Structure

Physi-Chem Properties

Molecular Weight:  1133.54
Volume:  1151.429
LogP:  7.2
LogD:  5.21
LogS:  -6.36
# Rotatable Bonds:  9
TPSA:  219.56
# H-Bond Aceptor:  18
# H-Bond Donor:  3
# Rings:  7
# Heavy Atoms:  20

MedChem Properties

QED Drug-Likeness Score:  0.243
Synthetic Accessibility Score:  7.687
Fsp3:  0.533
Lipinski Rule-of-5:  Rejected
Pfizer Rule:  Accepted
GSK Rule:  Rejected
BMS Rule:  0
Golden Triangle Rule:  Rejected
Chelating Alert:  0
PAINS Alert:  0

ADMET Properties (ADMETlab2.0)

ADMET: Absorption

Caco-2 Permeability:  -5.541
MDCK Permeability:  1.4845916666672565e-05
Pgp-inhibitor:  1.0
Pgp-substrate:  0.943
Human Intestinal Absorption (HIA):  0.822
20% Bioavailability (F20%):  0.965
30% Bioavailability (F30%):  0.97

ADMET: Distribution

Blood-Brain-Barrier Penetration (BBB):  0.001
Plasma Protein Binding (PPB):  97.86157989501953%
Volume Distribution (VD):  1.51
Pgp-substrate:  0.7734241485595703%

ADMET: Metabolism

CYP1A2-inhibitor:  0.002
CYP1A2-substrate:  0.013
CYP2C19-inhibitor:  0.278
CYP2C19-substrate:  0.394
CYP2C9-inhibitor:  0.823
CYP2C9-substrate:  0.023
CYP2D6-inhibitor:  0.037
CYP2D6-substrate:  0.1
CYP3A4-inhibitor:  0.984
CYP3A4-substrate:  0.922

ADMET: Excretion

Clearance (CL):  4.284
Half-life (T1/2):  0.038

ADMET: Toxicity

hERG Blockers:  0.052
Human Hepatotoxicity (H-HT):  0.998
Drug-inuced Liver Injury (DILI):  0.988
AMES Toxicity:  0.008
Rat Oral Acute Toxicity:  0.84
Maximum Recommended Daily Dose:  0.958
Skin Sensitization:  0.05
Carcinogencity:  0.003
Eye Corrosion:  0.003
Eye Irritation:  0.002
Respiratory Toxicity:  0.049

Download Data

Data Type Select
General Info & Identifiers & Properties  
Structure MOL file  
Source Organisms  
Biological Activities  
Similar NPs/Drugs  

  Natural Product: NPC326407

Natural Product ID:  NPC326407
Common Name*:   Grassypeptolides F
IUPAC Name:   n.a.
Synonyms:   Grassypeptolides F
Standard InCHIKey:  OMAHHNNQYKBGML-REKYTSBZSA-N
Standard InCHI:  InChI=1S/C60H79N9O9S2/c1-11-42-54-64-44(34-79-54)56(73)66(8)46(30-39-22-15-12-16-23-39)52(71)65-49(35(2)3)53(72)61-38(7)37(6)60(77)78-48(32-41-26-19-14-20-27-41)58(75)68(10)50(36(4)5)59(76)69-29-21-28-45(69)57(74)67(9)47(31-40-24-17-13-18-25-40)55-63-43(33-80-55)51(70)62-42/h12-20,22-27,35-38,42-50H,11,21,28-34H2,1-10H3,(H,61,72)(H,62,70)(H,65,71)/t37-,38-,42-,43+,44+,45+,46-,47-,48+,49-,50+/m1/s1
SMILES:  CC[C@H]1N=C(O)[C@@H]2CSC(=N2)[C@@H](Cc2ccccc2)N(C)C(=O)[C@@H]2CCCN2C(=O)[C@H](C(C)C)N(C)C(=O)[C@@H](OC(=O)[C@@H]([C@H](N=C([C@H](N=C([C@H](N(C(=O)[C@H]2N=C1SC2)C)Cc1ccccc1)O)C(C)C)O)C)C)Cc1ccccc1
Synthetic Gene Cluster:   n.a.
ChEMBL Identifier:   CHEMBL1823866
PubChem CID:   53493058
Chemical Classification**:  
  • CHEMONTID:0000000 [Organic compounds]
    • [CHEMONTID:0000264] Organic acids and derivatives
      • [CHEMONTID:0001813] Peptidomimetics
        • [CHEMONTID:0001961] Depsipeptides
          • [CHEMONTID:0001994] Cyclic depsipeptides

*Note: the InCHIKey will be temporarily assigned as the "Common Name" if no IUPAC name or alternative short name is available.
**Note: the Chemical Classification was calculated by NPClassifier Version 1.5. Reference: PMID:34662515.

