Structure

Physi-Chem Properties

Molecular Weight:  307.21
Volume:  338.149
LogP:  3.937
LogD:  3.857
LogS:  -3.425
# Rotatable Bonds:  11
TPSA:  58.56
# H-Bond Aceptor:  4
# H-Bond Donor:  2
# Rings:  1
# Heavy Atoms:  4

MedChem Properties

QED Drug-Likeness Score:  0.642
Synthetic Accessibility Score:  1.877
Fsp3:  0.611
Lipinski Rule-of-5:  Accepted
Pfizer Rule:  Rejected
GSK Rule:  Accepted
BMS Rule:  0
Golden Triangle Rule:  Accepted
Chelating Alert:  1
PAINS Alert:  0

ADMET Properties (ADMETlab2.0)

ADMET: Absorption

Caco-2 Permeability:  -4.541
MDCK Permeability:  2.3652006348129362e-05
Pgp-inhibitor:  0.007
Pgp-substrate:  0.016
Human Intestinal Absorption (HIA):  0.003
20% Bioavailability (F20%):  0.965
30% Bioavailability (F30%):  0.072

ADMET: Distribution

Blood-Brain-Barrier Penetration (BBB):  0.911
Plasma Protein Binding (PPB):  96.21969604492188%
Volume Distribution (VD):  0.733
Pgp-substrate:  3.389392137527466%

ADMET: Metabolism

CYP1A2-inhibitor:  0.759
CYP1A2-substrate:  0.903
CYP2C19-inhibitor:  0.902
CYP2C19-substrate:  0.779
CYP2C9-inhibitor:  0.722
CYP2C9-substrate:  0.94
CYP2D6-inhibitor:  0.836
CYP2D6-substrate:  0.859
CYP3A4-inhibitor:  0.879
CYP3A4-substrate:  0.222

ADMET: Excretion

Clearance (CL):  10.66
Half-life (T1/2):  0.856

ADMET: Toxicity

hERG Blockers:  0.122
Human Hepatotoxicity (H-HT):  0.136
Drug-inuced Liver Injury (DILI):  0.067
AMES Toxicity:  0.051
Rat Oral Acute Toxicity:  0.036
Maximum Recommended Daily Dose:  0.019
Skin Sensitization:  0.877
Carcinogencity:  0.04
Eye Corrosion:  0.006
Eye Irritation:  0.07
Respiratory Toxicity:  0.06

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General Info & Identifiers & Properties  
Structure MOL file  
Source Organisms  
Biological Activities  
Similar NPs/Drugs  

  Natural Product: NPC218530

Natural Product ID:  NPC218530
Common Name*:   Dihydrocapsaicin
IUPAC Name:   N-[(4-hydroxy-3-methoxyphenyl)methyl]-8-methylnonanamide
Synonyms:   Dihydrocapsaicin
Standard InCHIKey:  XJQPQKLURWNAAH-UHFFFAOYSA-N
Standard InCHI:  InChI=1S/C18H29NO3/c1-14(2)8-6-4-5-7-9-18(21)19-13-15-10-11-16(20)17(12-15)22-3/h10-12,14,20H,4-9,13H2,1-3H3,(H,19,21)
SMILES:  COc1cc(CN=C(CCCCCCC(C)C)O)ccc1O
Synthetic Gene Cluster:   n.a.
ChEMBL Identifier:   CHEMBL311158
PubChem CID:   107982
Chemical Classification**:  
  • CHEMONTID:0000000 [Organic compounds]
    • [CHEMONTID:0002448] Benzenoids
      • [CHEMONTID:0000134] Phenols
        • [CHEMONTID:0000190] Methoxyphenols

*Note: the InCHIKey will be temporarily assigned as the "Common Name" if no IUPAC name or alternative short name is available.
**Note: the Chemical Classification was calculated by NPClassifier Version 1.5. Reference: PMID:34662515.

