Structure

Physi-Chem Properties

Molecular Weight:  321.14
Volume:  336.526
LogP:  3.962
LogD:  3.514
LogS:  -4.707
# Rotatable Bonds:  1
TPSA:  40.46
# H-Bond Aceptor:  4
# H-Bond Donor:  0
# Rings:  4
# Heavy Atoms:  4

MedChem Properties

QED Drug-Likeness Score:  0.639
Synthetic Accessibility Score:  2.666
Fsp3:  0.25
Lipinski Rule-of-5:  Accepted
Pfizer Rule:  Rejected
GSK Rule:  Accepted
BMS Rule:  0
Golden Triangle Rule:  Accepted
Chelating Alert:  0
PAINS Alert:  0

ADMET Properties (ADMETlab2.0)

ADMET: Absorption

Caco-2 Permeability:  -4.654
MDCK Permeability:  2.171255437133368e-05
Pgp-inhibitor:  0.866
Pgp-substrate:  0.003
Human Intestinal Absorption (HIA):  0.036
20% Bioavailability (F20%):  0.01
30% Bioavailability (F30%):  0.19

ADMET: Distribution

Blood-Brain-Barrier Penetration (BBB):  0.612
Plasma Protein Binding (PPB):  96.66524505615234%
Volume Distribution (VD):  0.543
Pgp-substrate:  1.7379181385040283%

ADMET: Metabolism

CYP1A2-inhibitor:  0.95
CYP1A2-substrate:  0.936
CYP2C19-inhibitor:  0.94
CYP2C19-substrate:  0.792
CYP2C9-inhibitor:  0.879
CYP2C9-substrate:  0.931
CYP2D6-inhibitor:  0.871
CYP2D6-substrate:  0.868
CYP3A4-inhibitor:  0.853
CYP3A4-substrate:  0.486

ADMET: Excretion

Clearance (CL):  3.26
Half-life (T1/2):  0.16

ADMET: Toxicity

hERG Blockers:  0.052
Human Hepatotoxicity (H-HT):  0.861
Drug-inuced Liver Injury (DILI):  0.496
AMES Toxicity:  0.908
Rat Oral Acute Toxicity:  0.692
Maximum Recommended Daily Dose:  0.894
Skin Sensitization:  0.431
Carcinogencity:  0.959
Eye Corrosion:  0.004
Eye Irritation:  0.743
Respiratory Toxicity:  0.93

Download Data

Data Type Select
General Info & Identifiers & Properties  
Structure MOL file  
Source Organisms  
Biological Activities  
Similar NPs/Drugs  

  Natural Product: NPC234933

Natural Product ID:  NPC234933
Common Name*:   Acronine
IUPAC Name:   6-methoxy-3,3,12-trimethylpyrano[2,3-c]acridin-7-one
Synonyms:   Acronine; Compound 42339
Standard InCHIKey:  SMPZPKRDRQOOHT-UHFFFAOYSA-N
Standard InCHI:  InChI=1S/C20H19NO3/c1-20(2)10-9-13-15(24-20)11-16(23-4)17-18(13)21(3)14-8-6-5-7-12(14)19(17)22/h5-11H,1-4H3
SMILES:  COc1cc2OC(C)(C)C=Cc2c2c1c(=O)c1c(n2C)cccc1
Synthetic Gene Cluster:   n.a.
ChEMBL Identifier:   CHEMBL285852
PubChem CID:   345512
Chemical Classification**:  
  • CHEMONTID:0000000 [Organic compounds]
    • [CHEMONTID:0000002] Organoheterocyclic compounds
      • [CHEMONTID:0001253] Quinolines and derivatives
        • [CHEMONTID:0001908] Benzoquinolines
          • [CHEMONTID:0000274] Acridines
            • [CHEMONTID:0001811] Acridones

*Note: the InCHIKey will be temporarily assigned as the "Common Name" if no IUPAC name or alternative short name is available.
**Note: the Chemical Classification was calculated by NPClassifier Version 1.5. Reference: PMID:34662515.

  Species Source

Organism ID Organism Name Taxonomy Level Family SuperKingdom Isolation Part Collection Location Collection Time Reference
NPO12980 Acronychia pedunculata Species Rutaceae Eukaryota n.a. n.a. n.a. PMID[12880321]
NPO20468 Sarcomelicope simplicifolia Species Rutaceae Eukaryota n.a. n.a. n.a. PMID[19191562]
NPO12980 Acronychia pedunculata Species Rutaceae Eukaryota n.a. bark n.a. PMID[22708987]
NPO12980 Acronychia pedunculata Species Rutaceae Eukaryota n.a. n.a. n.a. PMID[22708987]
NPO2715 Murraya paniculata Species Rutaceae Eukaryota n.a. leaf n.a. PMID[24354205]
NPO2715 Murraya paniculata Species Rutaceae Eukaryota n.a. twig n.a. PMID[24354205]
NPO12980 Acronychia pedunculata Species Rutaceae Eukaryota n.a. n.a. n.a. PMID[2614422]
NPO28126 Cordyceps militaris Species Cordycipitaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO27753 Chrysosplenium tosaense Species Saxifragaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO12980 Acronychia pedunculata Species Rutaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO2357 Acronychia baueri Species Rutaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO28830 Acronychia haplophylla Species Rutaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO2715 Murraya paniculata Species Rutaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO2715 Murraya paniculata Species Rutaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO28126 Cordyceps militaris Species Cordycipitaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO2357 Acronychia baueri Species Rutaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO28830 Acronychia haplophylla Species Rutaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO27753 Chrysosplenium tosaense Species Saxifragaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO12980 Acronychia pedunculata Species Rutaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO2715 Murraya paniculata Species Rutaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO2357 Acronychia baueri Species Rutaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO28830 Acronychia haplophylla Species Rutaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO12980 Acronychia pedunculata Species Rutaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO2715 Murraya paniculata Species Rutaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO28126 Cordyceps militaris Species Cordycipitaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO2357 Acronychia baueri Species Rutaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO27605 Dipteris conjugata Species Dipteridaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO27753 Chrysosplenium tosaense Species Saxifragaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO28830 Acronychia haplophylla Species Rutaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO12980 Acronychia pedunculata Species Rutaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO2715 Murraya paniculata Species Rutaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO20468 Sarcomelicope simplicifolia Species Rutaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO3659 Limonium bicolor Species Plumbaginaceae Eukaryota n.a. n.a. n.a. Database[UNPD]

