Structure

Physi-Chem Properties

Molecular Weight:  365.09
Volume:  343.347
LogP:  0.537
LogD:  0.722
LogS:  -3.022
# Rotatable Bonds:  4
TPSA:  136.4
# H-Bond Aceptor:  7
# H-Bond Donor:  7
# Rings:  3
# Heavy Atoms:  8

MedChem Properties

QED Drug-Likeness Score:  0.451
Synthetic Accessibility Score:  3.958
Fsp3:  0.294
Lipinski Rule-of-5:  Accepted
Pfizer Rule:  Accepted
GSK Rule:  Accepted
BMS Rule:  0
Golden Triangle Rule:  Accepted
Chelating Alert:  1
PAINS Alert:  1

ADMET Properties (ADMETlab2.0)

ADMET: Absorption

Caco-2 Permeability:  -6.213
MDCK Permeability:  3.3212913876923267e-06
Pgp-inhibitor:  0.006
Pgp-substrate:  0.515
Human Intestinal Absorption (HIA):  0.647
20% Bioavailability (F20%):  0.975
30% Bioavailability (F30%):  0.998

ADMET: Distribution

Blood-Brain-Barrier Penetration (BBB):  0.014
Plasma Protein Binding (PPB):  71.61483764648438%
Volume Distribution (VD):  0.907
Pgp-substrate:  20.034507751464844%

ADMET: Metabolism

CYP1A2-inhibitor:  0.429
CYP1A2-substrate:  0.278
CYP2C19-inhibitor:  0.049
CYP2C19-substrate:  0.056
CYP2C9-inhibitor:  0.434
CYP2C9-substrate:  0.885
CYP2D6-inhibitor:  0.167
CYP2D6-substrate:  0.462
CYP3A4-inhibitor:  0.604
CYP3A4-substrate:  0.162

ADMET: Excretion

Clearance (CL):  16.486
Half-life (T1/2):  0.906

ADMET: Toxicity

hERG Blockers:  0.055
Human Hepatotoxicity (H-HT):  0.183
Drug-inuced Liver Injury (DILI):  0.767
AMES Toxicity:  0.752
Rat Oral Acute Toxicity:  0.42
Maximum Recommended Daily Dose:  0.051
Skin Sensitization:  0.945
Carcinogencity:  0.149
Eye Corrosion:  0.003
Eye Irritation:  0.279
Respiratory Toxicity:  0.308

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  Natural Product: NPC150670

Natural Product ID:  NPC150670
Common Name*:   2-[(2R,3S,4S)-2-(3,4-Dihydroxy-Phenyl)-3,5,7-Trihydroxy-Chroman-4-Ylsulfanyl]-Ethyl-Ammonium
IUPAC Name:   (2R,3S,4S)-4-(2-aminoethylsulfanyl)-2-(3,4-dihydroxyphenyl)-3,4-dihydro-2H-chromene-3,5,7-triol
Synonyms:  
Standard InCHIKey:  RTWGDOBXVVOEQF-BBWFWOEESA-N
Standard InCHI:  InChI=1S/C17H19NO6S/c18-3-4-25-17-14-12(22)6-9(19)7-13(14)24-16(15(17)23)8-1-2-10(20)11(21)5-8/h1-2,5-7,15-17,19-23H,3-4,18H2/t15-,16+,17-/m0/s1
SMILES:  NCCS[C@@H]1[C@@H](O)[C@H](Oc2c1c(O)cc(c2)O)c1ccc(c(c1)O)O
Synthetic Gene Cluster:   n.a.
ChEMBL Identifier:   CHEMBL1161697
PubChem CID:   10939749
Chemical Classification**:  
  • CHEMONTID:0000000 [Organic compounds]
    • [CHEMONTID:0000261] Phenylpropanoids and polyketides
      • [CHEMONTID:0000334] Flavonoids
        • [CHEMONTID:0000337] Flavans
          • [CHEMONTID:0003012] Flavan-3-ols
            • [CHEMONTID:0001584] Catechins

*Note: the InCHIKey will be temporarily assigned as the "Common Name" if no IUPAC name or alternative short name is available.
**Note: the Chemical Classification was calculated by NPClassifier Version 1.5. Reference: PMID:34662515.

