Structure

Physi-Chem Properties

Molecular Weight:  968.59
Volume:  1006.635
LogP:  3.259
LogD:  2.836
LogS:  -3.903
# Rotatable Bonds:  8
TPSA:  241.01
# H-Bond Aceptor:  19
# H-Bond Donor:  4
# Rings:  2
# Heavy Atoms:  19

MedChem Properties

QED Drug-Likeness Score:  0.217
Synthetic Accessibility Score:  6.293
Fsp3:  0.68
Lipinski Rule-of-5:  Rejected
Pfizer Rule:  Accepted
GSK Rule:  Rejected
BMS Rule:  0
Golden Triangle Rule:  Rejected
Chelating Alert:  0
PAINS Alert:  0

ADMET Properties (ADMETlab2.0)

ADMET: Absorption

Caco-2 Permeability:  -5.496
MDCK Permeability:  1.539544427942019e-05
Pgp-inhibitor:  1.0
Pgp-substrate:  0.97
Human Intestinal Absorption (HIA):  0.88
20% Bioavailability (F20%):  0.013
30% Bioavailability (F30%):  0.672

ADMET: Distribution

Blood-Brain-Barrier Penetration (BBB):  0.046
Plasma Protein Binding (PPB):  81.74633026123047%
Volume Distribution (VD):  0.75
Pgp-substrate:  26.99445152282715%

ADMET: Metabolism

CYP1A2-inhibitor:  0.0
CYP1A2-substrate:  0.017
CYP2C19-inhibitor:  0.035
CYP2C19-substrate:  0.125
CYP2C9-inhibitor:  0.094
CYP2C9-substrate:  0.016
CYP2D6-inhibitor:  0.001
CYP2D6-substrate:  0.036
CYP3A4-inhibitor:  0.879
CYP3A4-substrate:  0.802

ADMET: Excretion

Clearance (CL):  6.071
Half-life (T1/2):  0.116

ADMET: Toxicity

hERG Blockers:  0.002
Human Hepatotoxicity (H-HT):  0.961
Drug-inuced Liver Injury (DILI):  0.933
AMES Toxicity:  0.005
Rat Oral Acute Toxicity:  0.156
Maximum Recommended Daily Dose:  0.099
Skin Sensitization:  0.156
Carcinogencity:  0.012
Eye Corrosion:  0.003
Eye Irritation:  0.004
Respiratory Toxicity:  0.402

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  Natural Product: NPC168113

Natural Product ID:  NPC168113
Common Name*:   Dolastatin 12
IUPAC Name:   (2S,8S,14S,17S,20S,25S,28R,29S)-17-benzyl-2-[(2S)-butan-2-yl]-28-ethyl-7,13,16,20,22,22,24,25,29-nonamethyl-8-(2-methylpropyl)-14-propan-2-yl-1-oxa-4,7,10,13,16,19,24,27-octazacyclotriacontane-3,6,9,12,15,18,21,23,26,30-decone
Synonyms:   Dolastatin 12; Epidolastatin
Standard InCHIKey:  MLDFWFKDAWCBSV-JXVYMESPSA-N
Standard InCHI:  InChI=1S/C50H80N8O11/c1-17-30(7)41-46(65)52-26-38(59)56(14)36(24-28(3)4)44(63)51-27-39(60)58(16)40(29(5)6)47(66)57(15)37(25-34-22-20-19-21-23-34)45(64)53-32(9)42(61)50(11,12)49(68)55(13)33(10)43(62)54-35(18-2)31(8)48(67)69-41/h19-23,28-33,35-37,40-41H,17-18,24-27H2,1-16H3,(H,51,63)(H,52,65)(H,53,64)(H,54,62)/t30-,31-,32-,33-,35+,36-,37-,40-,41-/m0/s1
SMILES:  CC[C@@H]([C@@H]1OC(=O)[C@@H](C)[C@@H](CC)N=C(O)[C@H](C)N(C)C(=O)C(C)(C)C(=O)[C@H](C)N=C(O)[C@@H](N(C(=O)[C@@H](N(C(=O)CN=C([C@@H](N(C(=O)CN=C1O)C)CC(C)C)O)C)C(C)C)C)Cc1ccccc1)C
Synthetic Gene Cluster:   n.a.
ChEMBL Identifier:   CHEMBL448114
PubChem CID:   21603517
Chemical Classification**:  
  • CHEMONTID:0000000 [Organic compounds]
    • [CHEMONTID:0000264] Organic acids and derivatives
      • [CHEMONTID:0001813] Peptidomimetics
        • [CHEMONTID:0001961] Depsipeptides
          • [CHEMONTID:0001994] Cyclic depsipeptides

*Note: the InCHIKey will be temporarily assigned as the "Common Name" if no IUPAC name or alternative short name is available.
**Note: the Chemical Classification was calculated by NPClassifier Version 1.5. Reference: PMID:34662515.

