Structure

Physi-Chem Properties

Molecular Weight:  356.13
Volume:  348.616
LogP:  3.231
LogD:  3.274
LogS:  -4.393
# Rotatable Bonds:  3
TPSA:  66.38
# H-Bond Aceptor:  6
# H-Bond Donor:  1
# Rings:  5
# Heavy Atoms:  6

MedChem Properties

QED Drug-Likeness Score:  0.911
Synthetic Accessibility Score:  3.728
Fsp3:  0.4
Lipinski Rule-of-5:  Accepted
Pfizer Rule:  Rejected
GSK Rule:  Accepted
BMS Rule:  0
Golden Triangle Rule:  Accepted
Chelating Alert:  1
PAINS Alert:  0

ADMET Properties (ADMETlab2.0)

ADMET: Absorption

Caco-2 Permeability:  -4.958
MDCK Permeability:  4.6045130147831514e-05
Pgp-inhibitor:  0.07
Pgp-substrate:  0.001
Human Intestinal Absorption (HIA):  0.002
20% Bioavailability (F20%):  0.003
30% Bioavailability (F30%):  0.003

ADMET: Distribution

Blood-Brain-Barrier Penetration (BBB):  0.263
Plasma Protein Binding (PPB):  95.01322174072266%
Volume Distribution (VD):  1.141
Pgp-substrate:  3.4842379093170166%

ADMET: Metabolism

CYP1A2-inhibitor:  0.595
CYP1A2-substrate:  0.759
CYP2C19-inhibitor:  0.862
CYP2C19-substrate:  0.306
CYP2C9-inhibitor:  0.732
CYP2C9-substrate:  0.808
CYP2D6-inhibitor:  0.888
CYP2D6-substrate:  0.853
CYP3A4-inhibitor:  0.925
CYP3A4-substrate:  0.325

ADMET: Excretion

Clearance (CL):  16.578
Half-life (T1/2):  0.233

ADMET: Toxicity

hERG Blockers:  0.25
Human Hepatotoxicity (H-HT):  0.15
Drug-inuced Liver Injury (DILI):  0.797
AMES Toxicity:  0.598
Rat Oral Acute Toxicity:  0.051
Maximum Recommended Daily Dose:  0.482
Skin Sensitization:  0.852
Carcinogencity:  0.867
Eye Corrosion:  0.003
Eye Irritation:  0.897
Respiratory Toxicity:  0.765

Download Data

Data Type Select
General Info & Identifiers & Properties  
Structure MOL file  
Source Organisms  
Biological Activities  
Similar NPs/Drugs  

  Natural Product: NPC123526

Natural Product ID:  NPC123526
Common Name*:   Piperitol
IUPAC Name:   4-[(3R,3aS,6R,6aS)-3-(1,3-benzodioxol-5-yl)-1,3,3a,4,6,6a-hexahydrofuro[3,4-c]furan-6-yl]-2-methoxyphenol
Synonyms:   Piperitol
Standard InCHIKey:  VBIRCRCPHNUJAS-NSMLZSOPSA-N
Standard InCHI:  InChI=1S/C20H20O6/c1-22-17-6-11(2-4-15(17)21)19-13-8-24-20(14(13)9-23-19)12-3-5-16-18(7-12)26-10-25-16/h2-7,13-14,19-21H,8-10H2,1H3/t13-,14-,19+,20+/m1/s1
SMILES:  COc1cc(ccc1O)[C@@H]1OC[C@@H]2[C@H]1CO[C@H]2c1ccc2c(c1)OCO2
Synthetic Gene Cluster:   n.a.
ChEMBL Identifier:   CHEMBL2011540
PubChem CID:   70695728
Chemical Classification**:  
  • CHEMONTID:0000000 [Organic compounds]
    • [CHEMONTID:0001392] Lignans, neolignans and related compounds
      • [CHEMONTID:0003686] Furanoid lignans

*Note: the InCHIKey will be temporarily assigned as the "Common Name" if no IUPAC name or alternative short name is available.
**Note: the Chemical Classification was calculated by NPClassifier Version 1.5. Reference: PMID:34662515.