☑ Note for Reference:
In addition to directly collecting NP source organism data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated them from below databases:
UNPD: Universal Natural Products Database [PMID: 23638153].
StreptomeDB: a database of streptomycetes natural products [PMID: 33051671].
TM-MC: a database of medicinal materials and chemical compounds in Northeast Asian traditional medicine [PMID: 26156871].
TCM@Taiwan: a Traditional Chinese Medicine database [PMID: 21253603].
TCMID: a Traditional Chinese Medicine database [PMID: 29106634].
TCMSP: The traditional Chinese medicine systems pharmacology database and analysis platform [PMID: 24735618].
HerDing: a herb recommendation system to treat diseases using genes and chemicals [PMID: 26980517].
MetaboLights: a metabolomics database [PMID: 27010336].
FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].

  NP Quantity Composition/Concentration

Organism ID NP ID Organism Material Preparation Organism Part NP Quantity (Standard) NP Quantity (Minimum) NP Quantity (Maximum) Quantity Unit Reference

☑ Note for Reference:
In addition to directly collecting NP quantitative data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated NP quantitative records for specific NP domains (e.g., NPS from foods or herbs) from domain-specific databases. These databases include:
DUKE: Dr. Duke's Phytochemical and Ethnobotanical Databases.
PHENOL EXPLORER: is the first comprehensive database on polyphenol content in foods [PMID: 24103452], its homepage can be accessed at here.
FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].

