Structure

Physi-Chem Properties

Molecular Weight:  465.23
Volume:  465.4
LogP:  3.911
LogD:  3.007
LogS:  -4.183
# Rotatable Bonds:  2
TPSA:  102.34
# H-Bond Aceptor:  8
# H-Bond Donor:  3
# Rings:  6
# Heavy Atoms:  8

MedChem Properties

QED Drug-Likeness Score:  0.58
Synthetic Accessibility Score:  5.03
Fsp3:  0.538
Lipinski Rule-of-5:  Accepted
Pfizer Rule:  Accepted
GSK Rule:  Rejected
BMS Rule:  0
Golden Triangle Rule:  Accepted
Chelating Alert:  0
PAINS Alert:  0

ADMET Properties (ADMETlab2.0)

ADMET: Absorption

Caco-2 Permeability:  -4.98
MDCK Permeability:  2.0980207409593277e-05
Pgp-inhibitor:  0.996
Pgp-substrate:  0.001
Human Intestinal Absorption (HIA):  0.116
20% Bioavailability (F20%):  0.736
30% Bioavailability (F30%):  0.916

ADMET: Distribution

Blood-Brain-Barrier Penetration (BBB):  0.522
Plasma Protein Binding (PPB):  90.13101196289062%
Volume Distribution (VD):  1.372
Pgp-substrate:  5.244330883026123%

ADMET: Metabolism

CYP1A2-inhibitor:  0.015
CYP1A2-substrate:  0.084
CYP2C19-inhibitor:  0.767
CYP2C19-substrate:  0.848
CYP2C9-inhibitor:  0.935
CYP2C9-substrate:  0.375
CYP2D6-inhibitor:  0.196
CYP2D6-substrate:  0.117
CYP3A4-inhibitor:  0.971
CYP3A4-substrate:  0.962

ADMET: Excretion

Clearance (CL):  6.232
Half-life (T1/2):  0.078

ADMET: Toxicity

hERG Blockers:  0.001
Human Hepatotoxicity (H-HT):  0.53
Drug-inuced Liver Injury (DILI):  0.98
AMES Toxicity:  0.002
Rat Oral Acute Toxicity:  0.371
Maximum Recommended Daily Dose:  0.938
Skin Sensitization:  0.383
Carcinogencity:  0.959
Eye Corrosion:  0.003
Eye Irritation:  0.008
Respiratory Toxicity:  0.704

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Similar NPs/Drugs  

  Natural Product: NPC219397

Natural Product ID:  NPC219397
Common Name*:   Notoamide K
IUPAC Name:   n.a.
Synonyms:   Notoamide K
Standard InCHIKey:  YDQXTEHATGRQDU-RRGUOAIQSA-N
Standard InCHI:  InChI=1S/C26H31N3O5/c1-6-22(2,3)26-24(32,14-25(33)21(31)28-13-7-8-17(28)20(30)29(25)26)16-9-10-18-15(19(16)27-26)11-12-23(4,5)34-18/h6,9-12,17,27,32-33H,1,7-8,13-14H2,2-5H3/t17-,24+,25-,26-/m0/s1
SMILES:  C=CC([C@]12Nc3c([C@]2(O)C[C@]2(N1C(=O)[C@@H]1CCCN1C2=O)O)ccc1c3C=CC(O1)(C)C)(C)C
Synthetic Gene Cluster:   n.a.
ChEMBL Identifier:   CHEMBL460140
PubChem CID:   25180896
Chemical Classification**:  
  • CHEMONTID:0000000 [Organic compounds]
    • [CHEMONTID:0000002] Organoheterocyclic compounds
      • [CHEMONTID:0000211] Indoles and derivatives
        • [CHEMONTID:0001733] Pyrroloindoles

*Note: the InCHIKey will be temporarily assigned as the "Common Name" if no IUPAC name or alternative short name is available.
**Note: the Chemical Classification was calculated by NPClassifier Version 1.5. Reference: PMID:34662515.

