Natural Product: NPC120773

Natural Product IDNPC120773
Common Name
?
The InCHIKey will be temporarily assigned as the "Common Name" if no IUPAC name or alternative short name is available.
SYSUVSWAEOKAPR-UAUVKVIMSA-N
IUPAC Name n.a.
Synonyms
Synthetic Gene Cluster n.a.
ChEMBL Identifier n.a.
PubChem CID n.a.
Chemical Classification
  • CHEMONTID:0000000 [Organic compounds]
    • [CHEMONTID:0000012] Lipids and lipid-like molecules
      • [CHEMONTID:0000258] Steroids and steroid derivatives
        • [CHEMONTID:0001013] Steroidal glycosides
          • [CHEMONTID:0002364] Steroidal saponins

The Chemical Classification was calculated by Classyfire, a software for chemical taxonomy calculation. Reference: DOI:10.1186/s13321-016-0174-y.

  Chemical Representations

Standard InCHIKey SYSUVSWAEOKAPR-UAUVKVIMSA-N
Standard InCHI InChI=1S/C58H96O27/c1-22(21-75-51-44(70)41(67)37(63)32(18-59)79-51)10-15-58(74-7)23(2)35-31(85-58)17-30-28-9-8-26-16-27(11-13-56(26,5)29(28)12-14-57(30,35)6)78-55-50(84-52-45(71)40(66)36(62)24(3)76-52)49(39(65)34(20-61)81-55)83-53-47(73)43(69)48(25(4)77-53)82-54-46(72)42(68)38(64)33(19-60)80-54/h8,22-25,27-55,59-73H,9-21H2,1-7H3/t22-,23-,24-,25-,27+,28+,29-,30-,31-,32-,33-,34-,35-,36-,37-,38-,39-,40+,41+,42+,43-,44-,45-,46-,47-,48-,49+,50-,51-,52+,53+,54+,55-,56+,57+,58+/m0/s1
SMILES C[C@@H](CC[C@@]1([C@@H](C)[C@H]2[C@H](C[C@H]3[C@@H]4CC=C5C[C@@H](CC[C@@]5(C)[C@H]4CC[C@@]23C)O[C@@H]2[C@H]([C@@H]([C@H]([C@H](CO)O2)O)O[C@@H]2[C@H]([C@@H]([C@H]([C@H](C)O2)O[C@@H]2[C@H]([C@@H]([C@H]([C@H](CO)O2)O)O)O)O)O)O[C@@H]2[C@H]([C@@H]([C@H]([C@H](C)O2)O)O)O)O1)OC)CO[C@@H]1[C@H]([C@@H]([C@H]([C@H](CO)O1)O)O)O

  Calculated Properties

Physi-Chem Properties

Molecular Weight:   1224.61 Volume:   1160.859
?
Van der Waals volume.
Dense:   1.055 LogP:   0.276
?
The logarithm of the n-octanol/water distribution coefficients.
logD7.4:   1.14
?
The logarithm of the n-octanol/water distribution coefficient at pH=7.4.
LogS:   -3.131
?
The logarithm of aqueous solubility value.
Rotatable Bonds:   18.0 Rigid Bonds:   54.0
TPSA:   414.21
?
Topological Polar Surface Area.
H-Bond Acceptor:   27.0
H-Bond Donor:   15.0 Rings:   10.0
Heavy Atoms:   27.0

