Structure

Physi-Chem Properties

Molecular Weight:  315.15
Volume:  312.714
LogP:  1.291
LogD:  0.573
LogS:  -2.105
# Rotatable Bonds:  1
TPSA:  59.0
# H-Bond Aceptor:  5
# H-Bond Donor:  1
# Rings:  5
# Heavy Atoms:  5

MedChem Properties

QED Drug-Likeness Score:  0.839
Synthetic Accessibility Score:  4.98
Fsp3:  0.611
Lipinski Rule-of-5:  Accepted
Pfizer Rule:  Accepted
GSK Rule:  Accepted
BMS Rule:  0
Golden Triangle Rule:  Accepted
Chelating Alert:  0
PAINS Alert:  0

ADMET Properties (ADMETlab2.0)

ADMET: Absorption

Caco-2 Permeability:  -5.039
MDCK Permeability:  1.7431888409191743e-05
Pgp-inhibitor:  0.004
Pgp-substrate:  0.987
Human Intestinal Absorption (HIA):  0.006
20% Bioavailability (F20%):  0.004
30% Bioavailability (F30%):  0.994

ADMET: Distribution

Blood-Brain-Barrier Penetration (BBB):  0.994
Plasma Protein Binding (PPB):  32.98878860473633%
Volume Distribution (VD):  3.2
Pgp-substrate:  65.56477355957031%

ADMET: Metabolism

CYP1A2-inhibitor:  0.052
CYP1A2-substrate:  0.637
CYP2C19-inhibitor:  0.025
CYP2C19-substrate:  0.919
CYP2C9-inhibitor:  0.017
CYP2C9-substrate:  0.198
CYP2D6-inhibitor:  0.087
CYP2D6-substrate:  0.897
CYP3A4-inhibitor:  0.039
CYP3A4-substrate:  0.839

ADMET: Excretion

Clearance (CL):  6.437
Half-life (T1/2):  0.684

ADMET: Toxicity

hERG Blockers:  0.303
Human Hepatotoxicity (H-HT):  0.438
Drug-inuced Liver Injury (DILI):  0.046
AMES Toxicity:  0.104
Rat Oral Acute Toxicity:  0.952
Maximum Recommended Daily Dose:  0.922
Skin Sensitization:  0.396
Carcinogencity:  0.962
Eye Corrosion:  0.003
Eye Irritation:  0.009
Respiratory Toxicity:  0.925

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General Info & Identifiers & Properties  
Structure MOL file  
Source Organisms  
Biological Activities  
Similar NPs/Drugs  

  Natural Product: NPC66909

Natural Product ID:  NPC66909
Common Name*:   Oxycodone
IUPAC Name:   (4R,4aS,7aR,12bS)-4a-hydroxy-9-methoxy-3-methyl-2,4,5,6,7a,13-hexahydro-1H-4,12-methanobenzofuro[3,2-e]isoquinoline-7-one
Synonyms:   Oxicone; Oxycodone; Oxycontin; Proladone
Standard InCHIKey:  BRUQQQPBMZOVGD-XFKAJCMBSA-N
Standard InCHI:  InChI=1S/C18H21NO4/c1-19-8-7-17-14-10-3-4-12(22-2)15(14)23-16(17)11(20)5-6-18(17,21)13(19)9-10/h3-4,13,16,21H,5-9H2,1-2H3/t13-,16+,17+,18-/m1/s1
SMILES:  CN1CC[C@]23c4c5ccc(c4O[C@H]2C(=O)CC[C@]3([C@H]1C5)O)OC
Synthetic Gene Cluster:   n.a.
ChEMBL Identifier:   CHEMBL656
PubChem CID:   5284603
Chemical Classification**:  
  • CHEMONTID:0000000 [Organic compounds]
    • [CHEMONTID:0002448] Benzenoids
      • [CHEMONTID:0000025] Phenanthrenes and derivatives

*Note: the InCHIKey will be temporarily assigned as the "Common Name" if no IUPAC name or alternative short name is available.
**Note: the Chemical Classification was calculated by NPClassifier Version 1.5. Reference: PMID:34662515.

  Species Source

Organism ID Organism Name Taxonomy Level Family SuperKingdom Isolation Part Collection Location Collection Time Reference
NPO9498 Papaver somniferum Species Papaveraceae Eukaryota n.a. n.a. n.a. PMID[15019787]
NPO9498 Papaver somniferum Species Papaveraceae Eukaryota n.a. n.a. n.a. PMID[22029392]
NPO9498 Papaver somniferum Species Papaveraceae Eukaryota n.a. n.a. n.a. PMID[23517479]
NPO9498 Papaver somniferum Species Papaveraceae Eukaryota Latex Exudate n.a. n.a. Database[FooDB]
NPO9498 Papaver somniferum Species Papaveraceae Eukaryota Seed n.a. n.a. Database[FooDB]
NPO9498 Papaver somniferum Species Papaveraceae Eukaryota n.a. n.a. Database[FooDB]
NPO9498 Papaver somniferum Species Papaveraceae Eukaryota n.a. n.a. Database[FooDB]
NPO9498 Papaver somniferum Species Papaveraceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO9498 Papaver somniferum Species Papaveraceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO9498 Papaver somniferum Species Papaveraceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO9498 Papaver somniferum Species Papaveraceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO9498 Papaver somniferum Species Papaveraceae Eukaryota n.a. n.a. n.a. Database[UNPD]

☑ Note for Reference:
In addition to directly collecting NP source organism data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated them from below databases:
UNPD: Universal Natural Products Database [PMID: 23638153].
StreptomeDB: a database of streptomycetes natural products [PMID: 33051671].
TM-MC: a database of medicinal materials and chemical compounds in Northeast Asian traditional medicine [PMID: 26156871].
TCM@Taiwan: a Traditional Chinese Medicine database [PMID: 21253603].
TCMID: a Traditional Chinese Medicine database [PMID: 29106634].
TCMSP: The traditional Chinese medicine systems pharmacology database and analysis platform [PMID: 24735618].
HerDing: a herb recommendation system to treat diseases using genes and chemicals [PMID: 26980517].
MetaboLights: a metabolomics database [PMID: 27010336].
FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].