  Species Source

Organism ID Organism Name Taxonomy Level Family SuperKingdom Isolation Part Collection Location Collection Time Reference
NPO21005 Baphia nitida Species Fabaceae Eukaryota n.a. n.a. n.a. DOI[10.1016/0031-9422(92)80059-N]
NPO20931 Simaba multiflora Species Simaroubaceae Eukaryota n.a. xylem n.a. DOI[10.1016/S0040-4039(00)86970-1]
NPO4343 Guanomyces polythrix Species n.a. Eukaryota n.a. n.a. n.a. PMID[10869195]
NPO31572 Aspergillus sp. Species Aspergillaceae Eukaryota rhizosphere Sonoran desert n.a. PMID[15620238]
NPO17256 Kobresia nepalensis Species Cyperaceae Eukaryota n.a. stem n.a. PMID[16508191]
NPO20931 Simaba multiflora Species Simaroubaceae Eukaryota n.a. n.a. n.a. PMID[17340534]
NPO31572 Aspergillus sp. Species Aspergillaceae Eukaryota n.a. n.a. n.a. PMID[17542490]
NPO31572 Aspergillus sp. Species Aspergillaceae Eukaryota n.a. n.a. n.a. PMID[17564467]
NPO31572 Aspergillus sp. Species Aspergillaceae Eukaryota n.a. n.a. n.a. PMID[19053517]
NPO31572 Aspergillus sp. Species Aspergillaceae Eukaryota n.a. n.a. n.a. PMID[21366228]
NPO19192 Sinocalamus affinis Species n.a. n.a. skin-removed stems Pingle Town, Sichuang Province, China 2008-AUG PMID[21469695]
NPO19192 Sinocalamus affinis Species n.a. n.a. n.a. stem n.a. PMID[21469695]
NPO31572 Aspergillus sp. Species Aspergillaceae Eukaryota n.a. n.a. n.a. PMID[21718031]
NPO31572 Aspergillus sp. Species Aspergillaceae Eukaryota n.a. n.a. n.a. PMID[21854017]
NPO31572 Aspergillus sp. Species Aspergillaceae Eukaryota healthy leaf of Ginkgo biloba campus of Nanjing University, Nanjing, China 2008-OCT PMID[22196792]
NPO31572 Aspergillus sp. Species Aspergillaceae Eukaryota isolated from the sponge Xestospongia testudinaria n.a. n.a. PMID[22225637]
NPO31572 Aspergillus sp. Species Aspergillaceae Eukaryota Isolated from a sandy-loam soil sample 50 m inland from Waikiki Beach, Honolulu, Hawaii 2010-JUL PMID[22400916]
NPO19192 Sinocalamus affinis Species n.a. n.a. n.a. n.a. n.a. PMID[22690646]
NPO31572 Aspergillus sp. Species Aspergillaceae Eukaryota n.a. n.a. n.a. PMID[22703109]
NPO19901 Emilia sonchifolia Species Asteraceae Eukaryota n.a. aerial part n.a. PMID[23397723]
NPO31572 Aspergillus sp. Species Aspergillaceae Eukaryota n.a. n.a. n.a. PMID[23527875]
NPO31572 Aspergillus sp. Species Aspergillaceae Eukaryota n.a. n.a. n.a. PMID[24050204]
NPO31572 Aspergillus sp. Species Aspergillaceae Eukaryota n.a. n.a. n.a. PMID[25001296]
NPO31572 Aspergillus sp. Species Aspergillaceae Eukaryota n.a. n.a. n.a. PMID[25581396]
NPO20739 Jungermannia hyalina Species Jungermanniaceae Eukaryota n.a. Guangxi Zhuang Autonomous Region, China n.a. PMID[25856683]
NPO31572 Aspergillus sp. Species Aspergillaceae Eukaryota n.a. n.a. n.a. PMID[26273902]
NPO21618 Ircinia oros Species Irciniidae Eukaryota n.a. n.a. n.a. PMID[28840725]
NPO31572 Aspergillus sp. Species Aspergillaceae Eukaryota n.a. n.a. n.a. PMID[31012585]
NPO21679 Nuphar lutea Species Nymphaeaceae Eukaryota n.a. n.a. n.a. PMID[31182315]
NPO20212 Callistemon viminalis Species Myrtaceae Eukaryota n.a. n.a. n.a. PMID[31276403]
NPO31572 Aspergillus sp. Species Aspergillaceae Eukaryota n.a. n.a. n.a. PMID[33305943]
NPO20931 Simaba multiflora Species Simaroubaceae Eukaryota Fruits n.a. n.a. PMID[3760884]
NPO20931 Simaba multiflora Species Simaroubaceae Eukaryota n.a. n.a. n.a. PMID[6736970]
NPO20931 Simaba multiflora Species Simaroubaceae Eukaryota n.a. n.a. n.a. PMID[6875576]
NPO20931 Simaba multiflora Species Simaroubaceae Eukaryota n.a. n.a. n.a. PMID[6875577]
NPO20931 Simaba multiflora Species Simaroubaceae Eukaryota n.a. xylem n.a. PMID[6875577]
NPO20671 Selliguea feei Species Polypodiaceae Eukaryota Rhizomes n.a. n.a. PMID[8254348]
NPO21679 Nuphar lutea Species Nymphaeaceae Eukaryota n.a. n.a. Database[FooDB]
NPO19901 Emilia sonchifolia Species Asteraceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO8650.1 Perilla frutescens var. arguta Varieties Lamiaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO19488 Trifolium subterraneum Species Fabaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO19017 Prangos pabularia Species Apiaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO17256 Kobresia nepalensis Species Cyperaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO21679 Nuphar lutea Species Nymphaeaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO8650.1 Perilla frutescens var. arguta Varieties Lamiaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO19488 Trifolium subterraneum Species Fabaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO19901 Emilia sonchifolia Species Asteraceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO19017 Prangos pabularia Species Apiaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO11966 Euphorbia kamerunica Species Euphorbiaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO8678 Trillium camschatcense Species Melanthiaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO19017 Prangos pabularia Species Apiaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO19901 Emilia sonchifolia Species Asteraceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO19773 Xenorhabdus bovienii Species Morganellaceae Bacteria n.a. n.a. n.a. Database[UNPD]
NPO13260 Eria foetida Species Orchidaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO21550 Achillea macrophylla Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO21005 Baphia nitida Species Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO20340 Pausinystalia mayumbensis Species Rubiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO8678 Trillium camschatcense Species Melanthiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO20739 Jungermannia hyalina Species Jungermanniaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO21426 Alstroemeria revoluta Species Alstroemeriaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO14466 Penicillium olsonii Species Aspergillaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO20872 Melampodium heterophyllum Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO17256 Kobresia nepalensis Species Cyperaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO18096 Excoecaria oppositifolia Species Euphorbiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO20546 Cissus pallidiflorus Species Vitaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO21486 Marrubium alysson Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO22510 Eupatorium havanense Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO21231 Astragalus tragacantha Species Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO26840 Litsea aciculata Species Lauraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO21289 Teucrium oxylepis Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO19622 Euphorbia marginata Species Euphorbiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO19901 Emilia sonchifolia Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO8650.1 Perilla frutescens var. arguta Varieties Lamiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO20931 Simaba multiflora Species Simaroubaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO21088 Litsea pulchella Species Lauraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO19192 Sinocalamus affinis Species n.a. n.a. n.a. n.a. n.a. Database[UNPD]
NPO20051 Gardenia collinsae Species Rubiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO20671 Selliguea feei Species Polypodiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO20813 Myrmica sabuleti Species Formicidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO2854 Gymnosporia senegalensis Species Celastraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO21365 Ligularia muliensis Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO21679 Nuphar lutea Species Nymphaeaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO17515 Pronephrium triphyllum Species Thelypteridaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO3777 Stevia chamaedrys Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO11622.1 Shuteria involucrata var. vestita Varieties Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO20212 Callistemon viminalis Species Myrtaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO19986 Crataegus davisii Species Rosaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO16907 Pentzia incana Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO19017 Prangos pabularia Species Apiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO21618 Ircinia oros Species Irciniidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO14136 Acherontia atropus Species Sphingidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO3237 Mytilus edulis Species Mytilidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO4343 Guanomyces polythrix Species n.a. Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO18620 Grindelia acutifolia Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO15216 Encephalartos altensteinii Species Zamiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO16454 Crinum erubescens Species Amaryllidaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO20612 Ursinia abrotanifolia Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO14330 Agave aurea Species Asparagaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO20408 Ajuga spectabilis Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO16044 Cupressus lawsoniana Species Cupressaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO19488 Trifolium subterraneum Species Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO11966 Euphorbia kamerunica Species Euphorbiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]