  Species Source

Organism ID Organism Name Taxonomy Level Family SuperKingdom Isolation Part Collection Location Collection Time Reference
NPO25269 Ganoderma lucidum Species Ganodermataceae Eukaryota n.a. n.a. n.a. DOI[10.1016/j.phytochem.2005.10.025]
NPO25269 Ganoderma lucidum Species Ganodermataceae Eukaryota n.a. fruit body n.a. PMID[11520245]
NPO25269 Ganoderma lucidum Species Ganodermataceae Eukaryota n.a. n.a. n.a. PMID[12045343]
NPO16501 Capsicum annuum Species Solanaceae Eukaryota n.a. fruit n.a. PMID[12932131]
NPO25269 Ganoderma lucidum Species Ganodermataceae Eukaryota n.a. n.a. n.a. PMID[14695801]
NPO25269 Ganoderma lucidum Species Ganodermataceae Eukaryota n.a. n.a. n.a. PMID[1791484]
NPO25269 Ganoderma lucidum Species Ganodermataceae Eukaryota n.a. spore n.a. PMID[18827358]
NPO25269 Ganoderma lucidum Species Ganodermataceae Eukaryota fruiting bodies Nagano, Japan 2008-MAY PMID[20039640]
NPO25269 Ganoderma lucidum Species Ganodermataceae Eukaryota n.a. n.a. n.a. PMID[20384295]
NPO16501 Capsicum annuum Species Solanaceae Eukaryota n.a. n.a. n.a. PMID[20460582]
NPO25269 Ganoderma lucidum Species Ganodermataceae Eukaryota fruiting bodies n.a. n.a. PMID[20702092]
NPO25269 Ganoderma lucidum Species Ganodermataceae Eukaryota fruiting bodies n.a. n.a. PMID[21924611]
NPO25269 Ganoderma lucidum Species Ganodermataceae Eukaryota n.a. n.a. n.a. PMID[22014750]
NPO25269 Ganoderma lucidum Species Ganodermataceae Eukaryota n.a. fruit body n.a. PMID[22044278]
NPO25269 Ganoderma lucidum Species Ganodermataceae Eukaryota fruiting body n.a. n.a. PMID[22047696]
NPO16501 Capsicum annuum Species Solanaceae Eukaryota n.a. fruit n.a. PMID[25172746]
NPO25269 Ganoderma lucidum Species Ganodermataceae Eukaryota n.a. n.a. n.a. PMID[26222905]
NPO16501 Capsicum annuum Species Solanaceae Eukaryota n.a. n.a. n.a. PMID[8910532]
NPO25269 Ganoderma lucidum Species Ganodermataceae Eukaryota n.a. fruit body n.a. PMID[9635497]
NPO16501 Capsicum annuum Species Solanaceae Eukaryota n.a. n.a. Database[FooDB]
NPO16501 Capsicum annuum Species Solanaceae Eukaryota Fruit n.a. n.a. Database[FooDB]
NPO16501 Capsicum annuum Species Solanaceae Eukaryota Leaf n.a. n.a. Database[FooDB]
NPO16501 Capsicum annuum Species Solanaceae Eukaryota Pericarp n.a. n.a. Database[FooDB]
NPO16501 Capsicum annuum Species Solanaceae Eukaryota Resin, Exudate, Sap n.a. n.a. Database[FooDB]
NPO16501 Capsicum annuum Species Solanaceae Eukaryota Root n.a. n.a. Database[FooDB]
NPO16501 Capsicum annuum Species Solanaceae Eukaryota Seed n.a. n.a. Database[FooDB]
NPO16501 Capsicum annuum Species Solanaceae Eukaryota Tissue Culture n.a. n.a. Database[FooDB]
NPO24552 Capsicum frutescens Species Solanaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO16501 Capsicum annuum Species Solanaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO25269 Ganoderma lucidum Species Ganodermataceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO24552 Capsicum frutescens Species Solanaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO25269 Ganoderma lucidum Species Ganodermataceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO16501 Capsicum annuum Species Solanaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO25269 Ganoderma lucidum Species Ganodermataceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO24552 Capsicum frutescens Species Solanaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO16501 Capsicum annuum Species Solanaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO16501 Capsicum annuum Species Solanaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO25269 Ganoderma lucidum Species Ganodermataceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO18790 Streptomyces roseofulvus Species Streptomycetaceae Bacteria n.a. n.a. n.a. Database[UNPD]
NPO16501 Capsicum annuum Species Solanaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO25269 Ganoderma lucidum Species Ganodermataceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO19468 Madia sativa Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]

☑ Note for Reference:
In addition to directly collecting NP source organism data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated them from below databases:
UNPD: Universal Natural Products Database [PMID: 23638153].
StreptomeDB: a database of streptomycetes natural products [PMID: 33051671].
TM-MC: a database of medicinal materials and chemical compounds in Northeast Asian traditional medicine [PMID: 26156871].
TCM@Taiwan: a Traditional Chinese Medicine database [PMID: 21253603].
TCMID: a Traditional Chinese Medicine database [PMID: 29106634].
TCMSP: The traditional Chinese medicine systems pharmacology database and analysis platform [PMID: 24735618].
HerDing: a herb recommendation system to treat diseases using genes and chemicals [PMID: 26980517].
MetaboLights: a metabolomics database [PMID: 27010336].
FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].

  NP Quantity Composition/Concentration

Organism ID NP ID Organism Material Preparation Organism Part NP Quantity (Standard) NP Quantity (Minimum) NP Quantity (Maximum) Quantity Unit Reference
NPO16501 NPC218530 Other (raw) Fruit 85.15 7.5 162.8 mg/100g Database [DUKE]
NPO16501 NPC218530 Raw Fruit 85.15 7.5 162.8 mg/100g Database [DUKE]
NPO16501 NPC218530 Raw Resin, Exudate, Sap 32800 32800 32800 mg/100g Database [DUKE]

☑ Note for Reference:
In addition to directly collecting NP quantitative data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated NP quantitative records for specific NP domains (e.g., NPS from foods or herbs) from domain-specific databases. These databases include:
DUKE: Dr. Duke's Phytochemical and Ethnobotanical Databases.
PHENOL EXPLORER: is the first comprehensive database on polyphenol content in foods [PMID: 24103452], its homepage can be accessed at here.
FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].