  NP Quantity Composition/Concentration

Organism ID NP ID Organism Material Preparation Organism Part NP Quantity (Standard) NP Quantity (Minimum) NP Quantity (Maximum) Quantity Unit Reference

☑ Note for Reference:
In addition to directly collecting NP quantitative data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated NP quantitative records for specific NP domains (e.g., NPS from foods or herbs) from domain-specific databases. These databases include:
DUKE: Dr. Duke's Phytochemical and Ethnobotanical Databases.
PHENOL EXPLORER: is the first comprehensive database on polyphenol content in foods [PMID: 24103452], its homepage can be accessed at here.
FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].

  Biological Activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference
NPT1069 Individual Protein Mu opioid receptor Rattus norvegicus Ki = 43.6 nM PMID[469676]
NPT3600 Individual Protein Delta opioid receptor Rattus norvegicus Ki = 1087.0 nM PMID[469676]
NPT3601 Individual Protein Kappa opioid receptor Rattus norvegicus Ki = 2658.0 nM PMID[469676]
NPT1069 Individual Protein Mu opioid receptor Rattus norvegicus Ki > 10000.0 nM PMID[469678]
NPT3600 Individual Protein Delta opioid receptor Rattus norvegicus Ki > 10000.0 nM PMID[469678]
NPT1075 Individual Protein Kappa opioid receptor Cavia porcellus Ki > 10000.0 nM PMID[469678]
NPT66 Individual Protein Acetylcholinesterase Electrophorus electricus Inhibition = 80.0 % PMID[469678]
NPT66 Individual Protein Acetylcholinesterase Electrophorus electricus IC50 = 76200.0 nM PMID[469678]
NPT1168 Individual Protein Mu opioid receptor Mus musculus Inhibition = 97.0 % PMID[469685]
NPT271 Individual Protein Delta opioid receptor Homo sapiens Inhibition = 93.0 % PMID[469685]
NPT145 Individual Protein Mu opioid receptor Homo sapiens Inhibition = 93.0 % PMID[469685]
NPT3603 Individual Protein Kappa opioid receptor Mus musculus Inhibition = 59.0 % PMID[469685]
NPT272 Individual Protein Kappa opioid receptor Homo sapiens Inhibition = 47.0 % PMID[469685]
NPT3603 Individual Protein Kappa opioid receptor Mus musculus EC50 = 16000.0 nM PMID[469685]
NPT272 Individual Protein Kappa opioid receptor Homo sapiens EC50 = 16000.0 nM PMID[469685]
NPT271 Individual Protein Delta opioid receptor Homo sapiens EC50 = 4000.0 nM PMID[469685]
NPT145 Individual Protein Mu opioid receptor Homo sapiens EC50 = 500.0 nM PMID[469685]
NPT1168 Individual Protein Mu opioid receptor Mus musculus EC50 = 160.0 nM PMID[469685]
NPT145 Individual Protein Mu opioid receptor Homo sapiens Ki = 133.48 nM PMID[469692]
NPT145 Individual Protein Mu opioid receptor Homo sapiens EC50 = 478.0 nM PMID[469692]
NPT613 Individual Protein Solute carrier family 22 member 1 Homo sapiens FC = 0.9 n.a. PMID[469694]
NPT613 Individual Protein Solute carrier family 22 member 1 Homo sapiens FC = 0.8 n.a. PMID[469694]
NPT613 Individual Protein Solute carrier family 22 member 1 Homo sapiens IC50 = 2003780.0 nM PMID[469694]
NPT145 Individual Protein Mu opioid receptor Homo sapiens Ki = 12.0 nM PMID[469695]
NPT145 Individual Protein Mu opioid receptor Homo sapiens EC50 = 17.0 nM PMID[469695]
NPT145 Individual Protein Mu opioid receptor Homo sapiens Emax = 100.0 % PMID[469695]
NPT296 Individual Protein Sigma opioid receptor Homo sapiens Ki > 10000.0 nM PMID[469695]
