Structure

Physi-Chem Properties

Molecular Weight:  190.1
Volume:  206.03
LogP:  3.226
LogD:  2.716
LogS:  -2.696
# Rotatable Bonds:  3
TPSA:  26.3
# H-Bond Aceptor:  2
# H-Bond Donor:  0
# Rings:  2
# Heavy Atoms:  2

MedChem Properties

QED Drug-Likeness Score:  0.684
Synthetic Accessibility Score:  2.557
Fsp3:  0.417
Lipinski Rule-of-5:  Accepted
Pfizer Rule:  Rejected
GSK Rule:  Accepted
BMS Rule:  0
Golden Triangle Rule:  Rejected
Chelating Alert:  0
PAINS Alert:  0

ADMET Properties (ADMETlab2.0)

ADMET: Absorption

Caco-2 Permeability:  -4.503
MDCK Permeability:  2.3788841645000502e-05
Pgp-inhibitor:  0.008
Pgp-substrate:  0.001
Human Intestinal Absorption (HIA):  0.004
20% Bioavailability (F20%):  0.011
30% Bioavailability (F30%):  0.582

ADMET: Distribution

Blood-Brain-Barrier Penetration (BBB):  0.216
Plasma Protein Binding (PPB):  95.07659912109375%
Volume Distribution (VD):  1.857
Pgp-substrate:  4.529201030731201%

ADMET: Metabolism

CYP1A2-inhibitor:  0.768
CYP1A2-substrate:  0.907
CYP2C19-inhibitor:  0.885
CYP2C19-substrate:  0.602
CYP2C9-inhibitor:  0.711
CYP2C9-substrate:  0.924
CYP2D6-inhibitor:  0.036
CYP2D6-substrate:  0.237
CYP3A4-inhibitor:  0.198
CYP3A4-substrate:  0.214

ADMET: Excretion

Clearance (CL):  6.61
Half-life (T1/2):  0.304

ADMET: Toxicity

hERG Blockers:  0.022
Human Hepatotoxicity (H-HT):  0.036
Drug-inuced Liver Injury (DILI):  0.424
AMES Toxicity:  0.074
Rat Oral Acute Toxicity:  0.101
Maximum Recommended Daily Dose:  0.045
Skin Sensitization:  0.412
Carcinogencity:  0.49
Eye Corrosion:  0.207
Eye Irritation:  0.975
Respiratory Toxicity:  0.12

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General Info & Identifiers & Properties  
Structure MOL file  
Source Organisms  
Biological Activities  
Similar NPs/Drugs  

  Natural Product: NPC83628

Natural Product ID:  NPC83628
Common Name*:   Rac-3-N-Butylphthalide
IUPAC Name:   3-butyl-3H-2-benzofuran-1-one
Synonyms:   N-Butylphthalide
Standard InCHIKey:  HJXMNVQARNZTEE-UHFFFAOYSA-N
Standard InCHI:  InChI=1S/C12H14O2/c1-2-3-8-11-9-6-4-5-7-10(9)12(13)14-11/h4-7,11H,2-3,8H2,1H3
SMILES:  CCCCC1OC(=O)c2c1cccc2
Synthetic Gene Cluster:   n.a.
ChEMBL Identifier:   CHEMBL248594
PubChem CID:   61361
Chemical Classification**:  
  • CHEMONTID:0000000 [Organic compounds]
    • [CHEMONTID:0000002] Organoheterocyclic compounds
      • [CHEMONTID:0000301] Benzofurans
        • [CHEMONTID:0001578] Benzofuranones

*Note: the InCHIKey will be temporarily assigned as the "Common Name" if no IUPAC name or alternative short name is available.
**Note: the Chemical Classification was calculated by NPClassifier Version 1.5. Reference: PMID:34662515.