MedChem Properties

QED Drug-Likeness Score:   0.059 GASA:   1.0
?
GASA represents the probability of being difficult to synthesize, ranging from 0 to 1.
Synthetic Accessibility Score:   7.318 Fsp3:   0.966
MCE-18:   199.789
?
MCE-18 stands for medicinal chemistry evolution.MCE-18≥45 is considered a suitable value.
Lipinski Rule-of-5:   Accepted
Pfizer Rule:   Rejected GSK Rule:   Accepted
Golden Triangle Rule:   Accepted BMS Rule:   1
Chelating Alert:   0 PAINS Alert:   0
Colloidal aggregators:   0.763 Fluc inhibitor:   0.0
?
The fluc inhibitor value is the probability of being fLuc inhibitors, within the range of 0 to 1.
Blue fluorescence:   0.002
?
The blue fluorescence value is the probability of being blue fluorescence, within the range of 0 to 1
Green fluorescence:   0.0
?
The green fluorescence value is the probability of being green fluorescence, within the range of 0 to 1
Reactive compounds:   0.415 Promiscuous compounds:   0.008

ADMET Properties (ADMETlab3.0)

ADMET: Absorption

Caco-2 Permeability:   -7.505 MDCK Permeability:   -4.728
Pgp-inhibitor:   0.0 Pgp-substrate:   0.987
PAMPA:   1.0
?
The experimental data for Peff was logarithmically transformed (logPeff). Molecules with log Peff values below 2.0 were classified as low-permeability (Category 0), while those with log Peff values exceeding 2.5 were classified as high-permeability (Category 1).
Human Intestinal Absorption (HIA):   0.991
20% Bioavailability (F20%):   0.465 30% Bioavailability (F30%):   1.0
50% Bioavailability (F50%):   0.998

ADMET: Distribution

Blood-Brain-Barrier Penetration (BBB):   0.023 MRP1:   0.001
Plasma Protein Binding (PPB):   56.79% Volume Distribution (VD):   -0.311
Fu: 25.856%
?
The fraction unbound in plasms.
OATP1B1 inhibitor:   1.0
OATP1B3 inhibitor:   1.0 BCRP inhibitor:   0.002
BSEP inhibitor:   0.0

ADMET: Metabolism

CYP1A2-inhibitor:   0.0 CYP1A2-substrate:   0.0
CYP2C19-inhibitor:   0.0 CYP2C19-substrate:   0.0
CYP2C9-inhibitor:   0.0 CYP2C9-substrate:   0.0
CYP2D6-inhibitor:   0.0 CYP2D6-substrate:   0.0
CYP3A4-inhibitor:   0.945 CYP3A4-substrate:   1.0
CYP2B6-substrate:   0.0 CYP2C8-inhibitor:   0.999
HLM stability:   0.0
?
Human liver microsomal (HLM) stability. Category 0: stable+ (HLM > 30 min); Category 1: unstable- (HLM ≤ 30 min). The output value is the probability of human liver microsomal instability, where a value closer to 1 indicates a higher likelihood of instability.

ADMET: Excretion

Clearance (CL):  -1.42 Half-life (T1/2):  3.983

ADMET: Toxicity

hERG Blockers:  0.0 hERG Blockers (10um):  0.005
Human Hepatotoxicity (H-HT):  0.414 Drug-induced Liver Injury (DILI):  0.942
AMES Toxicity:  0.787 Rat Oral Acute Toxicity:  0.0
Maximum Recommended Daily Dose:  0.0 Skin Sensitization:  1.0
Carcinogencity:  0.012 Eye Corrosion:  0.0
Eye Irritation:  0.0 Respiratory Toxicity:  0.0
Drug-induced Neurotoxicity:  0.0 Ototoxicity:  1.0
Hematotoxicity:  0.247 Drug-induced Nephrotoxicity:  1.0
Genotoxicity:  0.004 RPMI-8226 Immunitoxicity:  0.59
A549 Cytotoxicity:  0.914 Hek293 Cytotoxicity:  0.307
BCF:   1.721
?
Bioconcentration factors are used for considering secondary poisoning potential and assessing risks to human health via the food chain. The unit is -log10[(mg/L)/(1000*MW)].
IGC50:   3.741
?
48 hour Tetrahymena pyriformis IGC50. The unit of IGC50 is -log10[(mg/L)/(1000*MW)].
LC50DM:   5.217
?
48 hour Daphnia magna LC50. The unit of LC50DM is -log10[(mg/L)/(1000*MW)].
LC50FM:   4.36
?
96 hour fathead minnow LC50. The unit of LC50FM is -log10[(mg/L)/(1000*MW)].