NPT296 Individual Protein Sigma opioid receptor Homo sapiens Inhibition < 50.0 % PMID[469695]
NPT1069 Individual Protein Mu opioid receptor Rattus norvegicus Ki = 8.9 nM PMID[469696]
NPT3600 Individual Protein Delta opioid receptor Rattus norvegicus Ki = 487.0 nM PMID[469696]
NPT1075 Individual Protein Kappa opioid receptor Cavia porcellus Ki = 325.0 nM PMID[469696]
NPT1069 Individual Protein Mu opioid receptor Rattus norvegicus EC50 = 25.0 nM PMID[469696]
NPT1069 Individual Protein Mu opioid receptor Rattus norvegicus Emax = 137.0 % PMID[469696]
NPT296 Individual Protein Sigma opioid receptor Homo sapiens Inhibition < 50.0 % PMID[469698]
NPT296 Individual Protein Sigma opioid receptor Homo sapiens Ki > 10000.0 nM PMID[469698]
NPT145 Individual Protein Mu opioid receptor Homo sapiens Emax = 100.0 % PMID[469698]
NPT145 Individual Protein Mu opioid receptor Homo sapiens EC50 = 17.0 nM PMID[469698]
NPT145 Individual Protein Mu opioid receptor Homo sapiens Ki = 12.0 nM PMID[469698]
NPT27 Others Unspecified Vdss = 2.3 L.kg-1 PMID[469674]
NPT27 Others Unspecified Fu = 0.55 n.a. PMID[469674]
NPT35 Others n.a. pKa = 8.53 n.a. PMID[469674]
NPT32 Organism Mus musculus Mus musculus ED50 = 1.5 umol.kg-1 PMID[469675]
NPT29 Organism Rattus norvegicus Rattus norvegicus ED50 = 2.9 umol.kg-1 PMID[469675]
NPT32 Organism Mus musculus Mus musculus ED50 = 1.37 mg.kg-1 PMID[469676]
NPT32 Organism Mus musculus Mus musculus ED50 = 0.94 mg.kg-1 PMID[469676]
NPT32 Organism Mus musculus Mus musculus ED50 = 0.38 mg.kg-1 PMID[469676]
NPT3602 Others Opioid receptors; mu & delta Rattus norvegicus Selectivity ratio = 25.0 n.a. PMID[469676]
NPT2 Others Unspecified Selectivity ratio = 61.0 n.a. PMID[469676]
NPT605 Organism Homo sapiens Homo sapiens CL = 6.1 mL.min-1.kg-1 PMID[469677]
NPT605 Organism Homo sapiens Homo sapiens CL_renal = 1.1 mL.min-1.kg-1 PMID[469677]
NPT2 Others Unspecified Selectivity ratio = 1.0 n.a. PMID[469678]
NPT20529 NON-MOLECULAR NON-PROTEIN TARGET n.a. Fu = 0.55 n.a. PMID[469679]
NPT27 Others Unspecified Vdss = 2.5 L.kg-1 PMID[469679]
NPT27 Others Unspecified T1/2 = 5.5 hr PMID[469679]
NPT27 Others Unspecified CL = 6.1 mL.min-1.kg-1 PMID[469679]
NPT27 Others Unspecified MRT = 6.8 hr PMID[469679]
NPT27 Others Unspecified log10(%HIA +10) = 1.845 n.a. PMID[469680]
NPT614 Tissue Plasma Rattus norvegicus Cp(f) = 0.33 uM PMID[469681]
NPT632 Tissue Brain Rattus norvegicus Vdu = 4.2 ml PMID[469681]
NPT614 Tissue Plasma Rattus norvegicus Fu = 0.87 n.a. PMID[469681]
NPT27 Others Unspecified BPR = 3.77 n.a. PMID[469681]
NPT27 Others Unspecified K(p,uu,brain) = 1.03 n.a. PMID[469681]
NPT614 Tissue Plasma Rattus norvegicus K(p,uu,CSF) = 0.65 n.a. PMID[469681]
NPT902 Individual Protein UDP-glucuronosyltransferase 1A4 Homo sapiens Activity = 0.0 pm/min/mg PMID[469682]
NPT704 Individual Protein UDP-glucuronosyltransferase 2B15 Homo sapiens Activity = 0.0 pm/min/mg PMID[469682]
NPT20596 PHENOTYPE Hepatotoxicity n.a. HepSE_bilirubinemia = 0.0 n.a. PMID[469683]
NPT20596 PHENOTYPE Hepatotoxicity n.a. HepSE_cholecystitis = 0.0 n.a. PMID[469683]
NPT20596 PHENOTYPE Hepatotoxicity n.a. HepSE_cholelithiasis = 0.0 n.a. PMID[469683]
NPT20596 PHENOTYPE Hepatotoxicity n.a. HepSE_cirrhosis = 0.0 n.a. PMID[469683]
NPT20596 PHENOTYPE Hepatotoxicity n.a. HepSE_elevated liver function tests = 0.0 n.a. PMID[469683]