  Species Source

Organism ID Organism Name Taxonomy Level Family SuperKingdom Isolation Part Collection Location Collection Time Reference
NPO26389 Lyngbya majuscula Species Oscillatoriaceae Bacteria n.a. n.a. n.a. PMID[10514329]
NPO26389 Lyngbya majuscula Species Oscillatoriaceae Bacteria n.a. n.a. n.a. PMID[10654420]
NPO26389 Lyngbya majuscula Species Oscillatoriaceae Bacteria n.a. n.a. n.a. PMID[10691708]
NPO26389 Lyngbya majuscula Species Oscillatoriaceae Bacteria n.a. palauan n.a. PMID[10691729]
NPO26389 Lyngbya majuscula Species Oscillatoriaceae Bacteria n.a. n.a. n.a. PMID[10843570]
NPO26389 Lyngbya majuscula Species Oscillatoriaceae Bacteria n.a. n.a. n.a. PMID[10924172]
NPO26389 Lyngbya majuscula Species Oscillatoriaceae Bacteria n.a. n.a. n.a. PMID[10978206]
NPO26389 Lyngbya majuscula Species Oscillatoriaceae Bacteria n.a. n.a. n.a. PMID[11076571]
NPO26389 Lyngbya majuscula Species Oscillatoriaceae Bacteria n.a. n.a. n.a. PMID[11076573]
NPO26389 Lyngbya majuscula Species Oscillatoriaceae Bacteria n.a. n.a. n.a. PMID[11076574]
NPO26389 Lyngbya majuscula Species Oscillatoriaceae Bacteria n.a. n.a. n.a. PMID[11277744]
NPO26389 Lyngbya majuscula Species Oscillatoriaceae Bacteria n.a. n.a. n.a. PMID[11389621]
NPO26389 Lyngbya majuscula Species Oscillatoriaceae Bacteria n.a. n.a. n.a. PMID[11430000]
NPO26389 Lyngbya majuscula Species Oscillatoriaceae Bacteria n.a. n.a. n.a. PMID[11473443]
NPO26389 Lyngbya majuscula Species Oscillatoriaceae Bacteria n.a. n.a. n.a. PMID[11922791]
NPO26389 Lyngbya majuscula Species Oscillatoriaceae Bacteria n.a. n.a. n.a. PMID[12762816]
NPO26389 Lyngbya majuscula Species Oscillatoriaceae Bacteria n.a. Papua New Guinea n.a. PMID[12828459]
NPO26389 Lyngbya majuscula Species Oscillatoriaceae Bacteria n.a. n.a. n.a. PMID[14575437]
NPO26389 Lyngbya majuscula Species Oscillatoriaceae Bacteria n.a. n.a. n.a. PMID[1517734]
NPO26389 Lyngbya majuscula Species Oscillatoriaceae Bacteria n.a. Papua New Guinea n.a. PMID[16643028]
NPO26389 Lyngbya majuscula Species Oscillatoriaceae Bacteria n.a. n.a. n.a. PMID[17125217]
NPO26389 Lyngbya majuscula Species Oscillatoriaceae Bacteria n.a. n.a. n.a. PMID[17441769]
NPO26389 Lyngbya majuscula Species Oscillatoriaceae Bacteria n.a. n.a. n.a. PMID[18444683]
NPO26389 Lyngbya majuscula Species Oscillatoriaceae Bacteria n.a. Singapore n.a. PMID[19093843]
NPO26389 Lyngbya majuscula Species Oscillatoriaceae Bacteria n.a. n.a. n.a. PMID[19489598]
NPO26389 Lyngbya majuscula Species Oscillatoriaceae Bacteria n.a. eastern Caribbean n.a. PMID[19739598]
NPO26389 Lyngbya majuscula Species Oscillatoriaceae Bacteria n.a. n.a. n.a. PMID[19839606]
NPO26389 Lyngbya majuscula Species Oscillatoriaceae Bacteria n.a. n.a. n.a. PMID[20030365]
NPO26389 Lyngbya majuscula Species Oscillatoriaceae Bacteria n.a. panamanian n.a. PMID[20158242]
NPO26389 Lyngbya majuscula Species Oscillatoriaceae Bacteria n.a. Floridian n.a. PMID[20166701]
NPO26389 Lyngbya majuscula Species Oscillatoriaceae Bacteria n.a. n.a. n.a. PMID[20936843]
NPO26389 Lyngbya majuscula Species Oscillatoriaceae Bacteria n.a. n.a. n.a. PMID[21138309]
NPO26389 Lyngbya majuscula Species Oscillatoriaceae Bacteria n.a. n.a. n.a. PMID[2128518]
NPO26389 Lyngbya majuscula Species Oscillatoriaceae Bacteria n.a. n.a. n.a. PMID[21341718]
NPO26389 Lyngbya majuscula Species Oscillatoriaceae Bacteria n.a. n.a. n.a. PMID[21539315]
NPO26389 Lyngbya majuscula Species Oscillatoriaceae Bacteria n.a. n.a. n.a. PMID[21806011]
NPO26389 Lyngbya majuscula Species Oscillatoriaceae Bacteria n.a. n.a. n.a. PMID[21999614]
NPO26389 Lyngbya majuscula Species Oscillatoriaceae Bacteria n.a. n.a. n.a. PMID[22035372]
NPO26389 Lyngbya majuscula Species Oscillatoriaceae Bacteria n.a. n.a. n.a. PMID[29792428]
NPO26389 Lyngbya majuscula Species Oscillatoriaceae Bacteria n.a. n.a. n.a. PMID[3924698]
NPO26389 Lyngbya majuscula Species Oscillatoriaceae Bacteria n.a. Caribbean n.a. PMID[7623050]
NPO26389 Lyngbya majuscula Species Oscillatoriaceae Bacteria n.a. Caribbean n.a. PMID[8699186]
NPO26389 Lyngbya majuscula Species Oscillatoriaceae Bacteria n.a. n.a. n.a. PMID[9584405]
NPO26389 Lyngbya majuscula Species Oscillatoriaceae Bacteria n.a. n.a. n.a. PMID[9599278]
NPO26389 Lyngbya majuscula Species Oscillatoriaceae Bacteria n.a. n.a. n.a. PMID[9599279]
NPO26389 Lyngbya majuscula Species Oscillatoriaceae Bacteria n.a. n.a. n.a. PMID[9784156]
NPO26389 Lyngbya majuscula Species Oscillatoriaceae Bacteria n.a. n.a. n.a. Database[UNPD]