  Biological Activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference
NPT137 Cell Line L1210 Mus musculus IC50 = 19900.0 nM PMID[575264]
NPT137 Cell Line L1210 Mus musculus IC50 = 27000.0 nM PMID[575265]
NPT81 Cell Line A549 Homo sapiens IC50 > 100000.0 nM PMID[575265]
NPT139 Cell Line HT-29 Homo sapiens IC50 > 100000.0 nM PMID[575265]
NPT393 Cell Line HCT-116 Homo sapiens IC50 > 100000.0 nM PMID[575265]
NPT5369 Cell Line HRT-18 cell line IC50 > 100000.0 nM PMID[575265]
NPT81 Cell Line A549 Homo sapiens IC50 > 100000.0 nM PMID[575266]
NPT139 Cell Line HT-29 Homo sapiens IC50 > 100000.0 nM PMID[575266]
NPT137 Cell Line L1210 Mus musculus IC50 = 27000.0 nM PMID[575266]
NPT116 Cell Line HL-60 Homo sapiens IC50 = 26200.0 nM PMID[575267]
NPT137 Cell Line L1210 Mus musculus IC50 = 24100.0 nM PMID[575268]
NPT168 Cell Line P388 Mus musculus Activity = 125.0 % PMID[575268]
NPT730 Cell Line MC-38 Mus musculus Activity = 4.0 % PMID[575268]
NPT116 Cell Line HL-60 Homo sapiens IC50 = 26200.0 nM PMID[575269]
NPT137 Cell Line L1210 Mus musculus IC50 = 23000.0 nM PMID[575270]
NPT1178 Cell Line KB 3-1 Homo sapiens IC50 = 3700.0 nM PMID[575270]
NPT459 Individual Protein Human immunodeficiency virus type 1 reverse transcriptase Human immunodeficiency virus 1 IC50 > 200.0 ug.mL-1 PMID[575272]
NPT137 Cell Line L1210 Mus musculus IC50 = 25000.0 nM PMID[575273]
NPT168 Cell Line P388 Mus musculus T/C = 125.0 % PMID[575273]
NPT137 Cell Line L1210 Mus musculus IC50 = 23000.0 nM PMID[575274]
NPT137 Cell Line L1210 Mus musculus IC50 = 10400.0 nM PMID[575275]
NPT168 Cell Line P388 Mus musculus T/C = 125.0 % PMID[575276]
NPT730 Cell Line MC-38 Mus musculus T/C = 4.0 % PMID[575276]
NPT137 Cell Line L1210 Mus musculus IC50 = 10400.0 nM PMID[575276]
NPT941 Cell Line HaCaT Homo sapiens IC50 = 3200.0 nM PMID[575277]
NPT941 Cell Line HaCaT Homo sapiens Activity = 70.4 mU/ml PMID[575277]
NPT368 Cell Line SN12C Homo sapiens GI50 n.a. 100000.0 nM PMID[575278]
NPT369 Cell Line ACHN Homo sapiens GI50 n.a. 45394.16 nM PMID[575278]
NPT370 Cell Line NCI-H23 Homo sapiens GI50 n.a. 33419.5 nM PMID[575278]
NPT371 Cell Line UO-31 Homo sapiens GI50 n.a. 49888.45 nM PMID[575278]
NPT372 Cell Line HOP-92 Homo sapiens GI50 n.a. 100000.0 nM PMID[575278]
NPT116 Cell Line HL-60 Homo sapiens GI50 n.a. 60673.63 nM PMID[575278]
NPT374 Cell Line SF-539 Homo sapiens GI50 n.a. 37844.26 nM PMID[575278]
NPT373 Cell Line SK-MEL-5 Homo sapiens GI50 n.a. 100000.0 nM PMID[575278]
NPT375 Cell Line Malme-3M Homo sapiens GI50 n.a. 100000.0 nM PMID[575278]
NPT111 Cell Line K562 Homo sapiens GI50 n.a. 52119.47 nM PMID[575278]
NPT377 Cell Line OVCAR-3 Homo sapiens GI50 n.a. 100000.0 nM PMID[575278]
NPT112 Cell Line MOLT-4 Homo sapiens GI50 n.a. 16180.8 nM PMID[575278]
NPT379 Cell Line HOP-62 Homo sapiens GI50 n.a. 46881.34 nM PMID[575278]
NPT380 Cell Line U-251 Homo sapiens GI50 n.a. 100000.0 nM PMID[575278]
NPT381 Cell Line OVCAR-8 Homo sapiens GI50 n.a. 100000.0 nM PMID[575278]
NPT382 Cell Line OVCAR-5 Homo sapiens GI50 n.a. 100000.0 nM PMID[575278]
NPT572 Cell Line DMS-273 Homo sapiens GI50 n.a. 23334.58 nM PMID[575278]
NPT383 Cell Line SNB-19 Homo sapiens GI50 n.a. 100000.0 nM PMID[575278]
NPT385 Cell Line SR Homo sapiens GI50 n.a. 885.12 nM PMID[575278]
NPT384 Cell Line TK-10 Homo sapiens GI50 n.a. 100000.0 nM PMID[575278]