NPT20596 PHENOTYPE Hepatotoxicity n.a. HepSE_hepatic failure = 0.0 n.a. PMID[469683]
NPT20596 PHENOTYPE Hepatotoxicity n.a. HepSE_hepatic necrosis = 0.0 n.a. PMID[469683]
NPT20596 PHENOTYPE Hepatotoxicity n.a. HepSE_hepatitis = 0.0 n.a. PMID[469683]
NPT20596 PHENOTYPE Hepatotoxicity n.a. HepSE_hepatomegaly = 1.0 n.a. PMID[469683]
NPT20596 PHENOTYPE Hepatotoxicity n.a. HepSE_jaundice = 0.0 n.a. PMID[469683]
NPT20596 PHENOTYPE Hepatotoxicity n.a. HepSE_liver disease = 0.0 n.a. PMID[469683]
NPT20596 PHENOTYPE Hepatotoxicity n.a. HepSE_liver fatty = 0.0 n.a. PMID[469683]
NPT20596 PHENOTYPE Hepatotoxicity n.a. HepSE_liver function tests abnormal = 0.0 n.a. PMID[469683]
NPT20596 PHENOTYPE Hepatotoxicity n.a. HepSE_Combined Scores = 1.0 n.a. PMID[469683]
NPT20913 TISSUE Whole blood Homo sapiens Retention_time = 2.67 min PMID[469684]
NPT2 Others Unspecified Ratio EC50 = 32.0 n.a. PMID[469685]
NPT2 Others Unspecified Ratio EC50 = 4.0 n.a. PMID[469685]
NPT35 Others n.a. pKa n.a. 8.53 n.a. PMID[469686]
NPT32 Organism Mus musculus Mus musculus ED50 = 1.3 mg.kg-1 PMID[469687]
NPT32 Organism Mus musculus Mus musculus MPE = 63.3 % PMID[469688]
NPT32 Organism Mus musculus Mus musculus MPE = 66.9 % PMID[469688]
NPT32 Organism Mus musculus Mus musculus MPE = 52.9 % PMID[469688]
NPT32 Organism Mus musculus Mus musculus Activity = 0.9 % PMID[469688]
NPT32 Organism Mus musculus Mus musculus Activity = 3.9 % PMID[469688]
NPT32 Organism Mus musculus Mus musculus UI = 1.5 n.a. PMID[469688]
NPT632 Tissue Brain Rattus norvegicus Kp = 2.78 n.a. PMID[469689]
NPT632 Tissue Brain Rattus norvegicus Vd = 4.2 L.kg-1 PMID[469689]
NPT632 Tissue Brain Rattus norvegicus Fu = 0.66 n.a. PMID[469689]
NPT35 Others n.a. pKa = 9.1 n.a. PMID[469689]
NPT29 Organism Rattus norvegicus Rattus norvegicus K(p,uu,brain) = 3.0 n.a. PMID[469691]
NPT605 Organism Homo sapiens Homo sapiens DILI_severity_class = 0.0 n.a. PMID[469693]
NPT35 Others n.a. Peff = 17.9 ucm/s PMID[469694]
NPT27 Others Unspecified Cmax = 50.0 nM PMID[469694]
NPT2 Others Unspecified Ratio = 0.001 n.a. PMID[469694]
NPT2 Others Unspecified Ratio = 0.0003 n.a. PMID[469694]
NPT27 Others Unspecified fCmax = 0.03 uM PMID[469694]
NPT27 Others Unspecified fCmax = 1.06 uM PMID[469694]
NPT2 Others Unspecified Ratio = 0.00001 n.a. PMID[469694]
NPT27 Others Unspecified fCmax = 0.54 uM PMID[469694]
NPT32 Organism Mus musculus Mus musculus ED50 = 4.3 mg.kg-1 PMID[469695]
NPT4118 Protein Family Cannabinoid receptor Rattus norvegicus Ki > 10000.0 nM PMID[469696]
NPT2 Others Unspecified Ratio Ki = 55.0 n.a. PMID[469696]
NPT2 Others Unspecified Ratio Ki = 37.0 n.a. PMID[469696]
NPT2 Others Unspecified EC50 = 51.0 nM PMID[469696]
NPT29 Organism Rattus norvegicus Rattus norvegicus Activity = 43.0 g PMID[469696]
NPT29 Organism Rattus norvegicus Rattus norvegicus Activity = 40.0 g PMID[469696]
NPT2 Others Unspecified Emax = 135.0 % PMID[469696]
NPT20555 ORGANISM SARS-CoV-2 Severe acute respiratory syndrome coronavirus 2 IC50 > 20000.0 nM PMID[469697]
NPT20555 ORGANISM SARS-CoV-2 Severe acute respiratory syndrome coronavirus 2 IC50 > 19952.62 nM PMID[469697]
NPT32 Organism Mus musculus Mus musculus Inhibition = 51.0 % PMID[469698]
NPT98 Individual Protein HERG Homo sapiens Inhibition < 50.0 % PMID[469698]
NPT98 Individual Protein HERG Homo sapiens IC50 > 10000.0 nM PMID[469698]

