Structure

Physi-Chem Properties

Molecular Weight:  878.52
Volume:  903.567
LogP:  4.394
LogD:  3.502
LogS:  -4.592
# Rotatable Bonds:  6
TPSA:  192.04
# H-Bond Aceptor:  16
# H-Bond Donor:  2
# Rings:  5
# Heavy Atoms:  16

MedChem Properties

QED Drug-Likeness Score:  0.402
Synthetic Accessibility Score:  5.921
Fsp3:  0.702
Lipinski Rule-of-5:  Rejected
Pfizer Rule:  Accepted
GSK Rule:  Rejected
BMS Rule:  0
Golden Triangle Rule:  Rejected
Chelating Alert:  0
PAINS Alert:  0

ADMET Properties (ADMETlab2.0)

ADMET: Absorption

Caco-2 Permeability:  -5.311
MDCK Permeability:  3.698487489600666e-05
Pgp-inhibitor:  0.998
Pgp-substrate:  0.435
Human Intestinal Absorption (HIA):  0.011
20% Bioavailability (F20%):  0.028
30% Bioavailability (F30%):  0.768

ADMET: Distribution

Blood-Brain-Barrier Penetration (BBB):  0.011
Plasma Protein Binding (PPB):  92.56806182861328%
Volume Distribution (VD):  0.661
Pgp-substrate:  1.2398598194122314%

ADMET: Metabolism

CYP1A2-inhibitor:  0.001
CYP1A2-substrate:  0.023
CYP2C19-inhibitor:  0.086
CYP2C19-substrate:  0.697
CYP2C9-inhibitor:  0.074
CYP2C9-substrate:  0.035
CYP2D6-inhibitor:  0.075
CYP2D6-substrate:  0.079
CYP3A4-inhibitor:  0.905
CYP3A4-substrate:  0.879

ADMET: Excretion

Clearance (CL):  5.905
Half-life (T1/2):  0.292

ADMET: Toxicity

hERG Blockers:  0.001
Human Hepatotoxicity (H-HT):  0.998
Drug-inuced Liver Injury (DILI):  0.98
AMES Toxicity:  0.006
Rat Oral Acute Toxicity:  0.143
Maximum Recommended Daily Dose:  0.036
Skin Sensitization:  0.038
Carcinogencity:  0.009
Eye Corrosion:  0.003
Eye Irritation:  0.003
Respiratory Toxicity:  0.018

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  Natural Product: NPC240848

Natural Product ID:  NPC240848
Common Name*:   JXOFEBNJOOEXJY-QNCIAAGJSA-N
IUPAC Name:   n.a.
Synonyms:  
Standard InCHIKey:  JXOFEBNJOOEXJY-QNCIAAGJSA-N
Standard InCHI:  InChI=1S/C47H70N6O10/c1-26(2)36-30(8)46(60)62-31(9)42(56)53-24-16-21-35(53)47(61)63-39(28(5)6)45(59)50(10)38(27(3)4)44(58)52-23-15-20-34(52)41(55)49-37(29(7)25-32-17-12-11-13-18-32)43(57)51-22-14-19-33(51)40(54)48-36/h11-13,17-18,26-31,33-39H,14-16,19-25H2,1-10H3,(H,48,54)(H,49,55)/t29-,30-,31+,33+,34+,35+,36-,37+,38-,39-/m1/s1
SMILES:  CC(C)[C@@H]1[C@@H](C)C(=O)O[C@@H](C)C(=O)N2CCC[C@H]2C(=O)O[C@H](C(C)C)C(=O)N(C)[C@H](C(C)C)C(=O)N2CCC[C@H]2C(=N[C@@H]([C@H](C)Cc2ccccc2)C(=O)N2CCC[C@H]2C(=N1)O)O
Synthetic Gene Cluster:   n.a.
ChEMBL Identifier:   CHEMBL3577211
PubChem CID:   70697890
Chemical Classification**:  
  • CHEMONTID:0000000 [Organic compounds]
    • [CHEMONTID:0000264] Organic acids and derivatives
      • [CHEMONTID:0001813] Peptidomimetics
        • [CHEMONTID:0001961] Depsipeptides
          • [CHEMONTID:0001994] Cyclic depsipeptides

*Note: the InCHIKey will be temporarily assigned as the "Common Name" if no IUPAC name or alternative short name is available.
**Note: the Chemical Classification was calculated by NPClassifier Version 1.5. Reference: PMID:34662515.