  Species Source

Organism ID Organism Name Taxonomy Level Family SuperKingdom Isolation Part Collection Location Collection Time Reference
NPO26389 Lyngbya majuscula Species Oscillatoriaceae Bacteria n.a. n.a. n.a. PMID[10514329]
NPO26389 Lyngbya majuscula Species Oscillatoriaceae Bacteria n.a. n.a. n.a. PMID[10654420]
NPO26389 Lyngbya majuscula Species Oscillatoriaceae Bacteria n.a. n.a. n.a. PMID[10691708]
NPO26389 Lyngbya majuscula Species Oscillatoriaceae Bacteria n.a. palauan n.a. PMID[10691729]
NPO26389 Lyngbya majuscula Species Oscillatoriaceae Bacteria n.a. n.a. n.a. PMID[10843570]
NPO26389 Lyngbya majuscula Species Oscillatoriaceae Bacteria n.a. n.a. n.a. PMID[10924172]
NPO26389 Lyngbya majuscula Species Oscillatoriaceae Bacteria n.a. n.a. n.a. PMID[10978206]
NPO26389 Lyngbya majuscula Species Oscillatoriaceae Bacteria n.a. n.a. n.a. PMID[11076571]
NPO26389 Lyngbya majuscula Species Oscillatoriaceae Bacteria n.a. n.a. n.a. PMID[11076573]
NPO26389 Lyngbya majuscula Species Oscillatoriaceae Bacteria n.a. n.a. n.a. PMID[11076574]
NPO26389 Lyngbya majuscula Species Oscillatoriaceae Bacteria n.a. n.a. n.a. PMID[11277744]
NPO26389 Lyngbya majuscula Species Oscillatoriaceae Bacteria n.a. n.a. n.a. PMID[11389621]
NPO26389 Lyngbya majuscula Species Oscillatoriaceae Bacteria n.a. n.a. n.a. PMID[11430000]
NPO26389 Lyngbya majuscula Species Oscillatoriaceae Bacteria n.a. n.a. n.a. PMID[11473443]
NPO26389 Lyngbya majuscula Species Oscillatoriaceae Bacteria n.a. n.a. n.a. PMID[11922791]
NPO26389 Lyngbya majuscula Species Oscillatoriaceae Bacteria n.a. n.a. n.a. PMID[12762816]
NPO26389 Lyngbya majuscula Species Oscillatoriaceae Bacteria n.a. Papua New Guinea n.a. PMID[12828459]
NPO26389 Lyngbya majuscula Species Oscillatoriaceae Bacteria n.a. n.a. n.a. PMID[14575437]
NPO26389 Lyngbya majuscula Species Oscillatoriaceae Bacteria n.a. n.a. n.a. PMID[1517734]
NPO26389 Lyngbya majuscula Species Oscillatoriaceae Bacteria n.a. Papua New Guinea n.a. PMID[16643028]
NPO26389 Lyngbya majuscula Species Oscillatoriaceae Bacteria n.a. n.a. n.a. PMID[17125217]
NPO26389 Lyngbya majuscula Species Oscillatoriaceae Bacteria n.a. n.a. n.a. PMID[17441769]
NPO26389 Lyngbya majuscula Species Oscillatoriaceae Bacteria n.a. n.a. n.a. PMID[18444683]
NPO26389 Lyngbya majuscula Species Oscillatoriaceae Bacteria n.a. Singapore n.a. PMID[19093843]
NPO26389 Lyngbya majuscula Species Oscillatoriaceae Bacteria n.a. n.a. n.a. PMID[19489598]
NPO26389 Lyngbya majuscula Species Oscillatoriaceae Bacteria n.a. eastern Caribbean n.a. PMID[19739598]
NPO26389 Lyngbya majuscula Species Oscillatoriaceae Bacteria n.a. n.a. n.a. PMID[19839606]
NPO26389 Lyngbya majuscula Species Oscillatoriaceae Bacteria n.a. n.a. n.a. PMID[20030365]
NPO26389 Lyngbya majuscula Species Oscillatoriaceae Bacteria n.a. panamanian n.a. PMID[20158242]
NPO26389 Lyngbya majuscula Species Oscillatoriaceae Bacteria n.a. Floridian n.a. PMID[20166701]
NPO26389 Lyngbya majuscula Species Oscillatoriaceae Bacteria n.a. n.a. n.a. PMID[20936843]
NPO26389 Lyngbya majuscula Species Oscillatoriaceae Bacteria n.a. n.a. n.a. PMID[21138309]
NPO26389 Lyngbya majuscula Species Oscillatoriaceae Bacteria n.a. n.a. n.a. PMID[2128518]
NPO26389 Lyngbya majuscula Species Oscillatoriaceae Bacteria n.a. n.a. n.a. PMID[21341718]
NPO26389 Lyngbya majuscula Species Oscillatoriaceae Bacteria n.a. n.a. n.a. PMID[21539315]
NPO26389 Lyngbya majuscula Species Oscillatoriaceae Bacteria n.a. n.a. n.a. PMID[21806011]
NPO31131 Leptolyngbya species Species Leptolyngbyaceae Bacteria n.a. n.a. n.a. PMID[21806012]
NPO26389 Lyngbya majuscula Species Oscillatoriaceae Bacteria n.a. n.a. n.a. PMID[21999614]
NPO26389 Lyngbya majuscula Species Oscillatoriaceae Bacteria n.a. n.a. n.a. PMID[22035372]
NPO26389 Lyngbya majuscula Species Oscillatoriaceae Bacteria n.a. n.a. n.a. PMID[29792428]
NPO26389 Lyngbya majuscula Species Oscillatoriaceae Bacteria n.a. n.a. n.a. PMID[3924698]
NPO26389 Lyngbya majuscula Species Oscillatoriaceae Bacteria n.a. Caribbean n.a. PMID[7623050]
NPO26389 Lyngbya majuscula Species Oscillatoriaceae Bacteria n.a. Caribbean n.a. PMID[8699186]
NPO26389 Lyngbya majuscula Species Oscillatoriaceae Bacteria n.a. n.a. n.a. PMID[9584405]
NPO26389 Lyngbya majuscula Species Oscillatoriaceae Bacteria n.a. n.a. n.a. PMID[9599278]
NPO26389 Lyngbya majuscula Species Oscillatoriaceae Bacteria n.a. n.a. n.a. PMID[9599279]
NPO28999 Schizothrix calcicola Species Schizotrichaceae Bacteria n.a. n.a. n.a. PMID[9784156]
NPO26389 Lyngbya majuscula Species Oscillatoriaceae Bacteria n.a. n.a. n.a. PMID[9784156]
NPO28999 Schizothrix calcicola Species Schizotrichaceae Bacteria n.a. n.a. n.a. Database[UNPD]
NPO26389 Lyngbya majuscula Species Oscillatoriaceae Bacteria n.a. n.a. n.a. Database[UNPD]