  Species Source

Organism ID Organism Name Taxonomy Level Family SuperKingdom Isolation Part Collection Location Collection Time Reference
NPO26721 Apium graveolens Species Apiaceae Eukaryota n.a. n.a. n.a. DOI[10.1016/j.jfca.2004.07.004]
NPO26721 Apium graveolens Species Apiaceae Eukaryota n.a. n.a. n.a. DOI[10.1016/j.jfca.2005.08.001]
NPO26721 Apium graveolens Species Apiaceae Eukaryota n.a. n.a. 1996-Sep PMID[10352947]
NPO11438 Angelica gigas Species Apiaceae Eukaryota n.a. root n.a. PMID[11374978]
NPO11438 Angelica gigas Species Apiaceae Eukaryota n.a. n.a. n.a. PMID[15679317]
NPO15462 Angelica sinensis Species Apiaceae Eukaryota roots purchased from Kiu Shun Trading Ltd., Vancouver, Canada 2000 PMID[16643021]
NPO11438 Angelica gigas Species Apiaceae Eukaryota n.a. root n.a. PMID[17997069]
NPO26721 Apium graveolens Species Apiaceae Eukaryota n.a. n.a. n.a. PMID[18460139]
NPO26721 Apium graveolens Species Apiaceae Eukaryota n.a. n.a. n.a. PMID[19778086]
NPO30645 Poria cocos Species Coriolaceae Eukaryota n.a. sclerotium n.a. PMID[21250700]
NPO26721 Apium graveolens Species Apiaceae Eukaryota n.a. n.a. n.a. PMID[21800857]
NPO15462 Angelica sinensis Species Apiaceae Eukaryota n.a. n.a. n.a. PMID[25538068]
NPO29007 Brassica juncea Species Brassicaceae Eukaryota n.a. n.a. n.a. PMID[25700090]
NPO18951 Ligusticum sinense Species Apiaceae Eukaryota n.a. n.a. n.a. PMID[26521454]
NPO15462 Angelica sinensis Species Apiaceae Eukaryota n.a. n.a. n.a. PMID[27400088]
NPO8583 Angelica japonica Species Apiaceae Eukaryota n.a. root n.a. PMID[9987830]
NPO26721 Apium graveolens Species Apiaceae Eukaryota Seed Essent. Oil n.a. n.a. Database[FooDB]
NPO26721 Apium graveolens Species Apiaceae Eukaryota Shoot n.a. n.a. Database[FooDB]
NPO25369 Levisticum officinale Species Apiaceae Eukaryota n.a. n.a. Database[FooDB]
NPO29007 Brassica juncea Species Brassicaceae Eukaryota n.a. n.a. Database[FooDB]
NPO26721 Apium graveolens Species Apiaceae Eukaryota n.a. n.a. Database[FooDB]
NPO25369 Levisticum officinale Species Apiaceae Eukaryota Fruit n.a. n.a. Database[FooDB]
NPO26721 Apium graveolens Species Apiaceae Eukaryota Leaf n.a. n.a. Database[FooDB]
NPO26721 Apium graveolens Species Apiaceae Eukaryota n.a. n.a. Database[FooDB]
NPO26721 Apium graveolens Species Apiaceae Eukaryota Leaf Wax n.a. n.a. Database[FooDB]
NPO26721 Apium graveolens Species Apiaceae Eukaryota Roots n.a. Database[FooDB]
NPO29007 Brassica juncea Species Brassicaceae Eukaryota Plant n.a. n.a. Database[FooDB]
NPO25369 Levisticum officinale Species Apiaceae Eukaryota Plant n.a. n.a. Database[FooDB]
NPO26721 Apium graveolens Species Apiaceae Eukaryota Plant n.a. n.a. Database[FooDB]
NPO26721 Apium graveolens Species Apiaceae Eukaryota Pt n.a. n.a. Database[FooDB]
NPO25369 Levisticum officinale Species Apiaceae Eukaryota Root n.a. n.a. Database[FooDB]
NPO26721 Apium graveolens Species Apiaceae Eukaryota Root n.a. n.a. Database[FooDB]
NPO29007 Brassica juncea Species Brassicaceae Eukaryota Seed n.a. n.a. Database[FooDB]
NPO25369 Levisticum officinale Species Apiaceae Eukaryota Seed n.a. n.a. Database[FooDB]
NPO26721 Apium graveolens Species Apiaceae Eukaryota Seed n.a. n.a. Database[FooDB]
NPO15462 Angelica sinensis Species Apiaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO11474 Ligusticum jeholense Species Apiaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO26721 Apium graveolens Species Apiaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO31073 Ligusticum chuanxiong Species Apiaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO30645 Poria cocos Species Coriolaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO2921 Angelica acutiloba Species Apiaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO22033 Cnidium officinale Species Apiaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO9662 Conioselinum vaginatum Species Apiaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO29007 Brassica juncea Species Brassicaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO18951 Ligusticum sinense Species Apiaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO11438 Angelica gigas Species Apiaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO25369 Levisticum officinale Species Apiaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO8583 Angelica japonica Species Apiaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO25369 Levisticum officinale Species Apiaceae Eukaryota n.a. n.a. Database[Phenol-Explorer]
NPO26721 Apium graveolens Species Apiaceae Eukaryota n.a. n.a. Database[Phenol-Explorer]
NPO29007 Brassica juncea Species Brassicaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO26721.1 Apium graveolens var. dulce Varieties Apiaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO18951 Ligusticum sinense Species Apiaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO2921 Angelica acutiloba Species Apiaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO27024 Ligusticopsis brachyloba Species Apiaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO11438 Angelica gigas Species Apiaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO22033 Cnidium officinale Species Apiaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO15462 Angelica sinensis Species Apiaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO9662 Conioselinum vaginatum Species Apiaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO26721 Apium graveolens Species Apiaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO8583 Angelica japonica Species Apiaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO11474 Ligusticum jeholense Species Apiaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO25369 Levisticum officinale Species Apiaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO18951 Ligusticum sinense Species Apiaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO2921 Angelica acutiloba Species Apiaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO26721 Apium graveolens Species Apiaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO15462 Angelica sinensis Species Apiaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO9662 Conioselinum vaginatum Species Apiaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO11438 Angelica gigas Species Apiaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO29007 Brassica juncea Species Brassicaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO11474 Ligusticum jeholense Species Apiaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO31073 Ligusticum chuanxiong Species Apiaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO30645 Poria cocos Species Coriolaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO11474 Ligusticum jeholense Species Apiaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO15462 Angelica sinensis Species Apiaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO11438 Angelica gigas Species Apiaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO22033 Cnidium officinale Species Apiaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO29007 Brassica juncea Species Brassicaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO2154 Ligusticum tenuissimum Species Apiaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO2921 Angelica acutiloba Species Apiaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO18951 Ligusticum sinense Species Apiaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO18951 Ligusticum sinense Species Apiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO25369 Levisticum officinale Species Apiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO11474 Ligusticum jeholense Species Apiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO26721 Apium graveolens Species Apiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO29007 Brassica juncea Species Brassicaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO2921 Angelica acutiloba Species Apiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO11438 Angelica gigas Species Apiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO15462 Angelica sinensis Species Apiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO8583 Angelica japonica Species Apiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]