☑ Note for Reference:
In addition to directly collecting NP source organism data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated them from below databases:
UNPD: Universal Natural Products Database [PMID: 23638153].
StreptomeDB: a database of streptomycetes natural products [PMID: 33051671].
TM-MC: a database of medicinal materials and chemical compounds in Northeast Asian traditional medicine [PMID: 26156871].
TCM@Taiwan: a Traditional Chinese Medicine database [PMID: 21253603].
TCMID: a Traditional Chinese Medicine database [PMID: 29106634].
TCMSP: The traditional Chinese medicine systems pharmacology database and analysis platform [PMID: 24735618].
HerDing: a herb recommendation system to treat diseases using genes and chemicals [PMID: 26980517].
MetaboLights: a metabolomics database [PMID: 27010336].
FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].

  NP Quantity Composition/Concentration

Organism ID NP ID Organism Material Preparation Organism Part NP Quantity (Standard) NP Quantity (Minimum) NP Quantity (Maximum) Quantity Unit Reference

☑ Note for Reference:
In addition to directly collecting NP quantitative data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated NP quantitative records for specific NP domains (e.g., NPS from foods or herbs) from domain-specific databases. These databases include:
DUKE: Dr. Duke's Phytochemical and Ethnobotanical Databases.
PHENOL EXPLORER: is the first comprehensive database on polyphenol content in foods [PMID: 24103452], its homepage can be accessed at here.
FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].

  Biological Activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference
NPT74 Individual Protein Proto-oncogene c-JUN Homo sapiens IC50 = 5200.0 nM PMID[478332]

☑ Note for Activity Records:
☉ The quantitative biological activities were primarily integrated from ChEMBL (Version-30) database and were also directly collected from PubMed literature. PubMed PMID was provided as the reference link for each activity record.

  Chemically structural similarity: I. Similar Active Natural Products in NPASS

Top-200 similar NPs were calculated against the active-NP-set (includes 4,3285 NPs with experimentally-derived bioactivity available in NPASS)

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules. Tc lies between [0, 1] where '1' indicates the highest similarity. What is Tanimoto coefficient

●  The left chart: Distribution of similarity level between NPC326407 and all remaining natural products in the NPASS database.
●  The right table: Most similar natural products (Tc>=0.56 or Top200).