  Species Source

Organism ID Organism Name Taxonomy Level Family SuperKingdom Isolation Part Collection Location Collection Time Reference
NPO1576 Anthriscus sylvestris Species Apiaceae Eukaryota n.a. root n.a. PMID[10230514]
NPO13332 Tacca chantrieri Species Taccaceae Eukaryota rhizomes SiMao City, Yunnan Province, China 1996-OCT PMID[11908966]
NPO13332 Tacca chantrieri Species Taccaceae Eukaryota Rhizomes n.a. n.a. PMID[12350150]
NPO1576 Anthriscus sylvestris Species Apiaceae Eukaryota n.a. n.a. n.a. PMID[12956064]
NPO12186 Oplopanax chironium Species Araliaceae Eukaryota n.a. n.a. n.a. PMID[15104479]
NPO11157 Corydalis saxicola Species Papaveraceae Eukaryota n.a. root n.a. PMID[17611928]
NPO11157 Corydalis saxicola Species Papaveraceae Eukaryota n.a. leaf n.a. PMID[18649321]
NPO13332 Tacca chantrieri Species Taccaceae Eukaryota n.a. n.a. n.a. PMID[20715765]
NPO7143 Acacia jacquemontii Species Fabaceae Eukaryota n.a. n.a. n.a. PMID[21894904]
NPO1576 Anthriscus sylvestris Species Apiaceae Eukaryota n.a. n.a. n.a. PMID[25608854]
NPO13332 Tacca chantrieri Species Taccaceae Eukaryota n.a. n.a. n.a. PMID[33253561]
NPO1133 Zieria laevigata Species Rutaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO13332 Tacca chantrieri Species Taccaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO12268 Aloe littoralis Species Asphodelaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO11396 Metzgeria furcata Species Metzgeriaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO6266 Anzia hypoleucoides Species Parmeliaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO8399 Psiadia trinervia Species Asteraceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO1576 Anthriscus sylvestris Species Apiaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO14634 Artemisia balchanorum Species Asteraceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO11157 Corydalis saxicola Species Papaveraceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO12093 Papaver orientale Species Papaveraceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO10695 Pelargonium zonale Species Geraniaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO13831 Cephalotaxus oliveri Species Taxaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO13426 Lemmaphyllum microphyllum Species Polypodiaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO1576 Anthriscus sylvestris Species Apiaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO12093 Papaver orientale Species Papaveraceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO13831 Cephalotaxus oliveri Species Taxaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO1576 Anthriscus sylvestris Species Apiaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO10695 Pelargonium zonale Species Geraniaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO13332 Tacca chantrieri Species Taccaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO13426 Lemmaphyllum microphyllum Species Polypodiaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO10695 Pelargonium zonale Species Geraniaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO13527 Solanum ecuadorense Species Solanaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO3227 Androsace umbellata Species Primulaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO10094 Daphne gnidioides Species Thymelaeaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO13426 Lemmaphyllum microphyllum Species Polypodiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO6266 Anzia hypoleucoides Species Parmeliaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO13332 Tacca chantrieri Species Taccaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO12268 Aloe littoralis Species Asphodelaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO14308 Coleonema pulchrum Species Rutaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO14018 Pleurotus salmoneostramineus Species Pleurotaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO13831 Cephalotaxus oliveri Species Taxaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO9487 Penicillium flexuosum Species Aspergillaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO12093 Papaver orientale Species Papaveraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO8399 Psiadia trinervia Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO1576 Anthriscus sylvestris Species Apiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO7143 Acacia jacquemontii Species Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO14634 Artemisia balchanorum Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO11753 Sideroxylon foetidissimum Species Sapotaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO5551 Podocarpus sylvestris Species Podocarpaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO11396 Metzgeria furcata Species Metzgeriaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO1133 Zieria laevigata Species Rutaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO11157 Corydalis saxicola Species Papaveraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO11909 Othonna arborescens Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO9126 Stevia maimarensis Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO11585 Geijera salicifolia Species Rutaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO10695 Pelargonium zonale Species Geraniaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO13723 Salvia eriophora Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO12186 Oplopanax chironium Species Araliaceae Eukaryota n.a. n.a. n.a. Database[UNPD]