  Species Source

Organism ID Organism Name Taxonomy Level Family SuperKingdom Isolation Part Collection Location Collection Time Reference
NPO28276 Artemisia argyi Species Asteraceae Eukaryota n.a. n.a. n.a. DOI[10.1016/j.jep.2005.01.054]
NPO27288 Citrus maxima Species Rutaceae Eukaryota n.a. n.a. n.a. DOI[10.1016/S0031-9422(99)00119-3]
NPO11438 Angelica gigas Species Apiaceae Eukaryota n.a. root n.a. PMID[11374978]
NPO24778 Sesamum orientale Species Pedaliaceae Eukaryota n.a. seed n.a. PMID[11540412]
NPO9290 Zanthoxylum piperitum Species Rutaceae Eukaryota n.a. leaf n.a. PMID[15388977]
NPO11438 Angelica gigas Species Apiaceae Eukaryota n.a. n.a. n.a. PMID[15679317]
NPO9553 Phyllodium pulchellum Species Fabaceae Eukaryota n.a. n.a. n.a. PMID[15921433]
NPO15462 Angelica sinensis Species Apiaceae Eukaryota roots purchased from Kiu Shun Trading Ltd., Vancouver, Canada 2000 PMID[16643021]
NPO9290 Zanthoxylum piperitum Species Rutaceae Eukaryota n.a. stem n.a. PMID[17202689]
NPO25094 Artemisia princeps Species Asteraceae Eukaryota n.a. n.a. n.a. PMID[17996677]
NPO11438 Angelica gigas Species Apiaceae Eukaryota n.a. root n.a. PMID[17997069]
NPO5241 Myristica fragrans Species Myristicaceae Eukaryota seeds n.a. n.a. PMID[17998162]
NPO5241 Myristica fragrans Species Myristicaceae Eukaryota n.a. n.a. n.a. PMID[1955885]
NPO9290 Zanthoxylum piperitum Species Rutaceae Eukaryota n.a. pericarp n.a. PMID[20628994]
NPO5241 Myristica fragrans Species Myristicaceae Eukaryota n.a. fruit n.a. PMID[20879744]
NPO6336 Asarum sieboldii Species Aristolochiaceae Eukaryota roots n.a. n.a. PMID[22381047]
NPO5315 Zanthoxylum bungeanum Species Rutaceae Eukaryota n.a. n.a. n.a. PMID[24175626]
NPO15462 Angelica sinensis Species Apiaceae Eukaryota n.a. n.a. n.a. PMID[25538068]
NPO15462 Angelica sinensis Species Apiaceae Eukaryota n.a. n.a. n.a. PMID[27400088]
NPO5241 Myristica fragrans Species Myristicaceae Eukaryota n.a. n.a. n.a. PMID[27419473]
NPO28276 Artemisia argyi Species Asteraceae Eukaryota n.a. n.a. n.a. PMID[31181920]
NPO28276 Artemisia argyi Species Asteraceae Eukaryota n.a. n.a. n.a. PMID[31418264]
NPO5241 Myristica fragrans Species Myristicaceae Eukaryota n.a. n.a. Database[FooDB]
NPO24778 Sesamum orientale Species Pedaliaceae Eukaryota n.a. n.a. Database[FooDB]
NPO5241 Myristica fragrans Species Myristicaceae Eukaryota n.a. n.a. Database[FooDB]
NPO5241 Myristica fragrans Species Myristicaceae Eukaryota Aril n.a. n.a. Database[FooDB]
NPO5241 Myristica fragrans Species Myristicaceae Eukaryota Bark n.a. n.a. Database[FooDB]
NPO5241 Myristica fragrans Species Myristicaceae Eukaryota Leaf n.a. n.a. Database[FooDB]
NPO24778 Sesamum orientale Species Pedaliaceae Eukaryota Leaf n.a. n.a. Database[FooDB]
NPO5241 Myristica fragrans Species Myristicaceae Eukaryota Leaf Essent. Oil n.a. n.a. Database[FooDB]
NPO5241 Myristica fragrans Species Myristicaceae Eukaryota Seed n.a. n.a. Database[FooDB]
NPO24778 Sesamum orientale Species Pedaliaceae Eukaryota Seed n.a. n.a. Database[FooDB]
NPO27288 Citrus maxima Species Rutaceae Eukaryota n.a. n.a. Database[FooDB]
NPO24778 Sesamum orientale Species Pedaliaceae Eukaryota n.a. n.a. Database[FooDB]
NPO6336 Asarum sieboldii Species Aristolochiaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO25094 Artemisia princeps Species Asteraceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO15462 Angelica sinensis Species Apiaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO2921 Angelica acutiloba Species Apiaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO9290 Zanthoxylum piperitum Species Rutaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO8698 Zanthoxylum schinifolium Species Rutaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO11438 Angelica gigas Species Apiaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO24778 Sesamum orientale Species Pedaliaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO5241 Myristica fragrans Species Myristicaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO9783 Mikania scandens Species Asteraceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO5315 Zanthoxylum bungeanum Species Rutaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO5131 Scorzonera hispanica Species Asteraceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO28276 Artemisia argyi Species Asteraceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO27288 Citrus maxima Species Rutaceae Eukaryota n.a. n.a. Database[Phenol-Explorer]
NPO5241 Myristica fragrans Species Myristicaceae Eukaryota n.a. n.a. Database[Phenol-Explorer]
NPO25094 Artemisia princeps Species Asteraceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO5131 Scorzonera hispanica Species Asteraceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO9783 Mikania scandens Species Asteraceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO15462 Angelica sinensis Species Apiaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO9290 Zanthoxylum piperitum Species Rutaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO24778 Sesamum orientale Species Pedaliaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO2921 Angelica acutiloba Species Apiaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO27288 Citrus maxima Species Rutaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO28276 Artemisia argyi Species Asteraceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO11438 Angelica gigas Species Apiaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO6336 Asarum sieboldii Species Aristolochiaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO5241 Myristica fragrans Species Myristicaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO8698 Zanthoxylum schinifolium Species Rutaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO5315 