  Species Source

Organism ID Organism Name Taxonomy Level Family SuperKingdom Isolation Part Collection Location Collection Time Reference
NPO26389 Lyngbya majuscula Species Oscillatoriaceae Bacteria n.a. n.a. n.a. PMID[10514329]
NPO26389 Lyngbya majuscula Species Oscillatoriaceae Bacteria n.a. n.a. n.a. PMID[10654420]
NPO26389 Lyngbya majuscula Species Oscillatoriaceae Bacteria n.a. n.a. n.a. PMID[10691708]
NPO26389 Lyngbya majuscula Species Oscillatoriaceae Bacteria n.a. palauan n.a. PMID[10691729]
NPO26389 Lyngbya majuscula Species Oscillatoriaceae Bacteria n.a. n.a. n.a. PMID[10843570]
NPO26389 Lyngbya majuscula Species Oscillatoriaceae Bacteria n.a. n.a. n.a. PMID[10924172]
NPO26389 Lyngbya majuscula Species Oscillatoriaceae Bacteria n.a. n.a. n.a. PMID[10978206]
NPO26389 Lyngbya majuscula Species Oscillatoriaceae Bacteria n.a. n.a. n.a. PMID[11076571]
NPO26389 Lyngbya majuscula Species Oscillatoriaceae Bacteria n.a. n.a. n.a. PMID[11076573]
NPO26389 Lyngbya majuscula Species Oscillatoriaceae Bacteria n.a. n.a. n.a. PMID[11076574]
NPO26389 Lyngbya majuscula Species Oscillatoriaceae Bacteria n.a. n.a. n.a. PMID[11277744]
NPO26389 Lyngbya majuscula Species Oscillatoriaceae Bacteria n.a. n.a. n.a. PMID[11389621]
NPO26389 Lyngbya majuscula Species Oscillatoriaceae Bacteria n.a. n.a. n.a. PMID[11430000]
NPO26389 Lyngbya majuscula Species Oscillatoriaceae Bacteria n.a. n.a. n.a. PMID[11473443]
NPO26389 Lyngbya majuscula Species Oscillatoriaceae Bacteria n.a. n.a. n.a. PMID[11922791]
NPO16362 Symploca hydnoides Species Microcoleaceae Bacteria n.a. n.a. n.a. PMID[11975485]
NPO26389 Lyngbya majuscula Species Oscillatoriaceae Bacteria n.a. n.a. n.a. PMID[12762816]
NPO26389 Lyngbya majuscula Species Oscillatoriaceae Bacteria n.a. Papua New Guinea n.a. PMID[12828459]
NPO26389 Lyngbya majuscula Species Oscillatoriaceae Bacteria n.a. n.a. n.a. PMID[14575437]
NPO26389 Lyngbya majuscula Species Oscillatoriaceae Bacteria n.a. n.a. n.a. PMID[1517734]
NPO7301 Dolabella auricularia Species Aplysiidae Eukaryota n.a. n.a. n.a. PMID[15332837]
NPO26389 Lyngbya majuscula Species Oscillatoriaceae Bacteria n.a. Papua New Guinea n.a. PMID[16643028]
NPO26389 Lyngbya majuscula Species Oscillatoriaceae Bacteria n.a. n.a. n.a. PMID[17125217]
NPO26389 Lyngbya majuscula Species Oscillatoriaceae Bacteria n.a. n.a. n.a. PMID[17441769]
NPO7301 Dolabella auricularia Species Aplysiidae Eukaryota n.a. Papua New Guinea 1983 PMID[18327911]
NPO26389 Lyngbya majuscula Species Oscillatoriaceae Bacteria n.a. n.a. n.a. PMID[18444683]
NPO26389 Lyngbya majuscula Species Oscillatoriaceae Bacteria n.a. Singapore n.a. PMID[19093843]
NPO7301 Dolabella auricularia Species Aplysiidae Eukaryota n.a. n.a. n.a. PMID[19299148]
NPO26389 Lyngbya majuscula Species Oscillatoriaceae Bacteria n.a. n.a. n.a. PMID[19489598]
NPO26389 Lyngbya majuscula Species Oscillatoriaceae Bacteria n.a. eastern Caribbean n.a. PMID[19739598]
NPO26389 Lyngbya majuscula Species Oscillatoriaceae Bacteria n.a. n.a. n.a. PMID[19839606]
NPO26389 Lyngbya majuscula Species Oscillatoriaceae Bacteria n.a. n.a. n.a. PMID[20030365]
NPO26389 Lyngbya majuscula Species Oscillatoriaceae Bacteria n.a. panamanian n.a. PMID[20158242]
NPO26389 Lyngbya majuscula Species Oscillatoriaceae Bacteria n.a. Floridian n.a. PMID[20166701]
NPO26389 Lyngbya majuscula Species Oscillatoriaceae Bacteria n.a. n.a. n.a. PMID[20936843]
NPO26389 Lyngbya majuscula Species Oscillatoriaceae Bacteria n.a. n.a. n.a. PMID[21138309]
NPO26389 Lyngbya majuscula Species Oscillatoriaceae Bacteria n.a. n.a. n.a. PMID[2128518]
NPO26389 Lyngbya majuscula Species Oscillatoriaceae Bacteria n.a. n.a. n.a. PMID[21341718]
NPO16362 Symploca hydnoides Species Microcoleaceae Bacteria n.a. n.a. n.a. PMID[21446699]
NPO7301 Dolabella auricularia Species Aplysiidae Eukaryota n.a. n.a. n.a. PMID[21534541]
NPO7301 Dolabella auricularia Species Aplysiidae Eukaryota n.a. n.a. n.a. PMID[21539315]
NPO26389 Lyngbya majuscula Species Oscillatoriaceae Bacteria n.a. n.a. n.a. PMID[21539315]
NPO26389 Lyngbya majuscula Species Oscillatoriaceae Bacteria n.a. n.a. n.a. PMID[21806011]
NPO26389 Lyngbya majuscula Species Oscillatoriaceae Bacteria n.a. n.a. n.a. PMID[21999614]
NPO26389 Lyngbya majuscula Species Oscillatoriaceae Bacteria n.a. n.a. n.a. PMID[22035372]
NPO40759 Okeania sp. Species Oscillatoriaceae Bacteria n.a. n.a. n.a. PMID[26539973]
NPO40759 Okeania sp. Species Oscillatoriaceae Bacteria n.a. n.a. n.a. PMID[27359053]
NPO40759 Okeania sp. Species Oscillatoriaceae Bacteria n.a. n.a. n.a. PMID[28294609]
NPO40759 Okeania sp. Species Oscillatoriaceae Bacteria n.a. n.a. n.a. PMID[28541699]
NPO40759 Okeania sp. Species Oscillatoriaceae Bacteria n.a. n.a. n.a. PMID[29019684]
NPO40759 Okeania sp. Species Oscillatoriaceae Bacteria n.a. n.a. n.a. PMID[29667822]
NPO26389 Lyngbya majuscula Species Oscillatoriaceae Bacteria n.a. n.a. n.a. PMID[29792428]
NPO16362 Symploca hydnoides Species Microcoleaceae Bacteria n.a. n.a. n.a. PMID[31763840]
NPO40759 Okeania sp. Species Oscillatoriaceae Bacteria n.a. n.a. n.a. PMID[32040324]
NPO40759 Okeania sp. Species Oscillatoriaceae Bacteria n.a. n.a. n.a. PMID[32173199]
NPO40759 Okeania sp. Species Oscillatoriaceae Bacteria n.a. n.a. n.a. PMID[32267694]
NPO26389 Lyngbya majuscula Species Oscillatoriaceae Bacteria n.a. n.a. n.a. PMID[3924698]
NPO26389 Lyngbya majuscula Species Oscillatoriaceae Bacteria n.a. Caribbean n.a. PMID[7623050]
NPO26389 Lyngbya majuscula Species Oscillatoriaceae Bacteria n.a. Caribbean n.a. PMID[8699186]
NPO26389 Lyngbya majuscula Species Oscillatoriaceae Bacteria n.a. n.a. n.a. PMID[9584405]
NPO26389 Lyngbya majuscula Species Oscillatoriaceae Bacteria n.a. n.a. n.a. PMID[9599278]
NPO26389 Lyngbya majuscula Species Oscillatoriaceae Bacteria n.a. n.a. n.a. PMID[9599279]
NPO16362 Symploca hydnoides Species Microcoleaceae Bacteria n.a. n.a. n.a. PMID[9748368]
NPO26389 Lyngbya majuscula Species Oscillatoriaceae Bacteria n.a. n.a. n.a. PMID[9784156]
NPO16362 Symploca hydnoides Species Microcoleaceae Bacteria n.a. n.a. n.a. Database[UNPD]
NPO7301 Dolabella auricularia Species Aplysiidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO26389 Lyngbya majuscula Species Oscillatoriaceae Bacteria n.a. n.a. n.a. Database[UNPD]

