota fruits n.a. n.a. PMID[24035341]
NPO18892 Salvinia molesta Species Salviniaceae Eukaryota whole plants east Texas, USA 2009-2011 PMID[24210499]
NPO18892 Salvinia molesta Species Salviniaceae Eukaryota n.a. n.a. n.a. PMID[24210499]
NPO19278 Taxodium distichum Species Cupressaceae Eukaryota n.a. n.a. n.a. PMID[26905523]
NPO12796 Periploca sepium Species Apocynaceae Eukaryota n.a. n.a. n.a. PMID[28294615]
NPO865 Dendrobium loddigesii Species Orchidaceae Eukaryota n.a. n.a. n.a. PMID[31291099]
NPO45866 Taiwania flousiana Species Cupressaceae Eukaryota n.a. n.a. n.a. PMID[32093424]
NPO62555 Salvia fruticosa Species Lamiaceae Eukaryota n.a. n.a. n.a. PMID[36615289]
NPO14077 Chamaecyparis lawsoniana Species Cupressaceae Eukaryota n.a. n.a. n.a. PMID[37447036]
NPO25779 Vicia sativa Species Fabaceae Eukaryota n.a. n.a. n.a. PMID[37570961]
NPO62555 Salvia fruticosa Species Lamiaceae Eukaryota n.a. n.a. n.a. PMID[38001843]
NPO14077 Chamaecyparis lawsoniana Species Cupressaceae Eukaryota n.a. n.a. n.a. PMID[38794396]
NPO59065 Juniperus Thurifera Species Cupressaceae Eukaryota n.a. n.a. n.a. PMID[39266453]
NPO42856 Salvia Sahendica Species Lamiaceae Eukaryota n.a. n.a. n.a. PMID[39438657]
NPO1257 Distephanus angulifolius Species Asteraceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO28257 Dioscorea communis Species Dioscoreaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO10922 Pentaclethra macrophylla Species Fabaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO415 Deguelia hatschbachii Species Fabaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO8300 Apis mellifera ligustica Species Apidae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO25212 Ritterella rubra n.a. n.a. n.a. n.a. n.a. n.a. Database[COCONUT]
NPO25813 Salvia przewalskii Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO19278 Taxodium distichum Species Cupressaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO7773 Crinum moorei Species Amaryllidaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO15454 Vitex rotundifolia Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO9704 Sonneratia caseolaris Species Lythraceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO17251 Aniba firmula Species Lauraceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO22016 Notholaena dealbata Species Pteridaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO5124 Aconitum ibukiense Species Ranunculaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO3705 Anacardium humile Species Anacardiaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO13361 Clerodendrum tomentosum Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO14339 Fevillea trilobata Species Cucurbitaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO15612 Glaucium oxylobum Species Papaveraceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO12311 Graphis handelii Species Graphidaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO14653 Haliotis diversicolor Species Haliotidae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO25141 Mycetinis alliaceus Species Omphalotaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO17318 Streptomyces cyaneus Species Streptomycetaceae Bacteria n.a. n.a. n.a. Database[COCONUT]
NPO17158 Trichocereus bridgesii Species Cactaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO25701 Amentotaxus yunnanensis Species Taxaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO28466 Torreya nucifera Species Taxaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO12796 Periploca sepium Species Apocynaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO4009 Allochromatium minutissimum Species Chromatiaceae Bacteria n.a. n.a. n.a. Database[COCONUT]
NPO23960 Artemisia siversiana Species Asteraceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO27437 Camptothecium lutescens Species Brachytheciaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO26223 Cladonia bellidiflora Species Cladoniaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO25868 Decachaeta ovatifolia n.a. n.a. n.a. n.a. n.a. n.a. Database[COCONUT]
NPO12476 Delphinium cyphoplectrum Species Ranunculaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO26087 Euphorbia retusa Species Euphorbiaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO10497 Hydrolithon reinboldii Species Corallinaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO26054 Palmaria palmata Species Palmariaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO6346 Phallusia fumigata Species Ascidiidae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO26316 Pleurophycus gardneri Species Alariaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO23417 Rhabdia lycioides n.a. n.a. n.a. n.a. n.a. n.a. Database[COCONUT]
NPO10155 Stauntonia obovatifoliola Species Lardizabalaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO25974 Streptomyces lateritius Species Streptomycetaceae Bacteria n.a. n.a. n.a. Database[COCONUT]
NPO24740 Uvaria klaineana Species Annonaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO24988 Viburnum sieboldi Species Adoxaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO25779 Vicia sativa Species Fabaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO18892 Salvinia molesta Species Salviniaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO16570 Didemnum obscurum Species Didemnidae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO10233 Nicotiana trigonophylla Species Solanaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO5565 Harpagophytum procumbens Species Pedaliaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO12898 Rhaphiolepis umbellata Species Rosaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO9319 Pterocaulon virgatum Species Asteraceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO2267 Liatris tenuifolia Species Asteraceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO13852 Pachysandra terminalis Species Buxaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO7646 Edgeworthia chrysantha Species Thymelaeaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO14820 Petasites spurius Species Asteraceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO21169 Salvia blepharochlaena Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO22284 Acacia myrtifolia Species Fabaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO14077 Chamaecyparis lawsoniana Species Cupressaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO19313 Herniaria fontanesii Species Caryophyllaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO865 Dendrobium loddigesii Species Orchidaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO5795 Koelpinia linearis Species Asteraceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO6152 Ctenodiscus crispatus Species Ctenodiscidae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO21044 Sphaerellopsis filum Species Leptosphaeriaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO882 Trogopterus xanthipes Species Sciuridae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO6321 Agathosma thymifolia Species Rutaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO12800 Glycine falcata Species Fabaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO22758 Picradeniopsis pringlei Species Asteraceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO12205 Eucalyptus apodophylla Species Myrtaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO7773 Crinum moorei Species Amaryllidaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO12796 Periploca sepium Species Apocynaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO882 Trogopterus xanthipes Species Sciuridae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO2052 Hedyotis acutangula Species Rubiaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO15454 Vitex rotundifolia Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO25701 Amentotaxus yunnanensis Species Taxaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO13135 Campylotropis hirtella Species Fabaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO5795 Koelpinia linearis Species Asteraceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO25813 Salvia przewalskii Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO5565 Harpagophytum procumbens Species Pedaliaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO865 Dendrobium loddigesii Species Orchidaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO6731 Ononis spinosa Species Fabaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO25779 Vicia sativa Species Fabaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO15612 Glaucium oxylobum Species Papaveraceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO13852 Pachysandra terminalis Species Buxaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO19278 Taxodium distichum Species Cupressaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO8300 Apis mellifera ligustica Species Apidae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO882 Trogopterus xanthipes Species Sciuridae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO15454 Vitex rotundifolia Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO15519 Lysimachia candida Species Primulaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO12796 Periploca sepium Species Apocynaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO25813 Salvia przewalskii Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO13852 Pachysandra terminalis Species Buxaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO25779 Vicia sativa Species Fabaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO28257 Dioscorea communis Species Dioscoreaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO5795 Koelpinia linearis Species Asteraceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO6731 Ononis spinosa Species Fabaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO5565 Harpagophytum procumbens Species Pedaliaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO7773 Crinum moorei Species Amaryllidaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO2267 Liatris tenuifolia Species Asteraceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO25701 Amentotaxus yunnanensis Species Taxaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO19278 Taxodium distichum Species Cupressaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO13135 Campylotropis hirtella Species Fabaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO2052 Hedyotis acutangula Species Rubiaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO15612 Glaucium oxylobum Species Papaveraceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO865 Dendrobium loddigesii Species Orchidaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO24740 Uvaria klaineana Species Annonaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO882 Trogopterus xanthipes Species Sciuridae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO13852 Pachysandra terminalis Species Buxaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO25779 Vicia sativa Species Fabaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO15612 Glaucium oxylobum Species Papaveraceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO865 Dendrobium loddigesii Species Orchidaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO2267 Liatris tenuifolia Species Asteraceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO12796 Periploca sepium Species Apocynaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO6731 Ononis spinosa Species Fabaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO3127 Aralia continentalis Species Araliaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO12796 Periploca sepium Species Apocynaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO5565 Harpagophytum procumbens Species Pedaliaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO865 Dendrobium loddigesii Species Orchidaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO15454 Vitex rotundifolia Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO1815 Breonia chinensis Species Rubiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO9704 Sonneratia caseolaris Species Lythraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO23384 Rhodiola semenovii Species Crassulaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO15454 Vitex rotundifolia Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO26223 Cladonia bellidiflora Species Cladoniaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO21044 Sphaerellopsis filum Species Leptosphaeriaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO865 Dendrobium loddigesii Species Orchidaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO23417 Rhabdia lycioides n.a. n.a. n.a. n.a. n.a. n.a. Database[UNPD]
NPO10638 Plectranthus myrianthus Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO14820 Petasites spurius Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO3873 Crotalaria candicans Species Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO6346 Phallusia fumigata Species Ascidiidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO11843 Stephania zippeliana Species Menispermaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO12565 Hypericum polyanthemum Species Hypericaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO11190 Veronica polita Species Plantaginaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO25974 Streptomyces lateritius Species Streptomycetaceae Bacteria n.a. n.a. n.a. Database[UNPD]
NPO415 Deguelia hatschbachii Species Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO24988 Viburnum sieboldi Species Adoxaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO10922 Pentaclethra macrophylla Species Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO5043 Eria japonica Species Orchidaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO4009 Allochromatium minutissimum Species Chromatiaceae Bacteria n.a. n.a. n.a. Database[UNPD]