Similarity Score Similarity Level Natural Product ID
1.0 High Similarity NPC317725
0.9623 High Similarity NPC318930
0.9623 High Similarity NPC317362
0.8718 High Similarity NPC105717
0.85 High Similarity NPC286551
0.8291 Intermediate Similarity NPC209509
0.8217 Intermediate Similarity NPC263493
0.8217 Intermediate Similarity NPC269398
0.7975 Intermediate Similarity NPC92784
0.7975 Intermediate Similarity NPC476133
0.7975 Intermediate Similarity NPC283783
0.7975 Intermediate Similarity NPC98424
0.7975 Intermediate Similarity NPC470884
0.7975 Intermediate Similarity NPC178662
0.7963 Intermediate Similarity NPC329761
0.7963 Intermediate Similarity NPC225648
0.7937 Intermediate Similarity NPC161069
0.7914 Intermediate Similarity NPC240848
0.7911 Intermediate Similarity NPC471264
0.7911 Intermediate Similarity NPC471265
0.7853 Intermediate Similarity NPC145113
0.784 Intermediate Similarity NPC5620
0.7826 Intermediate Similarity NPC139326
0.775 Intermediate Similarity NPC89489
0.7744 Intermediate Similarity NPC138775
0.773 Intermediate Similarity NPC322878
0.7692 Intermediate Similarity NPC473322
0.7688 Intermediate Similarity NPC127741
0.7683 Intermediate Similarity NPC262077
0.7669 Intermediate Similarity NPC476978
0.7665 Intermediate Similarity NPC162104
0.7651 Intermediate Similarity NPC129666
0.7647 Intermediate Similarity NPC197743
0.7647 Intermediate Similarity NPC297145
0.7628 Intermediate Similarity NPC239990
0.7628 Intermediate Similarity NPC152850
0.7628 Intermediate Similarity NPC71933
0.7628 Intermediate Similarity NPC105114
0.7628 Intermediate Similarity NPC89923
0.7619 Intermediate Similarity NPC122590
0.7596 Intermediate Similarity NPC4910
0.7595 Intermediate Similarity NPC255447
0.759 Intermediate Similarity NPC471820
0.759 Intermediate Similarity NPC471821
0.7564 Intermediate Similarity NPC136453
0.7532 Intermediate Similarity NPC300315
0.75 Intermediate Similarity NPC329731
0.7484 Intermediate Similarity NPC157311
0.7469 Intermediate Similarity NPC68865
0.7447 Intermediate Similarity NPC184933
0.7447 Intermediate Similarity NPC59827
0.744 Intermediate Similarity NPC2501
0.7438 Intermediate Similarity NPC44805
0.7438 Intermediate Similarity NPC8761
0.741 Intermediate Similarity NPC313867
0.741 Intermediate Similarity NPC316008
0.7394 Intermediate Similarity NPC197682
0.7378 Intermediate Similarity NPC163392
0.7378 Intermediate Similarity NPC307357
0.7378 Intermediate Similarity NPC268841
0.7378 Intermediate Similarity NPC239762
0.7378 Intermediate Similarity NPC46098
0.7374 Intermediate Similarity NPC137627
0.7365 Intermediate Similarity NPC314358
0.7349 Intermediate Similarity NPC315283
0.7349 Intermediate Similarity NPC52748
0.7349 Intermediate Similarity NPC314388
0.734 Intermediate Similarity NPC165538
0.7333 Intermediate Similarity NPC168113
0.733 Intermediate Similarity NPC477527
0.7289 Intermediate Similarity NPC468984
0.7289 Intermediate Similarity NPC176226
0.7287 Intermediate Similarity NPC477526
0.7251 Intermediate Similarity NPC233702
0.7239 Intermediate Similarity NPC248283
0.7238 Intermediate Similarity NPC26108
0.7234 Intermediate Similarity NPC329961
0.7234 Intermediate Similarity NPC122427
0.7202 Intermediate Similarity NPC471680
0.72 Intermediate Similarity NPC251036
0.7178 Intermediate Similarity NPC287401
0.7175 Intermediate Similarity NPC471052
0.7175 Intermediate Similarity NPC471053
0.7175 Intermediate Similarity NPC471051
0.7169 Intermediate Similarity NPC476259
0.716 Intermediate Similarity NPC130309
0.7159 Intermediate Similarity NPC471527
0.7143 Intermediate Similarity NPC159767
0.7143 Intermediate Similarity NPC477462
0.7143 Intermediate Similarity NPC155506
0.7127 Intermediate Similarity NPC230611
0.7126 Intermediate Similarity NPC469426
0.7126 Intermediate Similarity NPC469427
0.7118 Intermediate Similarity NPC135121