  Biological Activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference
NPT442 Individual Protein Ferritin light chain Equus caballus Potency = 22387.2 nM PMID[469558]
NPT210 Individual Protein Thyroid stimulating hormone receptor Homo sapiens Potency = 39810.7 nM PMID[469561]
NPT213 Individual Protein Cytochrome P450 2C19 Homo sapiens Potency = 10000.0 nM PMID[469561]
NPT213 Individual Protein Cytochrome P450 2C19 Homo sapiens Potency = 10000.0 nM PMID[469562]
NPT54 Individual Protein Nonstructural protein 1 Influenza A virus Potency = 31622.8 nM PMID[469558]
NPT150 Individual Protein Anthrax lethal factor Bacillus anthracis Potency = 12589.3 nM PMID[469562]
NPT56 Individual Protein Beta-lactamase AmpC Escherichia coli K-12 Potency = 12589.3 nM PMID[469564]
NPT58 Individual Protein Bloom syndrome protein Homo sapiens Potency = 25118.9 nM PMID[469558]
NPT1416 Individual Protein Neuropeptide S receptor Homo sapiens Potency = 12589.3 nM PMID[469558]
NPT110 Individual Protein Cytochrome P450 2D6 Homo sapiens Potency = 39810.7 nM PMID[469561]
NPT109 Individual Protein Cytochrome P450 3A4 Homo sapiens Potency = 25118.9 nM PMID[469559]
NPT110 Individual Protein Cytochrome P450 2D6 Homo sapiens Potency = 31622.8 nM PMID[469562]
NPT109 Individual Protein Cytochrome P450 3A4 Homo sapiens Potency = 12589.3 nM PMID[469561]
NPT212 Individual Protein Cytochrome P450 2C9 Homo sapiens Potency = 10000.0 nM PMID[469562]
NPT59 Individual Protein DNA polymerase beta Homo sapiens Potency = 35481.3 nM PMID[469558]
NPT212 Individual Protein Cytochrome P450 2C9 Homo sapiens Potency = 2511.9 nM PMID[469561]
NPT61 Individual Protein Beta-glucocerebrosidase Homo sapiens Potency n.a. 39810.7 nM PMID[469564]
NPT242 Individual Protein Dopamine D1 receptor Homo sapiens Potency n.a. 1032.2 nM PMID[469560]
NPT5 Individual Protein Histone-lysine N-methyltransferase, H3 lysine-9 specific 3 Homo sapiens Potency n.a. 39810.7 nM PMID[469560]
NPT5 Individual Protein Histone-lysine N-methyltransferase, H3 lysine-9 specific 3 Homo sapiens Potency n.a. 10000.0 nM PMID[469558]
NPT135 Individual Protein Chromobox protein homolog 1 Homo sapiens Potency n.a. 31622.8 nM PMID[469560]
NPT110 Individual Protein Cytochrome P450 2D6 Homo sapiens AC50 = 39810.72 nM PMID[469561]
NPT212 Individual Protein Cytochrome P450 2C9 Homo sapiens AC50 = 2511.89 nM PMID[469561]
NPT208 Individual Protein Cytochrome P450 1A2 Homo sapiens AC50 = 12589.25 nM PMID[469561]
NPT213 Individual Protein Cytochrome P450 2C19 Homo sapiens AC50 = 10000.0 nM PMID[469561]
NPT109 Individual Protein Cytochrome P450 3A4 Homo sapiens AC50 = 12589.25 nM PMID[469561]
NPT135 Individual Protein Chromobox protein homolog 1 Homo sapiens Potency n.a. 89125.1 nM PMID[469564]
NPT444 Individual Protein Ubiquitin carboxyl-terminal hydrolase 1 Homo sapiens Potency n.a. 56234.1 nM PMID[469560]
NPT10 Individual Protein Geminin Homo sapiens Potency n.a. 6513.1 nM PMID[469564]
NPT10 Individual Protein Geminin Homo sapiens Potency n.a. 23109.3 nM PMID[469564]
NPT50 Individual Protein Tyrosyl-DNA phosphodiesterase 1 Homo sapiens Potency n.a. 26608.6 nM PMID[469567]
NPT50 Individual Protein Tyrosyl-DNA phosphodiesterase 1 Homo sapiens Potency n.a. 29092.9 nM PMID[469564]
NPT50 Individual Protein Tyrosyl-DNA phosphodiesterase 1 Homo sapiens Potency n.a. 23109.3 nM PMID[469564]