NPO2190 Persicaria filiformis Species Polygonaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO8934 Gypsophila perfoliata Species Caryophyllaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO19835 Melodorum oldhamii Species Annonaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO2052 Hedyotis acutangula Species Rubiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO22016 Notholaena dealbata Species Pteridaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO9532 Vernonia cistifolia Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO26054 Palmaria palmata Species Palmariaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO13135 Campylotropis hirtella Species Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO12311 Graphis handelii Species Graphidaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO6289 Ceropegia dichotoma Species Apocynaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO5456 Juniperus drupacea Species Cupressaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO24740 Uvaria klaineana Species Annonaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO7773 Crinum moorei Species Amaryllidaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO14653 Haliotis diversicolor Species Haliotidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO1257 Distephanus angulifolius Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO3127 Aralia continentalis Species Araliaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO25868 Decachaeta ovatifolia n.a. n.a. n.a. n.a. n.a. n.a. Database[UNPD]
NPO26087 Euphorbia retusa Species Euphorbiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO12796 Periploca sepium Species Apocynaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO9319 Pterocaulon virgatum Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO21720 Talaromyces variabilis Species Trichocomaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO7822.1 Eucalyptus globulus subsp. bicostata Subspecies Myrtaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO14339 Fevillea trilobata Species Cucurbitaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO12091 Martensia denticulata Species Delesseriaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO25141 Mycetinis alliaceus Species Omphalotaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO526 Salvia sessei Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO6731 Ononis spinosa Species Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO12205 Eucalyptus apodophylla Species Myrtaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO11576 Glycosmis macrophylla Species Rutaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO15612 Glaucium oxylobum Species Papaveraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO10605 Tristania conferta Species Myrtaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO27607 Saussurea candicans Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO22691 Mentha cardiaca Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO28257 Dioscorea communis Species Dioscoreaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO25701 Amentotaxus yunnanensis Species Taxaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO12476 Delphinium cyphoplectrum Species Ranunculaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO25813 Salvia przewalskii Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO14077 Chamaecyparis lawsoniana Species Cupressaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO6321 Agathosma thymifolia Species Rutaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO10497 Hydrolithon reinboldii Species Corallinaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO17251 Aniba firmula Species Lauraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO22377 Lechevalieria flava Species Pseudonocardiaceae Bacteria n.a. n.a. n.a. Database[UNPD]
NPO8215 Crepis zacintha Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO12800 Glycine falcata Species Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO23960 Artemisia siversiana Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO21169 Salvia blepharochlaena Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO6152 Ctenodiscus crispatus Species Ctenodiscidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO8214 Stylotrichium rotundifolium Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO2267 Liatris tenuifolia Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO27437 Camptothecium lutescens Species Brachytheciaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO5795 Koelpinia linearis Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO25212 Ritterella rubra n.a. n.a. n.a. n.a. n.a. n.a. Database[UNPD]
NPO10155 Stauntonia obovatifoliola Species Lardizabalaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO12898 Rhaphiolepis umbellata Species Rosaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO3705 Anacardium humile Species Anacardiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO11191 Campylospermum flavum Species Ochnaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO26316 Pleurophycus gardneri Species Alariaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO13361 Clerodendrum tomentosum Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO19247 Viburnum jucundum Species Adoxaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO13852 Pachysandra terminalis Species Buxaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO17158 Trichocereus bridgesii Species Cactaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO17318 Streptomyces cyaneus Species Streptomycetaceae Bacteria n.a. n.a. n.a. Database[UNPD]
NPO25779 Vicia sativa Species Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO7646 Edgeworthia chrysantha Species Thymelaeaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO3265 Echinops kebericho Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO10233 Nicotiana trigonophylla Species Solanaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO22284 Acacia myrtifolia Species Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO18542 Salvia sahendica Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO28466 Torreya nucifera Species Taxaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO16334 Polystictus versicolor Species Tyrannidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO597 Coprosma australis Species Rubiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO5124 Aconitum ibukiense Species Ranunculaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO18607 Eria macrophylla Species Orchidaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO22758 Picradeniopsis pringlei Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO16570 Didemnum obscurum Species Didemnidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO18270 Betula divaricata Species Betulaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO19313 Herniaria fontanesii Species Caryophyllaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO15519 Lysimachia candida Species Primulaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO19278 Taxodium distichum Species Cupressaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO882 Trogopterus xanthipes Species Sciuridae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO18892 Salvinia molesta Species Salviniaceae Eukaryota n.a. n.a. n.a. Database[UNPD]

