Structure

Physi-Chem Properties

Molecular Weight:  296.14
Volume:  313.506
LogP:  5.945
LogD:  3.87
LogS:  -3.916
# Rotatable Bonds:  0
TPSA:  53.6
# H-Bond Aceptor:  3
# H-Bond Donor:  2
# Rings:  4
# Heavy Atoms:  3

MedChem Properties

QED Drug-Likeness Score:  0.579
Synthetic Accessibility Score:  3.058
Fsp3:  0.368
Lipinski Rule-of-5:  Accepted
Pfizer Rule:  Rejected
GSK Rule:  Rejected
BMS Rule:  0
Golden Triangle Rule:  Accepted
Chelating Alert:  2
PAINS Alert:  1

ADMET Properties (ADMETlab2.0)

ADMET: Absorption

Caco-2 Permeability:  -4.877
MDCK Permeability:  1.666021671553608e-05
Pgp-inhibitor:  0.129
Pgp-substrate:  0.008
Human Intestinal Absorption (HIA):  0.035
20% Bioavailability (F20%):  0.128
30% Bioavailability (F30%):  0.051

ADMET: Distribution

Blood-Brain-Barrier Penetration (BBB):  0.037
Plasma Protein Binding (PPB):  98.59485626220703%
Volume Distribution (VD):  1.997
Pgp-substrate:  3.677635669708252%

ADMET: Metabolism

CYP1A2-inhibitor:  0.92
CYP1A2-substrate:  0.801
CYP2C19-inhibitor:  0.637
CYP2C19-substrate:  0.08
CYP2C9-inhibitor:  0.615
CYP2C9-substrate:  0.828
CYP2D6-inhibitor:  0.43
CYP2D6-substrate:  0.852
CYP3A4-inhibitor:  0.141
CYP3A4-substrate:  0.144

ADMET: Excretion

Clearance (CL):  4.362
Half-life (T1/2):  0.19

ADMET: Toxicity

hERG Blockers:  0.012
Human Hepatotoxicity (H-HT):  0.102
Drug-inuced Liver Injury (DILI):  0.822
AMES Toxicity:  0.173
Rat Oral Acute Toxicity:  0.754
Maximum Recommended Daily Dose:  0.226
Skin Sensitization:  0.914
Carcinogencity:  0.682
Eye Corrosion:  0.004
Eye Irritation:  0.881
Respiratory Toxicity:  0.792

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  Natural Product: NPC238861

Natural Product ID:  NPC238861
Common Name*:   1,6,6-Trimethyl-2,7,8,9-Tetrahydro-1H-Naphtho[1,2-G][1]Benzofuran-10,11-Dione
IUPAC Name:   1,6,6-trimethyl-2,7,8,9-tetrahydro-1H-naphtho[1,2-g][1]benzofuran-10,11-dione
Synonyms:  
Standard InCHIKey:  GVKKJJOMQCNPGB-UHFFFAOYSA-N
Standard InCHI:  InChI=1S/C19H20O3/c1-10-9-22-18-12-6-7-13-11(5-4-8-19(13,2)3)15(12)17(21)16(20)14(10)18/h6-7,10H,4-5,8-9H2,1-3H3
SMILES:  CC1COC2=C1C(=O)C(=O)c1c3CCCC(C)(C)c3ccc21
Synthetic Gene Cluster:   n.a.
ChEMBL Identifier:   CHEMBL1518673
PubChem CID:   496348
Chemical Classification**:  
  • CHEMONTID:0000000 [Organic compounds]
    • [CHEMONTID:0000012] Lipids and lipid-like molecules
      • [CHEMONTID:0000259] Prenol lipids
        • [CHEMONTID:0001551] Diterpenoids
          • [CHEMONTID:0002548] Tanshinones, isotanshinones, and derivatives

*Note: the InCHIKey will be temporarily assigned as the "Common Name" if no IUPAC name or alternative short name is available.
**Note: the Chemical Classification was calculated by NPClassifier Version 1.5. Reference: PMID:34662515.