NPT446 Individual Protein Rap guanine nucleotide exchange factor 3 Homo sapiens Potency n.a. 112201.8 nM PMID[469564]
NPT472 Individual Protein Vanilloid receptor Homo sapiens Ratio = 1.996 n.a. PMID[469568]
NPT111 Cell Line K562 Homo sapiens IC50 > 50000.0 nM PMID[469568]
NPT165 Cell Line HeLa Homo sapiens IC50 > 50000.0 nM PMID[469568]
NPT83 Cell Line MCF7 Homo sapiens IC50 > 50000.0 nM PMID[469568]
NPT939 Protein Family Vanilloid receptor Rattus norvegicus EC50 = 190.0 nM PMID[469556]
NPT20529 NON-MOLECULAR NON-PROTEIN TARGET n.a. EC50 = 218.0 nM PMID[469557]
NPT20529 NON-MOLECULAR NON-PROTEIN TARGET n.a. EC50 = 41830.0 nM PMID[469557]
NPT2 Others Unspecified Ratio EC50 = 192.0 n.a. PMID[469557]
NPT20529 NON-MOLECULAR NON-PROTEIN TARGET n.a. EC50 = 20.0 nM PMID[469557]
NPT20529 NON-MOLECULAR NON-PROTEIN TARGET n.a. EC50 = 651.0 nM PMID[469557]
NPT20529 NON-MOLECULAR NON-PROTEIN TARGET n.a. EC50 = 3280.0 nM PMID[469557]
NPT20529 NON-MOLECULAR NON-PROTEIN TARGET n.a. EC50 = 88630.0 nM PMID[469557]
NPT20529 NON-MOLECULAR NON-PROTEIN TARGET n.a. EC50 = 21460.0 nM PMID[469557]
NPT20529 NON-MOLECULAR NON-PROTEIN TARGET n.a. Potency = 12589.3 nM PMID[469558]
NPT2 Others Unspecified Potency = 25118.9 nM PMID[469559]
NPT2 Others Unspecified Potency = 15848.9 nM PMID[469558]
NPT312 Organism Saccharomyces cerevisiae Saccharomyces cerevisiae Potency = 18356.4 nM PMID[469560]
NPT20529 NON-MOLECULAR NON-PROTEIN TARGET n.a. Potency = 8912.5 nM PMID[469558]
NPT791 Individual Protein Cruzipain Trypanosoma cruzi Potency = 39810.7 nM PMID[469559]
NPT20529 NON-MOLECULAR NON-PROTEIN TARGET n.a. Potency = 15848.9 nM PMID[469558]
NPT796 Individual Protein Peripheral myelin protein 22 Homo sapiens Potency = 19011.5 nM PMID[469563]
NPT20529 NON-MOLECULAR NON-PROTEIN TARGET n.a. Potency = 17782.8 nM PMID[469558]
NPT197 Protein-Protein Interaction Menin/Histone-lysine N-methyltransferase MLL Homo sapiens Potency = 39810.7 nM PMID[469558]
NPT2 Others Unspecified Potency = 44668.4 nM PMID[469558]
NPT800 Individual Protein M-phase phosphoprotein 8 Homo sapiens Potency n.a. 158.5 nM PMID[469563]
NPT7 Individual Protein Thioredoxin reductase 1, cytoplasmic Rattus norvegicus Potency n.a. 35481.3 nM PMID[469563]
NPT7 Individual Protein Thioredoxin reductase 1, cytoplasmic Rattus norvegicus Potency n.a. 70794.6 nM PMID[469564]
NPT8 Individual Protein DNA polymerase iota Homo sapiens Potency n.a. 22387.2 nM PMID[469558]
NPT98 Individual Protein HERG Homo sapiens Potency n.a. 35481.3 nM PMID[469558]
NPT2 Others Unspecified Potency n.a. 8912.5 nM PMID[469564]
NPT2 Others Unspecified Potency n.a. 6510.4 nM PMID[469563]
NPT2 Others Unspecified Potency n.a. 6510.4 nM PMID[469565]
NPT2 Others Unspecified Potency n.a. 6510.4 nM PMID[469560]
NPT2 Others Unspecified Potency n.a. 6510.4 nM PMID[469559]
NPT2 Others Unspecified Potency n.a. 6510.4 nM PMID[469564]
NPT2 Others Unspecified Potency n.a. 35481.3 nM PMID[469558]
NPT2 Others Unspecified Potency n.a. 6510.4 nM PMID[469561]
NPT2 Others Unspecified Potency n.a. 6510.4 nM PMID[469562]
NPT7 Individual Protein Thioredoxin reductase 1, cytoplasmic Rattus norvegicus Potency n.a. 17782.8 nM PMID[469560]
NPT755 Individual Protein Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 Homo sapiens Potency n.a. 79432.8 nM PMID[469564]
NPT2 Others Unspecified Potency n.a. 5623.4 nM PMID[469560]