☑ Note for Reference:
In addition to directly collecting NP source organism data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated them from below databases:
UNPD: Universal Natural Products Database [PMID: 23638153].
StreptomeDB: a database of streptomycetes natural products [PMID: 33051671].
TM-MC: a database of medicinal materials and chemical compounds in Northeast Asian traditional medicine [PMID: 26156871].
TCM@Taiwan: a Traditional Chinese Medicine database [PMID: 21253603].
TCMID: a Traditional Chinese Medicine database [PMID: 29106634].
TCMSP: The traditional Chinese medicine systems pharmacology database and analysis platform [PMID: 24735618].
HerDing: a herb recommendation system to treat diseases using genes and chemicals [PMID: 26980517].
MetaboLights: a metabolomics database [PMID: 27010336].
FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].

  NP Quantity Composition/Concentration

Organism ID NP ID Organism Material Preparation Organism Part NP Quantity (Standard) NP Quantity (Minimum) NP Quantity (Maximum) Quantity Unit Reference

☑ Note for Reference:
In addition to directly collecting NP quantitative data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated NP quantitative records for specific NP domains (e.g., NPS from foods or herbs) from domain-specific databases. These databases include:
DUKE: Dr. Duke's Phytochemical and Ethnobotanical Databases.
PHENOL EXPLORER: is the first comprehensive database on polyphenol content in foods [PMID: 24103452], its homepage can be accessed at here.
FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].

