Natural Product: NPC77000

Natural Product IDNPC77000
Common Name
?
The InCHIKey will be temporarily assigned as the "Common Name" if no IUPAC name or alternative short name is available.
Cryptotanshinone
IUPAC Name (1R)-1,6,6-trimethyl-2,7,8,9-tetrahydro-1H-naphtho[1,2-g][1]benzofuran-10,11-dione
Synonyms Cryptotanshinone
Synthetic Gene Cluster n.a.
ChEMBL Identifier CHEMBL187460
PubChem CID 160254
Chemical Classification
  • CHEMONTID:0000000 [Organic compounds]
    • [CHEMONTID:0000012] Lipids and lipid-like molecules
      • [CHEMONTID:0000259] Prenol lipids
        • [CHEMONTID:0001551] Diterpenoids
          • [CHEMONTID:0002548] Tanshinones, isotanshinones, and derivatives

The Chemical Classification was calculated by Classyfire, a software for chemical taxonomy calculation. Reference: DOI:10.1186/s13321-016-0174-y.

  Chemical Representations

Standard InCHIKey GVKKJJOMQCNPGB-JTQLQIEISA-N
Standard InCHI InChI=1S/C19H20O3/c1-10-9-22-18-12-6-7-13-11(5-4-8-19(13,2)3)15(12)17(21)16(20)14(10)18/h6-7,10H,4-5,8-9H2,1-3H3/t10-/m0/s1
SMILES C[C@H]1COC2=C1C(=O)C(=O)c1c3CCCC(C)(C)c3ccc21

  Calculated Properties

Physi-Chem Properties

MedChem Properties

ADMET Properties (ADMETlab3.0)