☑ Note for Reference:
In addition to directly collecting NP source organism data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated them from below databases:
UNPD: Universal Natural Products Database [PMID: 23638153].
StreptomeDB: a database of streptomycetes natural products [PMID: 33051671].
TM-MC: a database of medicinal materials and chemical compounds in Northeast Asian traditional medicine [PMID: 26156871].
TCM@Taiwan: a Traditional Chinese Medicine database [PMID: 21253603].
TCMID: a Traditional Chinese Medicine database [PMID: 29106634].
TCMSP: The traditional Chinese medicine systems pharmacology database and analysis platform [PMID: 24735618].
HerDing: a herb recommendation system to treat diseases using genes and chemicals [PMID: 26980517].
MetaboLights: a metabolomics database [PMID: 27010336].
FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].

  NP Quantity Composition/Concentration

Organism ID NP ID Organism Material Preparation Organism Part NP Quantity (Standard) NP Quantity (Minimum) NP Quantity (Maximum) Quantity Unit Reference
NPO25369 NPC83628 Other Root 84.4 15.3 153.5 mg/100g Database [DUKE]
NPO26721 NPC83628 Raw Seed 92 4 180 mg/100g Database [DUKE]

☑ Note for Reference:
In addition to directly collecting NP quantitative data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated NP quantitative records for specific NP domains (e.g., NPS from foods or herbs) from domain-specific databases. These databases include:
DUKE: Dr. Duke's Phytochemical and Ethnobotanical Databases.
PHENOL EXPLORER: is the first comprehensive database on polyphenol content in foods [PMID: 24103452], its homepage can be accessed at here.
FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].

  Biological Activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference
NPT681 Cell Line PC-12 Rattus norvegicus Activity = 73.05 % PMID[525289]
NPT681 Cell Line PC-12 Rattus norvegicus Activity = 68.05 % PMID[525289]
NPT681 Cell Line PC-12 Rattus norvegicus Activity = 16.2 U/ml PMID[525291]
NPT681 Cell Line PC-12 Rattus norvegicus Activity = 36.83 U/ml PMID[525291]
NPT681 Cell Line PC-12 Rattus norvegicus Activity = 36.74 U/L PMID[525291]
NPT681 Cell Line PC-12 Rattus norvegicus Activity = 140.79 U/L PMID[525291]
NPT261 Individual Protein Monoamine oxidase A Homo sapiens Inhibition = 11.2 % PMID[525294]
NPT582 Individual Protein Monoamine oxidase B Homo sapiens Inhibition = 18.2 % PMID[525294]
NPT2748 Individual Protein Butyrylcholinesterase Rattus norvegicus Inhibition = 2.67 % PMID[525297]
NPT261 Individual Protein Monoamine oxidase A Homo sapiens Inhibition = 11.2 % PMID[525297]
NPT582 Individual Protein Monoamine oxidase B Homo sapiens Inhibition = 18.2 % PMID[525297]
NPT66 Individual Protein Acetylcholinesterase Electrophorus electricus Inhibition < 5.0 % PMID[525297]
NPT66 Individual Protein Acetylcholinesterase Electrophorus electricus Inhibition < 5.0 % PMID[525299]
NPT204 Individual Protein Acetylcholinesterase Homo sapiens Inhibition < 5.0 % PMID[525299]
NPT2748 Individual Protein Butyrylcholinesterase Rattus norvegicus Inhibition < 5.0 % PMID[525299]
NPT261 Individual Protein Monoamine oxidase A Homo sapiens Inhibition = 11.2 % PMID[525299]
NPT582 Individual Protein Monoamine oxidase B Homo sapiens Inhibition = 18.2 % PMID[525299]
NPT614 Tissue Plasma Rattus norvegicus IE50 = 169.96 uM/L PMID[525286]