☑ Note for Reference:
In addition to directly collecting NP source organism data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated them from below databases:
UNPD: Universal Natural Products Database [PMID: 23638153].
StreptomeDB: a database of streptomycetes natural products [PMID: 33051671].
TM-MC: a database of medicinal materials and chemical compounds in Northeast Asian traditional medicine [PMID: 26156871].
TCM@Taiwan: a Traditional Chinese Medicine database [PMID: 21253603].
TCMID: a Traditional Chinese Medicine database [PMID: 29106634].
TCMSP: The traditional Chinese medicine systems pharmacology database and analysis platform [PMID: 24735618].
HerDing: a herb recommendation system to treat diseases using genes and chemicals [PMID: 26980517].
MetaboLights: a metabolomics database [PMID: 27010336].
FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].

  NP Quantity Composition/Concentration

Organism ID NP ID Organism Material Preparation Organism Part NP Quantity (Standard) NP Quantity (Minimum) NP Quantity (Maximum) Quantity Unit Reference

☑ Note for Reference:
In addition to directly collecting NP quantitative data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated NP quantitative records for specific NP domains (e.g., NPS from foods or herbs) from domain-specific databases. These databases include:
DUKE: Dr. Duke's Phytochemical and Ethnobotanical Databases.
PHENOL EXPLORER: is the first comprehensive database on polyphenol content in foods [PMID: 24103452], its homepage can be accessed at here.
FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].

  Biological Activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference
NPT165 Cell Line HeLa Homo sapiens IC50 > 50.0 ug.mL-1 PMID[511231]

☑ Note for Activity Records:
☉ The quantitative biological activities were primarily integrated from ChEMBL (Version-30) database and were also directly collected from PubMed literature. PubMed PMID was provided as the reference link for each activity record.