NPT323 Cell Line SW-620 Homo sapiens GI50 n.a. 100000.0 nM PMID[575278]
NPT573 Cell Line M19-MEL Homo sapiens GI50 n.a. 72276.98 nM PMID[575278]
NPT386 Cell Line KM12 Homo sapiens GI50 n.a. 100000.0 nM PMID[575278]
NPT455 Cell Line NCI-H522 Homo sapiens GI50 n.a. 18450.15 nM PMID[575278]
NPT574 Cell Line XF498 Homo sapiens GI50 n.a. 49659.23 nM PMID[575278]
NPT387 Cell Line M14 Homo sapiens GI50 n.a. 100000.0 nM PMID[575278]
NPT388 Cell Line NCI-H322M Homo sapiens GI50 n.a. 100000.0 nM PMID[575278]
NPT389 Cell Line RPMI-8226 Homo sapiens GI50 n.a. 27925.44 nM PMID[575278]
NPT456 Cell Line OVCAR-4 Homo sapiens GI50 n.a. 100000.0 nM PMID[575278]
NPT390 Cell Line LOX IMVI Homo sapiens GI50 n.a. 100000.0 nM PMID[575278]
NPT147 Cell Line SK-MEL-2 Homo sapiens GI50 n.a. 100000.0 nM PMID[575278]
NPT575 Cell Line KM-20L2 Homo sapiens GI50 n.a. 49888.45 nM PMID[575278]
NPT81 Cell Line A549 Homo sapiens GI50 n.a. 100000.0 nM PMID[575278]
NPT392 Cell Line SNB-75 Homo sapiens GI50 n.a. 82603.79 nM PMID[575278]
NPT393 Cell Line HCT-116 Homo sapiens GI50 n.a. 100000.0 nM PMID[575278]
NPT148 Cell Line HCT-15 Homo sapiens GI50 n.a. 45289.76 nM PMID[575278]
NPT395 Cell Line SF-268 Homo sapiens GI50 n.a. 100000.0 nM PMID[575278]
NPT146 Cell Line SK-OV-3 Homo sapiens GI50 n.a. 100000.0 nM PMID[575278]
NPT731 Cell Line LXFL 529 Homo sapiens GI50 n.a. 93972.33 nM PMID[575278]
NPT576 Cell Line DMS-114 Homo sapiens GI50 n.a. 45394.16 nM PMID[575278]
NPT397 Cell Line NCI-H460 Homo sapiens GI50 n.a. 43551.19 nM PMID[575278]
NPT398 Cell Line UACC-62 Homo sapiens GI50 n.a. 96161.23 nM PMID[575278]
NPT308 Cell Line CAKI-1 Homo sapiens GI50 n.a. 100000.0 nM PMID[575278]
NPT458 Cell Line IGROV-1 Homo sapiens GI50 n.a. 58479.01 nM PMID[575278]
NPT399 Cell Line SF-295 Homo sapiens GI50 n.a. 32284.94 nM PMID[575278]
NPT401 Cell Line 786-0 Homo sapiens GI50 n.a. 70957.78 nM PMID[575278]
NPT403 Cell Line UACC-257 Homo sapiens GI50 n.a. 100000.0 nM PMID[575278]
NPT578 Cell Line SNB-78 Homo sapiens GI50 n.a. 100000.0 nM PMID[575278]
NPT579 Cell Line DLD-1 Homo sapiens GI50 n.a. 100000.0 nM PMID[575278]
NPT404 Cell Line CCRF-CEM Homo sapiens GI50 n.a. 79067.86 nM PMID[575278]
NPT139 Cell Line HT-29 Homo sapiens GI50 n.a. 56885.29 nM PMID[575278]
NPT405 Cell Line NCI-H226 Homo sapiens GI50 n.a. 100000.0 nM PMID[575278]
NPT170 Cell Line SK-MEL-28 Homo sapiens GI50 n.a. 48640.72 nM PMID[575278]
NPT406 Cell Line RXF 393 Homo sapiens GI50 n.a. 25061.09 nM PMID[575278]
NPT407 Cell Line COLO 205 Homo sapiens GI50 n.a. 100000.0 nM PMID[575278]
NPT732 Cell Line HOP-18 Homo sapiens GI50 n.a. 55975.76 nM PMID[575278]
NPT137 Cell Line L1210 Mus musculus IC50 = 23000.0 nM PMID[575279]
NPT137 Cell Line L1210 Mus musculus IC50 = 21000.0 nM PMID[575280]
NPT32 Organism Mus musculus Mus musculus T/C (survival) = 125.0 % PMID[575264]
NPT1881 Uncleic Acid Calf thymus DNA Bos taurus EC50 = 270400.0 nM PMID[575265]
NPT1881 Uncleic Acid Calf thymus DNA Bos taurus EC50 = 82000.0 nM PMID[575266]
NPT1881 Uncleic Acid Calf thymus DNA Bos taurus Activity < 30.0 % PMID[575271]
NPT20529 NON-MOLECULAR NON-PROTEIN TARGET n.a. IC50 = 3700.0 nM PMID[575274]
NPT1 Others Radical scavenging activity EC50 > 500000.0 nM PMID[575277]
NPT20529 NON-MOLECULAR NON-PROTEIN TARGET n.a. IC50 = 3700.0 nM PMID[575279]