  Species Source

Organism ID Organism Name Taxonomy Level Family SuperKingdom Isolation Part Collection Location Collection Time Reference
NPO17024 Vitis vinifera Species Vitaceae Eukaryota n.a. Nigeria(latitude 80°N and longitude 4°E) 2005; 2006 DOI[10.1002/ejlt.201000080]
NPO17024 Vitis vinifera Species Vitaceae Eukaryota n.a. n.a. n.a. DOI[10.1007/s11306-010-0259-y]
NPO17024 Vitis vinifera Species Vitaceae Eukaryota n.a. n.a. n.a. DOI[10.1007/s11306-014-0638-x]
NPO17024 Vitis vinifera Species Vitaceae Eukaryota n.a. n.a. n.a. DOI[10.1007/s11746-997-0093-1]
NPO14685 Swertia franchetiana Species Gentianaceae Eukaryota n.a. n.a. n.a. DOI[10.1016/j.bse.2004.02.008]
NPO17024 Vitis vinifera Species Vitaceae Eukaryota n.a. n.a. n.a. DOI[10.1016/j.phytol.2008.07.007]
NPO17024 Vitis vinifera Species Vitaceae Eukaryota Seeds Plovdiv, Plovdiv region in South Bulgaria DOI[10.1051/CTV/20163101031]
NPO947 Rauvolfia vomitoria Species Apocynaceae Eukaryota n.a. n.a. n.a. DOI[10.1080/01496395.2011.635623]
NPO17024 Vitis vinifera Species Vitaceae Eukaryota n.a. n.a. n.a. PMID[11170689]
NPO17024 Vitis vinifera Species Vitaceae Eukaryota n.a. fruit n.a. PMID[11312782]
NPO17024 Vitis vinifera Species Vitaceae Eukaryota n.a. leaf n.a. PMID[11312782]
NPO15659 Zanthoxylum tetraspermum Species Rutaceae Eukaryota n.a. n.a. n.a. PMID[11324918]
NPO17024 Vitis vinifera Species Vitaceae Eukaryota n.a. n.a. n.a. PMID[11408943]
NPO17024 Vitis vinifera Species Vitaceae Eukaryota n.a. fruit n.a. PMID[12105962]
NPO26327 Chaenomeles sinensis Species Rosaceae Eukaryota n.a. n.a. n.a. PMID[14600382]
NPO15063 Leathesia nana Species Chordariaceae Eukaryota n.a. n.a. n.a. PMID[15497936]
NPO9516 Gnetum latifolium Species Gnetaceae Eukaryota stem bark Veikabu bridge along the Hiritano highway 40 km from Port Moresby, Papua New Guinea 1998-FEB PMID[16038553]
NPO6160 Vaccinium oxycoccos Species Ericaceae Eukaryota n.a. fruit n.a. PMID[16417304]
NPO17024 Vitis vinifera Species Vitaceae Eukaryota n.a. Esuela Tecnica Superior de Ingenieros Agrónomos de Albacete 2007 PMID[19256538]
NPO11917 Asterospicularia laurae Species Xeniidae Eukaryota n.a. n.a. n.a. PMID[19863101]
NPO17094 Sinularia depressa Species Alcyoniidae Eukaryota n.a. n.a. n.a. PMID[20121250]
NPO17024 Vitis vinifera Species Vitaceae Eukaryota n.a. n.a. n.a. PMID[20826702]
NPO4181 Pseudoalteromonas luteoviolacea Species Pseudoalteromonadaceae Bacteria n.a. n.a. n.a. PMID[20973551]
NPO13642 Pastinaca sativa Species Apiaceae Eukaryota n.a. n.a. n.a. PMID[21800857]
NPO17024 Vitis vinifera Species Vitaceae Eukaryota n.a. n.a. n.a. PMID[22537213]
NPO17094 Sinularia depressa Species Alcyoniidae Eukaryota n.a. Hainan soft coral n.a. PMID[23357636]
NPO17024 Vitis vinifera Species Vitaceae Eukaryota n.a. n.a. n.a. PMID[23759170]
NPO17024 Vitis vinifera Species Vitaceae Eukaryota Stalks n.a. n.a. PMID[24521157]
NPO13847 Streptomyces avermectinius Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[25611131]
NPO26327 Chaenomeles sinensis Species Rosaceae Eukaryota Twigs n.a. n.a. PMID[25894905]
NPO26327 Chaenomeles sinensis Species Rosaceae Eukaryota Twigs n.a. n.a. PMID[28358502]
NPO17024 Vitis vinifera Species Vitaceae Eukaryota Seeds Benedictine Pannonhalma Archabbey, Hungary PMID[29803478]
NPO17024 Vitis vinifera Species Vitaceae Eukaryota n.a. n.a. n.a. PMID[31433178]
NPO13847 Streptomyces avermectinius Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[464561]
NPO14685 Swertia franchetiana Species Gentianaceae Eukaryota n.a. n.a. n.a. PMID[7513747]
NPO14685 Swertia franchetiana Species Gentianaceae Eukaryota n.a. n.a. n.a. PMID[7561895]
NPO13642 Pastinaca sativa Species Apiaceae Eukaryota Seed n.a. n.a. Database[FooDB]
NPO17024 Vitis vinifera Species Vitaceae Eukaryota Seed n.a. n.a. Database[FooDB]
NPO17024 Vitis vinifera Species Vitaceae Eukaryota Stem n.a. n.a. Database[FooDB]
NPO17024 Vitis vinifera Species Vitaceae Eukaryota n.a. n.a. Database[FooDB]
NPO6160 Vaccinium oxycoccos Species Ericaceae Eukaryota n.a. n.a. Database[FooDB]
NPO13642 Pastinaca sativa Species Apiaceae Eukaryota n.a. n.a. Database[FooDB]
NPO17024 Vitis vinifera Species Vitaceae Eukaryota Fruit n.a. n.a. Database[FooDB]
NPO13642 Pastinaca sativa Species Apiaceae Eukaryota Roots n.a. Database[FooDB]
NPO13642 Pastinaca sativa Species Apiaceae Eukaryota Leaf n.a. n.a. Database[FooDB]
NPO17024 Vitis vinifera Species Vitaceae Eukaryota Fruits n.a. Database[FooDB]
NPO17024 Vitis vinifera Species Vitaceae Eukaryota Leaf n.a. n.a. Database[FooDB]
NPO17024 Vitis vinifera Species Vitaceae Eukaryota Leaf Essent. Oil n.a. n.a. Database[FooDB]
NPO17024 Vitis vinifera Species Vitaceae Eukaryota Plant n.a. n.a. Database[FooDB]
NPO13642 Pastinaca sativa Species Apiaceae Eukaryota Root n.a. n.a. Database[FooDB]
NPO13642 Pastinaca sativa Species Apiaceae Eukaryota Root Essent. Oil n.a. n.a. Database[FooDB]
NPO26327 Chaenomeles sinensis Species Rosaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO13167 Scutellaria amoena Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO947 Rauvolfia vomitoria Species Apocynaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO13642 Pastinaca sativa Species Apiaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO17024 Vitis vinifera Species Vitaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO14685 Swertia franchetiana Species Gentianaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO17024 Vitis vinifera Species Vitaceae Eukaryota n.a. n.a. n.a. Database[MetaboLights]
NPO13642 Pastinaca sativa Species Apiaceae Eukaryota n.a. n.a. Database[Phenol-Explorer]
NPO6160 Vaccinium oxycoccos Species Ericaceae Eukaryota Fruits n.a. Database[Phenol-Explorer]