☑ Note for Activity Records:
☉ The quantitative biological activities were primarily integrated from ChEMBL (Version-30) database and were also directly collected from PubMed literature. PubMed PMID was provided as the reference link for each activity record.

  Chemically structural similarity: I. Similar Active Natural Products in NPASS

Top-200 similar NPs were calculated against the active-NP-set (includes 4,3285 NPs with experimentally-derived bioactivity available in NPASS)

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules. Tc lies between [0, 1] where '1' indicates the highest similarity. What is Tanimoto coefficient

●  The left chart: Distribution of similarity level between NPC218530 and all remaining natural products in the NPASS database.
●  The right table: Most similar natural products (Tc>=0.56 or Top200).

Similarity Score Similarity Level Natural Product ID
0.9841 High Similarity NPC93882
0.9841 High Similarity NPC130595
0.9764 High Similarity NPC6854
0.9764 High Similarity NPC285078
0.9764 High Similarity NPC313737
0.9762 High Similarity NPC255550
0.9762 High Similarity NPC308885
0.937 High Similarity NPC153990
0.9154 High Similarity NPC114102
0.9084 High Similarity NPC214869
0.9 High Similarity NPC155838
0.8931 High Similarity NPC52029
0.8931 High Similarity NPC35961
0.8931 High Similarity NPC195749
0.8846 High Similarity NPC301713
0.8811 High Similarity NPC275027
0.8779 High Similarity NPC251571
0.874 High Similarity NPC289330
0.874 High Similarity NPC53596
0.874 High Similarity NPC471308
0.874 High Similarity NPC160120
0.874 High Similarity NPC17388
0.8682 High Similarity NPC471315
0.8682 High Similarity NPC471314
0.8636 High Similarity NPC186898
0.8615 High Similarity NPC13020
0.8615 High Similarity NPC140359
0.8613 High Similarity NPC160607
0.8613 High Similarity NPC41473
0.8613 High Similarity NPC204848
0.8613 High Similarity NPC312770
0.8613 High Similarity NPC14600
0.8551 High Similarity NPC299583
0.8496 Intermediate Similarity NPC191302
0.8483 Intermediate Similarity NPC52475
0.8433 Intermediate Similarity NPC246974
0.8433 Intermediate Similarity NPC147247
0.8425 Intermediate Similarity NPC18614
0.8417 Intermediate Similarity NPC296898
0.8413 Intermediate Similarity NPC142599
0.8406 Intermediate Similarity NPC131204
0.8406 Intermediate Similarity NPC301050
0.8358 Intermediate Similarity NPC157740
0.8358 Intermediate Similarity NPC99798
0.8333 Intermediate Similarity NPC321505
0.8333 Intermediate Similarity NPC191376
0.8333 Intermediate Similarity NPC179825
0.8322 Intermediate Similarity NPC5462
0.8284 Intermediate Similarity NPC251466
0.8284 Intermediate Similarity NPC156944
0.8276 Intermediate Similarity NPC476571
0.8276 Intermediate Similarity NPC246587
0.8276 Intermediate Similarity NPC147390
0.8276 Intermediate Similarity NPC428
0.8276 Intermediate Similarity NPC135538
0.8276 Intermediate Similarity NPC24233
0.8267 Intermediate Similarity NPC329837
0.8239 Intermediate Similarity NPC100478
0.8239 Intermediate Similarity NPC222039
0.8231 Intermediate Similarity NPC268572
0.8231 Intermediate Similarity NPC281298
0.8231 Intermediate Similarity NPC310338
0.8222 Intermediate Similarity NPC291449
0.8222 Intermediate Similarity NPC41331
0.8222 Intermediate Similarity NPC172403
0.8219 Intermediate Similarity NPC103379
0.8219 Intermediate Similarity NPC477565
0.8217 Intermediate Similarity NPC164386
0.8209 Intermediate Similarity NPC152186
0.8209 Intermediate Similarity NPC182147
0.8209 Intermediate Similarity NPC207541
0.8209 Intermediate Similarity NPC170583
0.8209 Intermediate Similarity NPC246133
0.8209 Intermediate Similarity NPC71105
0.8207 Intermediate Similarity NPC277857
0.8207 Intermediate Similarity NPC115144
0.8194 Intermediate Similarity NPC185838
0.8175 Intermediate Similarity NPC329595
0.8175 Intermediate Similarity NPC173746
0.8175 Intermediate Similarity NPC8547
0.8175 Intermediate Similarity NPC156840
0.8175 Intermediate Similarity NPC257124
0.8175 Intermediate Similarity NPC326599
0.8168 Intermediate Similarity NPC117780
0.8168 Intermediate Similarity NPC232316
0.8168 Intermediate Similarity NPC56214
0.8168 Intermediate Similarity NPC95614
0.8168 Intermediate Similarity NPC227217
0.8168 Intermediate Similarity NPC165133
0.8168 Intermediate Similarity NPC242885
0.8154 Intermediate Similarity NPC470626
0.8134 Intermediate Similarity NPC300955