ADMET: Absorption

ADMET: Distribution

ADMET: Metabolism

ADMET: Excretion

ADMET: Toxicity

  Species Source

Organism ID Organism Name Taxonomy Level Family SuperKingdom Isolation Part Collection Location Collection Time Reference
NPO5743 Salvia miltiorrhiza Species Lamiaceae Eukaryota n.a. n.a. n.a. PMID[ 17014425]
NPO5743 Salvia miltiorrhiza Species Lamiaceae Eukaryota n.a. n.a. n.a. DOI[10.1002/bab.1236]
NPO5743 Salvia miltiorrhiza Species Lamiaceae Eukaryota n.a. n.a. n.a. DOI[10.1016/j.indcrop.2010.09.006]
NPO22175 Perovskia abrotanoides Species Lamiaceae Eukaryota n.a. n.a. n.a. DOI[10.1016/j.indcrop.2015.01.015]
NPO5743 Salvia miltiorrhiza Species Lamiaceae Eukaryota n.a. root n.a. PMID[11374966]
NPO22175 Perovskia abrotanoides Species Lamiaceae Eukaryota n.a. n.a. n.a. PMID[11720520]
NPO25701 Amentotaxus yunnanensis Species Taxaceae Eukaryota n.a. n.a. n.a. PMID[12880325]
NPO25779 Vicia sativa Species Fabaceae Eukaryota n.a. n.a. n.a. PMID[1567426]
NPO5743 Salvia miltiorrhiza Species Lamiaceae Eukaryota n.a. n.a. n.a. PMID[16038550]
NPO25813 Salvia przewalskii Species Lamiaceae Eukaryota n.a. whole plant n.a. PMID[17217287]
NPO5743 Salvia miltiorrhiza Species Lamiaceae Eukaryota n.a. n.a. n.a. PMID[17583950]
NPO5743 Salvia miltiorrhiza Species Lamiaceae Eukaryota n.a. n.a. n.a. PMID[18855446]
NPO5743 Salvia miltiorrhiza Species Lamiaceae Eukaryota n.a. n.a. n.a. PMID[20455578]
NPO5743 Salvia miltiorrhiza Species Lamiaceae Eukaryota n.a. n.a. n.a. PMID[21775156]
NPO5743 Salvia miltiorrhiza Species Lamiaceae Eukaryota n.a. n.a. n.a. PMID[23286284]
NPO5743 Salvia miltiorrhiza Species Lamiaceae Eukaryota n.a. n.a. n.a. PMID[24108414]
NPO5743 Salvia miltiorrhiza Species Lamiaceae Eukaryota n.a. n.a. n.a. PMID[27569393]
NPO5743 Salvia miltiorrhiza Species Lamiaceae Eukaryota n.a. n.a. n.a. PMID[29185738]
NPO5743 Salvia miltiorrhiza Species Lamiaceae Eukaryota n.a. n.a. n.a. PMID[30351923]
NPO5743 Salvia miltiorrhiza Species Lamiaceae Eukaryota n.a. root n.a. PMID[3655791]
NPO25779 Vicia sativa Species Fabaceae Eukaryota n.a. n.a. n.a. PMID[37570961]
NPO22175 Perovskia abrotanoides Species Lamiaceae Eukaryota n.a. n.a. n.a. PMID[37770099]
NPO5743 Salvia miltiorrhiza Species Lamiaceae Eukaryota roots n.a. n.a. PMID[9834151]
NPO28257 Dioscorea communis Species Dioscoreaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO415 Deguelia hatschbachii Species Fabaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO25212 Ritterella rubra n.a. n.a. n.a. n.a. n.a. n.a. Database[COCONUT]
NPO25813 Salvia przewalskii Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO22016 Notholaena dealbata Species Pteridaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO25701 Amentotaxus yunnanensis Species Taxaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO5743 Salvia miltiorrhiza Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO4009 Allochromatium minutissimum Species Chromatiaceae Bacteria n.a. n.a. n.a. Database[COCONUT]
NPO23960 Artemisia siversiana Species Asteraceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO27437 Camptothecium lutescens Species Brachytheciaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO26223 Cladonia bellidiflora Species Cladoniaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO25868 Decachaeta ovatifolia n.a. n.a. n.a. n.a. n.a. n.a. Database[COCONUT]
NPO12476 Delphinium cyphoplectrum Species Ranunculaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO26087 Euphorbia retusa Species Euphorbiaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO10497 Hydrolithon reinboldii Species Corallinaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO26054 Palmaria palmata Species Palmariaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO6346 Phallusia fumigata Species Ascidiidae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO26316 Pleurophycus gardneri Species Alariaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO23417 Rhabdia lycioides n.a. n.a. n.a. n.a. n.a. n.a. Database[COCONUT]
NPO10155 Stauntonia obovatifoliola Species Lardizabalaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO25974 Streptomyces lateritius Species Streptomycetaceae Bacteria n.a. n.a. n.a. Database[COCONUT]
NPO24740 Uvaria klaineana Species Annonaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO24988 Viburnum sieboldi Species Adoxaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO25779 Vicia sativa Species Fabaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO11487 Senecio madagascariensis Species Asteraceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO22175 Perovskia abrotanoides Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO6321 Agathosma thymifolia Species Rutaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO12800 Glycine falcata Species Fabaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO22758 Picradeniopsis pringlei Species Asteraceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO5743 Salvia miltiorrhiza Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO25701 Amentotaxus yunnanensis Species Taxaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO25813 Salvia przewalskii Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO25779 Vicia sativa Species Fabaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO5743 Salvia miltiorrhiza Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO25813 Salvia przewalskii Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO25779 Vicia sativa Species Fabaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO28257 Dioscorea communis Species Dioscoreaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO25701 Amentotaxus yunnanensis Species Taxaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO24740 Uvaria klaineana Species Annonaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO5743 Salvia miltiorrhiza Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO25779 Vicia sativa Species Fabaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO5743 Salvia miltiorrhiza Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO26223 Cladonia bellidiflora Species Cladoniaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO23417 Rhabdia lycioides n.a. n.a. n.a. n.a. n.a. n.a. Database[UNPD]
NPO6346 Phallusia fumigata Species Ascidiidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO25974 Streptomyces lateritius Species Streptomycetaceae Bacteria n.a. n.a. n.a. Database[UNPD]
NPO415 Deguelia hatschbachii Species Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO24988 Viburnum sieboldi Species Adoxaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO28189 Metzgeria pubescens Species Metzgeriaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO4009 Allochromatium minutissimum Species Chromatiaceae Bacteria n.a. n.a. n.a. Database[UNPD]
NPO14253 Bothriocline longipes Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO22016 Notholaena dealbata Species Pteridaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO26054 Palmaria palmata Species Palmariaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO24740 Uvaria klaineana Species Annonaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO22175 Perovskia abrotanoides Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO25868 Decachaeta ovatifolia n.a. n.a. n.a. n.a. n.a. n.a. Database[UNPD]
NPO26087 Euphorbia retusa Species Euphorbiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO11003 Euphorbia sancta Species Euphorbiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO28257 Dioscorea communis Species Dioscoreaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO25701 Amentotaxus yunnanensis Species Taxaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO12476 Delphinium cyphoplectrum Species Ranunculaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO25813 Salvia przewalskii Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO6321 Agathosma thymifolia Species Rutaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO191 Amaranthus hybr Species Amaranthaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO10497 Hydrolithon reinboldii Species Corallinaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO12800 Glycine falcata Species Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO5743 Salvia miltiorrhiza Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO23960 Artemisia siversiana Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO11814 Asphodeline tenuior Species Asphodelaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO11985 Glycyrrhiza triphylla Species Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO11487 Senecio madagascariensis Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO27437 Camptothecium lutescens Species Brachytheciaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO25212 Ritterella rubra n.a. n.a. n.a. n.a. n.a. n.a. Database[UNPD]
NPO10155 Stauntonia obovatifoliola Species Lardizabalaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO26316 Pleurophycus gardneri Species Alariaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO25779 Vicia sativa Species Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO13164 Iris hoogiana Species Iridaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO22758 Picradeniopsis pringlei Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]

Note for Reference:
In addition to directly collecting NP source organism data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated them from below databases:
UNPD: Universal Natural Products Database [PMID: 23638153].
StreptomeDB: a database of streptomycetes natural products [PMID: 33051671].
TM-MC: a database of medicinal materials and chemical compounds in Northeast Asian traditional medicine [PMID: 26156871].
TCM@Taiwan: a Traditional Chinese Medicine database [PMID: 21253603].
TCMID: a Traditional Chinese Medicine database [PMID: 29106634].
TCMSP: The traditional Chinese medicine systems pharmacology database and analysis platform [PMID: 24735618].
HerDing: a herb recommendation system to treat diseases using genes and chemicals [PMID: 26980517].
MetaboLights: a metabolomics database [PMID: 27010336].
FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].



  NP Quantity Composition/Concentration

Organism ID Organism Name Organism Material Preparation Organism Part NP Quantity (Standard) NP Quantity (Minimum) NP Quantity (Maximum) Quantity Unit Reference

Note for Reference:
In addition to directly collecting NP quantitative data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated NP quantitative records for specific NP domains (e.g., NPS from foods or herbs) from domain-specific databases. These databases include:
DUKE: Dr. Duke's Phytochemical and Ethnobotanical Databases.
PHENOL EXPLORER: is the first comprehensive database on polyphenol content in foods [PMID: 24103452], its homepage can be accessed at here.
FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].