☑ Note for Activity Records:
☉ The quantitative biological activities were primarily integrated from ChEMBL (Version-30) database and were also directly collected from PubMed literature. PubMed PMID was provided as the reference link for each activity record.

  Chemically structural similarity: I. Similar Active Natural Products in NPASS

Top-200 similar NPs were calculated against the active-NP-set (includes 4,3285 NPs with experimentally-derived bioactivity available in NPASS)

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules. Tc lies between [0, 1] where '1' indicates the highest similarity. What is Tanimoto coefficient

●  The left chart: Distribution of similarity level between NPC66909 and all remaining natural products in the NPASS database.
●  The right table: Most similar natural products (Tc>=0.56 or Top200).

Similarity Score Similarity Level Natural Product ID
0.9665 High Similarity NPC64576
0.9665 High Similarity NPC151470
0.9665 High Similarity NPC254045
0.9665 High Similarity NPC201055
0.9257 High Similarity NPC115906
0.8994 High Similarity NPC214629
0.8495 Intermediate Similarity NPC196231
0.8482 Intermediate Similarity NPC67346
0.8415 Intermediate Similarity NPC298339
0.8385 Intermediate Similarity NPC140577
0.8385 Intermediate Similarity NPC43069
0.836 Intermediate Similarity NPC174783
0.8352 Intermediate Similarity NPC475780
0.829 Intermediate Similarity NPC97086
0.8281 Intermediate Similarity NPC474427
0.8238 Intermediate Similarity NPC311781
0.822 Intermediate Similarity NPC474432
0.822 Intermediate Similarity NPC475713
0.8216 Intermediate Similarity NPC305847
0.8196 Intermediate Similarity NPC232533
0.8182 Intermediate Similarity NPC180756
0.8182 Intermediate Similarity NPC323443
0.8177 Intermediate Similarity NPC293624
0.8172 Intermediate Similarity NPC302449
0.8167 Intermediate Similarity NPC124657
0.8122 Intermediate Similarity NPC157958
0.8103 Intermediate Similarity NPC243483
0.801 Intermediate Similarity NPC244191
0.7979 Intermediate Similarity NPC248642
0.7937 Intermediate Similarity NPC156576
0.7919 Intermediate Similarity NPC475747
0.7903 Intermediate Similarity NPC329969
0.7889 Intermediate Similarity NPC476500
0.7889 Intermediate Similarity NPC126211
0.7876 Intermediate Similarity NPC94499
0.7872 Intermediate Similarity NPC126284
0.7853 Intermediate Similarity NPC214116
0.7846 Intermediate Similarity NPC279665
0.7828 Intermediate Similarity NPC286135
0.7814 Intermediate Similarity NPC3375
0.7814 Intermediate Similarity NPC255607
0.7778 Intermediate Similarity NPC220961
0.7778 Intermediate Similarity NPC99179
0.7778 Intermediate Similarity NPC149285
0.7766 Intermediate Similarity NPC35680
0.776 Intermediate Similarity NPC162694
0.7735 Intermediate Similarity NPC476572
0.773 Intermediate Similarity NPC12053
0.773 Intermediate Similarity NPC205421
0.773 Intermediate Similarity NPC81218
0.773 Intermediate Similarity NPC158376
0.773 Intermediate Similarity NPC474931
0.773 Intermediate Similarity NPC306555
0.773 Intermediate Similarity NPC145832
0.773 Intermediate Similarity NPC117188
0.772 Intermediate Similarity NPC237579
0.772 Intermediate Similarity NPC141440
0.7716 Intermediate Similarity NPC83019
0.7665 Intermediate Similarity NPC204580
0.7654 Intermediate Similarity NPC8337
0.7654 Intermediate Similarity NPC85747
0.765 Intermediate Similarity NPC226428
0.7637 Intermediate Similarity NPC129603
0.7634 Intermediate Similarity NPC150879
0.7634 Intermediate Similarity NPC247389
0.7632 Intermediate Similarity NPC118633
0.7632 Intermediate Similarity NPC148693
0.7632 Intermediate Similarity NPC294790
0.7632 Intermediate Similarity NPC114364
0.7632 Intermediate Similarity NPC320223
0.7626 Intermediate Similarity NPC46744
0.7626 Intermediate Similarity NPC124302
0.7626 Intermediate Similarity NPC14622
0.7626 Intermediate Similarity NPC215098
0.7626 Intermediate Similarity NPC73020
0.7626 Intermediate Similarity NPC70290
0.7624 Intermediate Similarity NPC99659
0.7624 Intermediate Similarity NPC80472
0.7624 Intermediate Similarity NPC325871
0.7622 Intermediate Similarity NPC212794
0.7622 Intermediate Similarity NPC136508
0.7622 Intermediate Similarity NPC13504
0.7622 Intermediate Similarity NPC78222
0.7622 Intermediate Similarity NPC306843
0.7622 Intermediate Similarity NPC253043
0.7622 Intermediate Similarity NPC96603
0.7622 Intermediate Similarity NPC196447
0.7622 Intermediate Similarity NPC477563
0.7614 Intermediate Similarity NPC33256
0.7614 Intermediate Similarity NPC470646