NPO13642 Pastinaca sativa Species Apiaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO17024 Vitis vinifera Species Vitaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO26327 Chaenomeles sinensis Species Rosaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO9516 Gnetum latifolium Species Gnetaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO16857 Hypericum laricifolium Species Hypericaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO11641 Solanum laxum Species Solanaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO13167 Scutellaria amoena Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO947 Rauvolfia vomitoria Species Apocynaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO14685 Swertia franchetiana Species Gentianaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO13642 Pastinaca sativa Species Apiaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO17024 Vitis vinifera Species Vitaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO13167 Scutellaria amoena Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO26327 Chaenomeles sinensis Species Rosaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO12703 Eucalyptus melliodora Species Myrtaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO18022 Naucleopsis ternstroemiiflora Species Moraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO17169 Adiantum lunulatum Species Pteridaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO17094 Sinularia depressa Species Alcyoniidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO13847 Streptomyces avermectinius Species Streptomycetaceae Bacteria n.a. n.a. n.a. Database[UNPD]
NPO21724 Sabina sargentii n.a. n.a. n.a. n.a. n.a. n.a. Database[UNPD]
NPO17942 Wikstroemia retusa Species Thymelaeaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO13167 Scutellaria amoena Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO14859 Bishovia boliviensis n.a. n.a. n.a. n.a. n.a. n.a. Database[UNPD]
NPO26327 Chaenomeles sinensis Species Rosaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO17786 Marrubium anisodon Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO15552 Anacystis montana n.a. n.a. n.a. n.a. n.a. n.a. Database[UNPD]
NPO17242 Laurencia spectabilis Species Rhodomelaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO947 Rauvolfia vomitoria Species Apocynaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO17702 Astragalus sempervirens Species Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO9516 Gnetum latifolium Species Gnetaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO16731 Phoebe pittieri Species Lauraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO15227 Helipterum roseum Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO15803 Artemisia assoana Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO15467 Hedysarum connatum Species Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO16857 Hypericum laricifolium Species Hypericaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO17024 Vitis vinifera Species Vitaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO3964 Calostephane divaricata Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO6881 Caragana aurantiaca Species Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO14395 Lysimachia mauritiana Species Primulaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO16611 Alstonia spathulata Species Apocynaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO15063 Leathesia nana Species Chordariaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO17472 Drechslera avenae Species Pleosporaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO13642 Pastinaca sativa Species Apiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO17544 Acacia adunca Species Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO4181 Pseudoalteromonas luteoviolacea Species Pseudoalteromonadaceae Bacteria n.a. n.a. n.a. Database[UNPD]
NPO16089 Dumortiera hirsuta Species Dumortieraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO11641 Solanum laxum Species Solanaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO7562 Premna odorata Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO16493 Nasutitermes ephratae Species Termitoidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO11538 Salvia syriaca Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO15659 Zanthoxylum tetraspermum Species Rutaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO17400 Peltostigma guatemalense Species Rutaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO4325 Blastochloris viridis Species Hyphomicrobiaceae Bacteria n.a. n.a. n.a. Database[UNPD]
NPO11917 Asterospicularia laurae Species Xeniidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO14685 Swertia franchetiana Species Gentianaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO17865 Amathia pinnata Species Vesiculariidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO2507 Rumex maritimus Species Polygonaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO13407 Goniothalamus malayanus Species Annonaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO17633 Viguiera incana Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO8506 Cotyledon secunda Species Crassulaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO10989 Annona cornifolia Species Annonaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO10417 Ipomoea digitata Species Convolvulaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO6160 Vaccinium oxycoccos Species Ericaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO16369 Lepisorus ussuriensis Species Polypodiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]