0.8108 Intermediate Similarity NPC76213
0.8108 Intermediate Similarity NPC277669
0.8092 Intermediate Similarity NPC311595
0.8092 Intermediate Similarity NPC24474
0.8092 Intermediate Similarity NPC43275
0.8085 Intermediate Similarity NPC193528
0.8082 Intermediate Similarity NPC476151
0.8077 Intermediate Similarity NPC293619
0.8077 Intermediate Similarity NPC283468
0.8077 Intermediate Similarity NPC120075
0.8054 Intermediate Similarity NPC133011
0.8054 Intermediate Similarity NPC82285
0.8045 Intermediate Similarity NPC38996
0.8045 Intermediate Similarity NPC160380
0.8041 Intermediate Similarity NPC220858
0.8041 Intermediate Similarity NPC97221
0.8041 Intermediate Similarity NPC88249
0.8041 Intermediate Similarity NPC192768
0.8041 Intermediate Similarity NPC151895
0.8031 Intermediate Similarity NPC166837
0.8028 Intermediate Similarity NPC231572
0.8027 Intermediate Similarity NPC471032
0.8027 Intermediate Similarity NPC470935
0.8016 Intermediate Similarity NPC246358
0.8016 Intermediate Similarity NPC36108
0.8016 Intermediate Similarity NPC233731
0.8016 Intermediate Similarity NPC7097
0.8015 Intermediate Similarity NPC122009
0.8013 Intermediate Similarity NPC66573
0.8 Intermediate Similarity NPC477564
0.8 Intermediate Similarity NPC294249
0.8 Intermediate Similarity NPC2295
0.7987 Intermediate Similarity NPC127402
0.7985 Intermediate Similarity NPC298486
0.7985 Intermediate Similarity NPC85488
0.7973 Intermediate Similarity NPC207824
0.7973 Intermediate Similarity NPC60538
0.7972 Intermediate Similarity NPC477837
0.7972 Intermediate Similarity NPC477838
0.7971 Intermediate Similarity NPC160193
0.7971 Intermediate Similarity NPC470706
0.797 Intermediate Similarity NPC207613
0.7958 Intermediate Similarity NPC254610
0.7953 Intermediate Similarity NPC474149
0.7947 Intermediate Similarity NPC5238
0.7947 Intermediate Similarity NPC39701
0.7947 Intermediate Similarity NPC469817
0.7947 Intermediate Similarity NPC295691
0.7947 Intermediate Similarity NPC110416
0.7947 Intermediate Similarity NPC278799
0.7947 Intermediate Similarity NPC184026
0.7947 Intermediate Similarity NPC172765
0.7947 Intermediate Similarity NPC193949
0.7947 Intermediate Similarity NPC189266
0.7947 Intermediate Similarity NPC2413
0.7947 Intermediate Similarity NPC127674
0.7947 Intermediate Similarity NPC54379
0.7947 Intermediate Similarity NPC207757
0.7947 Intermediate Similarity NPC204828
0.7947 Intermediate Similarity NPC249797
0.7947 Intermediate Similarity NPC276588
0.7926 Intermediate Similarity NPC280704
0.7926 Intermediate Similarity NPC31344
0.7926 Intermediate Similarity NPC317769
0.7917 Intermediate Similarity NPC275150
0.791 Intermediate Similarity NPC324571
0.791 Intermediate Similarity NPC476343
0.791 Intermediate Similarity NPC262156
0.791 Intermediate Similarity NPC113865
0.791 Intermediate Similarity NPC201777
0.791 Intermediate Similarity NPC343720
0.791 Intermediate Similarity NPC312675
0.791 Intermediate Similarity NPC473853
0.791 Intermediate Similarity NPC470212
0.791 Intermediate Similarity NPC184651
0.791 Intermediate Similarity NPC54872
0.7905 Intermediate Similarity NPC153644
0.7899 Intermediate Similarity NPC469977
0.7895 Intermediate Similarity NPC147091
0.7891 Intermediate Similarity NPC139617
0.7891 Intermediate Similarity NPC195873
0.7891 Intermediate Similarity NPC78918
0.7863 Intermediate Similarity NPC221049
0.7847 Intermediate Similarity NPC314682
0.7836 Intermediate Similarity NPC183262
0.7832 Intermediate Similarity NPC471316
0.7829 Intermediate Similarity NPC107602
0.7812 Intermediate Similarity NPC137685
0.781 Intermediate Similarity NPC266705
0.781 Intermediate Similarity NPC29008
0.781 Intermediate Similarity NPC148627
0.781 Intermediate Similarity NPC9067
0.781 Intermediate Similarity NPC228771
0.7803 Intermediate Similarity NPC86947
0.78 Intermediate Similarity NPC274026
0.78 Intermediate Similarity NPC478189
0.7799 Intermediate Similarity NPC231371
0.7794 Intermediate Similarity NPC471693
0.7794 Intermediate Similarity NPC163083
0.7793 Intermediate Similarity NPC474915
0.7793 Intermediate Similarity NPC328750
0.7793 Intermediate Similarity NPC213206
0.7793 Intermediate Similarity NPC188163
0.7786 Intermediate Similarity NPC476570
0.7778 Intermediate Similarity NPC231705
0.7778 Intermediate Similarity NPC211992
0.7778 Intermediate Similarity NPC127389
0.7778 Intermediate Similarity NPC37205