Zanthoxylum bungeanum Species Rutaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO5241 Myristica fragrans Species Myristicaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO6336 Asarum sieboldii Species Aristolochiaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO9783 Mikania scandens Species Asteraceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO11438 Angelica gigas Species Apiaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO12468 Asarum heterotropoides Species Aristolochiaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO8698 Zanthoxylum schinifolium Species Rutaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO9290 Zanthoxylum piperitum Species Rutaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO5315 Zanthoxylum bungeanum Species Rutaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO28276 Artemisia argyi Species Asteraceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO24778 Sesamum orientale Species Pedaliaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO15462 Angelica sinensis Species Apiaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO2921 Angelica acutiloba Species Apiaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO5241 Myristica fragrans Species Myristicaceae Eukaryota n.a. n.a. n.a. Database[Title]
NPO24778 Sesamum orientale Species Pedaliaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO6336 Asarum sieboldii Species Aristolochiaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO5315 Zanthoxylum bungeanum Species Rutaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO2921 Angelica acutiloba Species Apiaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO15462 Angelica sinensis Species Apiaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO10492 Artemisia montana Species Asteraceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO11438 Angelica gigas Species Apiaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO8698 Zanthoxylum schinifolium Species Rutaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO9290 Zanthoxylum piperitum Species Rutaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO4659 Asiasarum heterotropoides n.a. n.a. n.a. n.a. n.a. n.a. Database[TM-MC]
NPO28276 Artemisia argyi Species Asteraceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO12468 Asarum heterotropoides Species Aristolochiaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO27288 Citrus maxima Species Rutaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO5241 Myristica fragrans Species Myristicaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO25094 Artemisia princeps Species Asteraceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO29078 Asiasarum sieboldii n.a. n.a. n.a. n.a. n.a. n.a. Database[TM-MC]
NPO9783 Mikania scandens Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO4746 Centaurea arenaria Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO9361 Aplophyllum villosum n.a. n.a. n.a. n.a. n.a. n.a. Database[UNPD]
NPO10492 Artemisia montana Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO13042 Diospyros abyssinica Species Ebenaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO9553 Phyllodium pulchellum Species Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO5131 Scorzonera hispanica Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO9290 Zanthoxylum piperitum Species Rutaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO15462 Angelica sinensis Species Apiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO1326 Cratystylis conocephala Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO25094 Artemisia princeps Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO12367 Diospyros elliptifolia Species Ebenaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO9989 Cotylelobium scabriusculum Species Dipterocarpaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO13555 Beaucarnea recurvata Species Asparagaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO12468 Asarum heterotropoides Species Aristolochiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO7870 Zanthoxylum piperitum Species Rutaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO28276 Artemisia argyi Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO5315 Zanthoxylum bungeanum Species Rutaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO29078 Asiasarum sieboldii n.a. n.a. n.a. n.a. n.a. n.a. Database[UNPD]
NPO27288 Citrus maxima Species Rutaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO8698 Zanthoxylum schinifolium Species Rutaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO12233 Diospyros peregrina Species Ebenaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO12591 Archaster typicus Species Archasteridae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO2921 Angelica acutiloba Species Apiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO6336 Asarum sieboldii Species Aristolochiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO22899 Phaeotremella fagi Species Phaeotremellaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO24778 Sesamum orientale Species Pedaliaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO6386 Gutenbergia cordifolia Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO12819 Clitocybe subilludens Species Tricholomataceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO4659 Asiasarum heterotropoides n.a. n.a. n.a. n.a. n.a. n.a. Database[UNPD]
NPO11333 Trapa japonica Species Lythraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO11438 Angelica gigas Species Apiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO5241 Myristica fragrans Species Myristicaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO8601 Petrosia volcano Species Petrosiidae Eukaryota n.a. n.a. n.a. Database[UNPD]