☑ Note for Reference:
In addition to directly collecting NP source organism data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated them from below databases:
UNPD: Universal Natural Products Database [PMID: 23638153].
StreptomeDB: a database of streptomycetes natural products [PMID: 33051671].
TM-MC: a database of medicinal materials and chemical compounds in Northeast Asian traditional medicine [PMID: 26156871].
TCM@Taiwan: a Traditional Chinese Medicine database [PMID: 21253603].
TCMID: a Traditional Chinese Medicine database [PMID: 29106634].
TCMSP: The traditional Chinese medicine systems pharmacology database and analysis platform [PMID: 24735618].
HerDing: a herb recommendation system to treat diseases using genes and chemicals [PMID: 26980517].
MetaboLights: a metabolomics database [PMID: 27010336].
FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].

  NP Quantity Composition/Concentration

Organism ID NP ID Organism Material Preparation Organism Part NP Quantity (Standard) NP Quantity (Minimum) NP Quantity (Maximum) Quantity Unit Reference

☑ Note for Reference:
In addition to directly collecting NP quantitative data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated NP quantitative records for specific NP domains (e.g., NPS from foods or herbs) from domain-specific databases. These databases include:
DUKE: Dr. Duke's Phytochemical and Ethnobotanical Databases.
PHENOL EXPLORER: is the first comprehensive database on polyphenol content in foods [PMID: 24103452], its homepage can be accessed at here.
FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].

  Biological Activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference
NPT2 Others Unspecified IC50 = 89400.0 nM PMID[549133]

☑ Note for Activity Records:
☉ The quantitative biological activities were primarily integrated from ChEMBL (Version-30) database and were also directly collected from PubMed literature. PubMed PMID was provided as the reference link for each activity record.

  Chemically structural similarity: I. Similar Active Natural Products in NPASS

Top-200 similar NPs were calculated against the active-NP-set (includes 4,3285 NPs with experimentally-derived bioactivity available in NPASS)

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules. Tc lies between [0, 1] where '1' indicates the highest similarity. What is Tanimoto coefficient

●  The left chart: Distribution of similarity level between NPC150670 and all remaining natural products in the NPASS database.
●  The right table: Most similar natural products (Tc>=0.56 or Top200).