0.7101 Intermediate Similarity NPC477217
0.7101 Intermediate Similarity NPC201244
0.7101 Intermediate Similarity NPC315266
0.7099 Intermediate Similarity NPC200589
0.7088 Intermediate Similarity NPC306804
0.7081 Intermediate Similarity NPC319766
0.7072 Intermediate Similarity NPC475204
0.7072 Intermediate Similarity NPC40234
0.7072 Intermediate Similarity NPC475123
0.7063 Intermediate Similarity NPC47667
0.7056 Intermediate Similarity NPC141957
0.7051 Intermediate Similarity NPC470546
0.705 Intermediate Similarity NPC14877
0.705 Intermediate Similarity NPC145178
0.705 Intermediate Similarity NPC475350
0.7049 Intermediate Similarity NPC476227
0.7049 Intermediate Similarity NPC136797
0.7049 Intermediate Similarity NPC473402
0.7049 Intermediate Similarity NPC279871
0.7039 Intermediate Similarity NPC472923
0.7039 Intermediate Similarity NPC63931
0.7037 Intermediate Similarity NPC111428
0.7033 Intermediate Similarity NPC89831
0.7029 Intermediate Similarity NPC469903
0.7027 Intermediate Similarity NPC475421
0.7017 Intermediate Similarity NPC469904
0.7011 Intermediate Similarity NPC473341
0.7006 Intermediate Similarity NPC132636
0.7005 Intermediate Similarity NPC167763
0.7005 Intermediate Similarity NPC470903
0.7005 Intermediate Similarity NPC470112
0.6994 Remote Similarity NPC7817
0.6994 Remote Similarity NPC475168
0.6987 Remote Similarity NPC470545
0.6973 Remote Similarity NPC473001
0.6968 Remote Similarity NPC294951
0.6966 Remote Similarity NPC469902
0.6966 Remote Similarity NPC473003
0.6966 Remote Similarity NPC469901
0.6962 Remote Similarity NPC200964
0.6961 Remote Similarity NPC473502
0.6961 Remote Similarity NPC294516
0.6961 Remote Similarity NPC107938
0.6957 Remote Similarity NPC471165
0.6949 Remote Similarity NPC324850
0.6937 Remote Similarity NPC46427
0.6937 Remote Similarity NPC6975
0.6935 Remote Similarity NPC194671
0.6935 Remote Similarity NPC269750
0.6935 Remote Similarity NPC45037
0.6923 Remote Similarity NPC470544
0.6919 Remote Similarity NPC50016
0.6915 Remote Similarity NPC161143
0.6914 Remote Similarity NPC202198
0.6909 Remote Similarity NPC246079
0.6902 Remote Similarity NPC248670
0.6898 Remote Similarity NPC153554
0.6879 Remote Similarity NPC169328
0.6875 Remote Similarity NPC470902
0.6875 Remote Similarity NPC163961
0.6875 Remote Similarity NPC252878
0.6875 Remote Similarity NPC473305
0.6868 Remote Similarity NPC302597
0.6865 Remote Similarity NPC158277
0.6842 Remote Similarity NPC299806
0.6835 Remote Similarity NPC310467
0.6833 Remote Similarity NPC241794
0.6825 Remote Similarity NPC471526
0.6821 Remote Similarity NPC16188
0.6816 Remote Similarity NPC1390
0.6816 Remote Similarity NPC62104
0.6813 Remote Similarity NPC202521
0.6813 Remote Similarity NPC15068
0.6811 Remote Similarity NPC273755
0.6793 Remote Similarity NPC196091
0.6789 Remote Similarity NPC471048
0.6789 Remote Similarity NPC471049
0.6789 Remote Similarity NPC471050
0.6788 Remote Similarity NPC240130
0.6788 Remote Similarity NPC61332
0.6776 Remote Similarity NPC328649
0.6776 Remote Similarity NPC63040
0.6774 Remote Similarity NPC473354
0.6772 Remote Similarity NPC477637
0.6758 Remote Similarity NPC22883
0.6758 Remote Similarity NPC5719
0.6758 Remote Similarity NPC210377
0.6758 Remote Similarity NPC223207
0.6758 Remote Similarity NPC217804
0.675 Remote Similarity NPC476990
0.675 Remote Similarity NPC45777
0.675 Remote Similarity NPC477061
0.6749 Remote Similarity NPC478005
0.6748 Remote Similarity NPC101719
0.6748 Remote Similarity NPC4974
0.6743 Remote Similarity NPC13470
0.6739 Remote Similarity NPC473000
0.6738 Remote Similarity NPC469900
0.6735 Remote Similarity NPC477632
0.6735 Remote Similarity NPC477638
0.6728 Remote Similarity NPC474082
0.6728 Remote Similarity NPC175726
0.6723 Remote Similarity NPC261934
0.6723 Remote Similarity NPC5194
0.6723 Remote Similarity NPC262166
0.6722 Remote Similarity NPC469898