 Biological Activity

Molecular-level activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference
NPT1038 Individual protein Histone-lysine N-methyltransferase MLL Homo sapiens Potency = 31622.8 nM PubChem BioAssay data set
NPT3 Individual protein Thioredoxin glutathione reductase Schistosoma mansoni Potency = 3981.1 nM PubChem BioAssay data set
NPT1416 Individual protein Neuropeptide S receptor Homo sapiens Potency = 25118.9 nM PubChem BioAssay data set
NPT1254 Individual protein Streptokinase A Streptococcus pyogenes serotype M1 EC50 = 3953.0 nM PubChem BioAssay data set
NPT1254 Individual protein Streptokinase A Streptococcus pyogenes serotype M1 EC50 = 14816.0 nM PubChem BioAssay data set
NPT152 Individual protein Nuclear factor erythroid 2-related factor 2 Homo sapiens Potency n.a. 29092.9 nM PubChem BioAssay data set
NPT198 Individual protein Vitamin D receptor Homo sapiens Potency n.a. 11220.2 nM PubChem BioAssay data set
NPT198 Individual protein Vitamin D receptor Homo sapiens Potency n.a. 28183.8 nM PubChem BioAssay data set
NPT135 Individual protein Chromobox protein homolog 1 Homo sapiens Potency n.a. 28183.8 nM PubChem BioAssay data set
NPT199 Individual protein DNA polymerase kappa Homo sapiens Potency n.a. 79432.8 nM PubChem BioAssay data set
NPT199 Individual protein DNA polymerase kappa Homo sapiens Potency n.a. 23778.1 nM PubChem BioAssay data set
NPT154 Individual protein Mothers against decapentaplegic homolog 3 Homo sapiens Potency n.a. 4466.8 nM PubChem BioAssay data set
NPT198 Individual protein Vitamin D receptor Homo sapiens Potency n.a. 19952.6 nM PubChem BioAssay data set
NPT198 Individual protein Vitamin D receptor Homo sapiens Potency n.a. 23778.1 nM PubChem BioAssay data set
NPT198 Individual protein Vitamin D receptor Homo sapiens Potency n.a. 5804.8 nM PubChem BioAssay data set
NPT198 Individual protein Vitamin D receptor Homo sapiens Potency n.a. 31622.8 nM PubChem BioAssay data set
NPT198 Individual protein Vitamin D receptor Homo sapiens Potency n.a. 15848.9 nM PubChem BioAssay data set
NPT198 Individual protein Vitamin D receptor Homo sapiens Potency n.a. 25118.9 nM PubChem BioAssay data set
NPT10 Individual protein Geminin Homo sapiens Potency n.a. 18356.4 nM PubChem BioAssay data set
NPT10 Individual protein Geminin Homo sapiens Potency n.a. 4109.5 nM PubChem BioAssay data set
NPT101 Individual protein Glucagon-like peptide 1 receptor Homo sapiens Potency n.a. 28183.8 nM PubChem BioAssay data set
NPT200 Individual protein SARS coronavirus 3C-like proteinase SARS coronavirus IC50 = 226700.0 nM PMID[22884354]
NPT200 Individual protein SARS coronavirus 3C-like proteinase SARS coronavirus IC50 = 800.0 nM PMID[22884354]
NPT200 Individual protein SARS coronavirus 3C-like proteinase SARS coronavirus Ki = 9000.0 nM PMID[22884354]
NPT200 Individual protein SARS coronavirus 3C-like proteinase SARS coronavirus IC50 = 87600.0 nM PMID[22884354]
NPT201 Individual protein Papain Carica papaya IC50 = 89800.0 nM PMID[22884354]
NPT202 Individual protein Protease Human immunodeficiency virus 1 IC50 = 69600.0 nM PMID[22884354]
NPT200 Individual protein SARS coronavirus 3C-like proteinase SARS coronavirus IC50 = 10100.0 nM PMID[22884354]
NPT144 Individual protein Telomerase reverse transcriptase Homo sapiens Inhibition = 75.0 % PMID[22044621]
NPT203 Individual protein Carboxylesterase 2 Homo sapiens Inhibition = 81.0 % PMID[23286284]
NPT204 Individual protein Acetylcholinesterase Homo sapiens Ki > 100000.0 nM PMID[23286284]
NPT204 Individual protein Acetylcholinesterase Homo sapiens Ki = 6410.0 nM PMID[23286284]
NPT203 Individual protein Carboxylesterase 2 Homo sapiens Ki = 290.0 nM PMID[23286284]
NPT203 Individual protein Carboxylesterase 2 Homo sapiens Ki = 141.0 nM PMID[23286284]
NPT166 Individual protein Acyl coenzyme A:cholesterol acyltransferase Homo sapiens Ki = 544.0 nM PMID[23286284]
NPT206 Individual protein Protein-tyrosine phosphatase 2C Homo sapiens IC50 = 23900.0 nM PMID[23957426]
NPT206 Individual protein Protein-tyrosine phosphatase 2C Homo sapiens IC50 = 45180.0 nM PMID[23957426]