Similarity Score Similarity Level Natural Product ID
0.8699 High Similarity NPC164787
0.8639 High Similarity NPC16435
0.8639 High Similarity NPC269091
0.8639 High Similarity NPC306441
0.8639 High Similarity NPC302701
0.8621 High Similarity NPC219876
0.8621 High Similarity NPC15658
0.8621 High Similarity NPC61477
0.8621 High Similarity NPC126029
0.8621 High Similarity NPC185604
0.8621 High Similarity NPC78770
0.8621 High Similarity NPC261619
0.8608 High Similarity NPC46067
0.8571 High Similarity NPC112246
0.8571 High Similarity NPC47398
0.8571 High Similarity NPC61946
0.8571 High Similarity NPC470356
0.8571 High Similarity NPC234333
0.8571 High Similarity NPC474206
0.8571 High Similarity NPC151224
0.8571 High Similarity NPC94750
0.8571 High Similarity NPC121812
0.8571 High Similarity NPC260898
0.8571 High Similarity NPC112939
0.8562 High Similarity NPC11060
0.8552 High Similarity NPC42760
0.8552 High Similarity NPC268266
0.8552 High Similarity NPC220825
0.8552 High Similarity NPC268342
0.8544 High Similarity NPC186595
0.8514 High Similarity NPC470802
0.8514 High Similarity NPC474639
0.8514 High Similarity NPC230734
0.8514 High Similarity NPC227503
0.8456 Intermediate Similarity NPC103976
0.8456 Intermediate Similarity NPC211549
0.8456 Intermediate Similarity NPC326797
0.8456 Intermediate Similarity NPC107551
0.8456 Intermediate Similarity NPC102904
0.8456 Intermediate Similarity NPC176051
0.8456 Intermediate Similarity NPC474282
0.8446 Intermediate Similarity NPC473413
0.8435 Intermediate Similarity NPC263064
0.8435 Intermediate Similarity NPC475840
0.8411 Intermediate Similarity NPC471389
0.8411 Intermediate Similarity NPC178054
0.8389 Intermediate Similarity NPC234952
0.8389 Intermediate Similarity NPC162659
0.8389 Intermediate Similarity NPC472334
0.8389 Intermediate Similarity NPC265433
0.8389 Intermediate Similarity NPC270456
0.8389 Intermediate Similarity NPC248727
0.8389 Intermediate Similarity NPC472336
0.8378 Intermediate Similarity NPC317380
0.8378 Intermediate Similarity NPC170694
0.8367 Intermediate Similarity NPC202762
0.8367 Intermediate Similarity NPC86655
0.8367 Intermediate Similarity NPC253105
0.8367 Intermediate Similarity NPC470752
0.8367 Intermediate Similarity NPC127624
0.8367 Intermediate Similarity NPC201587
0.8345 Intermediate Similarity NPC46274
0.8345 Intermediate Similarity NPC226331
0.8344 Intermediate Similarity NPC309124
0.8344 Intermediate Similarity NPC184797
0.8333 Intermediate Similarity NPC276490
0.8322 Intermediate Similarity NPC472337
0.8311 Intermediate Similarity NPC168059
0.8311 Intermediate Similarity NPC229442
0.8299 Intermediate Similarity NPC309787
0.8299 Intermediate Similarity NPC472597
0.8278 Intermediate Similarity NPC473739
0.8278 Intermediate Similarity NPC260741
0.8278 Intermediate Similarity NPC25966
0.8278 Intermediate Similarity NPC70682
0.8278 Intermediate Similarity NPC319647
0.8278 Intermediate Similarity NPC127218
0.8278 Intermediate Similarity NPC236306
0.8278 Intermediate Similarity NPC245207
0.8278 Intermediate Similarity NPC232164
0.8278 Intermediate Similarity NPC32630
0.8278 Intermediate Similarity NPC471388
0.8276 Intermediate Similarity NPC5447
0.8276 Intermediate Similarity NPC250432
0.8255 Intermediate Similarity NPC478085
0.8247 Intermediate Similarity NPC138227
0.8247 Intermediate Similarity NPC28440
0.8247 Intermediate Similarity NPC168579
0.8247 Intermediate Similarity NPC469313
0.8247 Intermediate Similarity NPC171932
0.8247 Intermediate Similarity NPC76176
0.8243 Intermediate Similarity NPC7903
0.8243 Intermediate Similarity NPC16208
0.8243 Intermediate Similarity NPC184447
0.8243 Intermediate Similarity NPC160991
0.8243 Intermediate Similarity NPC35932
0.8235 Intermediate Similarity NPC107161
0.8231 Intermediate Similarity NPC472338
0.8231 Intermediate Similarity NPC91291
0.8224 Intermediate Similarity NPC22317
0.8219 Intermediate Similarity NPC72529
0.8212 Intermediate Similarity NPC474390
0.82 Intermediate Similarity NPC195022