☑ Note for Activity Records:
☉ The quantitative biological activities were primarily integrated from ChEMBL (Version-30) database and were also directly collected from PubMed literature. PubMed PMID was provided as the reference link for each activity record.

  Chemically structural similarity: I. Similar Active Natural Products in NPASS

Top-200 similar NPs were calculated against the active-NP-set (includes 4,3285 NPs with experimentally-derived bioactivity available in NPASS)

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules. Tc lies between [0, 1] where '1' indicates the highest similarity. What is Tanimoto coefficient

●  The left chart: Distribution of similarity level between NPC234933 and all remaining natural products in the NPASS database.
●  The right table: Most similar natural products (Tc>=0.56 or Top200).

Similarity Score Similarity Level Natural Product ID
0.9667 High Similarity NPC15987
0.9609 High Similarity NPC241263
0.9247 High Similarity NPC198160
0.9239 High Similarity NPC288759
0.9218 High Similarity NPC1820
0.9167 High Similarity NPC114039
0.9167 High Similarity NPC206109
0.914 High Similarity NPC313112
0.914 High Similarity NPC301292
0.9105 High Similarity NPC116178
0.9058 High Similarity NPC30749
0.9058 High Similarity NPC321166
0.9058 High Similarity NPC217903
0.9005 High Similarity NPC305542
0.8743 High Similarity NPC212123
0.8737 High Similarity NPC329830
0.866 High Similarity NPC218303
0.8622 High Similarity NPC176113
0.8611 High Similarity NPC298320
0.8522 High Similarity NPC13249
0.8469 Intermediate Similarity NPC295479
0.8469 Intermediate Similarity NPC220241
0.8466 Intermediate Similarity NPC299582
0.8384 Intermediate Similarity NPC268223
0.8325 Intermediate Similarity NPC474366
0.822 Intermediate Similarity NPC170333
0.8218 Intermediate Similarity NPC87560
0.8218 Intermediate Similarity NPC134702
0.8218 Intermediate Similarity NPC195120
0.8218 Intermediate Similarity NPC182853
0.8162 Intermediate Similarity NPC327005
0.8159 Intermediate Similarity NPC148391
0.8115 Intermediate Similarity NPC471825
0.8098 Intermediate Similarity NPC118189
0.8098 Intermediate Similarity NPC7560
0.8049 Intermediate Similarity NPC118154
0.8049 Intermediate Similarity NPC157983
0.802 Intermediate Similarity NPC114468
0.802 Intermediate Similarity NPC41216
0.801 Intermediate Similarity NPC76478
0.8 Intermediate Similarity NPC204867
0.798 Intermediate Similarity NPC133156
0.798 Intermediate Similarity NPC2905
0.7857 Intermediate Similarity NPC285254
0.7596 Intermediate Similarity NPC93653
0.7536 Intermediate Similarity NPC469439
0.7526 Intermediate Similarity NPC9475
0.7526 Intermediate Similarity NPC127082
0.7524 Intermediate Similarity NPC25961
0.75 Intermediate Similarity NPC45389
0.7458 Intermediate Similarity NPC472409
0.7448 Intermediate Similarity NPC85613
0.7386 Intermediate Similarity NPC157855
0.7358 Intermediate Similarity NPC5167
0.7348 Intermediate Similarity NPC144691
0.7345 Intermediate Similarity NPC17848
0.7333 Intermediate Similarity NPC59522
0.733 Intermediate Similarity NPC161196
0.7323 Intermediate Similarity NPC469437
0.7303 Intermediate Similarity NPC11566
0.7292 Intermediate Similarity NPC129578
0.7265 Intermediate Similarity NPC151171
0.7238 Intermediate Similarity NPC38219
0.7235 Intermediate Similarity NPC115588
0.7231 Intermediate Similarity NPC309692
0.7222 Intermediate Similarity NPC103362
0.7222 Intermediate Similarity NPC52576
0.7213 Intermediate Similarity NPC110303
0.7213 Intermediate Similarity NPC23728
0.7212 Intermediate Similarity NPC308943
0.7208 Intermediate Similarity NPC49184
0.72 Intermediate Similarity NPC229646
0.7198 Intermediate Similarity NPC179970
0.7195 Intermediate Similarity NPC476429
0.7191 Intermediate Similarity NPC259685
0.7188 Intermediate Similarity NPC73280
0.7182 Intermediate Similarity NPC147145
0.7182 Intermediate Similarity NPC11561
0.7182 Intermediate Similarity NPC226636
0.7176 Intermediate Similarity NPC198503
0.7175 Intermediate Similarity NPC46869
0.7174 Intermediate Similarity NPC160821
0.7174 Intermediate Similarity NPC132592
0.7167 Intermediate Similarity NPC150522
0.7167 Intermediate Similarity NPC475680
0.7167 Intermediate Similarity NPC305355
0.7159 Intermediate Similarity NPC292998
0.7158 Intermediate Similarity NPC312973
0.7158 Intermediate Similarity NPC83357
0.7158 Intermediate Similarity NPC246948
0.7158 Intermediate Similarity NPC54577