Note for Reference:
In addition to directly collecting NP source organism data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated them from below databases:
UNPD: Universal Natural Products Database [PMID: 23638153].
StreptomeDB: a database of streptomycetes natural products [PMID: 33051671].
TM-MC: a database of medicinal materials and chemical compounds in Northeast Asian traditional medicine [PMID: 26156871].
TCM@Taiwan: a Traditional Chinese Medicine database [PMID: 21253603].
TCMID: a Traditional Chinese Medicine database [PMID: 29106634].
TCMSP: The traditional Chinese medicine systems pharmacology database and analysis platform [PMID: 24735618].
HerDing: a herb recommendation system to treat diseases using genes and chemicals [PMID: 26980517].
MetaboLights: a metabolomics database [PMID: 27010336].
FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].



  NP Quantity Composition/Concentration

Organism ID Organism Name Organism Material Preparation Organism Part NP Quantity (Standard) NP Quantity (Minimum) NP Quantity (Maximum) Quantity Unit Reference
NPO14077 Chamaecyparis lawsoniana Oil Leaves 14.31 n.a. n.a. % PMID[37447036]
NPO42856 Salvia Sahendica Oil Roots 2.8 n.a. n.a. % PMID[39438657]
NPO45866 Taiwania flousiana Oil n.a. 6.52 n.a. n.a. % PMID[32093424]
NPO59065 Juniperus Thurifera Oil n.a. 1.15 n.a. n.a. % PMID[39266453]
NPO59065 Juniperus Thurifera Oil n.a. 0.75 n.a. n.a. % PMID[39266453]
NPO62555 Salvia fruticosa Oil n.a. 0.17 ± 0.00 n.a. n.a. % PMID[38001843]

Note for Reference:
In addition to directly collecting NP quantitative data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated NP quantitative records for specific NP domains (e.g., NPS from foods or herbs) from domain-specific databases. These databases include:
DUKE: Dr. Duke's Phytochemical and Ethnobotanical Databases.
PHENOL EXPLORER: is the first comprehensive database on polyphenol content in foods [PMID: 24103452], its homepage can be accessed at here.
FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].



 Biological Activity

Molecular-level activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference

In vitro activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference
NPT323 Cell line SW-620 Homo sapiens GI50 < 50.0 ug.mL-1 PMID[15808460]
NPT393 Cell line HCT-116 Homo sapiens GI50 < 50.0 ug.mL-1 PMID[15808460]
NPT82 Cell line MDA-MB-231 Homo sapiens GI50 < 50.0 ug.mL-1 PMID[15808460]
NPT370 Cell line NCI-H23 Homo sapiens GI50 < 50.0 ug.mL-1 PMID[15808460]
NPT81 Cell line A549 Homo sapiens GI50 < 50.0 ug.mL-1 PMID[15808460]
NPT81 Cell line A549 Homo sapiens ED50 = 6.47 ug ml-1 PMID[9014350]
NPT83 Cell line MCF7 Homo sapiens ED50 = 23.42 ug ml-1 PMID[9014350]
NPT139 Cell line HT-29 Homo sapiens ED50 = 6.43 ug ml-1 PMID[9014350]
NPT65 Cell line HepG2 Homo sapiens IC50 > 40000.0 nM PMID[20402524]
NPT116 Cell line HL-60 Homo sapiens IC50 > 40000.0 nM PMID[23691952]
NPT15 Cell line Jurkat Homo sapiens IC50 = 35100.0 nM PMID[20402524]
NPT466 Cell line U-937 Homo sapiens IC50 = 19700.0 nM PMID[20402524]
NPT783 Cell line MIA PaCa-2 Homo sapiens IC50 = 25900.0 nM PMID[21775156]
NPT660 Cell line SW480 Homo sapiens IC50 > 40000.0 nM PMID[23691952]
NPT83 Cell line MCF7 Homo sapiens IC50 > 40000.0 nM PMID[23691952]
NPT81 Cell line A549 Homo sapiens IC50 > 40000.0 nM PMID[23691952]
NPT659 Cell line SMMC-7721 Homo sapiens IC50 > 40000.0 nM PMID[23691952]
NPT171 Cell line MRC5 Homo sapiens GI50 = 40010.0 nM PMID[24210499]
NPT116 Cell line HL-60 Homo sapiens GI50 = 27330.0 nM PMID[24210499]
NPT306 Cell line PC-3 Homo sapiens GI50 = 56450.0 nM PMID[24210499]
NPT81 Cell line A549 Homo sapiens GI50 = 30670.0 nM PMID[24210499]
NPT65 Cell line HepG2 Homo sapiens EC50 > 25000.0 nM PMID[25316317]
NPT80 Cell line Raji Homo sapiens EC50 = 11490.0 nM PMID[25316317]
NPT1160 Cell line BJ Homo sapiens EC50 = 19570.0 nM PMID[25316317]
NPT71 Cell line HEK293 Homo sapiens EC50 > 25000.0 nM PMID[25316317]
NPT171 Cell line MRC5 Homo sapiens IC50 = 19000.0 nM PMID[25440884]
NPT196 Cell line AGS Homo sapiens IC50 = 18000.0 nM PMID[25440884]
NPT82 Cell line MDA-MB-231 Homo sapiens Activity = 4.4 % PMID[26241873]
NPT82 Cell line MDA-MB-231 Homo sapiens Activity = 85.8 % PMID[26241873]
NPT82 Cell line MDA-MB-231 Homo sapiens Activity = 9.6 % PMID[26241873]
NPT82 Cell line MDA-MB-231 Homo sapiens Activity = 0.2 % PMID[26241873]
NPT82 Cell line MDA-MB-231 Homo sapiens Activity = 29.7 % PMID[26241873]
NPT82 Cell line MDA-MB-231 Homo sapiens Activity = 19.54 % PMID[26241873]
NPT82 Cell line MDA-MB-231 Homo sapiens Activity = 50.76 % PMID[26241873]
NPT165 Cell line HeLa Homo sapiens IC50 = 64900.0 nM PMID[26638041]
NPT165 Cell line HeLa Homo sapiens Ratio IC50 = 1.4 n.a. PMID[26638041]
NPT15 Cell line Jurkat Homo sapiens IC50 = 48200.0 nM PMID[26638041]
NPT15 Cell line Jurkat Homo sapiens Ratio IC50 = 1.9 n.a. PMID[26638041]
NPT189 Cell line Vero Chlorocebus aethiops Ratio IC50 = 4.2 n.a. PMID[26638041]
NPT189 Cell line Vero Chlorocebus aethiops IC50 = 90400.0 nM PMID[26638041]
NPT139 Cell line HT-29 Homo sapiens IC50 = 39400.0 nM PMID[26905523]
NPT189 Cell line Vero Chlorocebus aethiops CC50 = 80400.0 nM PMID[17663539]
NPT6 Organism Plasmodium falciparum Plasmodium falciparum IC50 = 3.5 ug.mL-1 PMID[25316317]
NPT6 Organism Plasmodium falciparum Plasmodium falciparum IC50 = 0.9 ug.mL-1 PMID[31525705]
NPT79 Organism Bacillus subtilis Bacillus subtilis MIC > 250.0 ug.mL-1 PMID[11325249]
NPT79 Organism Bacillus subtilis Bacillus subtilis IZ > 7.0 mm PMID[11325249]
NPT20529 Non-molecular NON-PROTEIN TARGET n.a. GI50 = 21140.0 nM PMID[24210499]
NPT20529 Non-molecular NON-PROTEIN TARGET n.a. GI50 = 41130.0 nM PMID[24210499]
NPT20529 Non-molecular NON-PROTEIN TARGET n.a. Ratio EC50 = 4.6 n.a. PMID[25316317]
NPT20529 Non-molecular NON-PROTEIN TARGET n.a. Selectivity Index = 15.6 n.a. PMID[25316317]
NPT20529 Non-molecular NON-PROTEIN TARGET n.a. Selectivity Index > 65.0 n.a. PMID[25316317]
NPT20529 Non-molecular NON-PROTEIN TARGET n.a. Ratio EC50 = 8.6 n.a. PMID[25316317]
NPT20529 Non-molecular NON-PROTEIN TARGET n.a. IC50 = 21300.0 nM PMID[26638041]
NPT633 Organism Leishmania donovani Leishmania donovani IC50 = 45700.0 nM PMID[26905523]
NPT634 Organism Leishmania amazonensis Leishmania amazonensis IC50 = 15400.0 nM PMID[26905523]
NPT20529 Non-molecular NON-PROTEIN TARGET n.a. IC50 = 12200.0 nM PMID[27318121]
NPT633 Organism Leishmania donovani Leishmania donovani IC50 = 12200.0 nM PMID[30840453]