  Chemically structural similarity: II. Similar Clinical/Approved Drugs

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules.

●  The left chart: Distribution of similarity level between NPC326407 and all drugs/candidates.
●  The right table: Most similar clinical/approved drugs (Tc>=0.56 or Top200).

Similarity Score Similarity Level Drug ID Developmental Stage
0.7532 Intermediate Similarity NPD4125 Approved
0.7457 Intermediate Similarity NPD4557 Approved
0.744 Intermediate Similarity NPD3987 Approved
0.744 Intermediate Similarity NPD3988 Approved
0.741 Intermediate Similarity NPD5265 Approved
0.741 Intermediate Similarity NPD5264 Approved
0.7394 Intermediate Similarity NPD2022 Approved
0.7378 Intermediate Similarity NPD3480 Approved
0.7375 Intermediate Similarity NPD2047 Approved
0.7375 Intermediate Similarity NPD2050 Clinical (unspecified phase)
0.7375 Intermediate Similarity NPD2045 Approved
0.7375 Intermediate Similarity NPD21 Approved
0.7375 Intermediate Similarity NPD2046 Approved
0.7375 Intermediate Similarity NPD2048 Approved
0.7375 Intermediate Similarity NPD2043 Approved
0.7375 Intermediate Similarity NPD2044 Approved
0.7375 Intermediate Similarity NPD2049 Clinical (unspecified phase)
0.7375 Intermediate Similarity NPD2051 Approved
0.7368 Intermediate Similarity NPD4648 Approved
0.7368 Intermediate Similarity NPD4646 Approved
0.7368 Intermediate Similarity NPD4647 Approved
0.7349 Intermediate Similarity NPD2436 Approved
0.7349 Intermediate Similarity NPD2437 Approved
0.7346 Intermediate Similarity NPD5323 Approved
0.7337 Intermediate Similarity NPD7892 Clinical (unspecified phase)
0.7321 Intermediate Similarity NPD8323 Discontinued
0.7289 Intermediate Similarity NPD2088 Approved
0.7289 Intermediate Similarity NPD2087 Approved
0.7256 Intermediate Similarity NPD8173 Phase 2
0.7256 Intermediate Similarity NPD8172 Phase 2
0.7251 Intermediate Similarity NPD5229 Approved
0.7251 Intermediate Similarity NPD5230 Approved
0.7241 Intermediate Similarity NPD7749 Clinical (unspecified phase)
0.7235 Intermediate Similarity NPD5614 Approved
0.7235 Intermediate Similarity NPD5613 Approved
0.7233 Intermediate Similarity NPD2585 Clinical (unspecified phase)
0.7222 Intermediate Similarity NPD5299 Approved
0.7219 Intermediate Similarity NPD6552 Clinical (unspecified phase)
0.7195 Intermediate Similarity NPD7113 Clinical (unspecified phase)
0.7195 Intermediate Similarity NPD8643 Discontinued
0.7178 Intermediate Similarity NPD3561 Clinical (unspecified phase)
0.7168 Intermediate Similarity NPD8315 Phase 1
0.716 Intermediate Similarity NPD5298 Clinical (unspecified phase)
0.7134 Intermediate Similarity NPD8416 Discontinued
0.7111 Intermediate Similarity NPD6303 Approved
0.7111 Intermediate Similarity NPD6304 Approved
0.7108 Intermediate Similarity NPD4126 Approved
0.7062 Intermediate Similarity NPD4566 Approved
0.7062 Intermediate Similarity NPD4567 Approved
0.7056 Intermediate Similarity NPD4508 Discontinued
0.7052 Intermediate Similarity NPD7613 Discontinued
0.7044 Intermediate Similarity NPD2584 Suspended
0.7006 Intermediate Similarity NPD6852 Discontinued
0.7 Intermediate Similarity NPD5851 Approved
0.7 Intermediate Similarity NPD5852 Approved
0.6989 Remote Similarity NPD8417 Discontinued
0.6975 Remote Similarity NPD3608 Clinical (unspecified phase)
0.6964 Remote Similarity NPD6865 Phase 2
0.6964 Remote Similarity NPD6864 Phase 2
0.6954 Remote Similarity NPD5638 Approved
0.6946 Remote Similarity NPD6073 Approved
0.6941 Remote Similarity NPD6119 Clinical (unspecified phase)
0.6935 Remote Similarity NPD7695 Clinical (unspecified phase)