  Biological Activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference
NPT90 Cell Line DU-145 Homo sapiens GI50 > 10.0 ug.mL-1 PMID[493742]
NPT397 Cell Line NCI-H460 Homo sapiens GI50 > 10.0 ug.mL-1 PMID[493742]
NPT395 Cell Line SF-268 Homo sapiens GI50 > 10.0 ug.mL-1 PMID[493742]
NPT83 Cell Line MCF7 Homo sapiens GI50 > 10.0 ug.mL-1 PMID[493742]
NPT90 Cell Line DU-145 Homo sapiens GI50 = 0.009 ug.mL-1 PMID[493743]
NPT397 Cell Line NCI-H460 Homo sapiens GI50 = 0.27 ug.mL-1 PMID[493743]
NPT395 Cell Line SF-268 Homo sapiens GI50 = 0.016 ug.mL-1 PMID[493743]
NPT83 Cell Line MCF7 Homo sapiens GI50 = 0.027 ug.mL-1 PMID[493743]
NPT20529 NON-MOLECULAR NON-PROTEIN TARGET n.a. GI50 > 10.0 ug.mL-1 PMID[493742]
NPT20529 NON-MOLECULAR NON-PROTEIN TARGET n.a. GI50 = 0.013 ug.mL-1 PMID[493743]
NPT20529 NON-MOLECULAR NON-PROTEIN TARGET n.a. GI50 = 0.05 ug.mL-1 PMID[493743]
NPT2540 Organism Balanus amphitrite Balanus amphitrite EC50 = 90.0 nM PMID[493744]

☑ Note for Activity Records:
☉ The quantitative biological activities were primarily integrated from ChEMBL (Version-30) database and were also directly collected from PubMed literature. PubMed PMID was provided as the reference link for each activity record.

  Chemically structural similarity: I. Similar Active Natural Products in NPASS

Top-200 similar NPs were calculated against the active-NP-set (includes 4,3285 NPs with experimentally-derived bioactivity available in NPASS)

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules. Tc lies between [0, 1] where '1' indicates the highest similarity. What is Tanimoto coefficient

●  The left chart: Distribution of similarity level between NPC240848 and all remaining natural products in the NPASS database.
●  The right table: Most similar natural products (Tc>=0.56 or Top200).