NPT614 Tissue Plasma Rattus norvegicus IE50 = 14.49 uM/L PMID[525286]
NPT177 Tissue Aorta Rattus norvegicus IC50 = 130060.0 nM PMID[525287]
NPT32 Organism Mus musculus Mus musculus LD50 = 750.89 mg.kg-1 PMID[525287]
NPT20529 NON-MOLECULAR NON-PROTEIN TARGET n.a. Inhibition = 67.8 % PMID[525288]
NPT29 Organism Rattus norvegicus Rattus norvegicus Activity = 25.73 % PMID[525289]
NPT29 Organism Rattus norvegicus Rattus norvegicus Activity = 33.61 % PMID[525289]
NPT29 Organism Rattus norvegicus Rattus norvegicus Activity = 40.83 % PMID[525289]
NPT29 Organism Rattus norvegicus Rattus norvegicus Activity = 40.04 % PMID[525289]
NPT29 Organism Rattus norvegicus Rattus norvegicus Activity = 31.47 % PMID[525289]
NPT29 Organism Rattus norvegicus Rattus norvegicus Activity = 26.9 % PMID[525289]
NPT29 Organism Rattus norvegicus Rattus norvegicus Activity = 23.58 % PMID[525289]
NPT20967 CELL-LINE Platelet n.a. Inhibition = 17.43 % PMID[525289]
NPT20967 CELL-LINE Platelet n.a. Inhibition = 9.5 % PMID[525289]
NPT20967 CELL-LINE Platelet n.a. IC50 = 480000.0 nM PMID[525289]
NPT20967 CELL-LINE Platelet n.a. IC50 > 1000000.0 nM PMID[525289]
NPT35 Others n.a. Solubility = 540000.0 nM PMID[525290]
NPT20529 NON-MOLECULAR NON-PROTEIN TARGET n.a. Inhibition = 15.72 % PMID[525290]
NPT20529 NON-MOLECULAR NON-PROTEIN TARGET n.a. Inhibition = 14.1 % PMID[525291]
NPT20529 NON-MOLECULAR NON-PROTEIN TARGET n.a. Inhibition = 28.06 % PMID[525291]
NPT20529 NON-MOLECULAR NON-PROTEIN TARGET n.a. Inhibition = 22.95 % PMID[525291]
NPT20529 NON-MOLECULAR NON-PROTEIN TARGET n.a. Inhibition = 42.45 % PMID[525291]
NPT20529 NON-MOLECULAR NON-PROTEIN TARGET n.a. Activity = 71.01 % PMID[525291]
NPT20529 NON-MOLECULAR NON-PROTEIN TARGET n.a. Activity = 76.6 % PMID[525291]
NPT20529 NON-MOLECULAR NON-PROTEIN TARGET n.a. Inhibition = 12.95 % PMID[525292]
NPT20529 NON-MOLECULAR NON-PROTEIN TARGET n.a. IC50 = 740000.0 nM PMID[525292]
NPT29 Organism Rattus norvegicus Rattus norvegicus Activity = 24.36 % PMID[525292]
NPT29 Organism Rattus norvegicus Rattus norvegicus Activity = 63.55 % PMID[525292]
NPT32 Organism Mus musculus Mus musculus Activity = 42.0 % PMID[525293]
NPT78 Individual Protein Beta amyloid A4 protein Homo sapiens Inhibition = 1.2 % PMID[525294]
NPT35 Others n.a. Activity = 0.21 uMequiv/uM PMID[525294]
NPT29 Organism Rattus norvegicus Rattus norvegicus Activity = 87.6 % PMID[525295]
NPT29 Organism Rattus norvegicus Rattus norvegicus Survival = 68.8 % PMID[525295]
NPT20555 ORGANISM SARS-CoV-2 Severe acute respiratory syndrome coronavirus 2 Hit score = 0.2447 n.a. PMID[525296]
NPT35 Others n.a. Activity = 0.21 uMequiv/uM PMID[525297]
NPT78 Individual Protein Beta amyloid A4 protein Homo sapiens Inhibition < 5.0 % PMID[525297]
NPT20555 ORGANISM SARS-CoV-2 Severe acute respiratory syndrome coronavirus 2 IC50 > 20000.0 nM PMID[525298]
NPT20555 ORGANISM SARS-CoV-2 Severe acute respiratory syndrome coronavirus 2 IC50 > 19952.62 nM PMID[525298]
NPT35 Others n.a. Activity = 0.2 equiv PMID[525299]
NPT78 Individual Protein Beta amyloid A4 protein Homo sapiens Inhibition < 5.0 % PMID[525299]
NPT2 Others Unspecified Inhibition < 5.0 % PMID[525299]
NPT78 Individual Protein Beta amyloid A4 protein Homo sapiens Activity < 5.0 % PMID[525299]
NPT614 Tissue Plasma Rattus norvegicus Inhibition = 9.5 % PMID[525299]