  Species Source

Organism ID Organism Name Taxonomy Level Family SuperKingdom Isolation Part Collection Location Collection Time Reference
NPO5743 Salvia miltiorrhiza Species Lamiaceae Eukaryota n.a. root n.a. PMID[11374966]
NPO19451 Salvia prionitis Species Lamiaceae Eukaryota n.a. n.a. n.a. PMID[11473439]
NPO19451 Salvia prionitis Species Lamiaceae Eukaryota n.a. n.a. n.a. PMID[12141863]
NPO5743 Salvia miltiorrhiza Species Lamiaceae Eukaryota n.a. n.a. n.a. PMID[16038550]
NPO25813 Salvia przewalskii Species Lamiaceae Eukaryota n.a. whole plant n.a. PMID[17217287]
NPO5743 Salvia miltiorrhiza Species Lamiaceae Eukaryota n.a. n.a. n.a. PMID[17583950]
NPO5743 Salvia miltiorrhiza Species Lamiaceae Eukaryota n.a. n.a. n.a. PMID[18855446]
NPO5743 Salvia miltiorrhiza Species Lamiaceae Eukaryota n.a. n.a. n.a. PMID[20455578]
NPO14979 Salvia trijuga Species Lamiaceae Eukaryota n.a. n.a. n.a. PMID[20515057]
NPO5743 Salvia miltiorrhiza Species Lamiaceae Eukaryota n.a. n.a. n.a. PMID[21775156]
NPO14822 Salvia sclarea Species Lamiaceae Eukaryota n.a. n.a. n.a. PMID[22264035]
NPO5743 Salvia miltiorrhiza Species Lamiaceae Eukaryota n.a. n.a. n.a. PMID[23286284]
NPO5743 Salvia miltiorrhiza Species Lamiaceae Eukaryota n.a. n.a. n.a. PMID[24108414]
NPO5743 Salvia miltiorrhiza Species Lamiaceae Eukaryota n.a. n.a. n.a. PMID[27569393]
NPO5743 Salvia miltiorrhiza Species Lamiaceae Eukaryota n.a. n.a. n.a. PMID[29185738]
NPO5743 Salvia miltiorrhiza Species Lamiaceae Eukaryota n.a. n.a. n.a. PMID[30351923]
NPO5743 Salvia miltiorrhiza Species Lamiaceae Eukaryota n.a. root n.a. PMID[3655791]
NPO5743 Salvia miltiorrhiza Species Lamiaceae Eukaryota roots n.a. n.a. PMID[9834151]
NPO19925 Salvia sinica Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO11138 Veronicastrum sibiricum Species Plantaginaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO14213 Salvia bulleyana Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO5743 Salvia miltiorrhiza Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO16750 Salvia castanea Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO18449 Salvia yunnanensis Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO26049 Salvia digitaloides Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO25813 Salvia przewalskii Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO14979 Salvia trijuga Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO27947 Salvia flava Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO25813.1 Salvia przewalskii var. mandarinorum Varieties Lamiaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO14822 Salvia sclarea Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO2385 Salvia bowleyana Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO19451 Salvia prionitis Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO25813.1 Salvia przewalskii var. mandarinorum Varieties Lamiaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO19925 Salvia sinica Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO2385 Salvia bowleyana Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO14979 Salvia trijuga Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO14822 Salvia sclarea Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO16750 Salvia castanea Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO5743 Salvia miltiorrhiza Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO27947 Salvia flava Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO18449 Salvia yunnanensis Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO11138 Veronicastrum sibiricum Species Plantaginaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO14213 Salvia bulleyana Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO19451 Salvia prionitis Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO25813 Salvia przewalskii Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO26049 Salvia digitaloides Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO14822 Salvia sclarea Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO14979 Salvia trijuga Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO30139 Salvia przewalskll Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO5743 Salvia miltiorrhiza Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO11138 Veronicastrum sibiricum Species Plantaginaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO19451 Salvia prionitis Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO5743 Salvia miltiorrhiza Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO26049 Salvia digitaloides Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO19451 Salvia prionitis Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO14822 Salvia sclarea Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO25813 Salvia przewalskii Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO18449 Salvia yunnanensis Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO11138 Veronicastrum sibiricum Species Plantaginaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO16750 Salvia castanea Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO14979 Salvia trijuga Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO27947 Salvia flava Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO5743 Salvia miltiorrhiza Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]

☑ Note for Reference:
In addition to directly collecting NP source organism data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated them from below databases:
UNPD: Universal Natural Products Database [PMID: 23638153].
StreptomeDB: a database of streptomycetes natural products [PMID: 33051671].
TM-MC: a database of medicinal materials and chemical compounds in Northeast Asian traditional medicine [PMID: 26156871].
TCM@Taiwan: a Traditional Chinese Medicine database [PMID: 21253603].
TCMID: a Traditional Chinese Medicine database [PMID: 29106634].
TCMSP: The traditional Chinese medicine systems pharmacology database and analysis platform [PMID: 24735618].
HerDing: a herb recommendation system to treat diseases using genes and chemicals [PMID: 26980517].
MetaboLights: a metabolomics database [PMID: 27010336].
FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].

  NP Quantity Composition/Concentration

Organism ID NP ID Organism Material Preparation Organism Part NP Quantity (Standard) NP Quantity (Minimum) NP Quantity (Maximum) Quantity Unit Reference

☑ Note for Reference:
In addition to directly collecting NP quantitative data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated NP quantitative records for specific NP domains (e.g., NPS from foods or herbs) from domain-specific databases. These databases include:
DUKE: Dr. Duke's Phytochemical and Ethnobotanical Databases.
PHENOL EXPLORER: is the first comprehensive database on polyphenol content in foods [PMID: 24103452], its homepage can be accessed at here.
FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].