0.7158 Intermediate Similarity NPC142405
0.7158 Intermediate Similarity NPC67805
0.7158 Intermediate Similarity NPC475052
0.7158 Intermediate Similarity NPC470647
0.7158 Intermediate Similarity NPC176229
0.7158 Intermediate Similarity NPC88964
0.7158 Intermediate Similarity NPC267375
0.7158 Intermediate Similarity NPC301276
0.7158 Intermediate Similarity NPC111786
0.7158 Intermediate Similarity NPC195621
0.7158 Intermediate Similarity NPC20488
0.7158 Intermediate Similarity NPC214774
0.7157 Intermediate Similarity NPC112937
0.7157 Intermediate Similarity NPC100863
0.715 Intermediate Similarity NPC208890
0.7143 Intermediate Similarity NPC17262
0.7143 Intermediate Similarity NPC106985
0.7143 Intermediate Similarity NPC219915
0.7143 Intermediate Similarity NPC284424
0.7143 Intermediate Similarity NPC18585
0.7143 Intermediate Similarity NPC166138
0.7135 Intermediate Similarity NPC254741
0.7127 Intermediate Similarity NPC110969
0.7127 Intermediate Similarity NPC147688
0.7127 Intermediate Similarity NPC205006
0.7127 Intermediate Similarity NPC156590
0.7127 Intermediate Similarity NPC64908
0.7127 Intermediate Similarity NPC118840
0.712 Intermediate Similarity NPC237635
0.712 Intermediate Similarity NPC283234
0.712 Intermediate Similarity NPC201731
0.712 Intermediate Similarity NPC97716
0.712 Intermediate Similarity NPC296998
0.712 Intermediate Similarity NPC104406
0.712 Intermediate Similarity NPC473077
0.712 Intermediate Similarity NPC79469
0.712 Intermediate Similarity NPC24673
0.7119 Intermediate Similarity NPC125269
0.7115 Intermediate Similarity NPC268077
0.7104 Intermediate Similarity NPC234629
0.7104 Intermediate Similarity NPC311741
0.7104 Intermediate Similarity NPC209040
0.7102 Intermediate Similarity NPC473655
0.7102 Intermediate Similarity NPC101294
0.7094 Intermediate Similarity NPC264938
0.7092 Intermediate Similarity NPC283810
0.7088 Intermediate Similarity NPC62840
0.7088 Intermediate Similarity NPC299080
0.7088 Intermediate Similarity NPC144499
0.7088 Intermediate Similarity NPC293852
0.7088 Intermediate Similarity NPC217083
0.7088 Intermediate Similarity NPC78803
0.7088 Intermediate Similarity NPC59739
0.7088 Intermediate Similarity NPC214236
0.7083 Intermediate Similarity NPC298436
0.7081 Intermediate Similarity NPC161191
0.7081 Intermediate Similarity NPC266572
0.7081 Intermediate Similarity NPC6511
0.7081 Intermediate Similarity NPC296869
0.7079 Intermediate Similarity NPC99854
0.7079 Intermediate Similarity NPC473004
0.7073 Intermediate Similarity NPC193906
0.7073 Intermediate Similarity NPC83019
0.7073 Intermediate Similarity NPC17677
0.7073 Intermediate Similarity NPC23080
0.7073 Intermediate Similarity NPC71124
0.7072 Intermediate Similarity NPC261227
0.7072 Intermediate Similarity NPC159275
0.7072 Intermediate Similarity NPC241100
0.7072 Intermediate Similarity NPC171094
0.7072 Intermediate Similarity NPC69769
0.7072 Intermediate Similarity NPC235239
0.7072 Intermediate Similarity NPC270883
0.7072 Intermediate Similarity NPC172986
0.7065 Intermediate Similarity NPC477955
0.7064 Intermediate Similarity NPC251071
0.7049 Intermediate Similarity NPC149026
0.7049 Intermediate Similarity NPC39329
0.7049 Intermediate Similarity NPC214166
0.7049 Intermediate Similarity NPC164980
0.7049 Intermediate Similarity NPC221432
0.7049 Intermediate Similarity NPC91560
0.7049 Intermediate Similarity NPC150408
0.7049 Intermediate Similarity NPC175504
0.7049 Intermediate Similarity NPC143896
0.7049 Intermediate Similarity NPC316816
0.7049 Intermediate Similarity NPC478086
0.7049 Intermediate Similarity NPC75049
0.7049 Intermediate Similarity NPC310130
0.7049 Intermediate Similarity NPC68104
0.7049 Intermediate Similarity NPC169591
0.7049 Intermediate Similarity NPC257097
0.7048 Intermediate Similarity NPC119134
0.7048 Intermediate Similarity NPC478075
0.7045 Intermediate Similarity NPC476436
0.7045 Intermediate Similarity NPC278556
0.7044 Intermediate Similarity NPC254957
0.7043 Intermediate Similarity NPC164299
0.7039 Intermediate Similarity NPC5374
0.7033 Intermediate Similarity NPC87714
0.7033 Intermediate Similarity NPC282300
0.7033 Intermediate Similarity NPC3188
0.7033 Intermediate Similarity NPC22467
0.703 Intermediate Similarity NPC22476
0.7027 Intermediate Similarity NPC218300
0.7027 Intermediate Similarity NPC471285
0.7027 Intermediate Similarity NPC282335
0.7024 Intermediate Similarity NPC204580
0.7023 Intermediate Similarity NPC470001