☑ Note for Activity Records:
☉ The quantitative biological activities were primarily integrated from ChEMBL (Version-30) database and were also directly collected from PubMed literature. PubMed PMID was provided as the reference link for each activity record.

  Chemically structural similarity: I. Similar Active Natural Products in NPASS

Top-200 similar NPs were calculated against the active-NP-set (includes 4,3285 NPs with experimentally-derived bioactivity available in NPASS)

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules. Tc lies between [0, 1] where '1' indicates the highest similarity. What is Tanimoto coefficient

●  The left chart: Distribution of similarity level between NPC83628 and all remaining natural products in the NPASS database.
●  The right table: Most similar natural products (Tc>=0.56 or Top200).

Similarity Score Similarity Level Natural Product ID
1.0 High Similarity NPC265407
0.9524 High Similarity NPC307651
0.95 High Similarity NPC89886
0.9412 High Similarity NPC37622
0.9412 High Similarity NPC30594
0.9223 High Similarity NPC119271
0.9208 High Similarity NPC45613
0.9167 High Similarity NPC149691
0.9135 High Similarity NPC56493
0.9057 High Similarity NPC474157
0.9057 High Similarity NPC210089
0.9048 High Similarity NPC10251
0.9048 High Similarity NPC17417
0.9029 High Similarity NPC31786
0.9 High Similarity NPC92754
0.9 High Similarity NPC276775
0.9 High Similarity NPC249912
0.8972 High Similarity NPC270699
0.8972 High Similarity NPC82899
0.8962 High Similarity NPC251854
0.8962 High Similarity NPC174099
0.8962 High Similarity NPC214067
0.8962 High Similarity NPC93084
0.8962 High Similarity NPC196246
0.8942 High Similarity NPC209632
0.8911 High Similarity NPC225060
0.8911 High Similarity NPC78701
0.8911 High Similarity NPC35448
0.8889 High Similarity NPC272524
0.8879 High Similarity NPC1082
0.8879 High Similarity NPC305912
0.8879 High Similarity NPC260818
0.8868 High Similarity NPC469636
0.8846 High Similarity NPC114594
0.8824 High Similarity NPC146351
0.8807 High Similarity NPC477411
0.8807 High Similarity NPC308744
0.88 High Similarity NPC130398
0.8796 High Similarity NPC321852
0.875 High Similarity NPC301943
0.875 High Similarity NPC60679
0.875 High Similarity NPC474365
0.8738 High Similarity NPC70624
0.8738 High Similarity NPC42211
0.8727 High Similarity NPC474685
0.8716 High Similarity NPC128368
0.8704 High Similarity NPC167504
0.8692 High Similarity NPC269023
0.8692 High Similarity NPC99846
0.8692 High Similarity NPC474364
0.8692 High Similarity NPC85493
0.8649 High Similarity NPC226093
0.8641 High Similarity NPC118343
0.8641 High Similarity NPC325497
0.8636 High Similarity NPC237366
0.8636 High Similarity NPC153053
0.8624 High Similarity NPC79496
0.8559 High Similarity NPC210092
0.8545 High Similarity NPC474176
0.8482 Intermediate Similarity NPC100353
0.8476 Intermediate Similarity NPC188895
0.8468 Intermediate Similarity NPC196075
0.8462 Intermediate Similarity NPC203925
0.8393 Intermediate Similarity NPC306740
0.839 Intermediate Similarity NPC246166
0.8381 Intermediate Similarity NPC473325
0.8378 Intermediate Similarity NPC161611
0.8365 Intermediate Similarity NPC229242
0.8364 Intermediate Similarity NPC476003
0.8362 Intermediate Similarity NPC50872
0.8304 Intermediate Similarity NPC474363
0.83 Intermediate Similarity NPC173443
0.8288 Intermediate Similarity NPC474314
0.8288 Intermediate Similarity NPC212415
0.8288 Intermediate Similarity NPC158282
0.8276 Intermediate Similarity NPC473243
0.8241 Intermediate Similarity NPC269457
0.8224 Intermediate Similarity NPC234305
0.822 Intermediate Similarity NPC223351
0.8214 Intermediate Similarity NPC13784
0.82 Intermediate Similarity NPC304760
0.8198 Intermediate Similarity NPC243355
0.8167 Intermediate Similarity NPC476599
0.8158 Intermediate Similarity NPC135730
0.81 Intermediate Similarity NPC89377
0.8095 Intermediate Similarity NPC270654
0.8091 Intermediate Similarity NPC470391
0.807 Intermediate Similarity NPC228936
0.807 Intermediate Similarity NPC470764
0.807 Intermediate Similarity NPC474095
0.8056 Intermediate Similarity NPC255676
0.8051 Intermediate Similarity NPC144547
0.8037 Intermediate Similarity NPC282895
0.8017 Intermediate Similarity NPC121272
0.8 Intermediate Similarity NPC228739