☑ Note for Reference:
In addition to directly collecting NP source organism data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated them from below databases:
UNPD: Universal Natural Products Database [PMID: 23638153].
StreptomeDB: a database of streptomycetes natural products [PMID: 33051671].
TM-MC: a database of medicinal materials and chemical compounds in Northeast Asian traditional medicine [PMID: 26156871].
TCM@Taiwan: a Traditional Chinese Medicine database [PMID: 21253603].
TCMID: a Traditional Chinese Medicine database [PMID: 29106634].
TCMSP: The traditional Chinese medicine systems pharmacology database and analysis platform [PMID: 24735618].
HerDing: a herb recommendation system to treat diseases using genes and chemicals [PMID: 26980517].
MetaboLights: a metabolomics database [PMID: 27010336].
FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].

  NP Quantity Composition/Concentration

Organism ID NP ID Organism Material Preparation Organism Part NP Quantity (Standard) NP Quantity (Minimum) NP Quantity (Maximum) Quantity Unit Reference

☑ Note for Reference:
In addition to directly collecting NP quantitative data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated NP quantitative records for specific NP domains (e.g., NPS from foods or herbs) from domain-specific databases. These databases include:
DUKE: Dr. Duke's Phytochemical and Ethnobotanical Databases.
PHENOL EXPLORER: is the first comprehensive database on polyphenol content in foods [PMID: 24103452], its homepage can be accessed at here.
FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].

  Biological Activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference
NPT137 Cell Line L1210 Mus musculus Activity = 420.0 Zone units PMID[448272]
NPT730 Cell Line MC-38 Mus musculus Activity = 630.0 Zone units PMID[448272]
NPT730 Cell Line MC-38 Mus musculus T/C = 41.0 % PMID[448272]
NPT730 Cell Line MC-38 Mus musculus T/C = 92.0 % PMID[448272]
NPT91 Cell Line KB Homo sapiens MIC < 0.05 ug.mL-1 PMID[448272]
NPT114 Cell Line LoVo Homo sapiens MIC = 0.08 ug.mL-1 PMID[448272]
NPT168 Cell Line P388 Mus musculus ED50 = 7.5 10'-2 ug/ml PMID[448273]
NPT154 Individual Protein Mothers against decapentaplegic homolog 3 Homo sapiens Potency n.a. 3548.1 nM PMID[448275]
NPT478 Individual Protein Ataxin-2 Homo sapiens Potency n.a. 12589.3 nM PMID[448275]
NPT101 Individual Protein Glucagon-like peptide 1 receptor Homo sapiens Potency n.a. 562.3 nM PMID[448275]
NPT50 Individual Protein Tyrosyl-DNA phosphodiesterase 1 Homo sapiens Potency n.a. 183.6 nM PMID[448275]
NPT50 Individual Protein Tyrosyl-DNA phosphodiesterase 1 Homo sapiens Potency n.a. 130.0 nM PMID[448275]
NPT154 Individual Protein Mothers against decapentaplegic homolog 3 Homo sapiens Potency n.a. 5804.8 nM PMID[448275]
NPT154 Individual Protein Mothers against decapentaplegic homolog 3 Homo sapiens Potency n.a. 7307.8 nM PMID[448275]
NPT20529 NON-MOLECULAR NON-PROTEIN TARGET n.a. Activity = 270.0 Zone units PMID[448272]
NPT20529 NON-MOLECULAR NON-PROTEIN TARGET n.a. Activity = 480.0 Zone units PMID[448272]
NPT20529 NON-MOLECULAR NON-PROTEIN TARGET n.a. Activity = 500.0 Zone units PMID[448272]
NPT32 Organism Mus musculus Mus musculus Activity = -15.0 % PMID[448272]
NPT32 Organism Mus musculus Mus musculus Activity = -8.0 % PMID[448272]
NPT32 Organism Mus musculus Mus musculus Activity = -13.0 % PMID[448272]
NPT32 Organism Mus musculus Mus musculus Activity = -3.0 % PMID[448272]
NPT20529 NON-MOLECULAR NON-PROTEIN TARGET n.a. T/C = 68.0 % PMID[448272]
NPT20529 NON-MOLECULAR NON-PROTEIN TARGET n.a. T/C = 86.0 % PMID[448272]
NPT20529 NON-MOLECULAR NON-PROTEIN TARGET n.a. IC50 > 1000.0 nM PMID[448274]
NPT2 Others Unspecified Potency n.a. 501.2 nM PMID[448275]
NPT2 Others Unspecified Potency n.a. 920.0 nM PMID[448275]
NPT861 Individual Protein Isocitrate dehydrogenase [NADP] cytoplasmic Homo sapiens Potency n.a. 1299.5 nM PMID[448275]
NPT2 Others Unspecified Potency n.a. 1995.3 nM PMID[448275]
NPT2 Others Unspecified Potency n.a. 5804.8 nM PMID[448275]
NPT2 Others Unspecified Potency n.a. 2238.7 nM PMID[448275]