0.6901 Remote Similarity NPD6860 Clinical (unspecified phase)
0.6893 Remote Similarity NPD2891 Approved
0.6889 Remote Similarity NPD8351 Phase 2
0.6868 Remote Similarity NPD7133 Discontinued
0.6859 Remote Similarity NPD8103 Clinical (unspecified phase)
0.6852 Remote Similarity NPD5367 Discontinued
0.6845 Remote Similarity NPD5485 Approved
0.6845 Remote Similarity NPD5004 Approved
0.6845 Remote Similarity NPD5484 Approved
0.6845 Remote Similarity NPD5725 Approved
0.6829 Remote Similarity NPD4175 Approved
0.6829 Remote Similarity NPD7828 Discontinued
0.6829 Remote Similarity NPD4177 Approved
0.6826 Remote Similarity NPD8265 Approved
0.6811 Remote Similarity NPD7965 Phase 2
0.6811 Remote Similarity NPD7964 Clinical (unspecified phase)
0.6768 Remote Similarity NPD5339 Clinical (unspecified phase)
0.676 Remote Similarity NPD7118 Clinical (unspecified phase)
0.6743 Remote Similarity NPD2013 Approved
0.6743 Remote Similarity NPD2016 Approved
0.6743 Remote Similarity NPD2014 Approved
0.674 Remote Similarity NPD2097 Approved
0.674 Remote Similarity NPD7080 Clinical (unspecified phase)
0.6726 Remote Similarity NPD4153 Approved
0.6726 Remote Similarity NPD6623 Phase 3
0.672 Remote Similarity NPD8124 Phase 3
0.672 Remote Similarity NPD8126 Clinical (unspecified phase)
0.6703 Remote Similarity NPD4652 Approved
0.6686 Remote Similarity NPD8076 Discontinued
0.6684 Remote Similarity NPD6751 Clinical (unspecified phase)
0.6667 Remote Similarity NPD2098 Approved
0.6667 Remote Similarity NPD7634 Clinical (unspecified phase)
0.6667 Remote Similarity NPD5077 Approved
0.6667 Remote Similarity NPD5076 Approved
0.665 Remote Similarity NPD8339 Clinical (unspecified phase)
0.6646 Remote Similarity NPD6792 Phase 3
0.6629 Remote Similarity NPD2054 Approved
0.6629 Remote Similarity NPD2055 Phase 3
0.6608 Remote Similarity NPD6294 Approved
0.6608 Remote Similarity NPD6295 Approved
0.6597 Remote Similarity NPD2852 Approved
0.659 Remote Similarity NPD7720 Phase 2
0.6587 Remote Similarity NPD5263 Approved
0.6584 Remote Similarity NPD4209 Clinical (unspecified phase)
0.6584 Remote Similarity NPD4504 Clinical (unspecified phase)
0.6582 Remote Similarity NPD6505 Approved
0.6582 Remote Similarity NPD6504 Approved
0.6573 Remote Similarity NPD6390 Discontinued
0.657 Remote Similarity NPD7728 Clinical (unspecified phase)
0.6568 Remote Similarity NPD5747 Discontinued
0.6564 Remote Similarity NPD4706 Clinical (unspecified phase)
0.6554 Remote Similarity NPD6088 Approved
0.6552 Remote Similarity NPD6681 Discovery
0.6534 Remote Similarity NPD7602 Clinical (unspecified phase)
0.6524 Remote Similarity NPD3073 Approved
0.6524 Remote Similarity NPD3072 Approved
0.6524 Remote Similarity NPD3071 Approved
0.6517 Remote Similarity NPD4432 Discontinued
0.6512 Remote Similarity NPD6901 Phase 3
0.6497 Remote Similarity NPD3509 Approved
0.6497 Remote Similarity NPD3510 Approved
0.6497 Remote Similarity NPD8290 Clinical (unspecified phase)
0.649 Remote Similarity NPD3878 Approved
0.6488 Remote Similarity NPD4676 Approved
0.6488 Remote Similarity NPD7979 Clinical (unspecified phase)
0.6485 Remote Similarity NPD4677 Discontinued
0.648 Remote Similarity NPD7303 Discontinued
0.648 Remote Similarity NPD3335 Approved
0.6474 Remote Similarity NPD8022 Clinical (unspecified phase)
0.6474 Remote Similarity NPD3648 Clinical (unspecified phase)
0.6463 Remote Similarity NPD4480 Approved
0.6463 Remote Similarity NPD4761 Approved
0.6463 Remote Similarity NPD4762 Approved
0.6462 Remote Similarity NPD3334 Approved
0.6461 Remote Similarity NPD1582 Approved
0.6461 Remote Similarity NPD1581 Approved
0.6459 Remote Similarity NPD3879 Approved