0.8 Intermediate Similarity NPC318107
0.7984 Intermediate Similarity NPC470278
0.7966 Intermediate Similarity NPC988
0.7966 Intermediate Similarity NPC289432
0.7963 Intermediate Similarity NPC304873
0.7963 Intermediate Similarity NPC284477
0.7963 Intermediate Similarity NPC25458
0.7951 Intermediate Similarity NPC51292
0.7951 Intermediate Similarity NPC169913
0.7944 Intermediate Similarity NPC217621
0.7944 Intermediate Similarity NPC472318
0.7944 Intermediate Similarity NPC98911
0.7941 Intermediate Similarity NPC220893
0.7934 Intermediate Similarity NPC295664
0.7931 Intermediate Similarity NPC190298
0.7928 Intermediate Similarity NPC211439
0.792 Intermediate Similarity NPC7012
0.7917 Intermediate Similarity NPC472703
0.7903 Intermediate Similarity NPC147561
0.79 Intermediate Similarity NPC58616
0.79 Intermediate Similarity NPC294134
0.7881 Intermediate Similarity NPC204784
0.7869 Intermediate Similarity NPC275576
0.7863 Intermediate Similarity NPC228318
0.7851 Intermediate Similarity NPC472704
0.7833 Intermediate Similarity NPC26285
0.7818 Intermediate Similarity NPC85977
0.7815 Intermediate Similarity NPC238861
0.7815 Intermediate Similarity NPC77000
0.7815 Intermediate Similarity NPC232958
0.781 Intermediate Similarity NPC261181
0.7805 Intermediate Similarity NPC472706
0.7805 Intermediate Similarity NPC473220
0.7805 Intermediate Similarity NPC470753
0.7788 Intermediate Similarity NPC119631
0.7769 Intermediate Similarity NPC475692
0.7769 Intermediate Similarity NPC46634
0.7769 Intermediate Similarity NPC474283
0.7768 Intermediate Similarity NPC249811
0.7768 Intermediate Similarity NPC277788
0.776 Intermediate Similarity NPC42234
0.776 Intermediate Similarity NPC82712
0.776 Intermediate Similarity NPC272946
0.776 Intermediate Similarity NPC475508
0.7759 Intermediate Similarity NPC81808
0.7757 Intermediate Similarity NPC253423
0.7748 Intermediate Similarity NPC105899
0.7742 Intermediate Similarity NPC472707
0.7727 Intermediate Similarity NPC160382
0.7724 Intermediate Similarity NPC470765
0.7714 Intermediate Similarity NPC77273
0.7712 Intermediate Similarity NPC217423
0.7712 Intermediate Similarity NPC469574
0.7712 Intermediate Similarity NPC45104
0.7705 Intermediate Similarity NPC475691
0.7705 Intermediate Similarity NPC471466
0.77 Intermediate Similarity NPC288903
0.7699 Intermediate Similarity NPC318327
0.7698 Intermediate Similarity NPC72915
0.7692 Intermediate Similarity NPC62765
0.7679 Intermediate Similarity NPC475203
0.7679 Intermediate Similarity NPC474376
0.7679 Intermediate Similarity NPC472316
0.7679 Intermediate Similarity NPC472315
0.7672 Intermediate Similarity NPC241851
0.7658 Intermediate Similarity NPC249067
0.7656 Intermediate Similarity NPC203486
0.7656 Intermediate Similarity NPC329913
0.7656 Intermediate Similarity NPC474608
0.7652 Intermediate Similarity NPC66208
0.7647 Intermediate Similarity NPC94637
0.7647 Intermediate Similarity NPC94298
0.7647 Intermediate Similarity NPC27633
0.7642 Intermediate Similarity NPC23453
0.7638 Intermediate Similarity NPC238370
0.7638 Intermediate Similarity NPC472394
0.7638 Intermediate Similarity NPC477360
0.7632 Intermediate Similarity NPC273837
0.7623 Intermediate Similarity NPC217756
0.7619 Intermediate Similarity NPC473247
0.7619 Intermediate Similarity NPC170546
0.7619 Intermediate Similarity NPC66246
0.7615 Intermediate Similarity NPC475373
0.7607 Intermediate Similarity NPC474408
0.7607 Intermediate Similarity NPC186933
0.7607 Intermediate Similarity NPC476357
0.7597 Intermediate Similarity NPC311339
0.7597 Intermediate Similarity NPC473399
0.7597 Intermediate Similarity NPC195647
0.7597 Intermediate Similarity NPC472577
0.7597 Intermediate Similarity NPC66761
0.7597 Intermediate Similarity NPC17877
0.7597 Intermediate Similarity NPC473216
0.7597 Intermediate Similarity NPC291638
0.7593 Intermediate Similarity NPC325499
0.7583 Intermediate Similarity NPC328459
0.7583 Intermediate Similarity NPC137710
0.7583 Intermediate Similarity NPC472708
0.7583 Intermediate Similarity NPC90522
0.7581 Intermediate Similarity NPC49938
0.7578 Intermediate Similarity NPC477364
0.7578 Intermediate Similarity NPC472656
0.7568 Intermediate Similarity NPC82426
0.7568 Intermediate Similarity NPC91820
0.7565 Intermediate Similarity NPC291799