  Chemically structural similarity: II. Similar Clinical/Approved Drugs

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules.

●  The left chart: Distribution of similarity level between NPC218530 and all drugs/candidates.
●  The right table: Most similar clinical/approved drugs (Tc>=0.56 or Top200).

Similarity Score Similarity Level Drug ID Developmental Stage
0.9841 High Similarity NPD2674 Phase 3
0.9762 High Similarity NPD3144 Approved
0.9762 High Similarity NPD3145 Approved
0.8696 High Similarity NPD7153 Discontinued
0.8686 High Similarity NPD2161 Phase 2
0.831 Intermediate Similarity NPD6331 Phase 2
0.8175 Intermediate Similarity NPD228 Approved
0.8082 Intermediate Similarity NPD4123 Phase 3
0.806 Intermediate Similarity NPD3676 Clinical (unspecified phase)
0.7926 Intermediate Similarity NPD1669 Approved
0.7905 Intermediate Similarity NPD7527 Clinical (unspecified phase)
0.7905 Intermediate Similarity NPD52 Approved
0.7905 Intermediate Similarity NPD7526 Approved
0.7852 Intermediate Similarity NPD2337 Clinical (unspecified phase)
0.7838 Intermediate Similarity NPD4739 Approved
0.7815 Intermediate Similarity NPD4675 Approved
0.7815 Intermediate Similarity NPD4678 Approved
0.7808 Intermediate Similarity NPD6658 Clinical (unspecified phase)
0.7793 Intermediate Similarity NPD4664 Clinical (unspecified phase)
0.777 Intermediate Similarity NPD5752 Clinical (unspecified phase)
0.7761 Intermediate Similarity NPD2668 Approved
0.7761 Intermediate Similarity NPD2667 Approved
0.7756 Intermediate Similarity NPD7201 Clinical (unspecified phase)
0.774 Intermediate Similarity NPD3060 Approved
0.7724 Intermediate Similarity NPD1375 Discontinued
0.7718 Intermediate Similarity NPD1754 Clinical (unspecified phase)
0.7698 Intermediate Similarity NPD1712 Approved
0.7692 Intermediate Similarity NPD2157 Approved
0.7692 Intermediate Similarity NPD9379 Approved
0.7692 Intermediate Similarity NPD9377 Approved
0.7667 Intermediate Similarity NPD5261 Clinical (unspecified phase)
0.766 Intermediate Similarity NPD5718 Phase 2
0.7639 Intermediate Similarity NPD6896 Approved
0.7639 Intermediate Similarity NPD6895 Approved
0.7634 Intermediate Similarity NPD5283 Phase 1
0.7632 Intermediate Similarity NPD824 Approved
0.7628 Intermediate Similarity NPD7831 Phase 2
0.7628 Intermediate Similarity NPD4055 Discovery
0.7628 Intermediate Similarity NPD7833 Phase 2
0.7628 Intermediate Similarity NPD7832 Clinical (unspecified phase)
0.7619 Intermediate Similarity NPD5177 Phase 3
0.761 Intermediate Similarity NPD4083 Discontinued
0.7609 Intermediate Similarity NPD2922 Phase 1
0.7606 Intermediate Similarity NPD839 Approved
0.7606 Intermediate Similarity NPD840 Approved
0.7606 Intermediate Similarity NPD7477 Discontinued
0.7591 Intermediate Similarity NPD2232 Approved
0.7591 Intermediate Similarity NPD2233 Approved
0.7591 Intermediate Similarity NPD2230 Approved
0.7589 Intermediate Similarity NPD2669 Clinical (unspecified phase)
0.7552 Intermediate Similarity NPD1558 Phase 1
0.7548 Intermediate Similarity NPD5773 Approved
0.7548 Intermediate Similarity NPD5772 Approved
0.7535 Intermediate Similarity NPD5109 Approved
0.7535 Intermediate Similarity NPD5111 Phase 2
0.7535 Intermediate Similarity NPD5110 Phase 2
0.7532 Intermediate Similarity NPD4772 Phase 2
0.7532 Intermediate Similarity NPD4773 Phase 2
0.7517 Intermediate Similarity NPD5241 Discontinued
0.7516 Intermediate Similarity NPD4005 Discontinued
0.7516 Intermediate Similarity NPD7975 Clinical (unspecified phase)
0.75 Intermediate Similarity NPD2560 Approved
0.75 Intermediate Similarity NPD4162 Approved
0.75 Intermediate Similarity NPD2563 Approved
0.7483 Intermediate Similarity NPD3656 Approved
0.7483 Intermediate Similarity NPD4584 Approved
0.7466 Intermediate Similarity NPD6028 Clinical (unspecified phase)
0.7466 Intermediate Similarity NPD6029 Clinical (unspecified phase)
0.7465 Intermediate Similarity NPD3027 Phase 3
0.7453 Intermediate Similarity NPD2898 Approved
0.7448 Intermediate Similarity NPD2653 Approved
0.7438 Intermediate Similarity NPD4010 Discontinued
0.7436 Intermediate Similarity NPD6818 Clinical (unspecified phase)
0.7429 Intermediate Similarity NPD3053 Approved
0.7429 Intermediate Similarity NPD3055 Approved
0.7424 Intermediate Similarity NPD821 Approved
0.741 Intermediate Similarity NPD4379 Clinical (unspecified phase)
0.7407 Intermediate Similarity NPD5602 Clinical (unspecified phase)
0.7405 Intermediate Similarity NPD5604 Discontinued
0.7386 Intermediate Similarity NPD2122 Discontinued
0.7386 Intermediate Similarity NPD3641 Approved
0.7386 Intermediate Similarity NPD3640 Phase 3
0.7386 Intermediate Similarity NPD3639 Approved
0.7376 Intermediate Similarity NPD6584 Phase 3
0.7372 Intermediate Similarity NPD9381 Approved
0.7372 Intermediate Similarity NPD9384 Approved
0.7361 Intermediate Similarity NPD554 Clinical (unspecified phase)
0.7361 Intermediate Similarity NPD1726 Clinical (unspecified phase)
0.7357 Intermediate Similarity NPD5311 Approved
0.7357 Intermediate Similarity NPD5310 Approved
0.7347 Intermediate Similarity NPD4108 Discontinued
0.7343 Intermediate Similarity NPD1024 Discontinued
0.7328 Intermediate Similarity NPD3021 Approved
0.7328 Intermediate Similarity NPD3022 Approved
0.7325 Intermediate Similarity NPD2978 Approved
0.7325 Intermediate Similarity NPD2977 Approved
0.7315 Intermediate Similarity NPD3655 Clinical (unspecified phase)
0.7315 Intermediate Similarity NPD1044 Clinical (unspecified phase)
0.731 Intermediate Similarity NPD2238 Phase 2
0.731 Intermediate Similarity NPD3619 Clinical (unspecified phase)
0.731 Intermediate Similarity NPD3620 Phase 2
0.731 Intermediate Similarity NPD5837 Clinical (unspecified phase)
0.7308 Intermediate Similarity NPD5090 Approved
0.7308 Intermediate Similarity NPD5089 Approved
0.7303 Intermediate Similarity NPD4357 Discontinued
0.7292 Intermediate Similarity NPD2028 Clinical (unspecified phase)