Note for Reference:
In addition to directly collecting NP source organism data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated them from below databases:
UNPD: Universal Natural Products Database [PMID: 23638153].
StreptomeDB: a database of streptomycetes natural products [PMID: 33051671].
TM-MC: a database of medicinal materials and chemical compounds in Northeast Asian traditional medicine [PMID: 26156871].
TCM@Taiwan: a Traditional Chinese Medicine database [PMID: 21253603].
TCMID: a Traditional Chinese Medicine database [PMID: 29106634].
TCMSP: The traditional Chinese medicine systems pharmacology database and analysis platform [PMID: 24735618].
HerDing: a herb recommendation system to treat diseases using genes and chemicals [PMID: 26980517].
MetaboLights: a metabolomics database [PMID: 27010336].
FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].



  NP Quantity Composition/Concentration

Organism ID Organism Name Organism Material Preparation Organism Part NP Quantity (Standard) NP Quantity (Minimum) NP Quantity (Maximum) Quantity Unit Reference

Note for Reference:
In addition to directly collecting NP quantitative data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated NP quantitative records for specific NP domains (e.g., NPS from foods or herbs) from domain-specific databases. These databases include:
DUKE: Dr. Duke's Phytochemical and Ethnobotanical Databases.
PHENOL EXPLORER: is the first comprehensive database on polyphenol content in foods [PMID: 24103452], its homepage can be accessed at here.
FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].



 Biological Activity

Molecular-level activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference

In vitro activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference

In vivo activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference





 Experimental ADME

Experiment Model Experiment Tissue ADME Type ADME Relation ADME Value ADME Unit Reference





 Experimental Toxicity

Quantitative toxicity

Experiment Model Experiment Organism Toxicity Type Toxicity Relation Toxicity Value Toxicity Unit Reference

Common Abbreviations:
LC: Lethal Concentration; LD: Lethal Dose; LT:Lethal Time; NOAEL: No-observed-adverse-effect Level; BMDL: Benchmark Dose Lower Confidence Limit; BMD: Benchmark Dose; BMC:Benchmark Concentration; LOAEL: Lowest Observed Adverse Effect Level; RfD:Reference Dose; RfC:Reference Concentration; MRL: Minimal Risk Level; MEG: Maximum Exposure Guideline; PAC: Protective Action Criteria

Categorical toxicity labels

Hepatotoxicity Carcinogenicity Mutagenicity Cardiotoxicity Respiratory Toxicity Eye Irritation Endocrine Disruption
Hepatotoxicity Carcinogenicity Mutagenicity Cardiotoxicity Respiratory Toxicity Eye Irritation Endocrine Disruption

Note for Reference:
In addition to directly collecting NP quantitative data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated NP toxicity records from domain-specific databases. These databases include:
ToxValDB: a curated database that compiles quantitative toxicity values for chemicals from diverse public sources to support toxicological research and risk assessment.
TOXRIC: a comprehensive, free-to-access, online database providing toxicological/feature data. The toxicity labels are retrieved from this database. [PMID: 36400569]


  Chemically structural similarity

Similar Active Natural Products in NPASS

Top-200 similar NPs were calculated against the active-NP-set (includes approximately 50,000 NPs with experimentally-derived bioactivity available in NPASS)

Similarity is measured using the Tanimoto coefficient (Tc) , which compares the binary fingerprints of two molecules. Tc is calculated as the intersection divided by the union of '1' bits in the fingerprints, ranging from 0 to 1, with 1 indicating highest similarity.