  Biological Activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference
NPT47 Individual Protein ATP-dependent DNA helicase Q1 Homo sapiens Potency = 12589.3 nM PMID[502959]
NPT149 Individual Protein Endoplasmic reticulum-associated amyloid beta-peptide-binding protein Homo sapiens Potency = 25118.9 nM PMID[502960]
NPT48 Individual Protein Lysine-specific demethylase 4D-like Homo sapiens Potency = 35481.3 nM PMID[502960]
NPT1226 Individual Protein Caspase-7 Homo sapiens Potency = 25118.9 nM PMID[502960]
NPT50 Individual Protein Tyrosyl-DNA phosphodiesterase 1 Homo sapiens Potency = 17782.8 nM PMID[502960]
NPT50 Individual Protein Tyrosyl-DNA phosphodiesterase 1 Homo sapiens Potency = 14125.4 nM PMID[502959]
NPT51 Individual Protein Microtubule-associated protein tau Homo sapiens Potency = 3981.1 nM PMID[502959]
NPT51 Individual Protein Microtubule-associated protein tau Homo sapiens Potency = 3981.1 nM PMID[502960]
NPT51 Individual Protein Microtubule-associated protein tau Homo sapiens Potency = 12589.3 nM PMID[502959]
NPT51 Individual Protein Microtubule-associated protein tau Homo sapiens Potency = 3548.1 nM PMID[502960]
NPT53 Individual Protein 4'-phosphopantetheinyl transferase ffp Bacillus subtilis Potency = 19952.6 nM PMID[502960]
NPT442 Individual Protein Ferritin light chain Equus caballus Potency = 35481.3 nM PMID[502959]
NPT51 Individual Protein Microtubule-associated protein tau Homo sapiens Potency = 7943.3 nM PMID[502960]
NPT55 Individual Protein Putative fructose-1,6-bisphosphate aldolase Giardia intestinalis Potency = 9976.3 nM PMID[502959]
NPT55 Individual Protein Putative fructose-1,6-bisphosphate aldolase Giardia intestinalis Potency = 1581.1 nM PMID[502960]
NPT151 Individual Protein 15-hydroxyprostaglandin dehydrogenase [NAD+] Homo sapiens Potency = 19952.6 nM PMID[502959]
NPT151 Individual Protein 15-hydroxyprostaglandin dehydrogenase [NAD+] Homo sapiens Potency = 28183.8 nM PMID[502960]
NPT58 Individual Protein Bloom syndrome protein Homo sapiens Potency = 39810.7 nM PMID[502959]
NPT109 Individual Protein Cytochrome P450 3A4 Homo sapiens Potency = 15848.9 nM PMID[502960]
NPT47 Individual Protein ATP-dependent DNA helicase Q1 Homo sapiens Potency = 100000.0 nM PMID[502959]
NPT443 Individual Protein Histone acetyltransferase GCN5 Homo sapiens Potency n.a. 28183.8 nM PMID[502959]
NPT443 Individual Protein Histone acetyltransferase GCN5 Homo sapiens Potency n.a. 28183.8 nM PMID[502960]
NPT5 Individual Protein Histone-lysine N-methyltransferase, H3 lysine-9 specific 3 Homo sapiens Potency n.a. 7079.5 nM PMID[502959]
NPT1139 Individual Protein Arachidonate 15-lipoxygenase, type II Homo sapiens Potency n.a. 25118.9 nM PMID[502960]
NPT198 Individual Protein Vitamin D receptor Homo sapiens Potency n.a. 7079.5 nM PMID[502960]
NPT198 Individual Protein Vitamin D receptor Homo sapiens Potency n.a. 7079.5 nM PMID[502959]
NPT199 Individual Protein DNA polymerase kappa Homo sapiens Potency n.a. 28183.8 nM PMID[502959]
NPT199 Individual Protein DNA polymerase kappa Homo sapiens Potency n.a. 19952.6 nM PMID[502960]
NPT444 Individual Protein Ubiquitin carboxyl-terminal hydrolase 1 Homo sapiens Potency n.a. 79432.8 nM PMID[502960]
NPT198 Individual Protein Vitamin D receptor Homo sapiens Potency n.a. 19952.6 nM PMID[502959]
NPT198 Individual Protein Vitamin D receptor Homo sapiens Potency n.a. 15848.9 nM PMID[502959]
NPT198 Individual Protein Vitamin D receptor Homo sapiens Potency n.a. 14125.4 nM PMID[502959]
NPT50 Individual Protein Tyrosyl-DNA phosphodiesterase 1 Homo sapiens Potency n.a. 12995.3 nM PMID[502960]
NPT50 Individual Protein Tyrosyl-DNA phosphodiesterase 1 Homo sapiens Potency n.a. 23109.3 nM PMID[502960]
NPT49 Individual Protein DNA-(apurinic or apyrimidinic site) lyase Homo sapiens Potency n.a. 39810.7 nM PMID[502959]
NPT197 Protein-Protein Interaction Menin/Histone-lysine N-methyltransferase MLL Homo sapiens Potency = 35481.3 nM PMID[502959]
NPT2 Others Unspecified Potency = 28183.8 nM PMID[502959]
NPT791 Individual Protein Cruzipain Trypanosoma cruzi Potency = 39810.7 nM PMID[502960]
NPT94 Individual Protein Aldehyde dehydrogenase 1A1 Homo sapiens Potency = 22387.2 nM PMID[502959]
NPT94 Individual Protein Aldehyde dehydrogenase 1A1 Homo sapiens Potency = 10000.0 nM PMID[502960]
NPT197 Protein-Protein Interaction Menin/Histone-lysine N-methyltransferase MLL Homo sapiens Potency = 19952.6 nM PMID[502960]
NPT197 Protein-Protein Interaction Menin/Histone-lysine N-methyltransferase MLL Homo sapiens Potency = 17782.8 nM PMID[502959]