  Chemically structural similarity: II. Similar Clinical/Approved Drugs

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules.

●  The left chart: Distribution of similarity level between NPC83628 and all drugs/candidates.
●  The right table: Most similar clinical/approved drugs (Tc>=0.56 or Top200).

Similarity Score Similarity Level Drug ID Developmental Stage
0.9804 High Similarity NPD2181 Clinical (unspecified phase)
0.9048 High Similarity NPD2182 Approved
0.9029 High Similarity NPD164 Approved
0.8641 High Similarity NPD1238 Approved
0.8288 Intermediate Similarity NPD1609 Clinical (unspecified phase)
0.8 Intermediate Similarity NPD9259 Approved
0.8 Intermediate Similarity NPD9257 Approved
0.7946 Intermediate Similarity NPD2067 Discontinued
0.7913 Intermediate Similarity NPD690 Clinical (unspecified phase)
0.7903 Intermediate Similarity NPD5952 Clinical (unspecified phase)
0.7815 Intermediate Similarity NPD3412 Clinical (unspecified phase)
0.781 Intermediate Similarity NPD1202 Approved
0.7692 Intermediate Similarity NPD9258 Approved
0.7692 Intermediate Similarity NPD9256 Approved
0.7686 Intermediate Similarity NPD518 Clinical (unspecified phase)
0.7658 Intermediate Similarity NPD1237 Approved
0.7647 Intermediate Similarity NPD9545 Approved
0.7619 Intermediate Similarity NPD7008 Discontinued
0.7559 Intermediate Similarity NPD3764 Approved
0.7544 Intermediate Similarity NPD6831 Clinical (unspecified phase)
0.7541 Intermediate Similarity NPD6287 Discontinued
0.7523 Intermediate Similarity NPD9495 Approved
0.75 Intermediate Similarity NPD1989 Approved
0.7479 Intermediate Similarity NPD9493 Approved
0.7458 Intermediate Similarity NPD5951 Approved
0.7411 Intermediate Similarity NPD1931 Clinical (unspecified phase)
0.7411 Intermediate Similarity NPD1930 Approved
0.7411 Intermediate Similarity NPD6647 Phase 2
0.7411 Intermediate Similarity NPD1929 Approved
0.7407 Intermediate Similarity NPD9260 Approved
0.7404 Intermediate Similarity NPD1087 Approved
0.7381 Intermediate Similarity NPD6007 Clinical (unspecified phase)
0.7373 Intermediate Similarity NPD1241 Discontinued
0.736 Intermediate Similarity NPD1876 Approved
0.736 Intermediate Similarity NPD2198 Approved
0.736 Intermediate Similarity NPD2199 Approved
0.7358 Intermediate Similarity NPD3672 Approved
0.7358 Intermediate Similarity NPD3673 Approved
0.7345 Intermediate Similarity NPD5909 Discontinued
0.73 Intermediate Similarity NPD9490 Approved
0.7297 Intermediate Similarity NPD2066 Phase 3
0.7273 Intermediate Similarity NPD2567 Approved
0.7273 Intermediate Similarity NPD2569 Approved
0.7258 Intermediate Similarity NPD1547 Clinical (unspecified phase)
0.7248 Intermediate Similarity NPD1693 Approved
0.7239 Intermediate Similarity NPD2343 Clinical (unspecified phase)
0.7238 Intermediate Similarity NPD1282 Approved
0.7196 Intermediate Similarity NPD1090 Approved
0.7196 Intermediate Similarity NPD1089 Approved
0.7196 Intermediate Similarity NPD1086 Approved
0.7184 Intermediate Similarity NPD9491 Approved
0.7177 Intermediate Similarity NPD7457 Clinical (unspecified phase)
0.7168 Intermediate Similarity NPD1932 Approved
0.7167 Intermediate Similarity NPD2629 Approved
0.7132 Intermediate Similarity NPD6832 Phase 2
0.712 Intermediate Similarity NPD1281 Approved
0.7109 Intermediate Similarity NPD1019 Discontinued
0.7105 Intermediate Similarity NPD9261 Approved
0.7103 Intermediate Similarity NPD800 Approved
0.7097 Intermediate Similarity NPD7163 Clinical (unspecified phase)
0.7091 Intermediate Similarity NPD688 Clinical (unspecified phase)
0.7087 Intermediate Similarity NPD5667 Approved
0.7075 Intermediate Similarity NPD650 Approved
0.7069 Intermediate Similarity NPD3134 Approved
0.7064 Intermediate Similarity NPD1088 Approved
0.7063 Intermediate Similarity NPD3972 Approved
0.7063 Intermediate Similarity NPD9717 Approved
0.7059 Intermediate Similarity NPD969 Suspended
0.7042 Intermediate Similarity NPD6591 Clinical (unspecified phase)
0.7031 Intermediate Similarity NPD9567 Approved
0.7031 Intermediate Similarity NPD552 Approved
0.7031 Intermediate Similarity NPD553 Approved
0.703 Intermediate Similarity NPD225 Approved
0.703 Intermediate Similarity NPD227 Approved
0.7016 Intermediate Similarity NPD5691 Approved
0.7009 Intermediate Similarity NPD1358 Approved
0.7 Intermediate Similarity NPD5122 Clinical (unspecified phase)
0.7 Intermediate Similarity NPD6858 Approved
0.7 Intermediate Similarity NPD7094 Approved
0.7 Intermediate Similarity NPD1563 Approved
0.6992 Remote Similarity NPD2347 Approved
0.6985 Remote Similarity NPD2346 Discontinued
0.6985 Remote Similarity NPD7702 Clinical (unspecified phase)
0.6978 Remote Similarity NPD7236 Approved
0.6977 Remote Similarity NPD6085 Phase 2
0.6977 Remote Similarity NPD5740 Clinical (unspecified phase)
0.6975 Remote Similarity NPD4141 Clinical (unspecified phase)
0.6972 Remote Similarity NPD1239 Approved
0.6972 Remote Similarity NPD7609 Phase 3
0.697 Remote Similarity NPD7713 Phase 3
0.696 Remote Similarity NPD17 Approved
0.6953 Remote Similarity NPD1283 Approved
0.695 Remote Similarity NPD6273 Approved
0.6949 Remote Similarity NPD2329 Discontinued
0.6947 Remote Similarity NPD6039 Approved
0.694 Remote Similarity NPD1654 Clinical (unspecified phase)
0.694 Remote Similarity NPD3528 Clinical (unspecified phase)
0.6929 Remote Similarity NPD6637 Approved
0.6917 Remote Similarity NPD3373 Approved