  Chemically structural similarity: II. Similar Clinical/Approved Drugs

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules.

●  The left chart: Distribution of similarity level between NPC234933 and all drugs/candidates.
●  The right table: Most similar clinical/approved drugs (Tc>=0.56 or Top200).

Similarity Score Similarity Level Drug ID Developmental Stage
0.8205 Intermediate Similarity NPD7064 Clinical (unspecified phase)
0.8 Intermediate Similarity NPD2899 Discontinued
0.799 Intermediate Similarity NPD3949 Clinical (unspecified phase)
0.7817 Intermediate Similarity NPD3297 Approved
0.773 Intermediate Similarity NPD5183 Approved
0.773 Intermediate Similarity NPD5186 Approved
0.7711 Intermediate Similarity NPD3298 Approved
0.7562 Intermediate Similarity NPD7566 Clinical (unspecified phase)
0.755 Intermediate Similarity NPD6874 Approved
0.7538 Intermediate Similarity NPD6608 Clinical (unspecified phase)
0.7488 Intermediate Similarity NPD5496 Approved
0.7434 Intermediate Similarity NPD6525 Clinical (unspecified phase)
0.7371 Intermediate Similarity NPD4419 Clinical (unspecified phase)
0.7358 Intermediate Similarity NPD6198 Phase 1
0.7344 Intermediate Similarity NPD5521 Clinical (unspecified phase)
0.7306 Intermediate Similarity NPD5900 Clinical (unspecified phase)
0.7277 Intermediate Similarity NPD2246 Approved
0.7277 Intermediate Similarity NPD2248 Approved
0.725 Intermediate Similarity NPD5937 Approved
0.7231 Intermediate Similarity NPD6104 Discontinued
0.7212 Intermediate Similarity NPD7584 Approved
0.7202 Intermediate Similarity NPD5940 Clinical (unspecified phase)
0.7189 Intermediate Similarity NPD6585 Discontinued
0.7186 Intermediate Similarity NPD5620 Clinical (unspecified phase)
0.7179 Intermediate Similarity NPD6654 Clinical (unspecified phase)
0.7167 Intermediate Similarity NPD8461 Discontinued
0.7165 Intermediate Similarity NPD3793 Phase 3
0.7151 Intermediate Similarity NPD5889 Approved
0.7151 Intermediate Similarity NPD5890 Approved
0.7135 Intermediate Similarity NPD2796 Approved
0.7121 Intermediate Similarity NPD6021 Clinical (unspecified phase)
0.7108 Intermediate Similarity NPD7238 Clinical (unspecified phase)
0.7108 Intermediate Similarity NPD6621 Clinical (unspecified phase)
0.7104 Intermediate Similarity NPD4981 Phase 2
0.7094 Intermediate Similarity NPD4360 Phase 2
0.7094 Intermediate Similarity NPD4363 Phase 3
0.7085 Intermediate Similarity NPD6625 Approved
0.708 Intermediate Similarity NPD4613 Phase 2
0.7053 Intermediate Similarity NPD6533 Clinical (unspecified phase)
0.7024 Intermediate Similarity NPD4979 Clinical (unspecified phase)
0.7019 Intermediate Similarity NPD956 Clinical (unspecified phase)
0.7017 Intermediate Similarity NPD2654 Approved
0.7011 Intermediate Similarity NPD7410 Clinical (unspecified phase)
0.7005 Intermediate Similarity NPD6293 Clinical (unspecified phase)
0.6982 Remote Similarity NPD7654 Discontinued
0.6976 Remote Similarity NPD4362 Clinical (unspecified phase)
0.6976 Remote Similarity NPD4361 Phase 2
0.6974 Remote Similarity NPD3446 Phase 1
0.6974 Remote Similarity NPD6790 Phase 1
0.6971 Remote Similarity NPD6321 Discontinued
0.6965 Remote Similarity NPD4515 Suspended
0.6963 Remote Similarity NPD955 Approved
0.6961 Remote Similarity NPD4539 Phase 1
0.6952 Remote Similarity NPD6357 Discontinued
0.6949 Remote Similarity NPD3140 Approved
0.6949 Remote Similarity NPD3142 Approved
0.6948 Remote Similarity NPD5860 Discontinued
0.6948 Remote Similarity NPD5726 Clinical (unspecified phase)
0.694 Remote Similarity NPD3295 Clinical (unspecified phase)
0.6938 Remote Similarity NPD7627 Approved
0.6938 Remote Similarity NPD7626 Approved
0.6919 Remote Similarity NPD4378 Clinical (unspecified phase)
0.6916 Remote Similarity NPD4846 Phase 2
0.6908 Remote Similarity NPD5071 Phase 2
0.6897 Remote Similarity NPD5896 Clinical (unspecified phase)
0.6887 Remote Similarity NPD7583 Approved
0.6878 Remote Similarity NPD7411 Suspended
0.6878 Remote Similarity NPD2366 Approved
0.6872 Remote Similarity NPD6250 Discontinued
0.687 Remote Similarity NPD1483 Discontinued
0.6869 Remote Similarity NPD4997 Clinical (unspecified phase)
0.6856 Remote Similarity NPD2247 Approved
0.6856 Remote Similarity NPD6457 Approved
0.6856 Remote Similarity NPD2249 Approved
0.6854 Remote Similarity NPD7585 Approved
0.6847 Remote Similarity NPD3925 Approved
0.6847 Remote Similarity NPD1898 Discontinued
0.6842 Remote Similarity NPD7501 Clinical (unspecified phase)
0.6834 Remote Similarity NPD6211 Clinical (unspecified phase)
0.6826 Remote Similarity NPD7417 Discontinued
0.6825 Remote Similarity NPD7597 Clinical (unspecified phase)
0.682 Remote Similarity NPD5417 Clinical (unspecified phase)
0.6818 Remote Similarity NPD3965 Phase 1
0.6818 Remote Similarity NPD6020 Phase 2
0.6818 Remote Similarity NPD3783 Clinical (unspecified phase)
0.6818 Remote Similarity NPD7858 Clinical (unspecified phase)
0.6816 Remote Similarity NPD7186 Phase 3
0.68 Remote Similarity NPD4952 Phase 3
0.6792 Remote Similarity NPD4467 Phase 2
0.6792 Remote Similarity NPD4465 Phase 2
0.6792 Remote Similarity NPD5102 Clinical (unspecified phase)
0.6786 Remote Similarity NPD3899 Clinical (unspecified phase)
0.6786 Remote Similarity NPD5242 Approved
0.6779 Remote Similarity NPD5515 Phase 2
0.6777 Remote Similarity NPD5006 Approved
0.6777 Remote Similarity NPD5005 Approved
0.6777 Remote Similarity NPD7803 Approved
0.6776 Remote Similarity NPD1549 Phase 2
0.677 Remote Similarity NPD6962 Phase 2
0.6768 Remote Similarity NPD5603 Clinical (unspecified phase)
0.6762 Remote Similarity NPD7255 Clinical (unspecified phase)
0.6759 Remote Similarity NPD1945 Phase 1
0.6759 Remote Similarity NPD6567 Clinical (unspecified phase)