☑ Note for Activity Records:
☉ The quantitative biological activities were primarily integrated from ChEMBL (Version-30) database and were also directly collected from PubMed literature. PubMed PMID was provided as the reference link for each activity record.

  Chemically structural similarity: I. Similar Active Natural Products in NPASS

Top-200 similar NPs were calculated against the active-NP-set (includes 4,3285 NPs with experimentally-derived bioactivity available in NPASS)

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules. Tc lies between [0, 1] where '1' indicates the highest similarity. What is Tanimoto coefficient

●  The left chart: Distribution of similarity level between NPC238861 and all remaining natural products in the NPASS database.
●  The right table: Most similar natural products (Tc>=0.56 or Top200).

Similarity Score Similarity Level Natural Product ID
1.0 High Similarity NPC77000
0.9655 High Similarity NPC51079
0.9478 High Similarity NPC988
0.9478 High Similarity NPC289432
0.9397 High Similarity NPC144547
0.9211 High Similarity NPC135730
0.9123 High Similarity NPC228936
0.8983 High Similarity NPC232958
0.8947 High Similarity NPC13784
0.8889 High Similarity NPC310662
0.8879 High Similarity NPC226093
0.887 High Similarity NPC196075
0.8793 High Similarity NPC474095
0.8707 High Similarity NPC477411
0.8527 High Similarity NPC212207
0.839 Intermediate Similarity NPC326664
0.8376 Intermediate Similarity NPC212415
0.832 Intermediate Similarity NPC295664
0.8319 Intermediate Similarity NPC470764
0.8264 Intermediate Similarity NPC80605
0.8264 Intermediate Similarity NPC323440
0.8264 Intermediate Similarity NPC222968
0.8244 Intermediate Similarity NPC23894
0.8235 Intermediate Similarity NPC241851
0.8189 Intermediate Similarity NPC51292
0.8182 Intermediate Similarity NPC309056
0.8167 Intermediate Similarity NPC474408
0.8154 Intermediate Similarity NPC239134
0.8151 Intermediate Similarity NPC143768
0.8145 Intermediate Similarity NPC50872
0.8145 Intermediate Similarity NPC472981
0.814 Intermediate Similarity NPC471832
0.8136 Intermediate Similarity NPC210089
0.8125 Intermediate Similarity NPC115797
0.8125 Intermediate Similarity NPC51448
0.8115 Intermediate Similarity NPC45794
0.8115 Intermediate Similarity NPC61651
0.811 Intermediate Similarity NPC476599
0.8106 Intermediate Similarity NPC474659
0.8095 Intermediate Similarity NPC328107
0.8017 Intermediate Similarity NPC221275
0.8015 Intermediate Similarity NPC164295
0.8 Intermediate Similarity NPC128368
0.8 Intermediate Similarity NPC131684
0.7984 Intermediate Similarity NPC204784
0.7984 Intermediate Similarity NPC478162
0.7984 Intermediate Similarity NPC478165
0.7983 Intermediate Similarity NPC265513
0.7983 Intermediate Similarity NPC137315
0.7983 Intermediate Similarity NPC474057
0.7955 Intermediate Similarity NPC472656
0.7955 Intermediate Similarity NPC183103
0.7953 Intermediate Similarity NPC85511
0.7934 Intermediate Similarity NPC307651
0.7926 Intermediate Similarity NPC119542
0.792 Intermediate Similarity NPC473243
0.792 Intermediate Similarity NPC476225
0.7917 Intermediate Similarity NPC79496
0.7917 Intermediate Similarity NPC471188
0.7917 Intermediate Similarity NPC280789
0.7903 Intermediate Similarity NPC318173
0.7899 Intermediate Similarity NPC273837
0.7895 Intermediate Similarity NPC203486
0.7895 Intermediate Similarity NPC329913
0.7891 Intermediate Similarity NPC75432
0.7881 Intermediate Similarity NPC470391
0.7879 Intermediate Similarity NPC472394
0.7869 Intermediate Similarity NPC210092
0.7852 Intermediate Similarity NPC471670
0.7851 Intermediate Similarity NPC470253
0.7846 Intermediate Similarity NPC428300
0.784 Intermediate Similarity NPC202015
0.7833 Intermediate Similarity NPC291799
0.7833 Intermediate Similarity NPC474157
0.7829 Intermediate Similarity NPC328997
0.7829 Intermediate Similarity NPC470765
0.7829 Intermediate Similarity NPC294050
0.7823 Intermediate Similarity NPC228318
0.7815 Intermediate Similarity NPC83628
0.7815 Intermediate Similarity NPC265407
0.7812 Intermediate Similarity NPC318067
0.7803 Intermediate Similarity NPC470278
0.7797 Intermediate Similarity NPC30594
0.7797 Intermediate Similarity NPC37622
0.7795 Intermediate Similarity NPC167323
0.7795 Intermediate Similarity NPC269923
0.7787 Intermediate Similarity NPC67377
0.7787 Intermediate Similarity NPC196673
0.7769 Intermediate Similarity NPC474737
0.7769 Intermediate Similarity NPC470753
0.7769 Intermediate Similarity NPC270699