●  The left chart: Distribution of similarity level between NPC120773 and all remaining natural products in the NPASS database.
●  The right table: Most similar natural products (Tc>=0.5 or Top200).

Similarity Score Similarity Level Natural Product ID
0.94 High Similarity NPC309278
0.835 Intermediate Similarity NPC300557
0.8155 Intermediate Similarity NPC602423
0.789 Intermediate Similarity NPC194207
0.789 Intermediate Similarity NPC22779
0.7544 Intermediate Similarity NPC232054
0.7368 Intermediate Similarity NPC477811
0.7232 Intermediate Similarity NPC269297
0.7232 Intermediate Similarity NPC222202
0.7207 Intermediate Similarity NPC102016
0.7207 Intermediate Similarity NPC95051
0.6992 Remote Similarity NPC263359
0.6964 Remote Similarity NPC480555
0.6964 Remote Similarity NPC150372
0.6942 Remote Similarity NPC477808
0.6897 Remote Similarity NPC218571
0.6897 Remote Similarity NPC487615
0.6881 Remote Similarity NPC113044
0.6881 Remote Similarity NPC283829
0.6881 Remote Similarity NPC161676
0.6875 Remote Similarity NPC6806
0.6852 Remote Similarity NPC470432
0.6852 Remote Similarity NPC230507
0.6724 Remote Similarity NPC116756
0.6723 Remote Similarity NPC31896
0.6721 Remote Similarity NPC224314
0.6696 Remote Similarity NPC470433
0.6696 Remote Similarity NPC46190
0.6696 Remote Similarity NPC171073
0.6639 Remote Similarity NPC480553
0.6635 Remote Similarity NPC181845
0.661 Remote Similarity NPC470864
0.6581 Remote Similarity NPC475333
0.6581 Remote Similarity NPC224098
0.6581 Remote Similarity NPC208383
0.6577 Remote Similarity NPC14704
0.6555 Remote Similarity NPC23808
0.6555 Remote Similarity NPC87998
0.6491 Remote Similarity NPC477809
0.6471 Remote Similarity NPC480554
0.6371 Remote Similarity NPC480556
0.6349 Remote Similarity NPC210569
0.6341 Remote Similarity NPC470866
0.633 Remote Similarity NPC206003
0.633 Remote Similarity NPC473610
0.6311 Remote Similarity NPC308140
0.6303 Remote Similarity NPC32361
0.625 Remote Similarity NPC232611
0.6239 Remote Similarity NPC150057
0.6239 Remote Similarity NPC147753
0.6228 Remote Similarity NPC475351
0.6207 Remote Similarity NPC248746
0.619 Remote Similarity NPC477807
0.6148 Remote Similarity NPC470862
0.6102 Remote Similarity NPC475182
0.6083 Remote Similarity NPC247037
0.6077 Remote Similarity NPC305771
0.6077 Remote Similarity NPC94072
0.6077 Remote Similarity NPC169816
0.605 Remote Similarity NPC97700
0.605 Remote Similarity NPC73243
0.605 Remote Similarity NPC244086
0.605 Remote Similarity NPC84956
0.605 Remote Similarity NPC30856
0.6034 Remote Similarity NPC98696
0.6017 Remote Similarity NPC42171
0.6017 Remote Similarity NPC182900
0.5887 Remote Similarity NPC83137
0.5862 Remote Similarity NPC305423
0.5847 Remote Similarity NPC475643
0.5846 Remote Similarity NPC15918
0.5826 Remote Similarity NPC125324
0.5806 Remote Similarity NPC249265
0.5785 Remote Similarity NPC184617
0.5772 Remote Similarity NPC13193
0.575 Remote Similarity NPC51172
0.575 Remote Similarity NPC49032
0.5714 Remote Similarity NPC244431
0.5714 Remote Similarity NPC132080
0.5691 Remote Similarity NPC475550
0.5641 Remote Similarity NPC141433
0.563 Remote Similarity NPC473601
0.562 Remote Similarity NPC48886
0.562 Remote Similarity NPC94881
0.561 Remote Similarity NPC115165
0.5492 Remote Similarity NPC249553
0.5484 Remote Similarity NPC475319
0.5476 Remote Similarity NPC232037
0.5424 Remote Similarity NPC306991
0.5424 Remote Similarity NPC94272
0.5424 Remote Similarity NPC6295
0.5397 Remote Similarity NPC473518
0.5379 Remote Similarity NPC248202
0.5373 Remote Similarity NPC79900
0.5372 Remote Similarity NPC40440
0.5372 Remote Similarity NPC486388
0.5354 Remote Similarity NPC254255
0.5349 Remote Similarity NPC233433
0.5344 Remote Similarity NPC470867
0.5317 Remote Similarity NPC486386
0.5304 Remote Similarity NPC477451
0.5299 Remote Similarity NPC107188
0.528 Remote Similarity NPC294129
0.5271 Remote Similarity NPC476112
0.5271 Remote Similarity NPC307534
0.5267 Remote Similarity NPC167183
0.5263 Remote Similarity NPC325828
0.5246 Remote Similarity NPC161738
0.5242 Remote Similarity NPC124677
0.5234 Remote Similarity NPC197003
0.5221 Remote Similarity NPC208832
0.5221 Remote Similarity NPC485594
0.5207 Remote Similarity NPC160426
0.52 Remote Similarity NPC151134
0.5169 Remote Similarity NPC19400
0.513 Remote Similarity NPC297348
0.513 Remote Similarity NPC249204
0.513 Remote Similarity NPC48339
0.513 Remote Similarity NPC141769
0.513 Remote Similarity NPC477547
0.5122 Remote Similarity NPC42482
0.5116 Remote Similarity NPC63609
0.5115 Remote Similarity NPC256983
0.5106 Remote Similarity NPC481190
0.5083 Remote Similarity NPC107962
0.5082 Remote Similarity NPC470748
0.5077 Remote Similarity NPC108072
0.5074 Remote Similarity NPC220836
0.5042 Remote Similarity NPC306131
0.5042 Remote Similarity NPC211354
0.5042 Remote Similarity NPC200802
0.5041 Remote Similarity NPC15249
0.5041 Remote Similarity NPC485595
0.5041 Remote Similarity NPC25455
0.5039 Remote Similarity NPC98018
0.5039 Remote Similarity NPC284104
0.5039 Remote Similarity NPC103616