0.729 Intermediate Similarity NPD7261 Clinical (unspecified phase)
0.729 Intermediate Similarity NPD4017 Approved
0.7286 Intermediate Similarity NPD3685 Discontinued
0.7286 Intermediate Similarity NPD9622 Approved
0.7285 Intermediate Similarity NPD5307 Clinical (unspecified phase)
0.7285 Intermediate Similarity NPD2219 Phase 1
0.7279 Intermediate Similarity NPD6111 Discontinued
0.7273 Intermediate Similarity NPD6031 Approved
0.7273 Intermediate Similarity NPD6030 Approved
0.7267 Intermediate Similarity NPD4237 Approved
0.7267 Intermediate Similarity NPD4236 Phase 3
0.7261 Intermediate Similarity NPD7945 Clinical (unspecified phase)
0.7261 Intermediate Similarity NPD5720 Discontinued
0.7255 Intermediate Similarity NPD1771 Clinical (unspecified phase)
0.7254 Intermediate Similarity NPD9621 Approved
0.7254 Intermediate Similarity NPD9619 Approved
0.7254 Intermediate Similarity NPD9620 Approved
0.7252 Intermediate Similarity NPD2684 Approved
0.7248 Intermediate Similarity NPD2029 Clinical (unspecified phase)
0.7244 Intermediate Similarity NPD5617 Suspended
0.7239 Intermediate Similarity NPD2489 Approved
0.7239 Intermediate Similarity NPD2234 Approved
0.7239 Intermediate Similarity NPD2228 Approved
0.7239 Intermediate Similarity NPD2229 Approved
0.7239 Intermediate Similarity NPD27 Approved
0.7237 Intermediate Similarity NPD7124 Phase 2
0.7234 Intermediate Similarity NPD9634 Clinical (unspecified phase)
0.7231 Intermediate Similarity NPD1445 Approved
0.7231 Intermediate Similarity NPD1444 Approved
0.7226 Intermediate Similarity NPD3686 Approved
0.7226 Intermediate Similarity NPD2883 Discontinued
0.7226 Intermediate Similarity NPD3687 Approved
0.7222 Intermediate Similarity NPD6071 Discontinued
0.7215 Intermediate Similarity NPD5563 Clinical (unspecified phase)
0.7214 Intermediate Similarity NPD2235 Phase 2
0.7214 Intermediate Similarity NPD2231 Phase 2
0.7181 Intermediate Similarity NPD1632 Clinical (unspecified phase)
0.7174 Intermediate Similarity NPD1357 Approved
0.7172 Intermediate Similarity NPD1039 Discontinued
0.7172 Intermediate Similarity NPD598 Approved
0.7172 Intermediate Similarity NPD601 Approved
0.7172 Intermediate Similarity NPD597 Approved
0.7171 Intermediate Similarity NPD5084 Clinical (unspecified phase)
0.7171 Intermediate Similarity NPD3692 Discontinued
0.7163 Intermediate Similarity NPD1421 Approved
0.7163 Intermediate Similarity NPD6582 Phase 2
0.7163 Intermediate Similarity NPD1420 Approved
0.7163 Intermediate Similarity NPD6583 Phase 3
0.7153 Intermediate Similarity NPD600 Approved
0.7153 Intermediate Similarity NPD596 Approved
0.7152 Intermediate Similarity NPD2458 Approved
0.7152 Intermediate Similarity NPD2459 Approved
0.7152 Intermediate Similarity NPD7298 Approved
0.7152 Intermediate Similarity NPD2460 Phase 3
0.7143 Intermediate Similarity NPD1424 Approved
0.7134 Intermediate Similarity NPD6502 Phase 2
0.7124 Intermediate Similarity NPD6783 Clinical (unspecified phase)
0.7123 Intermediate Similarity NPD1136 Approved
0.7123 Intermediate Similarity NPD1423 Approved
0.7123 Intermediate Similarity NPD1130 Approved
0.7123 Intermediate Similarity NPD1132 Approved
0.7117 Intermediate Similarity NPD4606 Clinical (unspecified phase)
0.7114 Intermediate Similarity NPD3693 Clinical (unspecified phase)
0.7095 Intermediate Similarity NPD1772 Clinical (unspecified phase)
0.7086 Intermediate Similarity NPD7596 Clinical (unspecified phase)
0.7075 Intermediate Similarity NPD3061 Approved
0.7075 Intermediate Similarity NPD3059 Approved
0.7075 Intermediate Similarity NPD3062 Approved
0.7073 Intermediate Similarity NPD2969 Approved
0.7073 Intermediate Similarity NPD2970 Approved
0.7068 Intermediate Similarity NPD1792 Phase 2
0.7059 Intermediate Similarity NPD8054 Approved
0.7059 Intermediate Similarity NPD302 Approved
0.7059 Intermediate Similarity NPD8053 Approved
0.7055 Intermediate Similarity NPD2821 Approved
0.705 Intermediate Similarity NPD4093 Discontinued
0.7041 Intermediate Similarity NPD7132 Clinical (unspecified phase)
0.7037 Intermediate Similarity NPD7843 Approved
0.7032 Intermediate Similarity NPD4160 Clinical (unspecified phase)
0.7032 Intermediate Similarity NPD2874 Phase 2
0.703 Intermediate Similarity NPD677 Clinical (unspecified phase)
0.7025 Intermediate Similarity NPD3296 Phase 1
0.7019 Intermediate Similarity NPD6788 Approved
0.7015 Intermediate Similarity NPD9280 Clinical (unspecified phase)
0.7014 Intermediate Similarity NPD7905 Discontinued
0.7013 Intermediate Similarity NPD2422 Clinical (unspecified phase)
0.7013 Intermediate Similarity NPD3845 Phase 1
0.7012 Intermediate Similarity NPD3051 Approved
0.7007 Intermediate Similarity NPD7157 Approved
0.7007 Intermediate Similarity NPD259 Phase 1
0.7006 Intermediate Similarity NPD950 Clinical (unspecified phase)
0.7006 Intermediate Similarity NPD4210 Discontinued
0.7006 Intermediate Similarity NPD4003 Phase 3
0.6993 Remote Similarity NPD7258 Clinical (unspecified phase)

  Bioactivity similarity: Similar Natural Products in NPASS

Bioactivity similarity was calculated based on bioactivity descriptors of compounds. The bioactivity descriptors were calculated by a recently developed AI algorithm Chemical Checker (CC) [Nature Biotechnology, 38:1087–1096, 2020; Nature Communications, 12:3932, 2021], which evaluated bioactivity similarities at five levels:
A: chemistry similarity;
B: biological targets similarity;
C: networks similarity;
D: cell-based bioactivity similarity;
E: similarity based on clinical data.

Those 5 categories of CC bioactivity descriptors were calculated and then subjected to manifold projection using UMAP algorithm, to project all NPs on a 2-Dimensional space. The current NP was highlighted with a small circle in the 2-D map. Below figures: left-to-right, A-to-E.

A: chemistry similarity
B: biological targets similarity
C: networks similarity
D: cell-based bioactivity similarity
E: similarity based on clinical data