☑ Note for Reference:
In addition to directly collecting NP source organism data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated them from below databases:
UNPD: Universal Natural Products Database [PMID: 23638153].
StreptomeDB: a database of streptomycetes natural products [PMID: 33051671].
TM-MC: a database of medicinal materials and chemical compounds in Northeast Asian traditional medicine [PMID: 26156871].
TCM@Taiwan: a Traditional Chinese Medicine database [PMID: 21253603].
TCMID: a Traditional Chinese Medicine database [PMID: 29106634].
TCMSP: The traditional Chinese medicine systems pharmacology database and analysis platform [PMID: 24735618].
HerDing: a herb recommendation system to treat diseases using genes and chemicals [PMID: 26980517].
MetaboLights: a metabolomics database [PMID: 27010336].
FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].

  NP Quantity Composition/Concentration

Organism ID NP ID Organism Material Preparation Organism Part NP Quantity (Standard) NP Quantity (Minimum) NP Quantity (Maximum) Quantity Unit Reference

☑ Note for Reference:
In addition to directly collecting NP quantitative data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated NP quantitative records for specific NP domains (e.g., NPS from foods or herbs) from domain-specific databases. These databases include:
DUKE: Dr. Duke's Phytochemical and Ethnobotanical Databases.
PHENOL EXPLORER: is the first comprehensive database on polyphenol content in foods [PMID: 24103452], its homepage can be accessed at here.
FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].

  Biological Activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference
NPT106 Individual Protein Peroxisome proliferator-activated receptor delta Homo sapiens EC50 = 33900.0 nM PMID[487764]
NPT2 Others Unspecified EC50 = 20900.0 nM PMID[487764]
NPT866 Individual Protein Peroxisome proliferator-activated receptor alpha Homo sapiens EC50 = 53200.0 nM PMID[487764]
NPT99 Individual Protein Peroxisome proliferator-activated receptor gamma Homo sapiens EC50 = 18900.0 nM PMID[487764]
NPT27 Others Unspecified Activity = 113.0 % PMID[487765]
NPT20529 NON-MOLECULAR NON-PROTEIN TARGET n.a. IC50 = 32650.0 nM PMID[487765]

☑ Note for Activity Records:
☉ The quantitative biological activities were primarily integrated from ChEMBL (Version-30) database and were also directly collected from PubMed literature. PubMed PMID was provided as the reference link for each activity record.

  Chemically structural similarity: I. Similar Active Natural Products in NPASS

Top-200 similar NPs were calculated against the active-NP-set (includes 4,3285 NPs with experimentally-derived bioactivity available in NPASS)

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules. Tc lies between [0, 1] where '1' indicates the highest similarity. What is Tanimoto coefficient

●  The left chart: Distribution of similarity level between NPC123526 and all remaining natural products in the NPASS database.
●  The right table: Most similar natural products (Tc>=0.56 or Top200).