0.7769 Intermediate Similarity NPC473220
0.7769 Intermediate Similarity NPC82899
0.7769 Intermediate Similarity NPC169913
0.7761 Intermediate Similarity NPC59459
0.7761 Intermediate Similarity NPC126516
0.776 Intermediate Similarity NPC254233
0.7752 Intermediate Similarity NPC472693
0.7752 Intermediate Similarity NPC472694
0.775 Intermediate Similarity NPC214067
0.775 Intermediate Similarity NPC196246
0.7746 Intermediate Similarity NPC478163
0.7744 Intermediate Similarity NPC279596
0.7744 Intermediate Similarity NPC477412
0.7742 Intermediate Similarity NPC190298
0.7731 Intermediate Similarity NPC203732
0.7727 Intermediate Similarity NPC147561
0.7727 Intermediate Similarity NPC57552
0.7727 Intermediate Similarity NPC82712
0.7724 Intermediate Similarity NPC215419
0.7719 Intermediate Similarity NPC239185
0.7717 Intermediate Similarity NPC97566
0.7712 Intermediate Similarity NPC209632
0.7712 Intermediate Similarity NPC471186
0.771 Intermediate Similarity NPC316553
0.7698 Intermediate Similarity NPC476645
0.7692 Intermediate Similarity NPC236405
0.7692 Intermediate Similarity NPC275576
0.7692 Intermediate Similarity NPC9180
0.7692 Intermediate Similarity NPC100402
0.7687 Intermediate Similarity NPC165612
0.7687 Intermediate Similarity NPC476644
0.7686 Intermediate Similarity NPC1082
0.7686 Intermediate Similarity NPC167504
0.7686 Intermediate Similarity NPC305912
0.768 Intermediate Similarity NPC152812
0.7676 Intermediate Similarity NPC281398
0.7674 Intermediate Similarity NPC325740
0.7674 Intermediate Similarity NPC472704
0.7669 Intermediate Similarity NPC72915
0.7667 Intermediate Similarity NPC17417
0.7667 Intermediate Similarity NPC469636
0.7667 Intermediate Similarity NPC10251
0.7661 Intermediate Similarity NPC471616
0.7661 Intermediate Similarity NPC260886
0.766 Intermediate Similarity NPC245522
0.766 Intermediate Similarity NPC114513
0.766 Intermediate Similarity NPC290038
0.7652 Intermediate Similarity NPC59502
0.7652 Intermediate Similarity NPC134882
0.7647 Intermediate Similarity NPC472551
0.7647 Intermediate Similarity NPC472545
0.7642 Intermediate Similarity NPC471721
0.7634 Intermediate Similarity NPC177925
0.763 Intermediate Similarity NPC470406
0.7627 Intermediate Similarity NPC114594
0.7623 Intermediate Similarity NPC292834
0.7609 Intermediate Similarity NPC475400
0.7606 Intermediate Similarity NPC478160
0.7606 Intermediate Similarity NPC478166
0.7603 Intermediate Similarity NPC251854
0.7603 Intermediate Similarity NPC93084
0.7597 Intermediate Similarity NPC472703
0.7594 Intermediate Similarity NPC49272
0.7591 Intermediate Similarity NPC39549
0.7591 Intermediate Similarity NPC232996
0.7591 Intermediate Similarity NPC307401
0.7589 Intermediate Similarity NPC478164
0.7589 Intermediate Similarity NPC117674
0.7586 Intermediate Similarity NPC476042
0.7583 Intermediate Similarity NPC56493
0.7583 Intermediate Similarity NPC470007
0.7583 Intermediate Similarity NPC112903
0.7581 Intermediate Similarity NPC93181
0.7576 Intermediate Similarity NPC72667
0.7574 Intermediate Similarity NPC473399
0.7574 Intermediate Similarity NPC473216
0.7569 Intermediate Similarity NPC192069
0.7569 Intermediate Similarity NPC95526
0.7565 Intermediate Similarity NPC265220
0.7561 Intermediate Similarity NPC469547
0.7561 Intermediate Similarity NPC272524
0.7561 Intermediate Similarity NPC93287
0.7557 Intermediate Similarity NPC121272
0.7557 Intermediate Similarity NPC470818
0.7556 Intermediate Similarity NPC477406
0.7556 Intermediate Similarity NPC477407
0.7554 Intermediate Similarity NPC470407
0.7542 Intermediate Similarity NPC89886
0.7542 Intermediate Similarity NPC60679
0.7542 Intermediate Similarity NPC301943
0.7542 Intermediate Similarity NPC474365
0.7542 Intermediate Similarity NPC247976
0.7541 Intermediate Similarity NPC475002
0.7541 Intermediate Similarity NPC95126
0.754 Intermediate Similarity NPC268930
0.7538 Intermediate Similarity NPC178382
0.7536 Intermediate Similarity NPC186647
0.7536 Intermediate Similarity NPC472395
0.7536 Intermediate Similarity NPC471542
0.7536 Intermediate Similarity NPC472371
0.7536 Intermediate Similarity NPC118366
0.7535 Intermediate Similarity NPC471451
0.7521 Intermediate Similarity NPC474364
0.7521 Intermediate Similarity NPC99846
0.7521 Intermediate Similarity NPC70624
0.7521 Intermediate Similarity NPC269023
0.7521 Intermediate Similarity NPC109514
0.7521 Intermediate Similarity NPC476993
0.7521 Intermediate Similarity NPC192577