  Chemically structural similarity: I. Similar Active Natural Products in NPASS

Top-200 similar NPs were calculated against the active-NP-set (includes 4,3285 NPs with experimentally-derived bioactivity available in NPASS)

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules. Tc lies between [0, 1] where '1' indicates the highest similarity. What is Tanimoto coefficient

●  The left chart: Distribution of similarity level between NPC219397 and all remaining natural products in the NPASS database.
●  The right table: Most similar natural products (Tc>=0.56 or Top200).

Similarity Score Similarity Level Natural Product ID
0.7756 Intermediate Similarity NPC204970
0.7746 Intermediate Similarity NPC205926
0.7674 Intermediate Similarity NPC476651
0.7671 Intermediate Similarity NPC77777
0.7636 Intermediate Similarity NPC37957
0.7623 Intermediate Similarity NPC122886
0.7571 Intermediate Similarity NPC100863
0.7488 Intermediate Similarity NPC473569
0.7477 Intermediate Similarity NPC153923
0.7468 Intermediate Similarity NPC469722
0.7465 Intermediate Similarity NPC477160
0.7443 Intermediate Similarity NPC127996
0.7442 Intermediate Similarity NPC87714
0.743 Intermediate Similarity NPC471436
0.7421 Intermediate Similarity NPC234772
0.7403 Intermediate Similarity NPC291173
0.7389 Intermediate Similarity NPC231924
0.7383 Intermediate Similarity NPC232600
0.7364 Intermediate Similarity NPC189079
0.7339 Intermediate Similarity NPC131486
0.7333 Intermediate Similarity NPC128476
0.7322 Intermediate Similarity NPC133609
0.7321 Intermediate Similarity NPC174629
0.7311 Intermediate Similarity NPC303214
0.7309 Intermediate Similarity NPC126556
0.7301 Intermediate Similarity NPC71539
0.7301 Intermediate Similarity NPC250960
0.7289 Intermediate Similarity NPC318525
0.7289 Intermediate Similarity NPC10653
0.7286 Intermediate Similarity NPC22476
0.7281 Intermediate Similarity NPC266994
0.7265 Intermediate Similarity NPC470784
0.7264 Intermediate Similarity NPC243626
0.7256 Intermediate Similarity NPC67904
0.7237 Intermediate Similarity NPC19175
0.722 Intermediate Similarity NPC189661
0.7217 Intermediate Similarity NPC74216
0.7217 Intermediate Similarity NPC470485
0.7212 Intermediate Similarity NPC476069
0.7204 Intermediate Similarity NPC203628
0.7202 Intermediate Similarity NPC470484
0.7196 Intermediate Similarity NPC161804
0.7195 Intermediate Similarity NPC269449
0.7191 Intermediate Similarity NPC470785
0.719 Intermediate Similarity NPC244543
0.7185 Intermediate Similarity NPC477393
0.7183 Intermediate Similarity NPC230313
0.7181 Intermediate Similarity NPC46259
0.7174 Intermediate Similarity NPC471513
0.7174 Intermediate Similarity NPC473458
0.7173 Intermediate Similarity NPC477395
0.717 Intermediate Similarity NPC473004
0.7169 Intermediate Similarity NPC195787
0.7169 Intermediate Similarity NPC246140
0.7168 Intermediate Similarity NPC288110
0.7156 Intermediate Similarity NPC195636
0.7149 Intermediate Similarity NPC475133
0.7149 Intermediate Similarity NPC184680
0.713 Intermediate Similarity NPC119722
0.7129 Intermediate Similarity NPC473007
0.7125 Intermediate Similarity NPC477396
0.7124 Intermediate Similarity NPC303658
0.7123 Intermediate Similarity NPC470483
0.7119 Intermediate Similarity NPC151171
0.7117 Intermediate Similarity NPC197125
0.7101 Intermediate Similarity NPC39822
0.7098 Intermediate Similarity NPC473006
0.7093 Intermediate Similarity NPC222046
0.7085 Intermediate Similarity NPC471122
0.7075 Intermediate Similarity NPC473008
0.7074 Intermediate Similarity NPC148124
0.7046 Intermediate Similarity NPC474183
0.7045 Intermediate Similarity NPC475147
0.7039 Intermediate Similarity NPC470821
0.7031 Intermediate Similarity NPC99724
0.703 Intermediate Similarity NPC471124
0.7018 Intermediate Similarity NPC127178
0.7017 Intermediate Similarity NPC49583
0.7014 Intermediate Similarity NPC477161
0.7013 Intermediate Similarity NPC115588
0.7004 Intermediate Similarity NPC305984
0.6996 Remote Similarity NPC194740
0.6995 Remote Similarity NPC474059
0.6978 Remote Similarity NPC305542
0.6978 Remote Similarity NPC159815
0.6966 Remote Similarity NPC477397