Similarity Score Similarity Level Natural Product ID
1.0 High Similarity NPC88640
1.0 High Similarity NPC193666
0.9771 High Similarity NPC135777
0.9771 High Similarity NPC142547
0.9704 High Similarity NPC255566
0.9704 High Similarity NPC265154
0.9704 High Similarity NPC298317
0.9621 High Similarity NPC18576
0.9559 High Similarity NPC185071
0.9559 High Similarity NPC12728
0.9545 High Similarity NPC47181
0.9542 High Similarity NPC471505
0.9481 High Similarity NPC177868
0.9478 High Similarity NPC101807
0.9474 High Similarity NPC101624
0.9474 High Similarity NPC184938
0.9466 High Similarity NPC7171
0.9466 High Similarity NPC227160
0.9466 High Similarity NPC158079
0.9466 High Similarity NPC82111
0.9466 High Similarity NPC228346
0.9466 High Similarity NPC27843
0.9466 High Similarity NPC115207
0.9466 High Similarity NPC40432
0.9466 High Similarity NPC161557
0.9416 High Similarity NPC477898
0.9394 High Similarity NPC106739
0.9394 High Similarity NPC207400
0.9394 High Similarity NPC181049
0.9394 High Similarity NPC259742
0.9394 High Similarity NPC147616
0.9394 High Similarity NPC219671
0.9394 High Similarity NPC104077
0.9389 High Similarity NPC271208
0.9389 High Similarity NPC233224
0.9348 High Similarity NPC84181
0.9333 High Similarity NPC469981
0.9323 High Similarity NPC169973
0.9281 High Similarity NPC22150
0.9281 High Similarity NPC279298
0.9281 High Similarity NPC38041
0.9281 High Similarity NPC469586
0.927 High Similarity NPC471908
0.927 High Similarity NPC472711
0.9248 High Similarity NPC33611
0.9248 High Similarity NPC129687
0.9248 High Similarity NPC158526
0.9248 High Similarity NPC171928
0.9248 High Similarity NPC100223
0.9248 High Similarity NPC16830
0.9248 High Similarity NPC4940
0.9242 High Similarity NPC241522
0.9242 High Similarity NPC275950
0.9242 High Similarity NPC257582
0.9242 High Similarity NPC64201
0.9242 High Similarity NPC77040
0.9242 High Similarity NPC242807
0.9242 High Similarity NPC174495
0.9242 High Similarity NPC145305
0.9242 High Similarity NPC153739
0.9242 High Similarity NPC42300
0.9242 High Similarity NPC92164
0.9242 High Similarity NPC187998
0.9237 High Similarity NPC158471
0.9237 High Similarity NPC184733
0.9237 High Similarity NPC129570
0.9237 High Similarity NPC226862
0.9237 High Similarity NPC57119
0.9237 High Similarity NPC45774
0.9237 High Similarity NPC11258
0.9237 High Similarity NPC165128
0.9237 High Similarity NPC128208
0.9237 High Similarity NPC282703
0.9237 High Similarity NPC21867
0.9214 High Similarity NPC112861
0.9209 High Similarity NPC179521
0.9197 High Similarity NPC46591
0.9191 High Similarity NPC474039
0.9185 High Similarity NPC126409
0.9185 High Similarity NPC99572
0.9185 High Similarity NPC174191
0.9185 High Similarity NPC474139
0.9185 High Similarity NPC189474
0.9173 High Similarity NPC277804
0.9173 High Similarity NPC476345
0.9167 High Similarity NPC475875
0.9143 High Similarity NPC477702
0.9143 High Similarity NPC18979
0.9137 High Similarity NPC185307
0.9137 High Similarity NPC470950
0.9124 High Similarity NPC156376
0.9111 High Similarity NPC31530
0.9111 High Similarity NPC67247
0.9104 High Similarity NPC7744
0.9098 High Similarity NPC134764
0.9098 High Similarity NPC171550
0.9098 High Similarity NPC181079
0.9098 High Similarity NPC173308
0.9091 High Similarity NPC470084
0.9084 High Similarity NPC274356
0.9078 High Similarity NPC212890
0.9071 High Similarity NPC283995
0.9071 High Similarity NPC470235
0.9071 High Similarity NPC129417
0.9065 High Similarity NPC246947
0.9065 High Similarity NPC302506
0.9065 High Similarity NPC476356
0.9065 High Similarity NPC253878
0.9058 High Similarity NPC56091
0.9051 High Similarity NPC185908
0.9044 High Similarity NPC165155
0.9044 High Similarity NPC25333
0.9044 High Similarity NPC24490
0.9044 High Similarity NPC49235
0.9044 High Similarity NPC34103
0.9044 High Similarity NPC141765
0.9044 High Similarity NPC148893
0.9037 High Similarity NPC266848
0.9037 High Similarity NPC136750
0.9037 High Similarity NPC158331
0.9021 High Similarity NPC55158
0.9021 High Similarity NPC51328
0.9021 High Similarity NPC286235
0.9015 High Similarity NPC165045
0.9015 High Similarity NPC158737
0.9015 High Similarity NPC118533
0.9007 High Similarity NPC180953
0.9 High Similarity NPC46092
0.9 High Similarity NPC474808
0.8993 High Similarity NPC471414
0.8978 High Similarity NPC52277
0.8978 High Similarity NPC199459
0.8978 High Similarity NPC177035
0.8978 High Similarity NPC471988
0.8971 High Similarity NPC470881
0.8971 High Similarity NPC287745
0.8963 High Similarity NPC65183
0.8963 High Similarity NPC204215
0.8963 High Similarity NPC175067
0.8963 High Similarity NPC261812
0.8963 High Similarity NPC72046
0.8958 High Similarity NPC98624
0.8958 High Similarity NPC475224
0.8951 High Similarity NPC130449
0.8951 High Similarity NPC226153
0.8951 High Similarity NPC301961
0.8951 High Similarity NPC248132
0.8951 High Similarity NPC166584
0.8951 High Similarity NPC304048
0.8944 High Similarity NPC3982
0.8944 High Similarity NPC154971
0.8944 High Similarity NPC252286
0.8939 High Similarity NPC40352
0.8939 High Similarity NPC206882
0.8939 High Similarity NPC213711
0.8936 High Similarity NPC477701
0.8936 High Similarity NPC166884
0.8936 High Similarity NPC473046
0.8936 High Similarity NPC472713
0.8936 High Similarity NPC187774
0.8936 High Similarity NPC141569
0.8936 High Similarity NPC472712
0.8936 High Similarity NPC118385
0.8931 High Similarity NPC146355
0.8931 High Similarity NPC121783
0.8931 High Similarity NPC34902
0.8931 High Similarity NPC131747
0.8931 High Similarity NPC18449
0.8931 High Similarity NPC257682
0.8929 High Similarity NPC41782
0.8921 High Similarity NPC284464
0.8913 High Similarity NPC283949
0.8913 High Similarity NPC281780
0.8905 High Similarity NPC150534
0.8897 High Similarity NPC196937
0.8897 High Similarity NPC6836
0.8889 High Similarity NPC65942
0.8889 High Similarity NPC248307
0.8889 High Similarity NPC192255
0.8881 High Similarity NPC15956
0.8881 High Similarity NPC224674
0.8881 High Similarity NPC193473
0.8881 High Similarity NPC31325
0.8881 High Similarity NPC39657
0.8881 High Similarity NPC275284
0.8881 High Similarity NPC114505
0.8881 High Similarity NPC213074
0.8872 High Similarity NPC5428
0.8865 High Similarity NPC113680
0.8865 High Similarity NPC278961
0.8864 High Similarity NPC148627
0.8857 High Similarity NPC312199
0.8855 High Similarity NPC249788
0.8855 High Similarity NPC317769
0.8855 High Similarity NPC31344
0.8849 High Similarity NPC113550
0.8849 High Similarity NPC9068
0.8849 High Similarity NPC30951
0.8849 High Similarity NPC6369
0.8841 High Similarity NPC54743

  Chemically structural similarity: II. Similar Clinical/Approved Drugs

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules.