  Chemically structural similarity: II. Similar Clinical/Approved Drugs

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules.

●  The left chart: Distribution of similarity level between NPC238861 and all drugs/candidates.
●  The right table: Most similar clinical/approved drugs (Tc>=0.56 or Top200).

Similarity Score Similarity Level Drug ID Developmental Stage
1.0 High Similarity NPD3412 Clinical (unspecified phase)
0.8376 Intermediate Similarity NPD1609 Clinical (unspecified phase)
0.8 Intermediate Similarity NPD7457 Clinical (unspecified phase)
0.8 Intermediate Similarity NPD5952 Clinical (unspecified phase)
0.7983 Intermediate Similarity NPD2181 Clinical (unspecified phase)
0.7734 Intermediate Similarity NPD3972 Approved
0.7727 Intermediate Similarity NPD7008 Discontinued
0.7724 Intermediate Similarity NPD5951 Approved
0.7719 Intermediate Similarity NPD3495 Discontinued
0.7667 Intermediate Similarity NPD2182 Approved
0.7519 Intermediate Similarity NPD6287 Discontinued
0.75 Intermediate Similarity NPD7163 Clinical (unspecified phase)
0.7481 Intermediate Similarity NPD1876 Approved
0.7422 Intermediate Similarity NPD1651 Approved
0.7419 Intermediate Similarity NPD6858 Approved
0.7419 Intermediate Similarity NPD7094 Approved
0.7398 Intermediate Similarity NPD4141 Clinical (unspecified phase)
0.7343 Intermediate Similarity NPD7236 Approved
0.7333 Intermediate Similarity NPD164 Approved
0.7324 Intermediate Similarity NPD7003 Approved
0.7288 Intermediate Similarity NPD1238 Approved
0.7252 Intermediate Similarity NPD1281 Approved
0.7236 Intermediate Similarity NPD6831 Clinical (unspecified phase)
0.7234 Intermediate Similarity NPD2346 Discontinued
0.7231 Intermediate Similarity NPD2932 Approved
0.7226 Intermediate Similarity NPD7713 Phase 3
0.7226 Intermediate Similarity NPD8032 Phase 2
0.7211 Intermediate Similarity NPD7239 Suspended
0.7197 Intermediate Similarity NPD4878 Approved
0.7192 Intermediate Similarity NPD6273 Approved
0.719 Intermediate Similarity NPD5909 Discontinued
0.7177 Intermediate Similarity NPD2067 Discontinued
0.7174 Intermediate Similarity NPD2979 Phase 3
0.7154 Intermediate Similarity NPD3024 Approved
0.7154 Intermediate Similarity NPD3025 Approved
0.7132 Intermediate Similarity NPD7055 Discontinued
0.7113 Intermediate Similarity NPD2343 Clinical (unspecified phase)
0.7111 Intermediate Similarity NPD2798 Approved
0.7109 Intermediate Similarity NPD3317 Approved
0.7107 Intermediate Similarity NPD1931 Clinical (unspecified phase)
0.7107 Intermediate Similarity NPD1929 Approved
0.7107 Intermediate Similarity NPD1930 Approved
0.7099 Intermediate Similarity NPD3019 Approved
0.709 Intermediate Similarity NPD1283 Approved
0.7087 Intermediate Similarity NPD1241 Discontinued
0.7077 Intermediate Similarity NPD7009 Phase 2
0.7069 Intermediate Similarity NPD7631 Approved
0.7047 Intermediate Similarity NPD7458 Discontinued
0.7045 Intermediate Similarity NPD3023 Approved
0.7045 Intermediate Similarity NPD3026 Approved
0.7034 Intermediate Similarity NPD1989 Approved
0.7031 Intermediate Similarity NPD690 Clinical (unspecified phase)
0.7031 Intermediate Similarity NPD2629 Approved
0.7023 Intermediate Similarity NPD5691 Approved
0.7 Intermediate Similarity NPD2066 Phase 3
0.7 Intermediate Similarity NPD7610 Discontinued
0.6993 Remote Similarity NPD1471 Phase 3
0.6992 Remote Similarity NPD1547 Clinical (unspecified phase)
0.6985 Remote Similarity NPD6007 Clinical (unspecified phase)
0.6983 Remote Similarity NPD7609 Phase 3
0.6977 Remote Similarity NPD4198 Discontinued
0.6972 Remote Similarity NPD2799 Discontinued
0.6966 Remote Similarity NPD4628 Phase 3