Similarity Score Similarity Level Natural Product ID
0.927 High Similarity NPC470884
0.927 High Similarity NPC476133
0.927 High Similarity NPC178662
0.927 High Similarity NPC98424
0.927 High Similarity NPC92784
0.9137 High Similarity NPC263493
0.9137 High Similarity NPC269398
0.8944 High Similarity NPC5620
0.8944 High Similarity NPC209509
0.8921 High Similarity NPC471265
0.8921 High Similarity NPC471264
0.8873 High Similarity NPC476978
0.8759 High Similarity NPC471820
0.8759 High Similarity NPC471821
0.875 High Similarity NPC262077
0.8699 High Similarity NPC129666
0.869 High Similarity NPC329761
0.869 High Similarity NPC225648
0.8671 High Similarity NPC139326
0.8581 High Similarity NPC162104
0.8552 High Similarity NPC316008
0.8552 High Similarity NPC313867
0.8543 High Similarity NPC297145
0.8543 High Similarity NPC197743
0.8493 Intermediate Similarity NPC314358
0.8483 Intermediate Similarity NPC52748
0.8483 Intermediate Similarity NPC315283
0.8483 Intermediate Similarity NPC314388
0.8435 Intermediate Similarity NPC145113
0.8414 Intermediate Similarity NPC161069
0.8357 Intermediate Similarity NPC200589
0.8322 Intermediate Similarity NPC2501
0.8312 Intermediate Similarity NPC469901
0.8298 Intermediate Similarity NPC130309
0.8276 Intermediate Similarity NPC307357
0.8276 Intermediate Similarity NPC268841
0.8276 Intermediate Similarity NPC46098
0.8188 Intermediate Similarity NPC138775
0.8182 Intermediate Similarity NPC287401
0.8176 Intermediate Similarity NPC315266
0.8158 Intermediate Similarity NPC122590
0.8151 Intermediate Similarity NPC163392
0.8151 Intermediate Similarity NPC239762
0.8138 Intermediate Similarity NPC68865
0.8133 Intermediate Similarity NPC105717
0.8125 Intermediate Similarity NPC248283
0.8102 Intermediate Similarity NPC200964
0.7922 Intermediate Similarity NPC286551
0.7919 Intermediate Similarity NPC197682
0.7914 Intermediate Similarity NPC317725
0.7914 Intermediate Similarity NPC318930
0.7914 Intermediate Similarity NPC317362
0.7914 Intermediate Similarity NPC326407
0.7891 Intermediate Similarity NPC127741
0.7852 Intermediate Similarity NPC168113
0.7829 Intermediate Similarity NPC135121
0.7821 Intermediate Similarity NPC469903
0.7815 Intermediate Similarity NPC477217
0.7815 Intermediate Similarity NPC201244
0.7805 Intermediate Similarity NPC477462
0.7801 Intermediate Similarity NPC6975
0.7801 Intermediate Similarity NPC46427
0.78 Intermediate Similarity NPC176226
0.7785 Intermediate Similarity NPC469898
0.7778 Intermediate Similarity NPC473000
0.7758 Intermediate Similarity NPC469900
0.7736 Intermediate Similarity NPC469902
0.7733 Intermediate Similarity NPC469426
0.7733 Intermediate Similarity NPC469427
0.773 Intermediate Similarity NPC252878
0.7727 Intermediate Similarity NPC283783
0.7722 Intermediate Similarity NPC324850
0.7718 Intermediate Similarity NPC89489
0.7697 Intermediate Similarity NPC322878
0.7682 Intermediate Similarity NPC77905
0.7677 Intermediate Similarity NPC475168
0.7677 Intermediate Similarity NPC7817
0.7676 Intermediate Similarity NPC474082
0.7676 Intermediate Similarity NPC175726
0.7671 Intermediate Similarity NPC255447
0.7667 Intermediate Similarity NPC476259
0.766 Intermediate Similarity NPC202521
0.7655 Intermediate Similarity NPC473322
0.7643 Intermediate Similarity NPC473002
0.7635 Intermediate Similarity NPC141050
0.7593 Intermediate Similarity NPC472923
0.7589 Intermediate Similarity NPC476990
0.7586 Intermediate Similarity NPC319766
0.7586 Intermediate Similarity NPC89923
0.7586 Intermediate Similarity NPC105114
0.7586 Intermediate Similarity NPC152850
0.7586 Intermediate Similarity NPC239990
0.7586 Intermediate Similarity NPC71933
0.758 Intermediate Similarity NPC5194
0.758 Intermediate Similarity NPC473341
0.758 Intermediate Similarity NPC261934
0.7571 Intermediate Similarity NPC310467
0.7532 Intermediate Similarity NPC470902
0.7529 Intermediate Similarity NPC470903
0.7529 Intermediate Similarity NPC167763