0.6962 Remote Similarity NPC154922
0.696 Remote Similarity NPC470002
0.696 Remote Similarity NPC470001
0.6958 Remote Similarity NPC469452
0.6955 Remote Similarity NPC1464
0.6953 Remote Similarity NPC470480
0.6953 Remote Similarity NPC248903
0.695 Remote Similarity NPC469428
0.6947 Remote Similarity NPC30749
0.6946 Remote Similarity NPC469450
0.6941 Remote Similarity NPC138830
0.6933 Remote Similarity NPC218303
0.6933 Remote Similarity NPC82541
0.6916 Remote Similarity NPC176113
0.691 Remote Similarity NPC26928
0.6906 Remote Similarity NPC198160
0.6904 Remote Similarity NPC301501
0.6903 Remote Similarity NPC116178
0.6901 Remote Similarity NPC329932
0.6888 Remote Similarity NPC469451
0.6878 Remote Similarity NPC15987
0.6878 Remote Similarity NPC469505
0.6875 Remote Similarity NPC285192
0.6872 Remote Similarity NPC321166
0.6872 Remote Similarity NPC217903
0.6862 Remote Similarity NPC131977
0.6853 Remote Similarity NPC251071
0.6847 Remote Similarity NPC473460
0.6837 Remote Similarity NPC283207
0.6837 Remote Similarity NPC5630
0.6828 Remote Similarity NPC470481
0.6828 Remote Similarity NPC470482
0.6818 Remote Similarity NPC113455
0.6816 Remote Similarity NPC14339
0.6802 Remote Similarity NPC473005
0.6802 Remote Similarity NPC288759
0.6796 Remote Similarity NPC33507
0.6782 Remote Similarity NPC260909
0.678 Remote Similarity NPC469479
0.6779 Remote Similarity NPC285622
0.6778 Remote Similarity NPC476220
0.6778 Remote Similarity NPC160113
0.6773 Remote Similarity NPC138615
0.6773 Remote Similarity NPC218733
0.6773 Remote Similarity NPC265642
0.6773 Remote Similarity NPC132874
0.6765 Remote Similarity NPC139373
0.6762 Remote Similarity NPC127082
0.6759 Remote Similarity NPC105055
0.6759 Remote Similarity NPC22689
0.6758 Remote Similarity NPC472539
0.6758 Remote Similarity NPC472540
0.6758 Remote Similarity NPC470787
0.6756 Remote Similarity NPC212123
0.6754 Remote Similarity NPC10732
0.6751 Remote Similarity NPC223242
0.6744 Remote Similarity NPC21425
0.6741 Remote Similarity NPC301292
0.6741 Remote Similarity NPC313112
0.6735 Remote Similarity NPC120239
0.6728 Remote Similarity NPC28510
0.6727 Remote Similarity NPC472542
0.6727 Remote Similarity NPC472541
0.6727 Remote Similarity NPC90967
0.6697 Remote Similarity NPC234933
0.6696 Remote Similarity NPC477179
0.6692 Remote Similarity NPC195788
0.6692 Remote Similarity NPC237901
0.6681 Remote Similarity NPC469594
0.6667 Remote Similarity NPC477178
0.6667 Remote Similarity NPC304837
0.6667 Remote Similarity NPC25961
0.6667 Remote Similarity NPC477181
0.6667 Remote Similarity NPC476258
0.6667 Remote Similarity NPC254850
0.6667 Remote Similarity NPC477180
0.6667 Remote Similarity NPC474366
0.6667 Remote Similarity NPC241263
0.6667 Remote Similarity NPC329830
0.6653 Remote Similarity NPC477394
0.6652 Remote Similarity NPC66909
0.6638 Remote Similarity NPC471197
0.6637 Remote Similarity NPC477173
0.6637 Remote Similarity NPC470490
0.6637 Remote Similarity NPC477174
0.6635 Remote Similarity NPC129624
0.6622 Remote Similarity NPC41216
0.662 Remote Similarity NPC166169
0.6609 Remote Similarity NPC471198
0.6608 Remote Similarity NPC478075
0.6608 Remote Similarity NPC470488
0.6607 Remote Similarity NPC64576
0.6607 Remote Similarity NPC201055
0.6607 Remote Similarity NPC254045
0.6607 Remote Similarity NPC471489
0.6607 Remote Similarity NPC151470
0.6606 Remote Similarity NPC473298
0.6602 Remote Similarity NPC315498
0.6602 Remote Similarity NPC230942
0.6597 Remote Similarity NPC13249
0.6593 Remote Similarity NPC473422
0.659 Remote Similarity NPC181928
0.6589 Remote Similarity NPC327005
0.6587 Remote Similarity NPC472114
0.6587 Remote Similarity NPC472115
0.6581 Remote Similarity NPC475609
0.6579 Remote Similarity NPC471945
0.6579 Remote Similarity NPC475259
0.6579 Remote Similarity NPC471950
0.6579 Remote Similarity NPC470491
0.6574 Remote Similarity NPC102760
0.6564 Remote Similarity NPC225400
0.6559 Remote Similarity NPC78609
0.6557 Remote Similarity NPC225857

  Chemically structural similarity: II. Similar Clinical/Approved Drugs

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules.