0.6923 Remote Similarity NPD2531 Phase 2
0.6923 Remote Similarity NPD2438 Suspended
0.6911 Remote Similarity NPD1237 Approved
0.6906 Remote Similarity NPD2313 Discontinued
0.6906 Remote Similarity NPD3764 Approved
0.6889 Remote Similarity NPD5327 Phase 3
0.6875 Remote Similarity NPD7702 Clinical (unspecified phase)
0.6857 Remote Similarity NPD6663 Approved
0.6857 Remote Similarity NPD7961 Discontinued
0.6849 Remote Similarity NPD8166 Discontinued
0.6835 Remote Similarity NPD6039 Approved
0.6822 Remote Similarity NPD6010 Discontinued
0.6821 Remote Similarity NPD6591 Clinical (unspecified phase)
0.6821 Remote Similarity NPD5808 Clinical (unspecified phase)
0.6821 Remote Similarity NPD3226 Approved
0.6818 Remote Similarity NPD5616 Clinical (unspecified phase)
0.6818 Remote Similarity NPD7741 Discontinued
0.6812 Remote Similarity NPD5736 Approved
0.6806 Remote Similarity NPD2796 Approved
0.6791 Remote Similarity NPD4879 Approved
0.6788 Remote Similarity NPD3267 Approved
0.6788 Remote Similarity NPD3266 Approved
0.6783 Remote Similarity NPD650 Approved
0.6781 Remote Similarity NPD7421 Clinical (unspecified phase)
0.6774 Remote Similarity NPD7057 Phase 3
0.6774 Remote Similarity NPD7058 Phase 2
0.6767 Remote Similarity NPD4196 Clinical (unspecified phase)
0.6767 Remote Similarity NPD5585 Approved
0.6748 Remote Similarity NPD1932 Approved
0.6741 Remote Similarity NPD1201 Approved
0.6739 Remote Similarity NPD2788 Approved
0.6736 Remote Similarity NPD3748 Approved
0.6716 Remote Similarity NPD5126 Approved
0.6716 Remote Similarity NPD4626 Approved
0.6716 Remote Similarity NPD5125 Phase 3
0.6716 Remote Similarity NPD17 Approved
0.6694 Remote Similarity NPD5700 Clinical (unspecified phase)
0.6693 Remote Similarity NPD2329 Discontinued
0.669 Remote Similarity NPD4307 Phase 2
0.669 Remote Similarity NPD6100 Approved
0.669 Remote Similarity NPD4140 Approved
0.669 Remote Similarity NPD6099 Approved
0.6667 Remote Similarity NPD1693 Approved
0.6667 Remote Similarity NPD2532 Approved
0.6667 Remote Similarity NPD1470 Approved
0.6667 Remote Similarity NPD2533 Approved
0.6667 Remote Similarity NPD2534 Approved
0.6667 Remote Similarity NPD2797 Approved
0.6667 Remote Similarity NPD3268 Approved
0.6667 Remote Similarity NPD2800 Approved
0.6645 Remote Similarity NPD7819 Suspended
0.6644 Remote Similarity NPD2344 Approved
0.6643 Remote Similarity NPD6832 Phase 2
0.6639 Remote Similarity NPD1088 Approved
0.6638 Remote Similarity NPD1087 Approved
0.6621 Remote Similarity NPD7305 Phase 1
0.6619 Remote Similarity NPD5740 Clinical (unspecified phase)
0.6619 Remote Similarity NPD6085 Phase 2
0.6583 Remote Similarity NPD1202 Approved
0.6583 Remote Similarity NPD5122 Clinical (unspecified phase)
0.6577 Remote Similarity NPD3295 Clinical (unspecified phase)
0.6575 Remote Similarity NPD4476 Approved
0.6575 Remote Similarity NPD4477 Approved
0.6573 Remote Similarity NPD3142 Approved
0.6573 Remote Similarity NPD3140 Approved
0.6571 Remote Similarity NPD7084 Phase 3
0.6569 Remote Similarity NPD1608 Approved
0.6567 Remote Similarity NPD9545 Approved
0.6558 Remote Similarity NPD6599 Discontinued
0.6558 Remote Similarity NPD7028 Phase 2
0.6556 Remote Similarity NPD7004 Clinical (unspecified phase)
0.6556 Remote Similarity NPD4378 Clinical (unspecified phase)
0.6541 Remote Similarity NPD5494 Approved
0.6541 Remote Similarity NPD405 Clinical (unspecified phase)
0.6529 Remote Similarity NPD688 Clinical (unspecified phase)
0.6528 Remote Similarity NPD4618 Approved
0.6528 Remote Similarity NPD4622 Approved
0.6522 Remote Similarity NPD4359 Approved
0.6515 Remote Similarity NPD4766 Approved