Similar Clinical/Approved Drugs

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules.

●  The left chart: Distribution of similarity level between NPC120773 and all drugs/candidates.
●  The right table: Most similar clinical/approved drugs (Tc>=0.5 or Top200).

Similarity Score Similarity Level Drug ID Developmental Stage
0.6239 Remote Similarity NPD8450 Suspended
0.5263 Remote Similarity NPD8171 Phase 2

Bioactivity similarity

  Bioactivity similarity

Similar Natural Products in NPASS

Similarity level is defined by Bioactivity similarity was calculated based on bioactivity descriptors of compounds. The bioactivity descriptors were calculated by a recently developed AI algorithm Chemical Checker (CC) [Nature Biotechnology, 38:1087–1096, 2020; Nature Communications, 12:3932, 2021], which evaluated bioactivity similarities at five levels:
A: chemistry similarity;
B: biological targets similarity;
C: networks similarity;
D: cell-based bioactivity similarity;
E: similarity based on clinical data.
Those 5 categories of CC bioactivity descriptors were calculated and then subjected to manifold projection using UMAP algorithm, to project all NPs on a 2-Dimensional space. The current NP was highlighted with a small circle in the 2-D map. Below figures: left-to-right, A-to-E.

A: chemistry similarity
B: biological targets similarity
C: networks similarity
D: cell-based bioactivity similarity
E: similarity based on clinical data