0.7606 Intermediate Similarity NPC227683
0.7606 Intermediate Similarity NPC239775
0.7602 Intermediate Similarity NPC117717
0.7581 Intermediate Similarity NPC24264
0.7581 Intermediate Similarity NPC476432
0.7581 Intermediate Similarity NPC219341
0.7568 Intermediate Similarity NPC218614
0.7568 Intermediate Similarity NPC324144
0.7568 Intermediate Similarity NPC1229
0.7566 Intermediate Similarity NPC2314
0.7562 Intermediate Similarity NPC202771
0.7562 Intermediate Similarity NPC328700
0.7562 Intermediate Similarity NPC2173
0.7562 Intermediate Similarity NPC119818
0.7553 Intermediate Similarity NPC168753
0.7553 Intermediate Similarity NPC118274
0.7551 Intermediate Similarity NPC475754
0.755 Intermediate Similarity NPC314100
0.755 Intermediate Similarity NPC72788
0.755 Intermediate Similarity NPC120671
0.755 Intermediate Similarity NPC226652
0.754 Intermediate Similarity NPC284842
0.7527 Intermediate Similarity NPC16805
0.7527 Intermediate Similarity NPC167546
0.7527 Intermediate Similarity NPC302527
0.7527 Intermediate Similarity NPC225774
0.7526 Intermediate Similarity NPC128560
0.7526 Intermediate Similarity NPC229166
0.7526 Intermediate Similarity NPC199465
0.7523 Intermediate Similarity NPC473458
0.7523 Intermediate Similarity NPC471513
0.7513 Intermediate Similarity NPC149090
0.7513 Intermediate Similarity NPC476575
0.7513 Intermediate Similarity NPC19520
0.7512 Intermediate Similarity NPC476496
0.7512 Intermediate Similarity NPC46990
0.75 Intermediate Similarity NPC326895
0.75 Intermediate Similarity NPC11708
0.75 Intermediate Similarity NPC267408
0.75 Intermediate Similarity NPC244554
0.7487 Intermediate Similarity NPC474470
0.7474 Intermediate Similarity NPC192135
0.7474 Intermediate Similarity NPC477020
0.7474 Intermediate Similarity NPC66341
0.7473 Intermediate Similarity NPC233650
0.7464 Intermediate Similarity NPC38964
0.7463 Intermediate Similarity NPC476495
0.7463 Intermediate Similarity NPC94687
0.7463 Intermediate Similarity NPC106840
0.7462 Intermediate Similarity NPC63152
0.7459 Intermediate Similarity NPC81733
0.7459 Intermediate Similarity NPC326316
0.7459 Intermediate Similarity NPC27410
0.7459 Intermediate Similarity NPC166014
0.7448 Intermediate Similarity NPC329816
0.7447 Intermediate Similarity NPC298979
0.7447 Intermediate Similarity NPC210918
0.7447 Intermediate Similarity NPC252960
0.7446 Intermediate Similarity NPC315707
0.7446 Intermediate Similarity NPC40389
0.7446 Intermediate Similarity NPC78359
0.7446 Intermediate Similarity NPC65490
0.7446 Intermediate Similarity NPC148014
0.7433 Intermediate Similarity NPC134858
0.7432 Intermediate Similarity NPC477395
0.7424 Intermediate Similarity NPC478093
0.7423 Intermediate Similarity NPC116284
0.7423 Intermediate Similarity NPC233718
0.7421 Intermediate Similarity NPC225597
0.7421 Intermediate Similarity NPC150131
0.7421 Intermediate Similarity NPC470739
0.7421 Intermediate Similarity NPC477640
0.7411 Intermediate Similarity NPC82763
0.7409 Intermediate Similarity NPC474507
0.7407 Intermediate Similarity NPC83198
0.7407 Intermediate Similarity NPC204908
0.7407 Intermediate Similarity NPC266176
0.7407 Intermediate Similarity NPC158148
0.7407 Intermediate Similarity NPC290759
0.7407 Intermediate Similarity NPC82533
0.7405 Intermediate Similarity NPC59028
0.7405 Intermediate Similarity NPC92191
0.7398 Intermediate Similarity NPC230098
0.7398 Intermediate Similarity NPC57036
0.7396 Intermediate Similarity NPC241704
0.7396 Intermediate Similarity NPC472638
0.7396 Intermediate Similarity NPC472639
0.7393 Intermediate Similarity NPC82056
0.7387 Intermediate Similarity NPC478092
0.7387 Intermediate Similarity NPC473589
0.7387 Intermediate Similarity NPC30182
0.7387 Intermediate Similarity NPC478091
0.7385 Intermediate Similarity NPC302275
0.7385 Intermediate Similarity NPC135772
0.7382 Intermediate Similarity NPC232386
0.7382 Intermediate Similarity NPC152680
0.7382 Intermediate Similarity NPC190783
0.738 Intermediate Similarity NPC476569
0.7378 Intermediate Similarity NPC477396
0.7374 Intermediate Similarity NPC226708
0.7373 Intermediate Similarity NPC477397
0.7371 Intermediate Similarity NPC473562
0.7371 Intermediate Similarity NPC474506
0.7371 Intermediate Similarity NPC32413
0.7368 Intermediate Similarity NPC69712
0.7368 Intermediate Similarity NPC477562
0.7368 Intermediate Similarity NPC474475
0.7368 Intermediate Similarity NPC26240
0.7366 Intermediate Similarity NPC306902
0.7366 Intermediate Similarity NPC477393