●  The left chart: Distribution of similarity level between NPC219397 and all drugs/candidates.
●  The right table: Most similar clinical/approved drugs (Tc>=0.56 or Top200).

Similarity Score Similarity Level Drug ID Developmental Stage
0.6842 Remote Similarity NPD5600 Discontinued
0.6833 Remote Similarity NPD6238 Discontinued
0.6816 Remote Similarity NPD3298 Approved
0.6787 Remote Similarity NPD6519 Phase 2
0.6782 Remote Similarity NPD8460 Approved
0.6782 Remote Similarity NPD8459 Approved
0.6752 Remote Similarity NPD3912 Discontinued
0.6745 Remote Similarity NPD7149 Clinical (unspecified phase)
0.6741 Remote Similarity NPD6644 Discontinued
0.6728 Remote Similarity NPD6656 Clinical (unspecified phase)
0.6709 Remote Similarity NPD6824 Clinical (unspecified phase)
0.6696 Remote Similarity NPD3591 Approved
0.6696 Remote Similarity NPD3592 Approved
0.6695 Remote Similarity NPD3437 Discontinued
0.6692 Remote Similarity NPD8465 Approved
0.6692 Remote Similarity NPD8466 Approved
0.6692 Remote Similarity NPD8467 Approved
0.6682 Remote Similarity NPD6321 Discontinued
0.6681 Remote Similarity NPD7178 Clinical (unspecified phase)
0.6681 Remote Similarity NPD4981 Phase 2
0.6667 Remote Similarity NPD814 Clinical (unspecified phase)
0.6667 Remote Similarity NPD4465 Phase 2
0.6667 Remote Similarity NPD4467 Phase 2
0.6667 Remote Similarity NPD3297 Approved
0.6652 Remote Similarity NPD2975 Approved
0.6652 Remote Similarity NPD2973 Approved
0.6652 Remote Similarity NPD2974 Approved
0.6637 Remote Similarity NPD7174 Clinical (unspecified phase)
0.6636 Remote Similarity NPD5620 Clinical (unspecified phase)
0.6636 Remote Similarity NPD6608 Clinical (unspecified phase)
0.6635 Remote Similarity NPD3984 Clinical (unspecified phase)
0.6635 Remote Similarity NPD6457 Approved
0.6635 Remote Similarity NPD3983 Phase 3
0.662 Remote Similarity NPD6297 Approved
0.6618 Remote Similarity NPD4796 Discontinued
0.6607 Remote Similarity NPD3450 Approved
0.6607 Remote Similarity NPD2493 Approved
0.6607 Remote Similarity NPD3452 Approved
0.6607 Remote Similarity NPD2494 Approved
0.6605 Remote Similarity NPD4078 Clinical (unspecified phase)
0.6603 Remote Similarity NPD5186 Approved
0.6603 Remote Similarity NPD5183 Approved
0.6602 Remote Similarity NPD1743 Approved
0.6602 Remote Similarity NPD19 Approved
0.6602 Remote Similarity NPD1742 Approved
0.6591 Remote Similarity NPD8425 Approved
0.6591 Remote Similarity NPD8426 Approved
0.6589 Remote Similarity NPD8363 Approved
0.6589 Remote Similarity NPD8364 Approved
0.6584 Remote Similarity NPD4846 Phase 2
0.6583 Remote Similarity NPD3442 Approved
0.6583 Remote Similarity NPD3441 Approved
0.6577 Remote Similarity NPD7238 Clinical (unspecified phase)
0.6574 Remote Similarity NPD6851 Approved
0.6574 Remote Similarity NPD6853 Approved
0.6571 Remote Similarity NPD7432 Phase 2
0.6567 Remote Similarity NPD3940 Clinical (unspecified phase)
0.6565 Remote Similarity NPD8429 Approved
0.6565 Remote Similarity NPD8427 Approved
0.6565 Remote Similarity NPD8428 Approved
0.6562 Remote Similarity NPD4580 Approved
0.6538 Remote Similarity NPD8365 Clinical (unspecified phase)
0.6532 Remote Similarity NPD5582 Discontinued
0.6532 Remote Similarity NPD3964 Approved
0.6529 Remote Similarity NPD6625 Approved
0.6526 Remote Similarity NPD3793 Phase 3
0.6526 Remote Similarity NPD3050 Clinical (unspecified phase)
0.6524 Remote Similarity NPD8149 Discontinued
0.6522 Remote Similarity NPD8255 Phase 2
0.652 Remote Similarity NPD5102 Clinical (unspecified phase)
0.652 Remote Similarity NPD4582 Approved
0.652 Remote Similarity NPD4583 Approved