NPT564 Organism Listeria monocytogenes Listeria monocytogenes Inhibition = 0.0 % PMID[33378620]
NPT564 Organism Listeria monocytogenes Listeria monocytogenes Inhibition = 35.6 % PMID[33378620]
NPT564 Organism Listeria monocytogenes Listeria monocytogenes Inhibition = 60.9 % PMID[33378620]
NPT564 Organism Listeria monocytogenes Listeria monocytogenes Inhibition = 14.2 % PMID[33378620]
NPT22368 Organism Zika virus Zika virus Inhibition = 38.0 % PMID[35969814]
NPT22224 Cell line Vero C1008 Chlorocebus sabaeus CC100 > 50.0 ug ml-1 PMID[35969814]
NPT22368 Organism Zika virus Zika virus EC = 12.5 ug ml-1 PMID[35969814]
NPT22368 Organism Zika virus Zika virus Inhibition > 50.0 % PMID[35969814]
NPT1515 Organism SARS coronavirus SARS coronavirus EC50 = 1390.0 nM PMID[17663539]
NPT1515 Organism SARS coronavirus SARS coronavirus Inhibition < 25.0 % PMID[17663539]
NPT1515 Organism SARS coronavirus SARS coronavirus Inhibition = 25.0 % PMID[17663539]
NPT16 Organism Staphylococcus aureus Staphylococcus aureus MIC > 250.0 ug.mL-1 PMID[11325249]
NPT17 Organism Staphylococcus epidermidis Staphylococcus epidermidis MIC > 250.0 ug.mL-1 PMID[11325249]
NPT16 Organism Staphylococcus aureus Staphylococcus aureus IZ > 7.0 mm PMID[11325249]
NPT17 Organism Staphylococcus epidermidis Staphylococcus epidermidis IZ > 7.0 mm PMID[11325249]
NPT1 Others Radical scavenging activity n.a. deltaA = 0.081 n.a. PMID[10579867]
NPT1 Others Radical scavenging activity n.a. deltaA = 0.153 n.a. PMID[10579867]
NPT1 Others Radical scavenging activity n.a. deltaA = 0.255 n.a. PMID[10579867]
NPT757 Organism Plasmodium falciparum 3D7 Plasmodium falciparum 3D7 EC50 = 2470.0 nM PMID[25316317]
NPT16 Organism Staphylococcus aureus Staphylococcus aureus Inhibition = 0.0 % PMID[33378620]
NPT19 Organism Escherichia coli Escherichia coli Inhibition = 19.2 % PMID[33378620]
NPT16 Organism Staphylococcus aureus Staphylococcus aureus Inhibition = 27.9 % PMID[33378620]
NPT19 Organism Escherichia coli Escherichia coli Inhibition = 37.5 % PMID[33378620]
NPT18 Organism Pseudomonas aeruginosa Pseudomonas aeruginosa Inhibition = 45.2 % PMID[33378620]
NPT19 Organism Escherichia coli Escherichia coli Inhibition = 9.1 % PMID[33378620]
NPT18 Organism Pseudomonas aeruginosa Pseudomonas aeruginosa Inhibition = 53.2 % PMID[33378620]
NPT18 Organism Pseudomonas aeruginosa Pseudomonas aeruginosa Inhibition = 52.2 % PMID[33378620]
NPT18 Organism Pseudomonas aeruginosa Pseudomonas aeruginosa Inhibition = 20.3 % PMID[33378620]
NPT19 Organism Escherichia coli Escherichia coli Inhibition = 24.7 % PMID[33378620]
NPT16 Organism Staphylococcus aureus Staphylococcus aureus Inhibition = 38.5 % PMID[33378620]
NPT16 Organism Staphylococcus aureus Staphylococcus aureus Inhibition = 44.6 % PMID[33378620]
NPT28897 Organism Human alphaherpesvirus 1 Human alphaherpesvirus 1 Activity n.a. n.a. n.a. PMID[35969814]
NPT485 Organism Plasmodium falciparum (isolate K1 / Thailand) Plasmodium falciparum K1 IC50 = 900.0 nM PMID[25316317]
NPT1666 Organism Plasmodium falciparum D6 Plasmodium falciparum D6 IC50 = 4.2 ug.mL-1 PMID[25316317]
NPT1666 Organism Plasmodium falciparum D6 Plasmodium falciparum D6 IC50 = 1.95 ug.mL-1 PMID[25316317]
NPT485 Organism Plasmodium falciparum (isolate K1 / Thailand) Plasmodium falciparum K1 IC50 < 1.0 ug.mL-1 PMID[25316317]
NPT485 Organism Plasmodium falciparum (isolate K1 / Thailand) Plasmodium falciparum K1 EC50 = 1330.0 nM PMID[25316317]
NPT2 Others Unspecified n.a. Ratio IC50 = 0.9 n.a. PMID[26905523]
NPT2 Others Unspecified n.a. Ratio IC50 = 2.5 n.a. PMID[26905523]
NPT28359 Organism dengue virus type 2 dengue virus type 2 Inhibition = 28.0 % PMID[35969814]
NPT28359 Organism dengue virus type 2 dengue virus type 2 Inhibition > 50.0 % PMID[35969814]
NPT28359 Organism dengue virus type 2 dengue virus type 2 EC = 25.0 ug ml-1 PMID[35969814]
NPT28359 Organism dengue virus type 2 dengue virus type 2 EC = 12.5 ug ml-1 PMID[35969814]
NPT29320 Cell line BHK-21 Mesocricetus auratus CC100 > 50.0 ug ml-1 PMID[35969814]
NPT20632 Organism Chikungunya virus Chikungunya virus FC = 100.0 n.a. PMID[35969814]
NPT20632 Organism Chikungunya virus Chikungunya virus EC = 25.0 ug ml-1 PMID[35969814]
NPT2 Others Unspecified n.a. Ratio CC50/EC50 = 58.0 n.a. PMID[17663539]