0.6909 Remote Similarity NPD7631 Approved
0.6909 Remote Similarity NPD1508 Approved
0.6903 Remote Similarity NPD5926 Approved
0.6897 Remote Similarity NPD3047 Approved
0.6897 Remote Similarity NPD3048 Approved
0.6897 Remote Similarity NPD3046 Approved
0.6894 Remote Similarity NPD2313 Discontinued
0.6891 Remote Similarity NPD5236 Approved
0.6891 Remote Similarity NPD5237 Approved
0.6891 Remote Similarity NPD5235 Approved
0.6891 Remote Similarity NPD4234 Approved
0.6891 Remote Similarity NPD5240 Approved
0.6891 Remote Similarity NPD5239 Approved
0.6891 Remote Similarity NPD4233 Approved
0.6885 Remote Similarity NPD1246 Approved
0.6875 Remote Similarity NPD182 Clinical (unspecified phase)
0.6864 Remote Similarity NPD9265 Clinical (unspecified phase)
0.6864 Remote Similarity NPD9267 Approved
0.6864 Remote Similarity NPD9263 Approved
0.6864 Remote Similarity NPD9264 Approved
0.6861 Remote Similarity NPD1471 Phase 3
0.686 Remote Similarity NPD5277 Phase 2
0.6855 Remote Similarity NPD6065 Approved
0.6846 Remote Similarity NPD2798 Approved
0.6838 Remote Similarity NPD3748 Approved
0.6838 Remote Similarity NPD2799 Discontinued
0.6835 Remote Similarity NPD4628 Phase 3
0.6833 Remote Similarity NPD2201 Approved
0.6829 Remote Similarity NPD4198 Discontinued
0.6827 Remote Similarity NPD942 Approved
0.6827 Remote Similarity NPD226 Approved
0.6825 Remote Similarity NPD5305 Approved
0.6825 Remote Similarity NPD5306 Approved
0.6814 Remote Similarity NPD1564 Approved
0.6814 Remote Similarity NPD1565 Approved
0.6814 Remote Similarity NPD1566 Phase 3
0.6807 Remote Similarity NPD74 Approved
0.6807 Remote Similarity NPD9266 Approved
0.6803 Remote Similarity NPD2650 Approved
0.6803 Remote Similarity NPD2652 Approved
0.68 Remote Similarity NPD1894 Discontinued
0.6797 Remote Similarity NPD1608 Approved
0.6797 Remote Similarity NPD1877 Discontinued
0.6794 Remote Similarity NPD3661 Approved
0.6794 Remote Similarity NPD3664 Approved
0.6794 Remote Similarity NPD3662 Phase 3
0.6794 Remote Similarity NPD3663 Approved
0.6794 Remote Similarity NPD5204 Approved
0.6791 Remote Similarity NPD2979 Phase 3
0.6791 Remote Similarity NPD4307 Phase 2
0.6777 Remote Similarity NPD9508 Approved
0.6774 Remote Similarity NPD694 Clinical (unspecified phase)
0.6774 Remote Similarity NPD405 Clinical (unspecified phase)
0.6772 Remote Similarity NPD4106 Approved
0.6772 Remote Similarity NPD4135 Approved
0.6772 Remote Similarity NPD4136 Approved
0.6769 Remote Similarity NPD2797 Approved
0.6769 Remote Similarity NPD3267 Approved
0.6769 Remote Similarity NPD3266 Approved
0.6769 Remote Similarity NPD1203 Approved
0.675 Remote Similarity NPD1756 Approved
0.675 Remote Similarity NPD1752 Approved
0.675 Remote Similarity NPD1317 Discontinued
0.6748 Remote Similarity NPD4766 Approved
0.6746 Remote Similarity NPD1651 Approved
0.6746 Remote Similarity NPD1245 Approved
0.6741 Remote Similarity NPD1899 Clinical (unspecified phase)
0.6741 Remote Similarity NPD230 Phase 1
0.6736 Remote Similarity NPD7239 Suspended
0.6726 Remote Similarity NPD1843 Approved
0.6719 Remote Similarity NPD4807 Approved
0.6719 Remote Similarity NPD4806 Approved
0.6714 Remote Similarity NPD7003 Approved
0.6696 Remote Similarity NPD7798 Approved
0.6695 Remote Similarity NPD9697 Approved
0.6693 Remote Similarity NPD4626 Approved
0.6667 Remote Similarity NPD7966 Clinical (unspecified phase)
0.6667 Remote Similarity NPD6010 Discontinued
0.6667 Remote Similarity NPD2438 Suspended
0.6667 Remote Similarity NPD3887 Approved
0.6667 Remote Similarity NPD4878 Approved
0.6667 Remote Similarity NPD3495 Discontinued
0.6667 Remote Similarity NPD5738 Clinical (unspecified phase)
0.6643 Remote Similarity NPD7421 Clinical (unspecified phase)
0.6643 Remote Similarity NPD2534 Approved
0.6643 Remote Similarity NPD2532 Approved
0.6643 Remote Similarity NPD2533 Approved
0.6641 Remote Similarity NPD2628 Approved
0.6641 Remote Similarity NPD2160 Approved
0.6641 Remote Similarity NPD2627 Approved
0.6641 Remote Similarity NPD2159 Approved
0.6641 Remote Similarity NPD2626 Approved
0.6641 Remote Similarity NPD2625 Approved
0.664 Remote Similarity NPD4576 Approved
0.664 Remote Similarity NPD4574 Approved
0.6639 Remote Similarity NPD6685 Approved
0.6638 Remote Similarity NPD2552 Approved
0.6638 Remote Similarity NPD2553 Approved
0.6638 Remote Similarity NPD2555 Approved
0.6638 Remote Similarity NPD2549 Approved
0.6638 Remote Similarity NPD2550 Approved

  Bioactivity similarity: Similar Natural Products in NPASS

Bioactivity similarity was calculated based on bioactivity descriptors of compounds. The bioactivity descriptors were calculated by a recently developed AI algorithm Chemical Checker (CC) [Nature Biotechnology, 38:1087–1096, 2020; Nature Communications, 12:3932, 2021], which evaluated bioactivity similarities at five levels:
A: chemistry similarity;
B: biological targets similarity;
C: networks similarity;
D: cell-based bioactivity similarity;
E: similarity based on clinical data.

Those 5 categories of CC bioactivity descriptors were calculated and then subjected to manifold projection using UMAP algorithm, to project all NPs on a 2-Dimensional space. The current NP was highlighted with a small circle in the 2-D map. Below figures: left-to-right, A-to-E.

A: chemistry similarity
B: biological targets similarity
C: networks similarity
D: cell-based bioactivity similarity
E: similarity based on clinical data