☑ Note for Activity Records:
☉ The quantitative biological activities were primarily integrated from ChEMBL (Version-30) database and were also directly collected from PubMed literature. PubMed PMID was provided as the reference link for each activity record.

  Chemically structural similarity: I. Similar Active Natural Products in NPASS

Top-200 similar NPs were calculated against the active-NP-set (includes 4,3285 NPs with experimentally-derived bioactivity available in NPASS)

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules. Tc lies between [0, 1] where '1' indicates the highest similarity. What is Tanimoto coefficient

●  The left chart: Distribution of similarity level between NPC168113 and all remaining natural products in the NPASS database.
●  The right table: Most similar natural products (Tc>=0.56 or Top200).

Similarity Score Similarity Level Natural Product ID
0.9924 High Similarity NPC197682
0.9624 High Similarity NPC176226
0.9328 High Similarity NPC476259
0.8897 High Similarity NPC68865
0.8897 High Similarity NPC127741
0.8553 High Similarity NPC186617
0.8511 High Similarity NPC139326
0.85 High Similarity NPC46098
0.85 High Similarity NPC268841
0.85 High Similarity NPC307357
0.8489 Intermediate Similarity NPC471264
0.8489 Intermediate Similarity NPC471265
0.8444 Intermediate Similarity NPC319766
0.844 Intermediate Similarity NPC263493
0.844 Intermediate Similarity NPC269398
0.8403 Intermediate Similarity NPC135121
0.8392 Intermediate Similarity NPC5620
0.8392 Intermediate Similarity NPC201244
0.8392 Intermediate Similarity NPC477217
0.838 Intermediate Similarity NPC161069
0.8369 Intermediate Similarity NPC163392
0.8369 Intermediate Similarity NPC239762
0.8321 Intermediate Similarity NPC237420
0.831 Intermediate Similarity NPC469426
0.831 Intermediate Similarity NPC469427
0.8298 Intermediate Similarity NPC476133
0.8298 Intermediate Similarity NPC92784
0.8298 Intermediate Similarity NPC178662
0.8298 Intermediate Similarity NPC98424
0.8298 Intermediate Similarity NPC470884
0.8288 Intermediate Similarity NPC2501
0.8276 Intermediate Similarity NPC145113
0.8267 Intermediate Similarity NPC297145
0.8267 Intermediate Similarity NPC197743
0.8264 Intermediate Similarity NPC209509
0.8258 Intermediate Similarity NPC471568
0.8258 Intermediate Similarity NPC473693
0.8207 Intermediate Similarity NPC262077
0.8194 Intermediate Similarity NPC476978
0.8194 Intermediate Similarity NPC52748
0.8176 Intermediate Similarity NPC162104
0.8163 Intermediate Similarity NPC129666
0.8151 Intermediate Similarity NPC138775
0.8138 Intermediate Similarity NPC315266
0.8121 Intermediate Similarity NPC122590
0.8095 Intermediate Similarity NPC471821
0.8095 Intermediate Similarity NPC471820
0.8095 Intermediate Similarity NPC105717
0.8071 Intermediate Similarity NPC246079
0.8045 Intermediate Similarity NPC470546
0.8039 Intermediate Similarity NPC471527
0.8014 Intermediate Similarity NPC316008
0.8014 Intermediate Similarity NPC287401
0.8014 Intermediate Similarity NPC313867
0.7974 Intermediate Similarity NPC1390
0.7974 Intermediate Similarity NPC62104
0.797 Intermediate Similarity NPC470545
0.7959 Intermediate Similarity NPC314358
0.7945 Intermediate Similarity NPC314388
0.7945 Intermediate Similarity NPC315283
0.7905 Intermediate Similarity NPC225648
0.7905 Intermediate Similarity NPC329761
0.7895 Intermediate Similarity NPC470544
0.7883 Intermediate Similarity NPC6975
0.7883 Intermediate Similarity NPC46427
0.7881 Intermediate Similarity NPC286551
0.7881 Intermediate Similarity NPC473341
0.7872 Intermediate Similarity NPC130309
0.7852 Intermediate Similarity NPC240848
0.7836 Intermediate Similarity NPC169328
0.7821 Intermediate Similarity NPC471053
0.7821 Intermediate Similarity NPC471052
0.7821 Intermediate Similarity NPC471051
0.781 Intermediate Similarity NPC252878
0.7778 Intermediate Similarity NPC310467
0.7771 Intermediate Similarity NPC217804
0.7771 Intermediate Similarity NPC210377
0.7771 Intermediate Similarity NPC22883
0.7771 Intermediate Similarity NPC5719
0.777 Intermediate Similarity NPC101719
0.777 Intermediate Similarity NPC322878
0.7761 Intermediate Similarity NPC239357
0.7748 Intermediate Similarity NPC7817
0.7748 Intermediate Similarity NPC475168
0.7737 Intermediate Similarity NPC202521
0.7722 Intermediate Similarity NPC15068
0.7708 Intermediate Similarity NPC248283
0.7698 Intermediate Similarity NPC222466
0.7673 Intermediate Similarity NPC63040
0.7671 Intermediate Similarity NPC132636