0.651 Remote Similarity NPD3750 Approved
0.651 Remote Similarity NPD6398 Clinical (unspecified phase)
0.6508 Remote Similarity NPD3048 Approved
0.6508 Remote Similarity NPD3046 Approved
0.6508 Remote Similarity NPD3047 Approved
0.6507 Remote Similarity NPD4308 Phase 3
0.6507 Remote Similarity NPD1509 Clinical (unspecified phase)
0.6503 Remote Similarity NPD7799 Discontinued
0.65 Remote Similarity NPD1508 Approved
0.65 Remote Similarity NPD4624 Approved
0.65 Remote Similarity NPD6959 Discontinued
0.6497 Remote Similarity NPD8443 Clinical (unspecified phase)
0.6497 Remote Similarity NPD5978 Approved
0.6497 Remote Similarity NPD5977 Approved
0.6493 Remote Similarity NPD6065 Approved
0.6483 Remote Similarity NPD6651 Approved
0.6483 Remote Similarity NPD3528 Clinical (unspecified phase)
0.6483 Remote Similarity NPD1607 Approved
0.6475 Remote Similarity NPD2199 Approved
0.6475 Remote Similarity NPD5667 Approved
0.6475 Remote Similarity NPD2198 Approved
0.6471 Remote Similarity NPD3672 Approved
0.6471 Remote Similarity NPD1090 Approved
0.6471 Remote Similarity NPD1086 Approved
0.6471 Remote Similarity NPD1778 Approved
0.6471 Remote Similarity NPD3673 Approved
0.6471 Remote Similarity NPD1089 Approved
0.6467 Remote Similarity NPD2309 Approved
0.6463 Remote Similarity NPD2935 Discontinued
0.6458 Remote Similarity NPD3373 Approved
0.6449 Remote Similarity NPD6637 Approved
0.6447 Remote Similarity NPD7422 Clinical (unspecified phase)
0.6446 Remote Similarity NPD1563 Approved
0.6444 Remote Similarity NPD3091 Approved
0.6444 Remote Similarity NPD2106 Clinical (unspecified phase)
0.6442 Remote Similarity NPD7473 Discontinued
0.6438 Remote Similarity NPD5688 Approved
0.6438 Remote Similarity NPD5689 Approved
0.6429 Remote Similarity NPD6647 Phase 2
0.6423 Remote Similarity NPD3897 Approved
0.6423 Remote Similarity NPD3898 Approved
0.6423 Remote Similarity NPD3896 Approved
0.6423 Remote Similarity NPD3895 Approved
0.6418 Remote Similarity NPD4230 Clinical (unspecified phase)
0.6414 Remote Similarity NPD5735 Approved
0.6414 Remote Similarity NPD6355 Discontinued
0.641 Remote Similarity NPD9259 Approved
0.641 Remote Similarity NPD9257 Approved
0.6406 Remote Similarity NPD3134 Approved
0.6403 Remote Similarity NPD5157 Phase 1
0.6403 Remote Similarity NPD5159 Phase 2
0.6403 Remote Similarity NPD5158 Clinical (unspecified phase)
0.64 Remote Similarity NPD4110 Phase 3
0.64 Remote Similarity NPD4109 Clinical (unspecified phase)
0.6395 Remote Similarity NPD1510 Phase 2
0.6393 Remote Similarity NPD6049 Phase 2
0.6393 Remote Similarity NPD6048 Clinical (unspecified phase)
0.6387 Remote Similarity NPD2651 Approved

  Bioactivity similarity: Similar Natural Products in NPASS

Bioactivity similarity was calculated based on bioactivity descriptors of compounds. The bioactivity descriptors were calculated by a recently developed AI algorithm Chemical Checker (CC) [Nature Biotechnology, 38:1087–1096, 2020; Nature Communications, 12:3932, 2021], which evaluated bioactivity similarities at five levels:
A: chemistry similarity;
B: biological targets similarity;
C: networks similarity;
D: cell-based bioactivity similarity;
E: similarity based on clinical data.

Those 5 categories of CC bioactivity descriptors were calculated and then subjected to manifold projection using UMAP algorithm, to project all NPs on a 2-Dimensional space. The current NP was highlighted with a small circle in the 2-D map. Below figures: left-to-right, A-to-E.

A: chemistry similarity
B: biological targets similarity
C: networks similarity
D: cell-based bioactivity similarity
E: similarity based on clinical data