●  The left chart: Distribution of similarity level between NPC123526 and all drugs/candidates.
●  The right table: Most similar clinical/approved drugs (Tc>=0.56 or Top200).

Similarity Score Similarity Level Drug ID Developmental Stage
0.8603 High Similarity NPD3027 Phase 3
0.8421 Intermediate Similarity NPD3705 Approved
0.8366 Intermediate Similarity NPD6234 Discontinued
0.8117 Intermediate Similarity NPD4965 Approved
0.8117 Intermediate Similarity NPD4967 Phase 2
0.8117 Intermediate Similarity NPD4966 Approved
0.806 Intermediate Similarity NPD1357 Approved
0.8028 Intermediate Similarity NPD1613 Approved
0.8028 Intermediate Similarity NPD1612 Clinical (unspecified phase)
0.8015 Intermediate Similarity NPD5283 Phase 1
0.8 Intermediate Similarity NPD7228 Approved
0.7987 Intermediate Similarity NPD6143 Clinical (unspecified phase)
0.7945 Intermediate Similarity NPD7266 Discontinued
0.7922 Intermediate Similarity NPD37 Approved
0.7872 Intermediate Similarity NPD1529 Clinical (unspecified phase)
0.7863 Intermediate Similarity NPD228 Approved
0.7838 Intermediate Similarity NPD6674 Discontinued
0.7801 Intermediate Similarity NPD1530 Clinical (unspecified phase)
0.7801 Intermediate Similarity NPD2861 Phase 2
0.7778 Intermediate Similarity NPD3620 Phase 2
0.7778 Intermediate Similarity NPD3619 Clinical (unspecified phase)
0.7756 Intermediate Similarity NPD2977 Approved
0.7756 Intermediate Similarity NPD2978 Approved
0.771 Intermediate Similarity NPD3021 Approved
0.771 Intermediate Similarity NPD3022 Approved
0.7688 Intermediate Similarity NPD7199 Phase 2
0.7643 Intermediate Similarity NPD4379 Clinical (unspecified phase)
0.7626 Intermediate Similarity NPD1091 Approved
0.7593 Intermediate Similarity NPD7184 Clinical (unspecified phase)
0.7566 Intermediate Similarity NPD5058 Phase 3
0.7561 Intermediate Similarity NPD3818 Discontinued
0.7548 Intermediate Similarity NPD1653 Approved
0.7534 Intermediate Similarity NPD4060 Phase 1
0.7515 Intermediate Similarity NPD8055 Clinical (unspecified phase)
0.75 Intermediate Similarity NPD4908 Phase 1
0.7485 Intermediate Similarity NPD7240 Approved
0.7467 Intermediate Similarity NPD1375 Discontinued
0.7456 Intermediate Similarity NPD7090 Clinical (unspecified phase)
0.7415 Intermediate Similarity NPD1558 Phase 1
0.7397 Intermediate Similarity NPD4907 Clinical (unspecified phase)
0.7394 Intermediate Similarity NPD2983 Phase 2
0.7394 Intermediate Similarity NPD2982 Phase 2
0.7381 Intermediate Similarity NPD7685 Pre-registration
0.7376 Intermediate Similarity NPD1610 Phase 2
0.7368 Intermediate Similarity NPD4236 Phase 3
0.7368 Intermediate Similarity NPD4237 Approved
0.7365 Intermediate Similarity NPD7074 Phase 3
0.7358 Intermediate Similarity NPD1934 Approved
0.7357 Intermediate Similarity NPD5126 Approved
0.7357 Intermediate Similarity NPD5125 Phase 3
0.7324 Intermediate Similarity NPD2981 Phase 2
0.732 Intermediate Similarity NPD4110 Phase 3
0.732 Intermediate Similarity NPD4109 Clinical (unspecified phase)
0.731 Intermediate Similarity NPD3018 Phase 2
0.7305 Intermediate Similarity NPD7054 Approved
0.7278 Intermediate Similarity NPD7680 Approved
0.7273 Intermediate Similarity NPD3600 Clinical (unspecified phase)
0.7273 Intermediate Similarity NPD5084 Clinical (unspecified phase)
0.7262 Intermediate Similarity NPD7472 Approved
0.7261 Intermediate Similarity NPD6980 Clinical (unspecified phase)
0.7255 Intermediate Similarity NPD5698 Clinical (unspecified phase)
0.7255 Intermediate Similarity NPD3060 Approved
0.7248 Intermediate Similarity NPD5735 Approved
0.7248 Intermediate Similarity NPD6355 Discontinued
0.7246 Intermediate Similarity NPD7157 Approved
0.7239 Intermediate Similarity NPD2684 Approved
0.7237 Intermediate Similarity NPD2029 Clinical (unspecified phase)