0.7664 Intermediate Similarity NPC200964
0.7664 Intermediate Similarity NPC476990
0.7647 Intermediate Similarity NPC314992
0.7622 Intermediate Similarity NPC255447
0.7609 Intermediate Similarity NPC71684
0.7606 Intermediate Similarity NPC473322
0.7597 Intermediate Similarity NPC470902
0.7593 Intermediate Similarity NPC248670
0.7582 Intermediate Similarity NPC300443
0.7571 Intermediate Similarity NPC22746
0.7552 Intermediate Similarity NPC300315
0.7546 Intermediate Similarity NPC26108
0.7546 Intermediate Similarity NPC477462
0.7536 Intermediate Similarity NPC478014
0.7536 Intermediate Similarity NPC478015
0.7536 Intermediate Similarity NPC478016
0.7536 Intermediate Similarity NPC45777
0.7536 Intermediate Similarity NPC477061
0.7535 Intermediate Similarity NPC152850
0.7535 Intermediate Similarity NPC239990
0.7535 Intermediate Similarity NPC89923
0.7535 Intermediate Similarity NPC105114
0.7535 Intermediate Similarity NPC71933
0.7518 Intermediate Similarity NPC47667
0.75 Intermediate Similarity NPC2265
0.75 Intermediate Similarity NPC50016
0.7483 Intermediate Similarity NPC81026
0.7469 Intermediate Similarity NPC196091
0.7465 Intermediate Similarity NPC136453
0.7447 Intermediate Similarity NPC476260
0.7447 Intermediate Similarity NPC476241
0.7439 Intermediate Similarity NPC473354
0.7439 Intermediate Similarity NPC471165
0.7421 Intermediate Similarity NPC73655
0.7417 Intermediate Similarity NPC266741
0.7407 Intermediate Similarity NPC276949
0.7407 Intermediate Similarity NPC35850
0.74 Intermediate Similarity NPC77905
0.7394 Intermediate Similarity NPC476125
0.7394 Intermediate Similarity NPC476179
0.7379 Intermediate Similarity NPC157311
0.7378 Intermediate Similarity NPC273755
0.7376 Intermediate Similarity NPC35996
0.7372 Intermediate Similarity NPC39431
0.7365 Intermediate Similarity NPC6570
0.7362 Intermediate Similarity NPC475204
0.7362 Intermediate Similarity NPC475123
0.7362 Intermediate Similarity NPC40234
0.7362 Intermediate Similarity NPC46009
0.7361 Intermediate Similarity NPC469666
0.7361 Intermediate Similarity NPC111428
0.7353 Intermediate Similarity NPC33742
0.7346 Intermediate Similarity NPC107938
0.7346 Intermediate Similarity NPC294516
0.7333 Intermediate Similarity NPC317362
0.7333 Intermediate Similarity NPC326407
0.7333 Intermediate Similarity NPC317725
0.7333 Intermediate Similarity NPC318930
0.7329 Intermediate Similarity NPC8761
0.7329 Intermediate Similarity NPC44805
0.7329 Intermediate Similarity NPC472923
0.7329 Intermediate Similarity NPC63931
0.7305 Intermediate Similarity NPC45037
0.7301 Intermediate Similarity NPC473000
0.7296 Intermediate Similarity NPC24617
0.7286 Intermediate Similarity NPC476183
0.7286 Intermediate Similarity NPC190663
0.7254 Intermediate Similarity NPC474082
0.7254 Intermediate Similarity NPC175726
0.725 Intermediate Similarity NPC114806
0.725 Intermediate Similarity NPC469901
0.7248 Intermediate Similarity NPC43755
0.7239 Intermediate Similarity NPC473502
0.7234 Intermediate Similarity NPC476184
0.7234 Intermediate Similarity NPC476281
0.723 Intermediate Similarity NPC141050
0.7229 Intermediate Similarity NPC476227
0.7229 Intermediate Similarity NPC473402
0.7219 Intermediate Similarity NPC476321
0.7212 Intermediate Similarity NPC89831
0.7212 Intermediate Similarity NPC230611
0.7206 Intermediate Similarity NPC273814
0.7206 Intermediate Similarity NPC474584
0.7192 Intermediate Similarity NPC200589
0.7188 Intermediate Similarity NPC469898
0.7183 Intermediate Similarity NPC160493
0.7176 Intermediate Similarity NPC471526
0.7169 Intermediate Similarity NPC137627
0.7169 Intermediate Similarity NPC306804
0.7135 Intermediate Similarity NPC471048
0.7135 Intermediate Similarity NPC471050
0.7135 Intermediate Similarity NPC471049
0.7135 Intermediate Similarity NPC294951
0.7134 Intermediate Similarity NPC209463
0.7133 Intermediate Similarity NPC476278
0.7126 Intermediate Similarity NPC159767
0.7126 Intermediate Similarity NPC155506
0.7126 Intermediate Similarity NPC279871
0.7125 Intermediate Similarity NPC324850
0.7121 Intermediate Similarity NPC224610
0.7121 Intermediate Similarity NPC88267
0.7121 Intermediate Similarity NPC194390
0.7121 Intermediate Similarity NPC113326
0.7115 Intermediate Similarity NPC283783
0.7107 Intermediate Similarity NPC469903
0.7101 Intermediate Similarity NPC475421
0.7089 Intermediate Similarity NPC262166
0.7073 Intermediate Similarity NPC61004
0.707 Intermediate Similarity NPC324081
0.705 Intermediate Similarity NPC197470