  Chemically structural similarity: II. Similar Clinical/Approved Drugs

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules.

●  The left chart: Distribution of similarity level between NPC66909 and all drugs/candidates.
●  The right table: Most similar clinical/approved drugs (Tc>=0.56 or Top200).

Similarity Score Similarity Level Drug ID Developmental Stage
1.0 High Similarity NPD2973 Approved
1.0 High Similarity NPD2974 Approved
1.0 High Similarity NPD2975 Approved
0.9831 High Similarity NPD4580 Approved
0.9775 High Similarity NPD2494 Approved
0.9775 High Similarity NPD2493 Approved
0.9665 High Similarity NPD3452 Approved
0.9665 High Similarity NPD3450 Approved
0.9613 High Similarity NPD4582 Approved
0.9613 High Similarity NPD4583 Approved
0.9558 High Similarity NPD4004 Approved
0.9558 High Similarity NPD4002 Approved
0.9257 High Similarity NPD2971 Approved
0.9257 High Similarity NPD2968 Approved
0.9162 High Similarity NPD2488 Approved
0.9162 High Similarity NPD2490 Approved
0.8634 High Similarity NPD7906 Approved
0.8619 High Similarity NPD4578 Approved
0.8619 High Similarity NPD4577 Approved
0.8593 High Similarity NPD7907 Approved
0.8579 High Similarity NPD4663 Approved
0.8492 Intermediate Similarity NPD4111 Phase 1
0.8492 Intermediate Similarity NPD4665 Approved
0.849 Intermediate Similarity NPD4040 Phase 1
0.8482 Intermediate Similarity NPD3057 Approved
0.8475 Intermediate Similarity NPD3051 Approved
0.8415 Intermediate Similarity NPD3534 Clinical (unspecified phase)
0.8385 Intermediate Similarity NPD3533 Approved
0.8385 Intermediate Similarity NPD2972 Approved
0.8377 Intermediate Similarity NPD4107 Approved
0.8325 Intermediate Similarity NPD5676 Approved
0.8324 Intermediate Similarity NPD2970 Approved
0.8324 Intermediate Similarity NPD2969 Approved
0.8278 Intermediate Similarity NPD4481 Phase 3
0.8238 Intermediate Similarity NPD4482 Phase 3
0.8216 Intermediate Similarity NPD7310 Approved
0.8216 Intermediate Similarity NPD7311 Approved
0.8216 Intermediate Similarity NPD7313 Approved
0.8216 Intermediate Similarity NPD7312 Approved
0.8196 Intermediate Similarity NPD2491 Approved
0.8177 Intermediate Similarity NPD2489 Approved
0.8177 Intermediate Similarity NPD27 Approved
0.8172 Intermediate Similarity NPD7309 Approved
0.8103 Intermediate Similarity NPD3448 Approved
0.7981 Intermediate Similarity NPD7048 Phase 3
0.798 Intermediate Similarity NPD7047 Phase 3
0.7971 Intermediate Similarity NPD5619 Clinical (unspecified phase)
0.7923 Intermediate Similarity NPD6997 Phase 2
0.7795 Intermediate Similarity NPD7667 Clinical (unspecified phase)
0.7767 Intermediate Similarity NPD5980 Discovery
0.7626 Intermediate Similarity NPD4420 Approved
0.7612 Intermediate Similarity NPD7497 Discontinued
0.7562 Intermediate Similarity NPD5006 Approved
0.7562 Intermediate Similarity NPD5005 Approved
0.755 Intermediate Similarity NPD7501 Clinical (unspecified phase)
0.7526 Intermediate Similarity NPD5190 Phase 2
0.7487 Intermediate Similarity NPD6071 Discontinued
0.7474 Intermediate Similarity NPD4603 Phase 2
0.7474 Intermediate Similarity NPD42 Phase 2
0.7474 Intermediate Similarity NPD6042 Phase 2
0.7458 Intermediate Similarity NPD5241 Discontinued
0.7446 Intermediate Similarity NPD2560 Approved
0.7446 Intermediate Similarity NPD2563 Approved
0.7409 Intermediate Similarity NPD4419 Clinical (unspecified phase)
0.7292 Intermediate Similarity NPD8156 Discontinued
0.7253 Intermediate Similarity NPD3639 Approved
0.7253 Intermediate Similarity NPD3640 Phase 3
0.7253 Intermediate Similarity NPD3641 Approved
0.7247 Intermediate Similarity NPD4237 Approved
0.7247 Intermediate Similarity NPD4236 Phase 3
0.7245 Intermediate Similarity NPD8054 Approved
0.7245 Intermediate Similarity NPD8053 Approved
0.7245 Intermediate Similarity NPD7090 Clinical (unspecified phase)
0.724 Intermediate Similarity NPD8099 Discontinued
0.724 Intermediate Similarity NPD8251 Approved
0.724 Intermediate Similarity NPD8252 Approved
0.7238 Intermediate Similarity NPD1754 Clinical (unspecified phase)
0.7234 Intermediate Similarity NPD5709 Phase 3
0.7212 Intermediate Similarity NPD7701 Phase 2
0.7211 Intermediate Similarity NPD7315 Approved
0.7204 Intermediate Similarity NPD6818 Clinical (unspecified phase)
0.72 Intermediate Similarity NPD7296 Approved
0.7196 Intermediate Similarity NPD4666 Phase 3
0.7189 Intermediate Similarity NPD6385 Approved
0.7189 Intermediate Similarity NPD6386 Approved
0.7181 Intermediate Similarity NPD7831 Phase 2
0.7181 Intermediate Similarity NPD7832 Clinical (unspecified phase)
0.7181 Intermediate Similarity NPD7833 Phase 2
0.7179 Intermediate Similarity NPD7038 Approved
0.7179 Intermediate Similarity NPD7039 Approved
0.7157 Intermediate Similarity NPD7237 Clinical (unspecified phase)
0.715 Intermediate Similarity NPD3808 Clinical (unspecified phase)
0.7143 Intermediate Similarity NPD4584 Approved
0.7135 Intermediate Similarity NPD2898 Approved
0.7119 Intermediate Similarity NPD6028 Clinical (unspecified phase)
0.7119 Intermediate Similarity NPD6029 Clinical (unspecified phase)
0.7119 Intermediate Similarity NPD1753 Discontinued
0.7117 Intermediate Similarity NPD6625 Approved
0.7112 Intermediate Similarity NPD5772 Approved
0.7112 Intermediate Similarity NPD5773 Approved
0.7097 Intermediate Similarity NPD4772 Phase 2
0.7097 Intermediate Similarity NPD4773 Phase 2
0.7095 Intermediate Similarity NPD4664 Clinical (unspecified phase)
0.7086 Intermediate Similarity NPD3109 Approved
0.7086 Intermediate Similarity NPD3110 Approved
0.7083 Intermediate Similarity NPD8051 Clinical (unspecified phase)