NPT206 Individual protein Protein-tyrosine phosphatase 2C Homo sapiens Kcat/Km = 2.15 /mM/s PMID[23957426]
NPT206 Individual protein Protein-tyrosine phosphatase 2C Homo sapiens Kcat = 0.36 /s PMID[23957426]
NPT1210 Individual protein T-cell protein-tyrosine phosphatase Homo sapiens IC50 = 55700.0 nM PMID[23957426]
NPT1870 Individual protein Receptor-type tyrosine-protein phosphatase F (LAR) Homo sapiens IC50 = 36900.0 nM PMID[23957426]
NPT287 Individual protein Leukocyte common antigen Homo sapiens IC50 = 41400.0 nM PMID[23957426]
NPT178 Individual protein Protein-tyrosine phosphatase 1B Homo sapiens IC50 = 33500.0 nM PMID[23957426]
NPT205 Individual protein Protein-tyrosine phosphatase 1C Homo sapiens IC50 = 39500.0 nM PMID[23957426]
NPT206 Individual protein Protein-tyrosine phosphatase 2C Homo sapiens IC50 = 22500.0 nM PMID[23957426]
NPT105 Individual protein Muscleblind-like protein 1 Homo sapiens Potency n.a. 44668.4 nM PubChem BioAssay data set
NPT1078 Individual protein Indoleamine 2,3-dioxygenase Homo sapiens IC50 = 10000.0 nM PMID[35358772]
NPT2961 Individual protein Tryptophan 2,3-dioxygenase Homo sapiens IC50 = 9800.0 nM PMID[35358772]
NPT206 Individual protein Protein-tyrosine phosphatase 2C Homo sapiens IC50 = 22500.0 nM PMID[35157464]
NPT50 Individual protein Tyrosyl-DNA phosphodiesterase 1 Homo sapiens Potency = 28183.8 nM PubChem BioAssay data set
NPT55 Individual protein Putative fructose-1,6-bisphosphate aldolase Giardia intestinalis Potency = 19905.4 nM PubChem BioAssay data set
NPT55 Individual protein Putative fructose-1,6-bisphosphate aldolase Giardia intestinalis Potency = 7062.7 nM PubChem BioAssay data set
NPT533 Protein-protein interaction Runt-related transcription factor 1/Core-binding factor subunit beta Homo sapiens Potency n.a. 25118.9 nM PubChem BioAssay data set
NPT533 Protein-protein interaction Runt-related transcription factor 1/Core-binding factor subunit beta Homo sapiens Potency n.a. 12589.3 nM PubChem BioAssay data set
NPT803 Individual protein Flap endonuclease 1 Homo sapiens Potency n.a. 14125.4 nM PubChem BioAssay data set
NPT9 Individual protein DNA polymerase eta Homo sapiens Potency n.a. 35481.3 nM PubChem BioAssay data set
NPT917 Individual protein Dengue virus type 2 NS3 protein Dengue virus type 2 (strain Thailand/16681/1984) (DENV-2) IC50 n.a. 90060.0 nM PubChem BioAssay data set
NPT3914 Individual protein Tyrosine-protein phosphatase non-receptor type 9 Homo sapiens IC50 = 59400.0 nM PMID[23957426]
NPT48 Individual protein Lysine-specific demethylase 4D-like Homo sapiens Potency = 17782.8 nM PubChem BioAssay data set
NPT94 Individual protein Aldehyde dehydrogenase 1A1 Homo sapiens Potency = 12589.3 nM PubChem BioAssay data set
NPT7 Individual protein Thioredoxin reductase 1, cytoplasmic Rattus norvegicus Potency n.a. 28183.8 nM PubChem BioAssay data set
NPT698 Individual protein Regulator of G-protein signaling 4 Homo sapiens Potency n.a. 56234.1 nM PubChem BioAssay data set
NPT484 Individual protein Luciferin 4-monooxygenase Photinus pyralis Potency n.a. 21331.3 nM PubChem BioAssay data set
NPT67 Individual protein Cholinesterase Equus caballus Inhibition = 12.06 % PMID[23062825]
NPT68 Individual protein Aldose reductase Rattus norvegicus IC50 = 4786.3 nM DOI[10.1007/s00044-011-9681-6]
NPT444 Individual protein Ubiquitin carboxyl-terminal hydrolase 1 Homo sapiens Potency n.a. 31622.8 nM PubChem BioAssay data set
NPT446 Individual protein Rap guanine nucleotide exchange factor 3 Homo sapiens Potency n.a. 100000.0 nM PubChem BioAssay data set
NPT831 Individual protein Serine/threonine-protein kinase PLK1 Homo sapiens Potency n.a. 26679.5 nM PubChem BioAssay data set
NPT446 Individual protein Rap guanine nucleotide exchange factor 3 Homo sapiens Potency n.a. 44668.4 nM PubChem BioAssay data set
NPT20556 Single protein Replicase polyprotein 1ab Severe acute respiratory syndrome coronavirus 2 Inhibition = 45.85 % DOI[10.6019/CHEMBL4495564]
NPT20556 Single protein Replicase polyprotein 1ab Severe acute respiratory syndrome coronavirus 2 Inhibition = -10.15 % DOI[10.6019/CHEMBL4495564]