  Chemically structural similarity: II. Similar Clinical/Approved Drugs

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules.

●  The left chart: Distribution of similarity level between NPC168113 and all drugs/candidates.
●  The right table: Most similar clinical/approved drugs (Tc>=0.56 or Top200).

Similarity Score Similarity Level Drug ID Developmental Stage
0.7972 Intermediate Similarity NPD8173 Phase 2
0.7972 Intermediate Similarity NPD8172 Phase 2
0.7958 Intermediate Similarity NPD8416 Discontinued
0.7755 Intermediate Similarity NPD8076 Discontinued
0.7655 Intermediate Similarity NPD8643 Discontinued
0.7655 Intermediate Similarity NPD7113 Clinical (unspecified phase)
0.7647 Intermediate Similarity NPD2218 Phase 2
0.7647 Intermediate Similarity NPD2217 Approved
0.7626 Intermediate Similarity NPD2584 Suspended
0.7622 Intermediate Similarity NPD6919 Clinical (unspecified phase)
0.7551 Intermediate Similarity NPD6852 Discontinued
0.755 Intermediate Similarity NPD8323 Discontinued
0.7483 Intermediate Similarity NPD3626 Phase 3
0.7465 Intermediate Similarity NPD2585 Clinical (unspecified phase)
0.7432 Intermediate Similarity NPD6901 Phase 3
0.7413 Intermediate Similarity NPD3608 Clinical (unspecified phase)
0.7389 Intermediate Similarity NPD8417 Discontinued
0.7351 Intermediate Similarity NPD6681 Discovery
0.7241 Intermediate Similarity NPD4175 Approved
0.7241 Intermediate Similarity NPD4177 Approved
0.7237 Intermediate Similarity NPD6119 Clinical (unspecified phase)
0.723 Intermediate Similarity NPD4153 Approved
0.723 Intermediate Similarity NPD8265 Approved
0.7226 Intermediate Similarity NPD7892 Clinical (unspecified phase)
0.7214 Intermediate Similarity NPD4504 Clinical (unspecified phase)
0.7192 Intermediate Similarity NPD4125 Approved
0.7172 Intermediate Similarity NPD5339 Clinical (unspecified phase)
0.7171 Intermediate Similarity NPD4152 Approved
0.7143 Intermediate Similarity NPD4557 Approved
0.7143 Intermediate Similarity NPD4738 Phase 2
0.7133 Intermediate Similarity NPD5725 Approved
0.7133 Intermediate Similarity NPD6073 Approved
0.7125 Intermediate Similarity NPD7749 Clinical (unspecified phase)
0.7115 Intermediate Similarity NPD6088 Approved
0.7114 Intermediate Similarity NPD6623 Phase 3
0.7083 Intermediate Similarity NPD4677 Discontinued
0.7075 Intermediate Similarity NPD7979 Clinical (unspecified phase)
0.7059 Intermediate Similarity NPD2022 Approved
0.705 Intermediate Similarity NPD1348 Approved
0.7047 Intermediate Similarity NPD3561 Clinical (unspecified phase)
0.7044 Intermediate Similarity NPD8315 Phase 1
0.7042 Intermediate Similarity NPD7342 Discontinued
0.7039 Intermediate Similarity NPD7728 Clinical (unspecified phase)
0.7037 Intermediate Similarity NPD7599 Phase 2
0.7034 Intermediate Similarity NPD5367 Discontinued
0.7034 Intermediate Similarity NPD3125 Approved
0.7027 Intermediate Similarity NPD2050 Clinical (unspecified phase)
0.7027 Intermediate Similarity NPD2045 Approved
0.7027 Intermediate Similarity NPD2043 Approved
0.7027 Intermediate Similarity NPD2044 Approved
0.7027 Intermediate Similarity NPD2046 Approved
0.7027 Intermediate Similarity NPD2047 Approved
0.7027 Intermediate Similarity NPD21 Approved
0.7027 Intermediate Similarity NPD2048 Approved
0.7027 Intermediate Similarity NPD2049 Clinical (unspecified phase)
0.7027 Intermediate Similarity NPD2051 Approved
0.7014 Intermediate Similarity NPD3072 Approved
0.7014 Intermediate Similarity NPD3073 Approved
0.7014 Intermediate Similarity NPD3071 Approved
0.7007 Intermediate Similarity NPD3040 Approved
0.6994 Remote Similarity NPD7600 Phase 2
0.6974 Remote Similarity NPD6295 Approved
0.6974 Remote Similarity NPD6294 Approved
0.697 Remote Similarity NPD8303 Discontinued