In vivo activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference





 Experimental ADME

Experiment Model Experiment Tissue ADME Type ADME Relation ADME Value ADME Unit Reference





 Experimental Toxicity

Quantitative toxicity

Experiment Model Experiment Organism Toxicity Type Toxicity Relation Toxicity Value Toxicity Unit Reference
- Aedes aegypti LC50 = 3.0 ug.mL-1 PMID[9014350]
- Artemia salina LC50 = 42.3 ug.mL-1 PMID[9014350]

Common Abbreviations:
LC: Lethal Concentration; LD: Lethal Dose; LT:Lethal Time; NOAEL: No-observed-adverse-effect Level; BMDL: Benchmark Dose Lower Confidence Limit; BMD: Benchmark Dose; BMC:Benchmark Concentration; LOAEL: Lowest Observed Adverse Effect Level; RfD:Reference Dose; RfC:Reference Concentration; MRL: Minimal Risk Level; MEG: Maximum Exposure Guideline; PAC: Protective Action Criteria

Categorical toxicity labels

Hepatotoxicity Carcinogenicity Mutagenicity Cardiotoxicity Respiratory Toxicity Eye Irritation Endocrine Disruption
Hepatotoxicity Carcinogenicity Mutagenicity Cardiotoxicity Respiratory Toxicity Eye Irritation Endocrine Disruption