NPT692 Individual protein Histone deacetylase 6 Homo sapiens Inhibition = 25.54 % HDAC6 screening dataset using tau-based substrate in an enzymatic assay yields selective inhibitors and activators
NPT20556 Single protein Replicase polyprotein 1ab Severe acute respiratory syndrome coronavirus 2 IC50 relative = 14.84 uM ECBD screening data for assay EOS300044
NPT20556 Single protein Replicase polyprotein 1ab Severe acute respiratory syndrome coronavirus 2 IC50 = 4200.0 nM PMID[33352046]
NPT20556 Single protein Replicase polyprotein 1ab Severe acute respiratory syndrome coronavirus 2 IC50 = 5630.0 nM PMID[35620927]
NPT21762 Single protein Lysine-specific histone demethylase 1 Homo sapiens IC50 = 9020.0 nM PMID[33581557]
NPT20556 Single protein Replicase polyprotein 1ab Severe acute respiratory syndrome coronavirus 2 IC50 = 1336.0 nM PMID[35620927]
NPT20556 Single protein Replicase polyprotein 1ab Severe acute respiratory syndrome coronavirus 2 IC50 relative > 20.0 uM ECBD screening data for assay EOS300041
NPT692 Individual protein Histone deacetylase 6 Homo sapiens Inhibition = -2.69 % HDAC6 screening dataset using tau-based substrate in an enzymatic assay yields selective inhibitors and activators
NPT46 Individual protein Thyroid hormone receptor beta-1 Homo sapiens Potency = 50118.7 nM PubChem BioAssay data set
NPT51 Individual protein Microtubule-associated protein tau Homo sapiens Potency = 12589.3 nM PubChem BioAssay data set
NPT51 Individual protein Microtubule-associated protein tau Homo sapiens Potency = 891.3 nM PubChem BioAssay data set
NPT59 Individual protein DNA polymerase beta Homo sapiens Potency = 22387.2 nM PubChem BioAssay data set
NPT63 Individual protein Bromodomain adjacent to zinc finger domain protein 2B Homo sapiens Potency n.a. 14125.4 nM PubChem BioAssay data set
NPT8 Individual protein DNA polymerase iota Homo sapiens Potency n.a. 22387.2 nM PubChem BioAssay data set
NPT861 Individual protein Isocitrate dehydrogenase [NADP] cytoplasmic Homo sapiens Potency n.a. 50118.7 nM PubChem BioAssay data set
NPT821 Individual protein Werner syndrome ATP-dependent helicase Homo sapiens Potency n.a. 56234.1 nM PubChem BioAssay data set
NPT66 Individual protein Acetylcholinesterase Electrophorus electricus Inhibition = 3.33 % PMID[23062825]
NPT861 Individual protein Isocitrate dehydrogenase [NADP] cytoplasmic Homo sapiens Potency n.a. 20596.2 nM PubChem BioAssay data set
NPT668 Individual protein P-glycoprotein 1 Homo sapiens Inhibition = 50.0 % PMID[20455578]
NPT47 Individual protein ATP-dependent DNA helicase Q1 Homo sapiens Potency = 39810.7 nM PubChem BioAssay data set
NPT442 Individual protein Ferritin light chain Equus caballus Potency = 50118.7 nM PubChem BioAssay data set
NPT197 Protein-protein interaction Menin/Histone-lysine N-methyltransferase MLL Homo sapiens Potency = 31622.8 nM PubChem BioAssay data set
NPT197 Protein-protein interaction Menin/Histone-lysine N-methyltransferase MLL Homo sapiens Potency = 14125.4 nM PubChem BioAssay data set
NPT864 Individual protein Lethal(3)malignant brain tumor-like protein 1 Homo sapiens Potency = 17782.8 nM PubChem BioAssay data set
NPT532 Individual protein Lysine-specific demethylase 4A Homo sapiens Potency n.a. 31622.8 nM PubChem BioAssay data set
NPT443 Individual protein Histone acetyltransferase GCN5 Homo sapiens Potency n.a. 39810.7 nM PubChem BioAssay data set
NPT64 Individual protein ATPase family AAA domain-containing protein 5 Homo sapiens Potency n.a. 16353.5 nM PubChem BioAssay data set
NPT38 Individual protein Signal transducer and activator of transcription 3 Homo sapiens IC50 = 4600.0 nM PMID[22650325]
NPT38 Individual protein Signal transducer and activator of transcription 3 Homo sapiens Inhibition = 25.0 % DOI[10.1039/C3MD00095H]
NPT38 Individual protein Signal transducer and activator of transcription 3 Homo sapiens Inhibition = 85.0 % DOI[10.1039/C4MD00177J]
NPT38 Individual protein Signal transducer and activator of transcription 3 Homo sapiens Inhibition = 78.0 % DOI[10.1039/C4MD00177J]