0.7529 Intermediate Similarity NPC470112
0.7517 Intermediate Similarity NPC136453
0.75 Intermediate Similarity NPC169328
0.75 Intermediate Similarity NPC246079
0.7485 Intermediate Similarity NPC26108
0.7468 Intermediate Similarity NPC262166
0.7455 Intermediate Similarity NPC469904
0.7448 Intermediate Similarity NPC101719
0.7432 Intermediate Similarity NPC157311
0.7429 Intermediate Similarity NPC315276
0.7429 Intermediate Similarity NPC14672
0.7429 Intermediate Similarity NPC239357
0.7429 Intermediate Similarity NPC285926
0.7425 Intermediate Similarity NPC137627
0.7423 Intermediate Similarity NPC471052
0.7423 Intermediate Similarity NPC471053
0.7423 Intermediate Similarity NPC471051
0.741 Intermediate Similarity NPC475123
0.741 Intermediate Similarity NPC475204
0.7407 Intermediate Similarity NPC473003
0.7396 Intermediate Similarity NPC473001
0.7394 Intermediate Similarity NPC302597
0.7394 Intermediate Similarity NPC473502
0.7383 Intermediate Similarity NPC8761
0.7383 Intermediate Similarity NPC44805
0.7379 Intermediate Similarity NPC222466
0.7365 Intermediate Similarity NPC300315
0.7362 Intermediate Similarity NPC241794
0.7353 Intermediate Similarity NPC475421
0.7346 Intermediate Similarity NPC1390
0.7346 Intermediate Similarity NPC62104
0.7324 Intermediate Similarity NPC470546
0.731 Intermediate Similarity NPC472999
0.7301 Intermediate Similarity NPC471527
0.7289 Intermediate Similarity NPC141957
0.7278 Intermediate Similarity NPC476227
0.7278 Intermediate Similarity NPC136797
0.7255 Intermediate Similarity NPC132636
0.7254 Intermediate Similarity NPC470545
0.725 Intermediate Similarity NPC202198
0.7203 Intermediate Similarity NPC237420
0.7202 Intermediate Similarity NPC40234
0.7188 Intermediate Similarity NPC300443
0.7183 Intermediate Similarity NPC470544
0.7181 Intermediate Similarity NPC111428
0.7169 Intermediate Similarity NPC210377
0.7169 Intermediate Similarity NPC22883
0.7169 Intermediate Similarity NPC217804
0.7169 Intermediate Similarity NPC5719
0.7169 Intermediate Similarity NPC63931
0.7143 Intermediate Similarity NPC299806
0.7143 Intermediate Similarity NPC56685
0.7126 Intermediate Similarity NPC15068
0.7118 Intermediate Similarity NPC306804
0.7103 Intermediate Similarity NPC478016
0.7103 Intermediate Similarity NPC478014
0.7103 Intermediate Similarity NPC478015
0.7103 Intermediate Similarity NPC190663
0.7101 Intermediate Similarity NPC196091
0.7095 Intermediate Similarity NPC47667
0.7083 Intermediate Similarity NPC294516
0.7083 Intermediate Similarity NPC63040
0.7083 Intermediate Similarity NPC107938
0.7078 Intermediate Similarity NPC43755
0.7076 Intermediate Similarity NPC279871
0.7076 Intermediate Similarity NPC159767
0.7076 Intermediate Similarity NPC471165
0.7076 Intermediate Similarity NPC155506
0.7062 Intermediate Similarity NPC4910
0.7059 Intermediate Similarity NPC89831
0.7044 Intermediate Similarity NPC16188
0.7042 Intermediate Similarity NPC33742
0.703 Intermediate Similarity NPC24617
0.7021 Intermediate Similarity NPC273814
0.7007 Intermediate Similarity NPC160493
0.7 Intermediate Similarity NPC46009
0.6988 Remote Similarity NPC114806
0.6986 Remote Similarity NPC477061
0.6986 Remote Similarity NPC45777
0.6981 Remote Similarity NPC81026
0.6975 Remote Similarity NPC233702
0.6972 Remote Similarity NPC35850
0.6972 Remote Similarity NPC276949
0.6966 Remote Similarity NPC329731
0.6959 Remote Similarity NPC230611
0.6959 Remote Similarity NPC328494
0.6954 Remote Similarity NPC194671
0.6954 Remote Similarity NPC269750
0.6939 Remote Similarity NPC71684
0.6937 Remote Similarity NPC311658
0.6936 Remote Similarity NPC50016
0.6923 Remote Similarity NPC59827
0.6923 Remote Similarity NPC184933
0.6919 Remote Similarity NPC273755
0.6918 Remote Similarity NPC266741
0.6914 Remote Similarity NPC473491
0.6913 Remote Similarity NPC22746
0.6906 Remote Similarity NPC165538
0.6906 Remote Similarity NPC171734
0.689 Remote Similarity NPC39431