0.7075 Intermediate Similarity NPD7827 Phase 1
0.7071 Intermediate Similarity NPD6853 Approved
0.7071 Intermediate Similarity NPD6851 Approved
0.7062 Intermediate Similarity NPD2163 Approved
0.7056 Intermediate Similarity NPD7549 Discontinued
0.7049 Intermediate Similarity NPD3146 Approved
0.7049 Intermediate Similarity NPD3688 Clinical (unspecified phase)
0.7044 Intermediate Similarity NPD4363 Phase 3
0.7044 Intermediate Similarity NPD4360 Phase 2
0.7041 Intermediate Similarity NPD6297 Approved
0.7039 Intermediate Similarity NPD4721 Approved
0.7039 Intermediate Similarity NPD4726 Approved
0.7039 Intermediate Similarity NPD4725 Approved
0.7033 Intermediate Similarity NPD6783 Clinical (unspecified phase)
0.7027 Intermediate Similarity NPD3686 Approved
0.7027 Intermediate Similarity NPD3687 Approved
0.7027 Intermediate Similarity NPD4210 Discontinued
0.7026 Intermediate Similarity NPD5313 Approved
0.7026 Intermediate Similarity NPD3050 Clinical (unspecified phase)
0.7026 Intermediate Similarity NPD5312 Approved
0.7021 Intermediate Similarity NPD6668 Clinical (unspecified phase)
0.7016 Intermediate Similarity NPD7201 Clinical (unspecified phase)
0.7011 Intermediate Similarity NPD3647 Clinical (unspecified phase)
0.701 Intermediate Similarity NPD4361 Phase 2
0.701 Intermediate Similarity NPD4362 Clinical (unspecified phase)
0.7005 Intermediate Similarity NPD7110 Phase 1
0.7005 Intermediate Similarity NPD7109 Clinical (unspecified phase)
0.7005 Intermediate Similarity NPD6072 Discontinued
0.6995 Remote Similarity NPD7184 Clinical (unspecified phase)
0.6995 Remote Similarity NPD5242 Approved
0.699 Remote Similarity NPD8285 Discontinued
0.6984 Remote Similarity NPD5978 Approved
0.6984 Remote Similarity NPD5977 Approved
0.6984 Remote Similarity NPD5616 Clinical (unspecified phase)
0.6974 Remote Similarity NPD7177 Discontinued
0.6973 Remote Similarity NPD7427 Discontinued
0.697 Remote Similarity NPD7132 Clinical (unspecified phase)
0.695 Remote Similarity NPD8055 Clinical (unspecified phase)
0.695 Remote Similarity NPD5036 Approved
0.6944 Remote Similarity NPD8404 Phase 2
0.6943 Remote Similarity NPD5711 Approved
0.6943 Remote Similarity NPD3787 Discontinued
0.6943 Remote Similarity NPD5710 Approved
0.6939 Remote Similarity NPD5095 Phase 3
0.6939 Remote Similarity NPD5844 Phase 1
0.6939 Remote Similarity NPD5096 Phase 3
0.6927 Remote Similarity NPD5494 Approved
0.6927 Remote Similarity NPD2904 Discontinued
0.6919 Remote Similarity NPD5039 Approved
0.6915 Remote Similarity NPD5038 Approved
0.6915 Remote Similarity NPD3863 Clinical (unspecified phase)
0.6915 Remote Similarity NPD5037 Approved
0.6906 Remote Similarity NPD2897 Discontinued
0.6905 Remote Similarity NPD8319 Approved
0.6905 Remote Similarity NPD8320 Phase 1
0.6904 Remote Similarity NPD4956 Approved
0.6902 Remote Similarity NPD7212 Phase 2
0.6902 Remote Similarity NPD7213 Phase 3
0.6897 Remote Similarity NPD5525 Clinical (unspecified phase)
0.6895 Remote Similarity NPD5353 Approved
0.6895 Remote Similarity NPD8155 Clinical (unspecified phase)
0.6891 Remote Similarity NPD6107 Approved
0.6885 Remote Similarity NPD3692 Discontinued
0.6885 Remote Similarity NPD2677 Approved
0.6884 Remote Similarity NPD3936 Clinical (unspecified phase)
0.6882 Remote Similarity NPD6662 Clinical (unspecified phase)
0.6882 Remote Similarity NPD4727 Phase 1
0.6878 Remote Similarity NPD37 Approved
0.6875 Remote Similarity NPD6776 Approved
0.6875 Remote Similarity NPD6778 Approved
0.6875 Remote Similarity NPD6782 Approved
0.6875 Remote Similarity NPD6781 Approved
0.6875 Remote Similarity NPD6777 Approved
0.6875 Remote Similarity NPD6779 Approved
0.6875 Remote Similarity NPD6780 Approved
0.6872 Remote Similarity NPD6166 Phase 2
0.6872 Remote Similarity NPD4575 Clinical (unspecified phase)
0.6872 Remote Similarity NPD6167 Clinical (unspecified phase)
0.6872 Remote Similarity NPD6168 Clinical (unspecified phase)
0.6868 Remote Similarity NPD5177 Phase 3
0.6865 Remote Similarity NPD7447 Phase 1
0.6859 Remote Similarity NPD4966 Approved
0.6859 Remote Similarity NPD4967 Phase 2
0.6859 Remote Similarity NPD3882 Suspended
0.6859 Remote Similarity NPD4581 Clinical (unspecified phase)
0.6859 Remote Similarity NPD5019 Clinical (unspecified phase)
0.6859 Remote Similarity NPD6788 Approved
0.6859 Remote Similarity NPD4965 Approved
0.6853 Remote Similarity NPD3933 Discontinued
0.6848 Remote Similarity NPD6666 Approved
0.6848 Remote Similarity NPD6667 Approved
0.6842 Remote Similarity NPD2978 Approved
0.6842 Remote Similarity NPD2977 Approved
0.6842 Remote Similarity NPD4585 Approved

  Bioactivity similarity: Similar Natural Products in NPASS

Bioactivity similarity was calculated based on bioactivity descriptors of compounds. The bioactivity descriptors were calculated by a recently developed AI algorithm Chemical Checker (CC) [Nature Biotechnology, 38:1087–1096, 2020; Nature Communications, 12:3932, 2021], which evaluated bioactivity similarities at five levels:
A: chemistry similarity;
B: biological targets similarity;
C: networks similarity;
D: cell-based bioactivity similarity;
E: similarity based on clinical data.

Those 5 categories of CC bioactivity descriptors were calculated and then subjected to manifold projection using UMAP algorithm, to project all NPs on a 2-Dimensional space. The current NP was highlighted with a small circle in the 2-D map. Below figures: left-to-right, A-to-E.

A: chemistry similarity
B: biological targets similarity
C: networks similarity
D: cell-based bioactivity similarity
E: similarity based on clinical data