In vitro activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference
NPT83 Cell line MCF7 Homo sapiens ED50 = 0.41 ug ml-1 PMID[15509181]
NPT82 Cell line MDA-MB-231 Homo sapiens ED50 = 0.16 ug ml-1 PMID[15509181]
NPT196 Cell line AGS Homo sapiens IC50 = 13500.0 nM PMID[17583950]
NPT196 Cell line AGS Homo sapiens IC50 = 10200.0 nM PMID[17583950]
NPT927 Cell line PBMC Homo sapiens IC50 = 37400.0 nM PMID[11720520]
NPT377 Cell line OVCAR-3 Homo sapiens CD50 = 9.12 uM PMID[16038550]
NPT65 Cell line HepG2 Homo sapiens CD50 = 29.7 uM PMID[16038550]
NPT165 Cell line HeLa Homo sapiens CD50 = 17.2 uM PMID[16038550]
NPT783 Cell line MIA PaCa-2 Homo sapiens IC50 = 5800.0 nM PMID[21775156]
NPT65 Cell line HepG2 Homo sapiens Potency n.a. 10000.0 nM PubChem BioAssay data set
NPT367 Cell line MDA-N Homo sapiens GI50 n.a. 1610.65 nM PubChem BioAssay data set
NPT368 Cell line SN12C Homo sapiens GI50 n.a. 4365.16 nM PubChem BioAssay data set
NPT370 Cell line NCI-H23 Homo sapiens GI50 n.a. 1548.82 nM PubChem BioAssay data set
NPT369 Cell line ACHN Homo sapiens GI50 n.a. 3597.49 nM PubChem BioAssay data set
NPT371 Cell line UO-31 Homo sapiens GI50 n.a. 4698.94 nM PubChem BioAssay data set
NPT372 Cell line HOP-92 Homo sapiens GI50 n.a. 40831.94 nM PubChem BioAssay data set
NPT116 Cell line HL-60 Homo sapiens GI50 n.a. 2387.81 nM PubChem BioAssay data set
NPT90 Cell line DU-145 Homo sapiens GI50 n.a. 1352.07 nM PubChem BioAssay data set
NPT374 Cell line SF-539 Homo sapiens GI50 n.a. 3349.65 nM PubChem BioAssay data set
NPT375 Cell line Malme-3M Homo sapiens GI50 n.a. 305.49 nM PubChem BioAssay data set
NPT373 Cell line SK-MEL-5 Homo sapiens GI50 n.a. 381.94 nM PubChem BioAssay data set
NPT111 Cell line K562 Homo sapiens GI50 n.a. 3605.79 nM PubChem BioAssay data set
NPT376 Cell line A498 Homo sapiens GI50 n.a. 18323.14 nM PubChem BioAssay data set
NPT377 Cell line OVCAR-3 Homo sapiens GI50 n.a. 325.84 nM PubChem BioAssay data set
NPT112 Cell line MOLT-4 Homo sapiens GI50 n.a. 4236.43 nM PubChem BioAssay data set
NPT379 Cell line HOP-62 Homo sapiens GI50 n.a. 3681.29 nM PubChem BioAssay data set
NPT380 Cell line U-251 Homo sapiens GI50 n.a. 1995.26 nM PubChem BioAssay data set
NPT378 Cell line NCI/ADR-RES Homo sapiens GI50 n.a. 2786.12 nM PubChem BioAssay data set
NPT382 Cell line OVCAR-5 Homo sapiens GI50 n.a. 16069.41 nM PubChem BioAssay data set
NPT381 Cell line OVCAR-8 Homo sapiens GI50 n.a. 2576.32 nM PubChem BioAssay data set
NPT82 Cell line MDA-MB-231 Homo sapiens GI50 n.a. 11967.41 nM PubChem BioAssay data set
NPT383 Cell line SNB-19 Homo sapiens GI50 n.a. 2517.68 nM PubChem BioAssay data set
NPT384 Cell line TK-10 Homo sapiens GI50 n.a. 8184.65 nM PubChem BioAssay data set
NPT385 Cell line SR Homo sapiens GI50 n.a. 3419.79 nM PubChem BioAssay data set
NPT323 Cell line SW-620 Homo sapiens GI50 n.a. 1729.82 nM PubChem BioAssay data set
NPT455 Cell line NCI-H522 Homo sapiens GI50 n.a. 2009.09 nM PubChem BioAssay data set
NPT386 Cell line KM12 Homo sapiens GI50 n.a. 2192.8 nM PubChem BioAssay data set
NPT387 Cell line M14 Homo sapiens GI50 n.a. 1032.76 nM PubChem BioAssay data set
NPT388 Cell line NCI-H322M Homo sapiens GI50 n.a. 1644.37 nM PubChem BioAssay data set
NPT389 Cell line RPMI-8226 Homo sapiens GI50 n.a. 3311.31 nM PubChem BioAssay data set
NPT456 Cell line OVCAR-4 Homo sapiens GI50 n.a. 12189.9 nM PubChem BioAssay data set
NPT390 Cell line LOX IMVI Homo sapiens GI50 n.a. 2517.68 nM PubChem BioAssay data set
NPT457 Cell line BT-549 Homo sapiens GI50 n.a. 2108.63 nM PubChem BioAssay data set
NPT147 Cell line SK-MEL-2 Homo sapiens GI50 n.a. 4246.2 nM PubChem BioAssay data set
NPT81 Cell line A549 Homo sapiens GI50 n.a. 1049.54 nM PubChem BioAssay data set
NPT392 Cell line SNB-75 Homo sapiens GI50 n.a. 881.05 nM PubChem BioAssay data set
NPT391 Cell line HCC 2998 Homo sapiens GI50 n.a. 2483.13 nM PubChem BioAssay data set
NPT148 Cell line HCT-15 Homo sapiens GI50 n.a. 1940.89 nM PubChem BioAssay data set
NPT393 Cell line HCT-116 Homo sapiens GI50 n.a. 2964.83 nM PubChem BioAssay data set
NPT395 Cell line SF-268 Homo sapiens GI50 n.a. 1901.08 nM PubChem BioAssay data set
NPT83 Cell line MCF7 Homo sapiens GI50 n.a. 2218.2 nM PubChem BioAssay data set
NPT394 Cell line EKVX Homo sapiens GI50 n.a. 4623.81 nM PubChem BioAssay data set
NPT146 Cell line SK-OV-3 Homo sapiens GI50 n.a. 11614.49 nM PubChem BioAssay data set
NPT306 Cell line PC-3 Homo sapiens GI50 n.a. 4931.74 nM PubChem BioAssay data set
NPT396 Cell line T47D Homo sapiens GI50 n.a. 9462.37 nM PubChem BioAssay data set
NPT397 Cell line NCI-H460 Homo sapiens GI50 n.a. 1633.05 nM PubChem BioAssay data set
NPT398 Cell line UACC-62 Homo sapiens GI50 n.a. 2032.36 nM PubChem BioAssay data set