0.7233 Intermediate Similarity NPD7028 Phase 2
0.7222 Intermediate Similarity NPD3882 Suspended
0.7219 Intermediate Similarity NPD5588 Approved
0.7219 Intermediate Similarity NPD4108 Discontinued
0.7208 Intermediate Similarity NPD6331 Phase 2
0.7205 Intermediate Similarity NPD5563 Clinical (unspecified phase)
0.7205 Intermediate Similarity NPD2393 Clinical (unspecified phase)
0.7178 Intermediate Similarity NPD7975 Clinical (unspecified phase)
0.7171 Intermediate Similarity NPD2161 Phase 2
0.7161 Intermediate Similarity NPD5307 Clinical (unspecified phase)
0.7153 Intermediate Similarity NPD7843 Approved
0.7152 Intermediate Similarity NPD4536 Approved
0.7152 Intermediate Similarity NPD4538 Approved
0.7152 Intermediate Similarity NPD4537 Clinical (unspecified phase)
0.7151 Intermediate Similarity NPD7237 Clinical (unspecified phase)
0.7143 Intermediate Similarity NPD5536 Phase 2
0.7126 Intermediate Similarity NPD7243 Clinical (unspecified phase)
0.7124 Intermediate Similarity NPD5763 Approved
0.7124 Intermediate Similarity NPD5762 Approved
0.7118 Intermediate Similarity NPD6797 Phase 2
0.7117 Intermediate Similarity NPD4868 Clinical (unspecified phase)
0.7115 Intermediate Similarity NPD6783 Clinical (unspecified phase)
0.7099 Intermediate Similarity NPD2801 Approved
0.7097 Intermediate Similarity NPD4628 Phase 3
0.7095 Intermediate Similarity NPD7095 Approved
0.7092 Intermediate Similarity NPD1548 Phase 1
0.7086 Intermediate Similarity NPD6653 Approved
0.7076 Intermediate Similarity NPD7251 Discontinued
0.7067 Intermediate Similarity NPD2238 Phase 2
0.7055 Intermediate Similarity NPD3094 Phase 2
0.7051 Intermediate Similarity NPD6190 Approved
0.7047 Intermediate Similarity NPD5110 Phase 2
0.7047 Intermediate Similarity NPD5109 Approved
0.7047 Intermediate Similarity NPD5111 Phase 2
0.7035 Intermediate Similarity NPD7808 Phase 3
0.7035 Intermediate Similarity NPD4338 Clinical (unspecified phase)
0.7034 Intermediate Similarity NPD4749 Approved
0.7032 Intermediate Similarity NPD5177 Phase 3
0.7025 Intermediate Similarity NPD4123 Phase 3
0.7024 Intermediate Similarity NPD6166 Phase 2
0.7024 Intermediate Similarity NPD6168 Clinical (unspecified phase)
0.7024 Intermediate Similarity NPD6167 Clinical (unspecified phase)
0.7023 Intermediate Similarity NPD3020 Approved
0.702 Intermediate Similarity NPD3657 Discovery
0.7007 Intermediate Similarity NPD6584 Phase 3
0.7 Intermediate Similarity NPD4210 Discontinued
0.7 Intermediate Similarity NPD1726 Clinical (unspecified phase)
0.7 Intermediate Similarity NPD2674 Phase 3
0.7 Intermediate Similarity NPD6671 Approved
0.7 Intermediate Similarity NPD6233 Phase 2
0.6994 Remote Similarity NPD8455 Phase 2
0.6993 Remote Similarity NPD5960 Phase 3
0.6986 Remote Similarity NPD8651 Approved
0.6981 Remote Similarity NPD5261 Clinical (unspecified phase)
0.698 Remote Similarity NPD4625 Phase 3
0.6977 Remote Similarity NPD6559 Discontinued
0.697 Remote Similarity NPD4381 Clinical (unspecified phase)
0.697 Remote Similarity NPD5604 Discontinued
0.6966 Remote Similarity NPD1608 Approved
0.6963 Remote Similarity NPD968 Approved
0.6957 Remote Similarity NPD6055 Clinical (unspecified phase)
0.6954 Remote Similarity NPD4140 Approved
0.6951 Remote Similarity NPD6374 Clinical (unspecified phase)
0.6951 Remote Similarity NPD2560 Approved
0.6951 Remote Similarity NPD2563 Approved
0.6943 Remote Similarity NPD2677 Approved
0.6933 Remote Similarity NPD3145 Approved
0.6933 Remote Similarity NPD6410 Clinical (unspecified phase)
0.6933 Remote Similarity NPD3144 Approved
0.6933 Remote Similarity NPD7945 Clinical (unspecified phase)
0.6933 Remote Similarity NPD6798 Discontinued
0.6928 Remote Similarity NPD7097 Phase 1
0.6923 Remote Similarity NPD4162 Approved