0.8194 Intermediate Similarity NPC475096
0.8182 Intermediate Similarity NPC37793
0.8182 Intermediate Similarity NPC81638
0.8176 Intermediate Similarity NPC103799
0.817 Intermediate Similarity NPC265075
0.817 Intermediate Similarity NPC87725
0.817 Intermediate Similarity NPC263261
0.817 Intermediate Similarity NPC247291
0.817 Intermediate Similarity NPC469661
0.817 Intermediate Similarity NPC35216
0.8163 Intermediate Similarity NPC222004
0.8163 Intermediate Similarity NPC210623
0.8163 Intermediate Similarity NPC5851
0.8163 Intermediate Similarity NPC285339
0.8163 Intermediate Similarity NPC86030
0.8163 Intermediate Similarity NPC3439
0.8163 Intermediate Similarity NPC273295
0.8163 Intermediate Similarity NPC212015
0.8163 Intermediate Similarity NPC218856
0.8163 Intermediate Similarity NPC202582
0.8163 Intermediate Similarity NPC226788
0.8163 Intermediate Similarity NPC170844
0.8163 Intermediate Similarity NPC476968
0.8163 Intermediate Similarity NPC190629
0.8163 Intermediate Similarity NPC470258
0.8158 Intermediate Similarity NPC22517
0.8146 Intermediate Similarity NPC173660
0.8141 Intermediate Similarity NPC99515
0.8141 Intermediate Similarity NPC125755
0.8141 Intermediate Similarity NPC190714
0.8138 Intermediate Similarity NPC207179
0.8138 Intermediate Similarity NPC167571
0.8138 Intermediate Similarity NPC278552
0.8133 Intermediate Similarity NPC310854
0.8133 Intermediate Similarity NPC106215
0.8129 Intermediate Similarity NPC93323
0.8129 Intermediate Similarity NPC473108
0.8129 Intermediate Similarity NPC45257
0.8129 Intermediate Similarity NPC280092
0.8129 Intermediate Similarity NPC12641
0.8129 Intermediate Similarity NPC50250
0.8117 Intermediate Similarity NPC2613
0.8117 Intermediate Similarity NPC475084
0.8117 Intermediate Similarity NPC475891
0.8117 Intermediate Similarity NPC204347
0.8117 Intermediate Similarity NPC189115
0.8117 Intermediate Similarity NPC59841
0.8105 Intermediate Similarity NPC160283
0.8105 Intermediate Similarity NPC259519
0.8105 Intermediate Similarity NPC254759
0.8105 Intermediate Similarity NPC262189
0.8105 Intermediate Similarity NPC27495
0.8105 Intermediate Similarity NPC266197
0.8105 Intermediate Similarity NPC291101
0.8095 Intermediate Similarity NPC222572
0.8095 Intermediate Similarity NPC87224
0.8095 Intermediate Similarity NPC31707
0.8095 Intermediate Similarity NPC474178
0.8095 Intermediate Similarity NPC98631
0.8095 Intermediate Similarity NPC206615
0.8095 Intermediate Similarity NPC470213
0.8095 Intermediate Similarity NPC252307
0.8095 Intermediate Similarity NPC186843
0.8095 Intermediate Similarity NPC245826
0.8089 Intermediate Similarity NPC473480
0.8089 Intermediate Similarity NPC474397
0.8089 Intermediate Similarity NPC58190
0.8089 Intermediate Similarity NPC170103
0.8089 Intermediate Similarity NPC236202
0.8089 Intermediate Similarity NPC18185
0.8089 Intermediate Similarity NPC70409
0.8089 Intermediate Similarity NPC263940
0.8089 Intermediate Similarity NPC82917
0.8089 Intermediate Similarity NPC227902
0.8089 Intermediate Similarity NPC15538
0.8089 Intermediate Similarity NPC204770
0.8089 Intermediate Similarity NPC108811
0.8089 Intermediate Similarity NPC202742
0.8089 Intermediate Similarity NPC262911
0.8089 Intermediate Similarity NPC294558
0.8079 Intermediate Similarity NPC256262
0.8079 Intermediate Similarity NPC134968
0.8077 Intermediate Similarity NPC161700
0.8077 Intermediate Similarity NPC277867
0.8065 Intermediate Similarity NPC473044
0.8065 Intermediate Similarity NPC47633
0.8065 Intermediate Similarity NPC477616
0.8065 Intermediate Similarity NPC252169
0.8065 Intermediate Similarity NPC85264
0.8065 Intermediate Similarity NPC102044
0.8054 Intermediate Similarity NPC469613
0.8054 Intermediate Similarity NPC474017
0.8054 Intermediate Similarity NPC470095
0.8054 Intermediate Similarity NPC30043
0.8054 Intermediate Similarity NPC470096
0.8054 Intermediate Similarity NPC469625
0.8052 Intermediate Similarity NPC311530