NPT400 Cell line MDA-MB-435 Homo sapiens GI50 n.a. 1415.79 nM PubChem BioAssay data set
NPT308 Cell line CAKI-1 Homo sapiens GI50 n.a. 8222.43 nM PubChem BioAssay data set
NPT399 Cell line SF-295 Homo sapiens GI50 n.a. 1678.8 nM PubChem BioAssay data set
NPT458 Cell line IGROV-1 Homo sapiens GI50 n.a. 2710.19 nM PubChem BioAssay data set
NPT402 Cell line Hs-578T Homo sapiens GI50 n.a. 2290.87 nM PubChem BioAssay data set
NPT403 Cell line UACC-257 Homo sapiens GI50 n.a. 1954.34 nM PubChem BioAssay data set
NPT401 Cell line 786-0 Homo sapiens GI50 n.a. 3419.79 nM PubChem BioAssay data set
NPT404 Cell line CCRF-CEM Homo sapiens GI50 n.a. 4305.27 nM PubChem BioAssay data set
NPT405 Cell line NCI-H226 Homo sapiens GI50 n.a. 3243.4 nM PubChem BioAssay data set
NPT139 Cell line HT-29 Homo sapiens GI50 n.a. 2182.73 nM PubChem BioAssay data set
NPT170 Cell line SK-MEL-28 Homo sapiens GI50 n.a. 3191.54 nM PubChem BioAssay data set
NPT406 Cell line RXF 393 Homo sapiens GI50 n.a. 6295.06 nM PubChem BioAssay data set
NPT407 Cell line COLO 205 Homo sapiens GI50 n.a. 1148.15 nM PubChem BioAssay data set
NPT933 Cell line U373 MG Homo sapiens FC = 4.5 n.a. PMID[23286284]
NPT1182 Cell line J774.A1 Mus musculus Inhibition n.a. n.a. % PMID[37040078]
NPT1182 Cell line J774.A1 Mus musculus Activity n.a. n.a. n.a. PMID[37040078]
NPT65 Cell line HepG2 Homo sapiens IC50 = 29200.0 nM PMID[35504209]
NPT65 Cell line HepG2 Homo sapiens IC50 relative = 3100.0 nM ECBD screening data for assay EOS300108
NPT189 Cell line Vero Chlorocebus aethiops CC50 n.a. 33380.0 nM PubChem BioAssay data set
NPT6 Organism Plasmodium falciparum Plasmodium falciparum IC50 = 12500.0 nM PMID[11720520]
NPT3912 Tissue Artery Sus scrofa ED50 = -7.2 ug ml-1 PMID[18855446]
NPT3912 Tissue Artery Sus scrofa Emax = 64.9 % PMID[18855446]
NPT174 Organism Streptococcus Streptococcus EC50 = 14089.0 nM PubChem BioAssay data set
NPT6 Organism Plasmodium falciparum Plasmodium falciparum Potency n.a. 18526.0 nM PubChem BioAssay data set
NPT6 Organism Plasmodium falciparum Plasmodium falciparum Potency n.a. 2936.2 nM PubChem BioAssay data set
NPT20555 Organism SARS-CoV-2 Severe acute respiratory syndrome coronavirus 2 Inhibition = 6.24 % DOI[10.21203/rs.3.rs-23951/v1]
NPT20555 Organism SARS-CoV-2 Severe acute respiratory syndrome coronavirus 2 Inhibition = -0.02 % DOI[10.6019/CHEMBL4495565]
NPT20555 Organism SARS-CoV-2 Severe acute respiratory syndrome coronavirus 2 Inhibition = 1.43 % DOI[10.6019/CHEMBL4495565]
NPT20555 Organism SARS-CoV-2 Severe acute respiratory syndrome coronavirus 2 EC50 > 200000.0 nM PMID[35620927]
NPT28438 Unchecked Unchecked n.a. IC50 = 6610.0 nM PMID[35504209]
NPT20555 Organism SARS-CoV-2 Severe acute respiratory syndrome coronavirus 2 EC50 = 700.0 nM PMID[35620927]
NPT28438 Unchecked Unchecked n.a. IC50 > 10000.0 nM PMID[35504209]
NPT20529 Non-molecular NON-PROTEIN TARGET n.a. IC50 > 30000.0 nM PMID[17583950]
NPT20529 Non-molecular NON-PROTEIN TARGET n.a. IC50 = 6900.0 nM PMID[11720520]
NPT20529 Non-molecular NON-PROTEIN TARGET n.a. IC50 = 7500.0 nM PMID[11720520]
NPT1252 Organism Streptococcus sp. 'group A' Streptococcus sp. 'group A' EC50 = 5172.0 nM PubChem BioAssay data set
NPT20529 Non-molecular NON-PROTEIN TARGET n.a. IC50 = 17220.0 nM PMID[23957426]
NPT22224 Cell line Vero C1008 Chlorocebus sabaeus CC50 > 300000.0 nM PMID[35620927]
NPT28855 Cell line ECa-109 cell line Homo sapiens IC50 = 5010.0 nM PMID[35504209]
NPT21802 Protein family Hypoxia inducible factors; HIF-1-alpha, HIF-2-alpha Homo sapiens IC50 = 1580.0 nM PMID[17583950]
NPT21802 Protein family Hypoxia inducible factors; HIF-1-alpha, HIF-2-alpha Homo sapiens IC50 = 1360.0 nM PMID[17583950]
NPT841 Organism Leishmania major Leishmania major IC50 = 18400.0 nM PMID[11720520]
NPT2 Others Unspecified n.a. Inhibition = 43.7 % PMID[21737268]
NPT2 Others Unspecified n.a. Potency n.a. 2818.4 nM PubChem BioAssay data set
NPT2 Others Unspecified n.a. IC50 = 119800.0 nM PMID[22884354]
NPT2 Others Unspecified n.a. Ratio IC50 = 2.01 n.a. PMID[23957426]
NPT2 Others Unspecified n.a. Ratio IC50 = 1.89 n.a. PMID[23957426]
NPT2 Others Unspecified n.a. Ratio IC50 = 2.48 n.a. PMID[23957426]
NPT2 Others Unspecified n.a. Ratio IC50 = 2.64 n.a. PMID[23957426]
NPT2 Others Unspecified n.a. Ratio IC50 = 1.64 n.a. PMID[23957426]
NPT2 Others Unspecified n.a. Ratio IC50 = 1.84 n.a. PMID[23957426]
NPT2 Others Unspecified n.a. Ratio IC50 = 1.49 n.a. PMID[23957426]
NPT2 Others Unspecified n.a. Ratio IC50 = 1.76 n.a. PMID[23957426]
NPT2 Others Unspecified n.a. Potency n.a. 11220.2 nM PubChem BioAssay data set
NPT2 Others Unspecified n.a. Potency n.a. 28183.8 nM PubChem BioAssay data set