  Chemically structural similarity: II. Similar Clinical/Approved Drugs

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules.

●  The left chart: Distribution of similarity level between NPC240848 and all drugs/candidates.
●  The right table: Most similar clinical/approved drugs (Tc>=0.56 or Top200).

Similarity Score Similarity Level Drug ID Developmental Stage
0.8264 Intermediate Similarity NPD8172 Phase 2
0.8264 Intermediate Similarity NPD8173 Phase 2
0.8188 Intermediate Similarity NPD2584 Suspended
0.8069 Intermediate Similarity NPD7113 Clinical (unspecified phase)
0.7877 Intermediate Similarity NPD8416 Discontinued
0.7778 Intermediate Similarity NPD4177 Approved
0.7778 Intermediate Similarity NPD4175 Approved
0.777 Intermediate Similarity NPD5725 Approved
0.7703 Intermediate Similarity NPD8643 Discontinued
0.7651 Intermediate Similarity NPD6073 Approved
0.7639 Intermediate Similarity NPD2585 Clinical (unspecified phase)
0.7586 Intermediate Similarity NPD5339 Clinical (unspecified phase)
0.7568 Intermediate Similarity NPD7634 Clinical (unspecified phase)
0.75 Intermediate Similarity NPD7118 Clinical (unspecified phase)
0.7484 Intermediate Similarity NPD8323 Discontinued
0.7483 Intermediate Similarity NPD7979 Clinical (unspecified phase)
0.745 Intermediate Similarity NPD5747 Discontinued
0.7432 Intermediate Similarity NPD4794 Discontinued
0.7431 Intermediate Similarity NPD3072 Approved
0.7431 Intermediate Similarity NPD3073 Approved
0.7431 Intermediate Similarity NPD3071 Approved
0.7425 Intermediate Similarity NPD7965 Phase 2
0.7425 Intermediate Similarity NPD7964 Clinical (unspecified phase)
0.7417 Intermediate Similarity NPD4782 Clinical (unspecified phase)
0.74 Intermediate Similarity NPD4153 Approved
0.7368 Intermediate Similarity NPD6901 Phase 3
0.7365 Intermediate Similarity NPD4676 Approved
0.7365 Intermediate Similarity NPD4125 Approved
0.7361 Intermediate Similarity NPD4762 Approved
0.7361 Intermediate Similarity NPD4761 Approved
0.7355 Intermediate Similarity NPD5265 Approved
0.7355 Intermediate Similarity NPD5264 Approved
0.7338 Intermediate Similarity NPD8076 Discontinued
0.7329 Intermediate Similarity NPD8417 Discontinued
0.7296 Intermediate Similarity NPD7613 Discontinued
0.7255 Intermediate Similarity NPD6852 Discontinued
0.7248 Intermediate Similarity NPD5263 Approved
0.723 Intermediate Similarity NPD3608 Clinical (unspecified phase)
0.723 Intermediate Similarity NPD3588 Discontinued
0.7219 Intermediate Similarity NPD8126 Clinical (unspecified phase)
0.7219 Intermediate Similarity NPD8124 Phase 3
0.7171 Intermediate Similarity NPD4791 Clinical (unspecified phase)
0.717 Intermediate Similarity NPD6631 Clinical (unspecified phase)
0.7161 Intermediate Similarity NPD7511 Approved
0.7161 Intermediate Similarity NPD7512 Approved
0.7134 Intermediate Similarity NPD6860 Clinical (unspecified phase)
0.7123 Intermediate Similarity NPD4706 Clinical (unspecified phase)
0.7117 Intermediate Similarity NPD7267 Clinical (unspecified phase)
0.7097 Intermediate Similarity NPD7728 Clinical (unspecified phase)
0.7067 Intermediate Similarity NPD3040 Approved
0.7067 Intermediate Similarity NPD5759 Approved
0.7063 Intermediate Similarity NPD6088 Approved
0.7059 Intermediate Similarity NPD5296 Approved
0.7059 Intermediate Similarity NPD8265 Approved
0.7039 Intermediate Similarity NPD3632 Clinical (unspecified phase)
0.7032 Intermediate Similarity NPD4126 Approved
0.6988 Remote Similarity NPD4557 Approved
0.6968 Remote Similarity NPD7510 Approved
0.6966 Remote Similarity NPD8103 Clinical (unspecified phase)
0.6962 Remote Similarity NPD2437 Approved
0.6962 Remote Similarity NPD5341 Clinical (unspecified phase)
0.6962 Remote Similarity NPD2436 Approved
0.6957 Remote Similarity NPD7892 Clinical (unspecified phase)
0.6954 Remote Similarity NPD3626 Phase 3
0.6948 Remote Similarity NPD6623 Phase 3
0.6928 Remote Similarity NPD1329 Clinical (unspecified phase)
0.6928 Remote Similarity NPD2078 Clinical (unspecified phase)
0.6928 Remote Similarity NPD1330 Phase 2
0.689 Remote Similarity NPD8315 Phase 1
0.6887 Remote Similarity NPD3604 Clinical (unspecified phase)
0.6879 Remote Similarity NPD3480 Approved
0.6867 Remote Similarity NPD6792 Phase 3
0.6863 Remote Similarity NPD2051 Approved
0.6863 Remote Similarity NPD2043 Approved
0.6863 Remote Similarity NPD2047 Approved
0.6863 Remote Similarity NPD2049 Clinical (unspecified phase)
0.6863 Remote Similarity NPD2044 Approved
0.6863 Remote Similarity NPD6919 Clinical (unspecified phase)
0.6863 Remote Similarity NPD21 Approved
0.6863 Remote Similarity NPD2046 Approved
0.6863 Remote Similarity NPD2048 Approved
0.6863 Remote Similarity NPD2045 Approved
0.6863 Remote Similarity NPD2050 Clinical (unspecified phase)
0.6855 Remote Similarity NPD6681 Discovery
0.6842 Remote Similarity NPD3663 Approved
0.6842 Remote Similarity NPD3664 Approved
0.6842 Remote Similarity NPD3661 Approved
0.6842 Remote Similarity NPD3662 Phase 3
0.6839 Remote Similarity NPD5323 Approved
0.6818 Remote Similarity NPD4619 Approved
0.6818 Remote Similarity NPD4621 Approved
0.6803 Remote Similarity NPD4504 Clinical (unspecified phase)
0.68 Remote Similarity NPD4677 Discontinued
0.6797 Remote Similarity NPD2613 Approved
0.6792 Remote Similarity NPD2022 Approved
0.6788 Remote Similarity NPD4647 Approved
0.6788 Remote Similarity NPD4648 Approved
0.6788 Remote Similarity NPD4646 Approved
0.6779 Remote Similarity NPD4218 Approved
0.6779 Remote Similarity NPD2612 Approved