0.6457 Remote Similarity NPD5341 Clinical (unspecified phase)
0.6453 Remote Similarity NPD4782 Clinical (unspecified phase)
0.6444 Remote Similarity NPD8352 Phase 1
0.6441 Remote Similarity NPD7740 Clinical (unspecified phase)
0.6437 Remote Similarity NPD7512 Approved
0.6437 Remote Similarity NPD7511 Approved
0.6429 Remote Similarity NPD3040 Approved
0.6429 Remote Similarity NPD5204 Approved
0.6429 Remote Similarity NPD7683 Discontinued
0.6413 Remote Similarity NPD7599 Phase 2
0.6412 Remote Similarity NPD4619 Approved
0.6412 Remote Similarity NPD4621 Approved
0.6402 Remote Similarity NPD5633 Discontinued
0.6396 Remote Similarity NPD2854 Approved
0.6396 Remote Similarity NPD2855 Approved
0.6396 Remote Similarity NPD2856 Approved
0.6393 Remote Similarity NPD7105 Phase 1
0.6393 Remote Similarity NPD2513 Approved
0.6392 Remote Similarity NPD8069 Phase 3
0.6391 Remote Similarity NPD2613 Approved
0.6384 Remote Similarity NPD6676 Phase 2
0.6378 Remote Similarity NPD7600 Phase 2
0.6374 Remote Similarity NPD3087 Approved
0.6374 Remote Similarity NPD3090 Approved
0.6374 Remote Similarity NPD3614 Approved
0.6374 Remote Similarity NPD2573 Approved
0.6374 Remote Similarity NPD3615 Approved
0.6374 Remote Similarity NPD3616 Approved
0.6374 Remote Similarity NPD2566 Approved
0.6374 Remote Similarity NPD2572 Clinical (unspecified phase)
0.6374 Remote Similarity NPD3089 Approved
0.6374 Remote Similarity NPD2570 Approved
0.6374 Remote Similarity NPD4746 Phase 3
0.6374 Remote Similarity NPD3088 Approved
0.6374 Remote Similarity NPD4745 Approved
0.6374 Remote Similarity NPD2574 Discontinued
0.6374 Remote Similarity NPD2571 Approved
0.6369 Remote Similarity NPD3588 Discontinued
0.6364 Remote Similarity NPD2609 Approved
0.6364 Remote Similarity NPD2612 Approved
0.6364 Remote Similarity NPD2608 Approved
0.6364 Remote Similarity NPD3131 Approved
0.6364 Remote Similarity NPD2610 Approved
0.6364 Remote Similarity NPD4216 Approved
0.6364 Remote Similarity NPD8303 Discontinued
0.6364 Remote Similarity NPD2611 Approved
0.6364 Remote Similarity NPD4217 Approved
0.6364 Remote Similarity NPD3132 Approved
0.6364 Remote Similarity NPD4218 Approved
0.6364 Remote Similarity NPD4215 Approved
0.6359 Remote Similarity NPD3007 Approved
0.6359 Remote Similarity NPD7011 Discontinued
0.6359 Remote Similarity NPD2515 Approved
0.6354 Remote Similarity NPD7131 Phase 3
0.6353 Remote Similarity NPD4794 Discontinued
0.6353 Remote Similarity NPD4738 Phase 2
0.6345 Remote Similarity NPD4434 Approved
0.6344 Remote Similarity NPD3493 Approved
0.6344 Remote Similarity NPD3492 Approved
0.6344 Remote Similarity NPD3494 Approved

  Bioactivity similarity: Similar Natural Products in NPASS

Bioactivity similarity was calculated based on bioactivity descriptors of compounds. The bioactivity descriptors were calculated by a recently developed AI algorithm Chemical Checker (CC) [Nature Biotechnology, 38:1087–1096, 2020; Nature Communications, 12:3932, 2021], which evaluated bioactivity similarities at five levels:
A: chemistry similarity;
B: biological targets similarity;
C: networks similarity;
D: cell-based bioactivity similarity;
E: similarity based on clinical data.

Those 5 categories of CC bioactivity descriptors were calculated and then subjected to manifold projection using UMAP algorithm, to project all NPs on a 2-Dimensional space. The current NP was highlighted with a small circle in the 2-D map. Below figures: left-to-right, A-to-E.

A: chemistry similarity
B: biological targets similarity
C: networks similarity
D: cell-based bioactivity similarity
E: similarity based on clinical data