  Chemically structural similarity: II. Similar Clinical/Approved Drugs

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules.

●  The left chart: Distribution of similarity level between NPC150670 and all drugs/candidates.
●  The right table: Most similar clinical/approved drugs (Tc>=0.56 or Top200).

Similarity Score Similarity Level Drug ID Developmental Stage
0.8621 High Similarity NPD1612 Clinical (unspecified phase)
0.8621 High Similarity NPD1613 Approved
0.8345 Intermediate Similarity NPD1529 Clinical (unspecified phase)
0.8276 Intermediate Similarity NPD1530 Clinical (unspecified phase)
0.817 Intermediate Similarity NPD5698 Clinical (unspecified phase)
0.8163 Intermediate Similarity NPD3027 Phase 3
0.7935 Intermediate Similarity NPD1652 Phase 2
0.7922 Intermediate Similarity NPD2029 Clinical (unspecified phase)
0.7619 Intermediate Similarity NPD1610 Phase 2
0.7616 Intermediate Similarity NPD4908 Phase 1
0.761 Intermediate Similarity NPD2677 Approved
0.759 Intermediate Similarity NPD6374 Clinical (unspecified phase)
0.7576 Intermediate Similarity NPD1934 Approved
0.753 Intermediate Similarity NPD2393 Clinical (unspecified phase)
0.7516 Intermediate Similarity NPD4907 Clinical (unspecified phase)
0.7484 Intermediate Similarity NPD3060 Approved
0.7469 Intermediate Similarity NPD4160 Clinical (unspecified phase)
0.7468 Intermediate Similarity NPD3540 Phase 1
0.7466 Intermediate Similarity NPD1548 Phase 1
0.745 Intermediate Similarity NPD2231 Phase 2
0.745 Intermediate Similarity NPD2235 Phase 2
0.744 Intermediate Similarity NPD4868 Clinical (unspecified phase)
0.7439 Intermediate Similarity NPD1653 Approved
0.7434 Intermediate Similarity NPD2861 Phase 2
0.7407 Intermediate Similarity NPD7212 Phase 2
0.7407 Intermediate Similarity NPD7213 Phase 3
0.7407 Intermediate Similarity NPD1774 Approved
0.7405 Intermediate Similarity NPD3539 Phase 1
0.7375 Intermediate Similarity NPD4162 Approved
0.7372 Intermediate Similarity NPD4340 Discontinued
0.7362 Intermediate Similarity NPD7447 Phase 1
0.7341 Intermediate Similarity NPD6166 Phase 2
0.7341 Intermediate Similarity NPD6168 Clinical (unspecified phase)
0.7341 Intermediate Similarity NPD6167 Clinical (unspecified phase)
0.7333 Intermediate Similarity NPD6842 Approved
0.7333 Intermediate Similarity NPD6843 Phase 3
0.7333 Intermediate Similarity NPD6841 Approved
0.7329 Intermediate Similarity NPD4535 Phase 3
0.7321 Intermediate Similarity NPD5929 Approved
0.7321 Intermediate Similarity NPD7089 Clinical (unspecified phase)
0.7317 Intermediate Similarity NPD2236 Approved
0.7308 Intermediate Similarity NPD1558 Phase 1
0.7289 Intermediate Similarity NPD6055 Clinical (unspecified phase)
0.7267 Intermediate Similarity NPD5062 Approved
0.7267 Intermediate Similarity NPD5061 Approved
0.7267 Intermediate Similarity NPD5177 Phase 3
0.7246 Intermediate Similarity NPD4675 Approved
0.7246 Intermediate Similarity NPD4678 Approved
0.7233 Intermediate Similarity NPD3846 Clinical (unspecified phase)
0.7229 Intermediate Similarity NPD3687 Approved
0.7229 Intermediate Similarity NPD3686 Approved
0.7226 Intermediate Similarity NPD4625 Phase 3
0.7222 Intermediate Similarity NPD3892 Phase 2
0.7219 Intermediate Similarity NPD2978 Approved
0.7219 Intermediate Similarity NPD2801 Approved
0.7219 Intermediate Similarity NPD2977 Approved
0.7212 Intermediate Similarity NPD5261 Clinical (unspecified phase)
0.7197 Intermediate Similarity NPD3062 Approved
0.7197 Intermediate Similarity NPD3061 Approved
0.7197 Intermediate Similarity NPD3059 Approved
0.7195 Intermediate Similarity NPD1511 Approved
0.7193 Intermediate Similarity NPD7975 Clinical (unspecified phase)
0.7179 Intermediate Similarity NPD6410 Clinical (unspecified phase)
0.7175 Intermediate Similarity NPD7074 Phase 3
0.7171 Intermediate Similarity NPD4749 Approved
0.7159 Intermediate Similarity NPD3818 Discontinued
0.7152 Intermediate Similarity NPD1091 Approved
0.7143 Intermediate Similarity NPD6584 Phase 3
0.7133 Intermediate Similarity NPD9384 Approved
0.7133 Intermediate Similarity NPD9381 Approved
0.7125 Intermediate Similarity NPD2155 Approved
0.7125 Intermediate Similarity NPD2156 Approved
0.7125 Intermediate Similarity NPD2154 Approved
0.7119 Intermediate Similarity NPD7054 Approved
0.7115 Intermediate Similarity NPD3180 Approved
0.7115 Intermediate Similarity NPD3179 Approved
0.711 Intermediate Similarity NPD4666 Phase 3
0.7108 Intermediate Similarity NPD7527 Clinical (unspecified phase)
0.7108 Intermediate Similarity NPD7526 Approved
0.7108 Intermediate Similarity NPD52 Approved
0.7108 Intermediate Similarity NPD1512 Approved
0.7107 Intermediate Similarity NPD3052 Approved
0.7107 Intermediate Similarity NPD5314 Approved
0.7107 Intermediate Similarity NPD3054 Approved
0.7097 Intermediate Similarity NPD3018 Phase 2
0.7089 Intermediate Similarity NPD3597 Clinical (unspecified phase)
0.7083 Intermediate Similarity NPD3111 Phase 1
0.7083 Intermediate Similarity NPD4005 Discontinued
0.7079 Intermediate Similarity NPD7472 Approved
0.7073 Intermediate Similarity NPD5307 Clinical (unspecified phase)
0.7072 Intermediate Similarity NPD8053 Approved
0.7072 Intermediate Similarity NPD8054 Approved
0.7056 Intermediate Similarity NPD7549 Discontinued
0.7053 Intermediate Similarity NPD7590 Clinical (unspecified phase)
0.7052 Intermediate Similarity NPD5709 Phase 3
0.7051 Intermediate Similarity NPD3537 Clinical (unspecified phase)
0.7048 Intermediate Similarity NPD3536 Discontinued
0.7048 Intermediate Similarity NPD3985 Discontinued
0.7041 Intermediate Similarity NPD4380 Phase 2
0.7039 Intermediate Similarity NPD6797 Phase 2