In vivo activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference





 Experimental ADME

Experiment Model Experiment Tissue ADME Type ADME Relation ADME Value ADME Unit Reference





 Experimental Toxicity

Quantitative toxicity

Experiment Model Experiment Organism Toxicity Type Toxicity Relation Toxicity Value Toxicity Unit Reference

Common Abbreviations:
LC: Lethal Concentration; LD: Lethal Dose; LT:Lethal Time; NOAEL: No-observed-adverse-effect Level; BMDL: Benchmark Dose Lower Confidence Limit; BMD: Benchmark Dose; BMC:Benchmark Concentration; LOAEL: Lowest Observed Adverse Effect Level; RfD:Reference Dose; RfC:Reference Concentration; MRL: Minimal Risk Level; MEG: Maximum Exposure Guideline; PAC: Protective Action Criteria

Categorical toxicity labels

Hepatotoxicity Carcinogenicity Mutagenicity Cardiotoxicity Respiratory Toxicity Eye Irritation Endocrine Disruption
Hepatotoxicity Carcinogenicity Mutagenicity Cardiotoxicity Respiratory Toxicity Eye Irritation Endocrine Disruption

Note for Reference:
In addition to directly collecting NP quantitative data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated NP toxicity records from domain-specific databases. These databases include:
ToxValDB: a curated database that compiles quantitative toxicity values for chemicals from diverse public sources to support toxicological research and risk assessment.
TOXRIC: a comprehensive, free-to-access, online database providing toxicological/feature data. The toxicity labels are retrieved from this database. [PMID: 36400569]


  Chemically structural similarity

Similar Active Natural Products in NPASS

Top-200 similar NPs were calculated against the active-NP-set (includes approximately 50,000 NPs with experimentally-derived bioactivity available in NPASS)

Similarity is measured using the Tanimoto coefficient (Tc) , which compares the binary fingerprints of two molecules. Tc is calculated as the intersection divided by the union of '1' bits in the fingerprints, ranging from 0 to 1, with 1 indicating highest similarity.

●  The left chart: Distribution of similarity level between NPC77000 and all remaining natural products in the NPASS database.
●  The right table: Most similar natural products (Tc>=0.5 or Top200).

Similarity Score Similarity Level Natural Product ID
1.0 High Similarity NPC238861
0.7586 Intermediate Similarity NPC602717
0.6897 Remote Similarity NPC51079
0.6452 Remote Similarity NPC310662
0.625 Remote Similarity NPC212207
0.5333 Remote Similarity NPC239185

Similar Clinical/Approved Drugs

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules.

●  The left chart: Distribution of similarity level between NPC77000 and all drugs/candidates.
●  The right table: Most similar clinical/approved drugs (Tc>=0.5 or Top200).

Similarity Score Similarity Level Drug ID Developmental Stage
1.0 High Similarity NPD3412 Clinical (unspecified phase)
0.5333 Remote Similarity NPD3495 Discontinued

Bioactivity similarity

  Bioactivity similarity

Similar Natural Products in NPASS

Similarity level is defined by Bioactivity similarity was calculated based on bioactivity descriptors of compounds. The bioactivity descriptors were calculated by a recently developed AI algorithm Chemical Checker (CC) [Nature Biotechnology, 38:1087–1096, 2020; Nature Communications, 12:3932, 2021], which evaluated bioactivity similarities at five levels:
A: chemistry similarity;
B: biological targets similarity;
C: networks similarity;
D: cell-based bioactivity similarity;
E: similarity based on clinical data.
Those 5 categories of CC bioactivity descriptors were calculated and then subjected to manifold projection using UMAP algorithm, to project all NPs on a 2-Dimensional space. The current NP was highlighted with a small circle in the 2-D map. Below figures: left-to-right, A-to-E.

A: chemistry similarity
B: biological targets similarity
C: networks similarity
D: cell-based bioactivity similarity
E: similarity based on clinical data