0.6923 Remote Similarity NPD2489 Approved
0.6923 Remote Similarity NPD27 Approved
0.6918 Remote Similarity NPD5327 Phase 3
0.6918 Remote Similarity NPD4160 Clinical (unspecified phase)
0.6918 Remote Similarity NPD3685 Discontinued
0.6914 Remote Similarity NPD4678 Approved
0.6914 Remote Similarity NPD4675 Approved
0.6913 Remote Similarity NPD5752 Clinical (unspecified phase)
0.6912 Remote Similarity NPD290 Approved
0.691 Remote Similarity NPD7296 Approved
0.6903 Remote Similarity NPD6006 Clinical (unspecified phase)
0.6903 Remote Similarity NPD6004 Phase 3
0.6903 Remote Similarity NPD6003 Clinical (unspecified phase)
0.6903 Remote Similarity NPD6005 Phase 3
0.6903 Remote Similarity NPD6002 Phase 3
0.6899 Remote Similarity NPD7124 Phase 2
0.6897 Remote Similarity NPD7313 Approved
0.6897 Remote Similarity NPD7312 Approved
0.6897 Remote Similarity NPD7311 Approved
0.6897 Remote Similarity NPD7310 Approved
0.6897 Remote Similarity NPD3092 Approved
0.6894 Remote Similarity NPD3686 Approved
0.6894 Remote Similarity NPD3687 Approved
0.6893 Remote Similarity NPD8397 Clinical (unspecified phase)
0.6892 Remote Similarity NPD6917 Clinical (unspecified phase)
0.689 Remote Similarity NPD5772 Approved
0.689 Remote Similarity NPD5773 Approved
0.6886 Remote Similarity NPD5494 Approved
0.6883 Remote Similarity NPD6028 Clinical (unspecified phase)
0.6883 Remote Similarity NPD6029 Clinical (unspecified phase)
0.6875 Remote Similarity NPD7526 Approved
0.6875 Remote Similarity NPD7527 Clinical (unspecified phase)
0.6875 Remote Similarity NPD6516 Phase 2
0.6875 Remote Similarity NPD5846 Approved
0.6875 Remote Similarity NPD52 Approved
0.6871 Remote Similarity NPD6696 Suspended
0.6864 Remote Similarity NPD2970 Approved
0.6864 Remote Similarity NPD2969 Approved
0.6863 Remote Similarity NPD6353 Approved
0.6857 Remote Similarity NPD7309 Approved
0.6855 Remote Similarity NPD4357 Discontinued
0.6855 Remote Similarity NPD1511 Approved
0.6852 Remote Similarity NPD4005 Discontinued
0.6849 Remote Similarity NPD2233 Approved
0.6849 Remote Similarity NPD2231 Phase 2
0.6849 Remote Similarity NPD2232 Approved
0.6849 Remote Similarity NPD2230 Approved
0.6849 Remote Similarity NPD2235 Phase 2
0.6848 Remote Similarity NPD3817 Phase 2
0.6846 Remote Similarity NPD9494 Approved
0.6845 Remote Similarity NPD8127 Discontinued
0.6842 Remote Similarity NPD5837 Clinical (unspecified phase)
0.6839 Remote Similarity NPD2438 Suspended
0.6835 Remote Similarity NPD5241 Discontinued
0.6829 Remote Similarity NPD3382 Approved
0.6829 Remote Similarity NPD3383 Approved
0.6829 Remote Similarity NPD3384 Approved
0.6821 Remote Similarity NPD6859 Clinical (unspecified phase)
0.6818 Remote Similarity NPD6896 Approved
0.6818 Remote Similarity NPD6895 Approved

  Bioactivity similarity: Similar Natural Products in NPASS

Bioactivity similarity was calculated based on bioactivity descriptors of compounds. The bioactivity descriptors were calculated by a recently developed AI algorithm Chemical Checker (CC) [Nature Biotechnology, 38:1087–1096, 2020; Nature Communications, 12:3932, 2021], which evaluated bioactivity similarities at five levels:
A: chemistry similarity;
B: biological targets similarity;
C: networks similarity;
D: cell-based bioactivity similarity;
E: similarity based on clinical data.

Those 5 categories of CC bioactivity descriptors were calculated and then subjected to manifold projection using UMAP algorithm, to project all NPs on a 2-Dimensional space. The current NP was highlighted with a small circle in the 2-D map. Below figures: left-to-right, A-to-E.

A: chemistry similarity
B: biological targets similarity
C: networks similarity
D: cell-based bioactivity similarity
E: similarity based on clinical data