0.7039 Intermediate Similarity NPD7993 Clinical (unspecified phase)
0.7035 Intermediate Similarity NPD3882 Suspended
0.7032 Intermediate Similarity NPD558 Phase 2
0.703 Intermediate Similarity NPD3122 Phase 3
0.7029 Intermediate Similarity NPD7229 Phase 3
0.7025 Intermediate Similarity NPD6405 Approved
0.7025 Intermediate Similarity NPD6407 Approved
0.7019 Intermediate Similarity NPD6029 Clinical (unspecified phase)
0.7019 Intermediate Similarity NPD6028 Clinical (unspecified phase)
0.7018 Intermediate Similarity NPD5563 Clinical (unspecified phase)
0.7 Intermediate Similarity NPD7615 Clinical (unspecified phase)
0.7 Intermediate Similarity NPD2568 Approved
0.7 Intermediate Similarity NPD6072 Discontinued
0.7 Intermediate Similarity NPD7251 Discontinued
0.6995 Remote Similarity NPD4663 Approved
0.6994 Remote Similarity NPD4381 Clinical (unspecified phase)
0.6994 Remote Similarity NPD6971 Discontinued
0.6984 Remote Similarity NPD7237 Clinical (unspecified phase)
0.6981 Remote Similarity NPD2238 Phase 2
0.6961 Remote Similarity NPD4338 Clinical (unspecified phase)
0.6959 Remote Similarity NPD3382 Approved
0.6959 Remote Similarity NPD3383 Approved
0.6959 Remote Similarity NPD3384 Approved
0.6957 Remote Similarity NPD4536 Approved
0.6957 Remote Similarity NPD4537 Clinical (unspecified phase)
0.6957 Remote Similarity NPD4538 Approved
0.6954 Remote Similarity NPD6234 Discontinued
0.6951 Remote Similarity NPD4236 Phase 3
0.6951 Remote Similarity NPD6674 Discontinued
0.6951 Remote Similarity NPD4237 Approved
0.6949 Remote Similarity NPD2489 Approved
0.6949 Remote Similarity NPD27 Approved
0.6948 Remote Similarity NPD2982 Phase 2
0.6948 Remote Similarity NPD2983 Phase 2
0.6948 Remote Similarity NPD6583 Phase 3
0.6948 Remote Similarity NPD6582 Phase 2
0.6948 Remote Similarity NPD9622 Approved
0.6946 Remote Similarity NPD4123 Phase 3
0.6943 Remote Similarity NPD600 Approved
0.6943 Remote Similarity NPD596 Approved
0.6933 Remote Similarity NPD7266 Discontinued
0.6933 Remote Similarity NPD1552 Clinical (unspecified phase)
0.6933 Remote Similarity NPD1550 Clinical (unspecified phase)
0.6927 Remote Similarity NPD7680 Approved
0.6927 Remote Similarity NPD5844 Phase 1
0.6923 Remote Similarity NPD4578 Approved
0.6923 Remote Similarity NPD4577 Approved
0.6918 Remote Similarity NPD3530 Approved
0.6918 Remote Similarity NPD3532 Approved
0.6918 Remote Similarity NPD3531 Approved
0.6914 Remote Similarity NPD5588 Approved
0.6914 Remote Similarity NPD5960 Phase 3
0.6909 Remote Similarity NPD7466 Approved
0.6909 Remote Similarity NPD6331 Phase 2
0.6899 Remote Similarity NPD6179 Discontinued
0.6894 Remote Similarity NPD823 Approved
0.6894 Remote Similarity NPD817 Approved
0.6893 Remote Similarity NPD2970 Approved
0.6893 Remote Similarity NPD2969 Approved
0.689 Remote Similarity NPD1549 Phase 2
0.689 Remote Similarity NPD2424 Discontinued
0.6883 Remote Similarity NPD2981 Phase 2
0.6879 Remote Similarity NPD2563 Approved
0.6879 Remote Similarity NPD3817 Phase 2
0.6879 Remote Similarity NPD2560 Approved
0.6875 Remote Similarity NPD4060 Phase 1
0.6875 Remote Similarity NPD7199 Phase 2
0.6875 Remote Similarity NPD5837 Clinical (unspecified phase)
0.6872 Remote Similarity NPD7228 Approved
0.6871 Remote Similarity NPD6032 Approved
0.6871 Remote Similarity NPD228 Approved
0.6868 Remote Similarity NPD7808 Phase 3
0.6865 Remote Similarity NPD7906 Approved
0.6864 Remote Similarity NPD2900 Approved
0.6864 Remote Similarity NPD2901 Approved
0.6864 Remote Similarity NPD5976 Discontinued
0.686 Remote Similarity NPD5722 Discontinued
0.686 Remote Similarity NPD37 Approved
0.6859 Remote Similarity NPD1819 Approved
0.6859 Remote Similarity NPD1818 Approved
0.6859 Remote Similarity NPD1794 Approved
0.6859 Remote Similarity NPD1817 Approved
0.6859 Remote Similarity NPD1820 Approved
0.6855 Remote Similarity NPD3056 Clinical (unspecified phase)
0.6855 Remote Similarity NPD6859 Clinical (unspecified phase)
0.6845 Remote Similarity NPD1754 Clinical (unspecified phase)
0.6845 Remote Similarity NPD1424 Approved
0.6842 Remote Similarity NPD3049 Approved
0.6839 Remote Similarity NPD4965 Approved
0.6839 Remote Similarity NPD4967 Phase 2
0.6839 Remote Similarity NPD3075 Approved
0.6839 Remote Similarity NPD4581 Clinical (unspecified phase)
0.6839 Remote Similarity NPD4966 Approved
0.6836 Remote Similarity NPD3051 Approved
0.6836 Remote Similarity NPD6071 Discontinued
0.6835 Remote Similarity NPD5752 Clinical (unspecified phase)
0.6832 Remote Similarity NPD5124 Phase 1
0.6832 Remote Similarity NPD5123 Clinical (unspecified phase)
0.6831 Remote Similarity NPD7311 Approved
0.6831 Remote Similarity NPD7313 Approved

  Bioactivity similarity: Similar Natural Products in NPASS

Bioactivity similarity was calculated based on bioactivity descriptors of compounds. The bioactivity descriptors were calculated by a recently developed AI algorithm Chemical Checker (CC) [Nature Biotechnology, 38:1087–1096, 2020; Nature Communications, 12:3932, 2021], which evaluated bioactivity similarities at five levels:
A: chemistry similarity;
B: biological targets similarity;
C: networks similarity;
D: cell-based bioactivity similarity;
E: similarity based on clinical data.

Those 5 categories of CC bioactivity descriptors were calculated and then subjected to manifold projection using UMAP algorithm, to project all NPs on a 2-Dimensional space. The current NP was highlighted with a small circle in the 2-D map. Below figures: left-to-right, A-to-E.

A: chemistry similarity
B: biological targets similarity
C: networks similarity
D: cell-based bioactivity similarity
E: similarity based on clinical data