0.6968 Remote Similarity NPD6860 Clinical (unspecified phase)
0.6964 Remote Similarity NPD8124 Phase 3
0.6964 Remote Similarity NPD8126 Clinical (unspecified phase)
0.6948 Remote Similarity NPD2088 Approved
0.6948 Remote Similarity NPD2087 Approved
0.6944 Remote Similarity NPD4706 Clinical (unspecified phase)
0.6944 Remote Similarity NPD4761 Approved
0.6944 Remote Similarity NPD4762 Approved
0.6939 Remote Similarity NPD3604 Clinical (unspecified phase)
0.6937 Remote Similarity NPD4648 Approved
0.6937 Remote Similarity NPD4646 Approved
0.6937 Remote Similarity NPD4647 Approved
0.6933 Remote Similarity NPD7634 Clinical (unspecified phase)
0.6933 Remote Similarity NPD5747 Discontinued
0.6928 Remote Similarity NPD3480 Approved
0.6918 Remote Similarity NPD5230 Approved
0.6918 Remote Similarity NPD5229 Approved
0.6918 Remote Similarity NPD7613 Discontinued
0.6914 Remote Similarity NPD7118 Clinical (unspecified phase)
0.6908 Remote Similarity NPD4782 Clinical (unspecified phase)
0.6899 Remote Similarity NPD6631 Clinical (unspecified phase)
0.6897 Remote Similarity NPD7814 Approved
0.6887 Remote Similarity NPD5323 Approved
0.6887 Remote Similarity NPD5296 Approved
0.6867 Remote Similarity NPD1330 Phase 2
0.6867 Remote Similarity NPD1329 Clinical (unspecified phase)
0.6853 Remote Similarity NPD5981 Approved
0.6846 Remote Similarity NPD5263 Approved
0.6846 Remote Similarity NPD4676 Approved
0.6839 Remote Similarity NPD7720 Phase 2
0.6832 Remote Similarity NPD6670 Clinical (unspecified phase)
0.6824 Remote Similarity NPD3588 Discontinued
0.6821 Remote Similarity NPD5729 Clinical (unspecified phase)
0.6818 Remote Similarity NPD5301 Clinical (unspecified phase)
0.6815 Remote Similarity NPD5298 Clinical (unspecified phase)
0.6815 Remote Similarity NPD1968 Approved
0.6815 Remote Similarity NPD1967 Approved
0.6812 Remote Similarity NPD3644 Approved
0.6812 Remote Similarity NPD3643 Approved
0.6812 Remote Similarity NPD3642 Approved
0.6803 Remote Similarity NPD6325 Discontinued
0.6795 Remote Similarity NPD2436 Approved
0.6795 Remote Similarity NPD2437 Approved
0.6792 Remote Similarity NPD5614 Approved
0.6792 Remote Similarity NPD5613 Approved
0.6792 Remote Similarity NPD3987 Approved
0.6792 Remote Similarity NPD3988 Approved
0.6776 Remote Similarity NPD4791 Clinical (unspecified phase)
0.6772 Remote Similarity NPD6552 Clinical (unspecified phase)
0.6765 Remote Similarity NPD7130 Phase 3
0.6759 Remote Similarity NPD7815 Approved
0.6759 Remote Similarity NPD7813 Approved
0.6755 Remote Similarity NPD5299 Approved
0.6755 Remote Similarity NPD5581 Approved
0.6748 Remote Similarity NPD7267 Clinical (unspecified phase)
0.6748 Remote Similarity NPD2891 Approved
0.6747 Remote Similarity NPD8351 Phase 2
0.6746 Remote Similarity NPD7608 Discontinued
0.673 Remote Similarity NPD8290 Clinical (unspecified phase)
0.6714 Remote Similarity NPD2607 Approved
0.6713 Remote Similarity NPD7522 Discontinued
0.6711 Remote Similarity NPD8118 Discontinued
0.6689 Remote Similarity NPD4794 Discontinued
0.6687 Remote Similarity NPD7080 Clinical (unspecified phase)
0.6686 Remote Similarity NPD7485 Phase 3
0.6686 Remote Similarity NPD7484 Phase 3
0.6667 Remote Similarity NPD7512 Approved
0.6667 Remote Similarity NPD7964 Clinical (unspecified phase)
0.6667 Remote Similarity NPD7511 Approved
0.6667 Remote Similarity NPD7965 Phase 2
0.6647 Remote Similarity NPD5681 Clinical (unspecified phase)
0.6646 Remote Similarity NPD5264 Approved
0.6646 Remote Similarity NPD5265 Approved
0.6645 Remote Similarity NPD4214 Discontinued
0.6645 Remote Similarity NPD7908 Discontinued
0.6645 Remote Similarity NPD2078 Clinical (unspecified phase)
0.6644 Remote Similarity NPD2628 Approved