0.6779 Remote Similarity NPD3131 Approved
0.6779 Remote Similarity NPD4215 Approved
0.6779 Remote Similarity NPD3132 Approved
0.6779 Remote Similarity NPD2610 Approved
0.6779 Remote Similarity NPD2609 Approved
0.6779 Remote Similarity NPD2611 Approved
0.6779 Remote Similarity NPD4217 Approved
0.6779 Remote Similarity NPD2608 Approved
0.6779 Remote Similarity NPD4216 Approved
0.6774 Remote Similarity NPD2566 Approved
0.6774 Remote Similarity NPD4745 Approved
0.6774 Remote Similarity NPD3090 Approved
0.6774 Remote Similarity NPD2572 Clinical (unspecified phase)
0.6774 Remote Similarity NPD3089 Approved
0.6774 Remote Similarity NPD4746 Phase 3
0.6774 Remote Similarity NPD3087 Approved
0.6774 Remote Similarity NPD3088 Approved
0.6774 Remote Similarity NPD3616 Approved
0.6774 Remote Similarity NPD2571 Approved
0.6774 Remote Similarity NPD3614 Approved
0.6774 Remote Similarity NPD2574 Discontinued
0.6774 Remote Similarity NPD2573 Approved
0.6774 Remote Similarity NPD2570 Approved
0.6774 Remote Similarity NPD3615 Approved
0.6766 Remote Similarity NPD7749 Clinical (unspecified phase)
0.6759 Remote Similarity NPD1348 Approved
0.6755 Remote Similarity NPD3125 Approved
0.6725 Remote Similarity NPD8303 Discontinued
0.671 Remote Similarity NPD5299 Approved
0.6709 Remote Similarity NPD6295 Approved
0.6709 Remote Similarity NPD6294 Approved
0.6706 Remote Similarity NPD8351 Phase 2
0.6688 Remote Similarity NPD4685 Phase 3
0.6688 Remote Similarity NPD4684 Phase 3
0.6688 Remote Similarity NPD4686 Approved
0.6688 Remote Similarity NPD3908 Approved
0.6687 Remote Similarity NPD2087 Approved
0.6687 Remote Similarity NPD2088 Approved
0.6686 Remote Similarity NPD4508 Discontinued
0.6686 Remote Similarity NPD7599 Phase 2
0.6667 Remote Similarity NPD2117 Pre-registration
0.6667 Remote Similarity NPD2115 Approved
0.6667 Remote Similarity NPD3561 Clinical (unspecified phase)
0.6667 Remote Similarity NPD5298 Clinical (unspecified phase)
0.6667 Remote Similarity NPD5301 Clinical (unspecified phase)
0.6667 Remote Similarity NPD5230 Approved
0.6667 Remote Similarity NPD2116 Approved
0.6667 Remote Similarity NPD4151 Approved
0.6667 Remote Similarity NPD5229 Approved
0.6648 Remote Similarity NPD8022 Clinical (unspecified phase)
0.6647 Remote Similarity NPD7600 Phase 2
0.6647 Remote Similarity NPD7080 Clinical (unspecified phase)
0.6647 Remote Similarity NPD6303 Approved
0.6647 Remote Similarity NPD6304 Approved
0.6646 Remote Similarity NPD3988 Approved
0.6646 Remote Similarity NPD3987 Approved
0.6645 Remote Similarity NPD4738 Phase 2
0.6627 Remote Similarity NPD8630 Approved
0.6624 Remote Similarity NPD6309 Approved
0.6624 Remote Similarity NPD6310 Approved
0.6624 Remote Similarity NPD6311 Approved
0.6623 Remote Similarity NPD5204 Approved
0.6622 Remote Similarity NPD2994 Approved
0.6622 Remote Similarity NPD2217 Approved
0.6622 Remote Similarity NPD2218 Phase 2
0.6622 Remote Similarity NPD6343 Approved
0.6622 Remote Similarity NPD6345 Approved
0.6601 Remote Similarity NPD2628 Approved
0.6601 Remote Similarity NPD2627 Approved
0.6601 Remote Similarity NPD2159 Approved
0.6601 Remote Similarity NPD2626 Approved
0.6601 Remote Similarity NPD2160 Approved
0.6601 Remote Similarity NPD2625 Approved
0.6588 Remote Similarity NPD4566 Approved
0.6588 Remote Similarity NPD4567 Approved
0.6585 Remote Similarity NPD8290 Clinical (unspecified phase)
0.6584 Remote Similarity NPD4152 Approved
0.6584 Remote Similarity NPD7720 Phase 2
0.6577 Remote Similarity NPD3031 Approved
0.6577 Remote Similarity NPD3032 Approved
0.6577 Remote Similarity NPD3030 Approved
0.6575 Remote Similarity NPD747 Discontinued
0.6568 Remote Similarity NPD1663 Discontinued
0.6564 Remote Similarity NPD6676 Phase 2
0.6559 Remote Similarity NPD8339 Clinical (unspecified phase)
0.6554 Remote Similarity NPD5990 Approved
0.6554 Remote Similarity NPD5991 Approved
0.6545 Remote Similarity NPD5613 Approved
0.6545 Remote Similarity NPD5614 Approved
0.6541 Remote Similarity NPD5004 Approved
0.6536 Remote Similarity NPD2031 Discontinued
0.6528 Remote Similarity NPD3644 Approved
0.6528 Remote Similarity NPD3643 Approved
0.6528 Remote Similarity NPD3642 Approved
0.6524 Remote Similarity NPD6552 Clinical (unspecified phase)
0.6522 Remote Similarity NPD6897 Clinical (unspecified phase)
0.6513 Remote Similarity NPD6408 Phase 1
0.6507 Remote Similarity NPD3598 Phase 3
0.6506 Remote Similarity NPD4185 Clinical (unspecified phase)
0.649 Remote Similarity NPD2946 Phase 2

  Bioactivity similarity: Similar Natural Products in NPASS

Bioactivity similarity was calculated based on bioactivity descriptors of compounds. The bioactivity descriptors were calculated by a recently developed AI algorithm Chemical Checker (CC) [Nature Biotechnology, 38:1087–1096, 2020; Nature Communications, 12:3932, 2021], which evaluated bioactivity similarities at five levels:
A: chemistry similarity;
B: biological targets similarity;
C: networks similarity;
D: cell-based bioactivity similarity;
E: similarity based on clinical data.

Those 5 categories of CC bioactivity descriptors were calculated and then subjected to manifold projection using UMAP algorithm, to project all NPs on a 2-Dimensional space. The current NP was highlighted with a small circle in the 2-D map. Below figures: left-to-right, A-to-E.

A: chemistry similarity
B: biological targets similarity
C: networks similarity
D: cell-based bioactivity similarity
E: similarity based on clinical data