0.6516 Remote Similarity NPD7048 Phase 3
0.6516 Remote Similarity NPD5610 Approved
0.6507 Remote Similarity NPD2042 Clinical (unspecified phase)
0.6507 Remote Similarity NPD2904 Discontinued
0.6507 Remote Similarity NPD2041 Clinical (unspecified phase)
0.6507 Remote Similarity NPD4859 Phase 1
0.6507 Remote Similarity NPD8027 Approved
0.6504 Remote Similarity NPD6795 Clinical (unspecified phase)
0.6504 Remote Similarity NPD3106 Clinical (unspecified phase)
0.6498 Remote Similarity NPD6021 Clinical (unspecified phase)
0.6498 Remote Similarity NPD6997 Phase 2
0.6495 Remote Similarity NPD5900 Clinical (unspecified phase)
0.6494 Remote Similarity NPD1945 Phase 1
0.6483 Remote Similarity NPD3783 Clinical (unspecified phase)
0.6479 Remote Similarity NPD5940 Clinical (unspecified phase)
0.6476 Remote Similarity NPD4002 Approved
0.6476 Remote Similarity NPD4004 Approved
0.6473 Remote Similarity NPD5071 Phase 2
0.6457 Remote Similarity NPD7667 Clinical (unspecified phase)
0.6453 Remote Similarity NPD5561 Approved
0.6453 Remote Similarity NPD5562 Approved
0.6452 Remote Similarity NPD7280 Phase 3
0.6452 Remote Similarity NPD7281 Phase 3
0.6452 Remote Similarity NPD4946 Phase 2
0.6449 Remote Similarity NPD5334 Clinical (unspecified phase)
0.6449 Remote Similarity NPD5521 Clinical (unspecified phase)
0.6447 Remote Similarity NPD4040 Phase 1
0.6441 Remote Similarity NPD4539 Phase 1
0.6438 Remote Similarity NPD8103 Clinical (unspecified phase)
0.6438 Remote Similarity NPD3863 Clinical (unspecified phase)
0.6429 Remote Similarity NPD6037 Discontinued
0.6425 Remote Similarity NPD6668 Clinical (unspecified phase)
0.6425 Remote Similarity NPD5294 Clinical (unspecified phase)
0.6425 Remote Similarity NPD8240 Discontinued
0.642 Remote Similarity NPD4885 Approved
0.6419 Remote Similarity NPD7479 Phase 2
0.6414 Remote Similarity NPD5433 Clinical (unspecified phase)
0.6411 Remote Similarity NPD6533 Clinical (unspecified phase)
0.6409 Remote Similarity NPD4157 Discontinued
0.6406 Remote Similarity NPD4419 Clinical (unspecified phase)
0.6405 Remote Similarity NPD6199 Discontinued
0.6404 Remote Similarity NPD7064 Clinical (unspecified phase)
0.6395 Remote Similarity NPD4492 Approved
0.6395 Remote Similarity NPD4494 Approved
0.6394 Remote Similarity NPD5967 Approved
0.6389 Remote Similarity NPD5482 Discontinued
0.6389 Remote Similarity NPD6654 Clinical (unspecified phase)
0.6382 Remote Similarity NPD6982 Phase 2
0.638 Remote Similarity NPD5896 Clinical (unspecified phase)
0.6376 Remote Similarity NPD3946 Clinical (unspecified phase)
0.6372 Remote Similarity NPD5547 Clinical (unspecified phase)
0.6372 Remote Similarity NPD42 Phase 2
0.6372 Remote Similarity NPD6042 Phase 2
0.6372 Remote Similarity NPD6874 Approved
0.6371 Remote Similarity NPD2899 Discontinued
0.6367 Remote Similarity NPD8461 Discontinued
0.6364 Remote Similarity NPD4154 Approved
0.636 Remote Similarity NPD8311 Discontinued
0.6356 Remote Similarity NPD3949 Clinical (unspecified phase)
0.6352 Remote Similarity NPD4206 Approved
0.6351 Remote Similarity NPD3808 Clinical (unspecified phase)
0.6351 Remote Similarity NPD2490 Approved
0.6351 Remote Similarity NPD2488 Approved
0.6349 Remote Similarity NPD3263 Phase 3
0.6339 Remote Similarity NPD4771 Phase 2
0.6338 Remote Similarity NPD2215 Approved
0.6338 Remote Similarity NPD2216 Approved
0.6338 Remote Similarity NPD8051 Clinical (unspecified phase)
0.6333 Remote Similarity NPD7278 Phase 2
0.6333 Remote Similarity NPD7279 Phase 2
0.6332 Remote Similarity NPD7597 Clinical (unspecified phase)
0.6331 Remote Similarity NPD7025 Clinical (unspecified phase)