0.6644 Remote Similarity NPD2160 Approved
0.6644 Remote Similarity NPD2627 Approved
0.6644 Remote Similarity NPD2159 Approved
0.6644 Remote Similarity NPD2626 Approved
0.6644 Remote Similarity NPD2625 Approved
0.6643 Remote Similarity NPD5291 Approved
0.6643 Remote Similarity NPD5292 Approved
0.6643 Remote Similarity NPD3123 Discovery
0.6627 Remote Similarity NPD4508 Discontinued
0.6625 Remote Similarity NPD3519 Discontinued
0.6624 Remote Similarity NPD7978 Discontinued
0.6623 Remote Similarity NPD4757 Clinical (unspecified phase)
0.6623 Remote Similarity NPD2613 Approved
0.6623 Remote Similarity NPD6359 Clinical (unspecified phase)
0.6605 Remote Similarity NPD6078 Clinical (unspecified phase)
0.6604 Remote Similarity NPD6676 Phase 2
0.66 Remote Similarity NPD4151 Approved
0.6599 Remote Similarity NPD4216 Approved
0.6599 Remote Similarity NPD3131 Approved
0.6599 Remote Similarity NPD4218 Approved
0.6599 Remote Similarity NPD2612 Approved
0.6599 Remote Similarity NPD2608 Approved
0.6599 Remote Similarity NPD4217 Approved
0.6599 Remote Similarity NPD3132 Approved
0.6599 Remote Similarity NPD2610 Approved
0.6599 Remote Similarity NPD2611 Approved
0.6599 Remote Similarity NPD2609 Approved
0.6599 Remote Similarity NPD4215 Approved
0.659 Remote Similarity NPD8022 Clinical (unspecified phase)
0.6584 Remote Similarity NPD2013 Approved
0.6584 Remote Similarity NPD2016 Approved
0.6584 Remote Similarity NPD2014 Approved
0.6582 Remote Similarity NPD5341 Clinical (unspecified phase)
0.6577 Remote Similarity NPD6792 Phase 3
0.6573 Remote Similarity NPD7508 Discontinued
0.6569 Remote Similarity NPD1040 Phase 2
0.6564 Remote Similarity NPD7131 Phase 3
0.6562 Remote Similarity NPD7602 Clinical (unspecified phase)
0.6561 Remote Similarity NPD6897 Clinical (unspecified phase)
0.6556 Remote Similarity NPD5759 Approved
0.6556 Remote Similarity NPD7828 Discontinued
0.6556 Remote Similarity NPD3662 Phase 3
0.6556 Remote Similarity NPD3661 Approved
0.6556 Remote Similarity NPD3663 Approved
0.6556 Remote Similarity NPD3664 Approved
0.6554 Remote Similarity NPD5108 Clinical (unspecified phase)
0.6552 Remote Similarity NPD6343 Approved
0.6552 Remote Similarity NPD6345 Approved
0.6543 Remote Similarity NPD4432 Discontinued
0.6543 Remote Similarity NPD4185 Clinical (unspecified phase)
0.6543 Remote Similarity NPD4682 Phase 2
0.6536 Remote Similarity NPD3632 Clinical (unspecified phase)
0.6527 Remote Similarity NPD4567 Approved
0.6527 Remote Similarity NPD4566 Approved
0.6522 Remote Similarity NPD5704 Approved
0.6522 Remote Similarity NPD5706 Approved
0.6522 Remote Similarity NPD5705 Approved
0.6513 Remote Similarity NPD5202 Clinical (unspecified phase)
0.6507 Remote Similarity NPD4209 Clinical (unspecified phase)

  Bioactivity similarity: Similar Natural Products in NPASS

Bioactivity similarity was calculated based on bioactivity descriptors of compounds. The bioactivity descriptors were calculated by a recently developed AI algorithm Chemical Checker (CC) [Nature Biotechnology, 38:1087–1096, 2020; Nature Communications, 12:3932, 2021], which evaluated bioactivity similarities at five levels:
A: chemistry similarity;
B: biological targets similarity;
C: networks similarity;
D: cell-based bioactivity similarity;
E: similarity based on clinical data.

Those 5 categories of CC bioactivity descriptors were calculated and then subjected to manifold projection using UMAP algorithm, to project all NPs on a 2-Dimensional space. The current NP was highlighted with a small circle in the 2-D map. Below figures: left-to-right, A-to-E.

A: chemistry similarity
B: biological targets similarity
C: networks similarity
D: cell-based bioactivity similarity
E: similarity based on clinical data