Note for Reference:
In addition to directly collecting NP quantitative data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated NP toxicity records from domain-specific databases. These databases include:
ToxValDB: a curated database that compiles quantitative toxicity values for chemicals from diverse public sources to support toxicological research and risk assessment.
TOXRIC: a comprehensive, free-to-access, online database providing toxicological/feature data. The toxicity labels are retrieved from this database. [PMID: 36400569]


  Chemically structural similarity

Similar Active Natural Products in NPASS

Top-200 similar NPs were calculated against the active-NP-set (includes approximately 50,000 NPs with experimentally-derived bioactivity available in NPASS)

Similarity is measured using the Tanimoto coefficient (Tc) , which compares the binary fingerprints of two molecules. Tc is calculated as the intersection divided by the union of '1' bits in the fingerprints, ranging from 0 to 1, with 1 indicating highest similarity.

●  The left chart: Distribution of similarity level between NPC260323 and all remaining natural products in the NPASS database.
●  The right table: Most similar natural products (Tc>=0.5 or Top200).

Similarity Score Similarity Level Natural Product ID
0.8261 Intermediate Similarity NPC176279
0.7755 Intermediate Similarity NPC11250
0.7755 Intermediate Similarity NPC192948
0.7755 Intermediate Similarity NPC35797
0.74 Intermediate Similarity NPC172219
0.74 Intermediate Similarity NPC304510
0.7255 Intermediate Similarity NPC137750
0.717 Intermediate Similarity NPC58560
0.6538 Remote Similarity NPC38893
0.6538 Remote Similarity NPC308311
0.6538 Remote Similarity NPC150601
0.6531 Remote Similarity NPC249018
0.6471 Remote Similarity NPC610523
0.6415 Remote Similarity NPC606176
0.6415 Remote Similarity NPC606869
0.6346 Remote Similarity NPC141782
0.6296 Remote Similarity NPC604431
0.6226 Remote Similarity NPC471671
0.6111 Remote Similarity NPC176130
0.6111 Remote Similarity NPC607220
0.6071 Remote Similarity NPC600507
0.5818 Remote Similarity NPC606689
0.5789 Remote Similarity NPC201069
0.5667 Remote Similarity NPC49742
0.5667 Remote Similarity NPC321822
0.5636 Remote Similarity NPC604866
0.5614 Remote Similarity NPC162935
0.5614 Remote Similarity NPC249340
0.5574 Remote Similarity NPC108164
0.5574 Remote Similarity NPC43000
0.5574 Remote Similarity NPC100414
0.5517 Remote Similarity NPC471187
0.5439 Remote Similarity NPC291001
0.5357 Remote Similarity NPC3009
0.5357 Remote Similarity NPC8776
0.5357 Remote Similarity NPC250323
0.5246 Remote Similarity NPC471852
0.5179 Remote Similarity NPC220596
0.5179 Remote Similarity NPC60408
0.5172 Remote Similarity NPC78364
0.5167 Remote Similarity NPC471851
0.5167 Remote Similarity NPC471077
0.5088 Remote Similarity NPC609413
0.5085 Remote Similarity NPC78307
0.5075 Remote Similarity NPC471668

Similar Clinical/Approved Drugs

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules.

●  The left chart: Distribution of similarity level between NPC260323 and all drugs/candidates.
●  The right table: Most similar clinical/approved drugs (Tc>=0.5 or Top200).

Similarity Score Similarity Level Drug ID Developmental Stage
NPD

Bioactivity similarity

  Bioactivity similarity

Similar Natural Products in NPASS

Similarity level is defined by Bioactivity similarity was calculated based on bioactivity descriptors of compounds. The bioactivity descriptors were calculated by a recently developed AI algorithm Chemical Checker (CC) [Nature Biotechnology, 38:1087–1096, 2020; Nature Communications, 12:3932, 2021], which evaluated bioactivity similarities at five levels:
A: chemistry similarity;
B: biological targets similarity;
C: networks similarity;
D: cell-based bioactivity similarity;
E: similarity based on clinical data.
Those 5 categories of CC bioactivity descriptors were calculated and then subjected to manifold projection using UMAP algorithm, to project all NPs on a 2-Dimensional space. The current NP was highlighted with a small circle in the 2-D map. Below figures: left-to-right, A-to-E.

A: chemistry similarity
B: biological targets similarity
C: networks similarity
D: cell-based bioactivity similarity
E: similarity based on clinical data