0.633 Remote Similarity NPD7132 Clinical (unspecified phase)
0.6327 Remote Similarity NPD8489 Phase 1
0.6327 Remote Similarity NPD4373 Phase 2
0.6326 Remote Similarity NPD5603 Clinical (unspecified phase)
0.6323 Remote Similarity NPD3601 Discontinued
0.6323 Remote Similarity NPD5937 Approved
0.632 Remote Similarity NPD7583 Approved
0.6316 Remote Similarity NPD7566 Clinical (unspecified phase)
0.6313 Remote Similarity NPD6211 Clinical (unspecified phase)
0.6307 Remote Similarity NPD7821 Clinical (unspecified phase)
0.6301 Remote Similarity NPD2971 Approved
0.6301 Remote Similarity NPD2968 Approved
0.63 Remote Similarity NPD7811 Phase 3
0.63 Remote Similarity NPD7810 Phase 3
0.6298 Remote Similarity NPD4455 Discontinued
0.6293 Remote Similarity NPD2907 Approved
0.6293 Remote Similarity NPD2916 Discontinued
0.6293 Remote Similarity NPD7585 Approved
0.6293 Remote Similarity NPD2906 Approved
0.6293 Remote Similarity NPD3472 Approved
0.6293 Remote Similarity NPD4022 Approved
0.6293 Remote Similarity NPD4082 Approved
0.629 Remote Similarity NPD3120 Approved
0.629 Remote Similarity NPD3119 Phase 1
0.6281 Remote Similarity NPD7186 Phase 3
0.6279 Remote Similarity NPD7449 Clinical (unspecified phase)
0.6273 Remote Similarity NPD8167 Discontinued
0.6272 Remote Similarity NPD6612 Phase 2
0.627 Remote Similarity NPD7589 Clinical (unspecified phase)
0.627 Remote Similarity NPD4952 Phase 3
0.627 Remote Similarity NPD8359 Phase 2
0.6266 Remote Similarity NPD7820 Phase 3
0.6265 Remote Similarity NPD8017 Clinical (unspecified phase)
0.6265 Remote Similarity NPD8016 Phase 3
0.6262 Remote Similarity NPD2388 Discontinued
0.6261 Remote Similarity NPD1339 Discontinued
0.6261 Remote Similarity NPD6835 Approved
0.6256 Remote Similarity NPD3141 Discontinued
0.6256 Remote Similarity NPD7190 Clinical (unspecified phase)
0.6255 Remote Similarity NPD3888 Discontinued
0.625 Remote Similarity NPD4596 Phase 1
0.625 Remote Similarity NPD4923 Phase 1
0.625 Remote Similarity NPD6072 Discontinued
0.625 Remote Similarity NPD7584 Approved
0.625 Remote Similarity NPD3479 Discontinued
0.6245 Remote Similarity NPD7047 Phase 3
0.6245 Remote Similarity NPD7284 Clinical (unspecified phase)
0.6245 Remote Similarity NPD3416 Discontinued
0.6244 Remote Similarity NPD4986 Clinical (unspecified phase)
0.6244 Remote Similarity NPD6340 Approved
0.6244 Remote Similarity NPD6339 Approved
0.6239 Remote Similarity NPD3372 Discontinued
0.6239 Remote Similarity NPD5645 Phase 3
0.6237 Remote Similarity NPD8310 Clinical (unspecified phase)
0.6234 Remote Similarity NPD5496 Approved
0.6233 Remote Similarity NPD2845 Phase 2

  Bioactivity similarity: Similar Natural Products in NPASS

Bioactivity similarity was calculated based on bioactivity descriptors of compounds. The bioactivity descriptors were calculated by a recently developed AI algorithm Chemical Checker (CC) [Nature Biotechnology, 38:1087–1096, 2020; Nature Communications, 12:3932, 2021], which evaluated bioactivity similarities at five levels:
A: chemistry similarity;
B: biological targets similarity;
C: networks similarity;
D: cell-based bioactivity similarity;
E: similarity based on clinical data.

Those 5 categories of CC bioactivity descriptors were calculated and then subjected to manifold projection using UMAP algorithm, to project all NPs on a 2-Dimensional space. The current NP was highlighted with a small circle in the 2-D map. Below figures: left-to-right, A-to-E.

A: chemistry similarity
B: biological targets similarity
C: networks similarity
D: cell-based bioactivity similarity
E: similarity based on clinical data