0.6754 Remote Similarity NPD6844 Discontinued
0.6754 Remote Similarity NPD7577 Discontinued
0.6737 Remote Similarity NPD4380 Phase 2
0.6735 Remote Similarity NPD4724 Clinical (unspecified phase)
0.6729 Remote Similarity NPD7043 Discontinued
0.6728 Remote Similarity NPD7225 Discontinued
0.6727 Remote Similarity NPD1926 Approved
0.6721 Remote Similarity NPD1552 Clinical (unspecified phase)
0.6721 Remote Similarity NPD1550 Clinical (unspecified phase)
0.672 Remote Similarity NPD814 Clinical (unspecified phase)
0.6719 Remote Similarity NPD7096 Clinical (unspecified phase)
0.6719 Remote Similarity NPD7819 Suspended
0.6714 Remote Similarity NPD8285 Discontinued
0.6711 Remote Similarity NPD4373 Phase 2
0.6711 Remote Similarity NPD6741 Clinical (unspecified phase)
0.67 Remote Similarity NPD7479 Phase 2
0.6698 Remote Similarity NPD4642 Clinical (unspecified phase)
0.6698 Remote Similarity NPD8027 Approved
0.6698 Remote Similarity NPD6593 Clinical (unspecified phase)
0.6698 Remote Similarity NPD2906 Approved
0.6698 Remote Similarity NPD6795 Clinical (unspecified phase)
0.6698 Remote Similarity NPD2907 Approved
0.6696 Remote Similarity NPD8067 Phase 3
0.6696 Remote Similarity NPD2300 Clinical (unspecified phase)
0.6684 Remote Similarity NPD8443 Clinical (unspecified phase)
0.6683 Remote Similarity NPD7893 Clinical (unspecified phase)
0.6682 Remote Similarity NPD683 Approved
0.6667 Remote Similarity NPD6801 Discontinued
0.6667 Remote Similarity NPD4668 Phase 2
0.6667 Remote Similarity NPD7559 Phase 2
0.6667 Remote Similarity NPD1240 Approved
0.6652 Remote Similarity NPD7279 Phase 2
0.6652 Remote Similarity NPD6199 Discontinued
0.6652 Remote Similarity NPD7278 Phase 2
0.6651 Remote Similarity NPD5143 Clinical (unspecified phase)
0.6651 Remote Similarity NPD3964 Approved
0.665 Remote Similarity NPD7546 Discontinued
0.665 Remote Similarity NPD3050 Clinical (unspecified phase)
0.665 Remote Similarity NPD5928 Phase 1
0.6649 Remote Similarity NPD1243 Approved
0.6638 Remote Similarity NPD5488 Discontinued
0.6638 Remote Similarity NPD7922 Phase 1
0.6636 Remote Similarity NPD5914 Approved
0.6636 Remote Similarity NPD6644 Discontinued
0.6636 Remote Similarity NPD3946 Clinical (unspecified phase)
0.6636 Remote Similarity NPD6744 Clinical (unspecified phase)
0.6635 Remote Similarity NPD7811 Phase 3
0.6635 Remote Similarity NPD7810 Phase 3
0.6634 Remote Similarity NPD5637 Discontinued
0.6634 Remote Similarity NPD3863 Clinical (unspecified phase)
0.6633 Remote Similarity NPD5494 Approved
0.6632 Remote Similarity NPD2393 Clinical (unspecified phase)
0.662 Remote Similarity NPD4082 Approved
0.662 Remote Similarity NPD7071 Clinical (unspecified phase)
0.6615 Remote Similarity NPD7075 Discontinued
0.6615 Remote Similarity NPD1307 Phase 2
0.6615 Remote Similarity NPD1309 Phase 2
0.6614 Remote Similarity NPD2737 Clinical (unspecified phase)
0.6612 Remote Similarity NPD7708 Approved
0.6612 Remote Similarity NPD1510 Phase 2
0.6606 Remote Similarity NPD6719 Approved
0.6605 Remote Similarity NPD7174 Clinical (unspecified phase)
0.6604 Remote Similarity NPD2339 Phase 3
0.6603 Remote Similarity NPD6861 Clinical (unspecified phase)
0.6601 Remote Similarity NPD7190 Clinical (unspecified phase)
0.6599 Remote Similarity NPD2821 Approved
0.6599 Remote Similarity NPD4986 Clinical (unspecified phase)
0.6598 Remote Similarity NPD5977 Approved
0.6598 Remote Similarity NPD5978 Approved
0.6596 Remote Similarity NPD6799 Approved
0.6593 Remote Similarity NPD7224 Discontinued
0.6593 Remote Similarity NPD7223 Discontinued
0.6593 Remote Similarity NPD1607 Approved
0.6592 Remote Similarity NPD5433 Clinical (unspecified phase)
0.6589 Remote Similarity NPD3802 Phase 3
0.6589 Remote Similarity NPD6478 Clinical (unspecified phase)
0.6588 Remote Similarity NPD4420 Approved
0.6584 Remote Similarity NPD6496 Clinical (unspecified phase)
0.6582 Remote Similarity NPD3252 Approved
0.6578 Remote Similarity NPD3912 Discontinued
0.6577 Remote Similarity NPD5632 Approved
0.6574 Remote Similarity NPD6296 Discontinued
0.657 Remote Similarity NPD7955 Approved
0.657 Remote Similarity NPD7956 Approved
0.6567 Remote Similarity NPD7560 Approved
0.6564 Remote Similarity NPD3259 Approved
0.6561 Remote Similarity NPD2335 Discontinued
0.6555 Remote Similarity NPD8367 Approved
0.6552 Remote Similarity NPD3386 Phase 2
0.6549 Remote Similarity NPD7545 Clinical (unspecified phase)
0.6546 Remote Similarity NPD2842 Clinical (unspecified phase)
0.6544 Remote Similarity NPD4859 Phase 1
0.6543 Remote Similarity NPD643 Clinical (unspecified phase)
0.6542 Remote Similarity NPD3515 Approved
0.6542 Remote Similarity NPD3516 Approved
0.6538 Remote Similarity NPD6656 Clinical (unspecified phase)
0.6531 Remote Similarity NPD4381 Clinical (unspecified phase)

  Bioactivity similarity: Similar Natural Products in NPASS

Bioactivity similarity was calculated based on bioactivity descriptors of compounds. The bioactivity descriptors were calculated by a recently developed AI algorithm Chemical Checker (CC) [Nature Biotechnology, 38:1087–1096, 2020; Nature Communications, 12:3932, 2021], which evaluated bioactivity similarities at five levels:
A: chemistry similarity;
B: biological targets similarity;
C: networks similarity;
D: cell-based bioactivity similarity;
E: similarity based on clinical data.

Those 5 categories of CC bioactivity descriptors were calculated and then subjected to manifold projection using UMAP algorithm, to project all NPs on a 2-Dimensional space. The current NP was highlighted with a small circle in the 2-D map. Below figures: left-to-right, A-to-E.

A: chemistry similarity
B: biological targets similarity
C: networks similarity
D: cell-based bioactivity similarity
E: similarity based on clinical data